RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12162
         (242 letters)



>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
           bifunctional FAD synthetase {Thermotoga maritima [TaxId:
           2336]}
          Length = 130

 Score = 27.3 bits (60), Expect = 0.99
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 123 VVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVEQDYSLVYFHYGLTSKNK 182
           V  D  FGRKL   +A     N++L   +   YL  V     ++ + ++   +  T  + 
Sbjct: 8   VHKDREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDGKKKFGVMNVGFRPTVGDA 67

Query: 183 PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIR 216
            ++ +           Y + LK    +    F+R
Sbjct: 68  RNVKYEVYILDFEGDLYGQRLK----LEVLKFMR 97


>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 244

 Score = 27.4 bits (59), Expect = 1.4
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 73  VSDGTIEENFEE------ELINAPMGQLDSLAATCTDDELKD 108
           +S GT+EE  ++       L    +   DS     + +EL+ 
Sbjct: 194 ISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRK 235


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 104 DELKDEEDFADVASYGIVDVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKF 163
           + L+  +   DV     V VV  + F     VL AC                    LD  
Sbjct: 17  NRLRSRDILTDV-----VIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE 71

Query: 164 VEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDR 197
           +  +   +   +  TS+       + +       
Sbjct: 72  INPEGFNILLDFMYTSRLNLREGNIMAVMATAMY 105


>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
          L2 {Thermus thermophilus [TaxId: 274]}
          Length = 125

 Score = 25.2 bits (55), Expect = 4.5
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)

Query: 5  YQPNFPGIRNAIASNNDEET---PYPSL 29
          ++P  P  R    ++  E T   P  SL
Sbjct: 5  FKPYTPSRRFMTVADFSEITKTEPEKSL 32


>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
           gammarus) [TaxId: 6707]}
          Length = 181

 Score = 25.5 bits (55), Expect = 5.0
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 155 YLTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKAL 206
               V+ +    +Y+ +Y             S+++S       +Y K  +A 
Sbjct: 102 AAPLVILETDYSNYACLYSCIDYNFGYHSDFSFIFSRSANLADQYVKKCEAA 153


>d2aega1 d.303.1.1 (A:2-244) Hypothetical protein Atu5096
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 243

 Score = 25.6 bits (55), Expect = 6.1
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 9/83 (10%)

Query: 1   MDTDYQPNFPGIRNAIASNNDEET-------PYPSLSDFHDYE-PNLEFDDSELQASLNG 52
               + P +  +R        ++        P   +   H+   P L     E +  +  
Sbjct: 154 FAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRA 213

Query: 53  DAEEIKVFDTPVPFDYLES-PVS 74
             +E K    P+P D L      
Sbjct: 214 PWDEAKHLARPLPNDALIILSRE 236


>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 24.4 bits (53), Expect = 7.9
 Identities = 4/25 (16%), Positives = 11/25 (44%)

Query: 197 RKYKKNLKALYLVHPTGFIRVVLQI 221
           ++ +K L+  +  +P     V+   
Sbjct: 85  KRIRKVLQGKFHGNPMHVAVVISNC 109


>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
          {Bacteroides vulgatus [TaxId: 821]}
          Length = 127

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 8  NFPGIRNAIASNNDEETPYPSLSDFHDYEPNLEFDDSELQASLNGDAEEIKVFDTPVPFD 67
          +F   + A      +     S          LEF+         G+  EI   +  VP  
Sbjct: 23 HFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNS-------KGEWLEIDCKNKSVPST 75

Query: 68 YLESPVSDGTIEENFEEELI 87
          ++   +S   ++ N+     
Sbjct: 76 FIPQAISK-YMKANYNGHKT 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,484
Number of extensions: 47147
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 11
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)