Query psy12163
Match_columns 88
No_of_seqs 102 out of 396
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:20:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2z_A Circadian clock protein 8.4 2E+02 0.0068 18.3 2.0 15 73-87 93-107 (111)
2 1eq6_A MOG1P; alpha-beta, prot 7.4 1E+02 0.0035 21.0 0.2 7 26-32 182-188 (189)
3 4b1v_M Phosphatase and actin r 6.9 1.4E+02 0.0049 14.8 0.6 6 81-86 20-25 (32)
4 1r5q_A KAI A, circadian oscill 6.7 2.1E+02 0.007 17.9 1.4 15 73-87 86-100 (102)
5 3c38_A Autoinducer 2 sensor ki 4.4 2.8E+02 0.0097 20.1 1.1 37 27-64 120-163 (270)
6 3m8e_A Putative DNA-binding pr 3.9 3.8E+02 0.013 16.7 1.3 11 11-21 77-87 (124)
7 1r8j_A KAIA; circadian clock p 3.6 4.7E+02 0.016 19.2 1.7 15 73-87 271-285 (289)
8 3lm3_A Uncharacterized protein 3.3 4.7E+02 0.016 20.0 1.5 17 27-46 407-423 (449)
9 3fqm_A NS5A, non-structural pr 3.3 5.6E+02 0.019 17.4 1.8 18 32-49 128-145 (177)
10 3h3g_B Parathyroid hormone-rel 3.0 1.6E+02 0.0055 13.8 -0.9 6 83-88 7-12 (24)
No 1
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=8.40 E-value=2e+02 Score=18.27 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhccc
Q psy12163 73 LQSITCLGGVVKTLA 87 (88)
Q Consensus 73 ~~~~~~~lEi~RR~i 87 (88)
+-.+..++|+-||.+
T Consensus 93 iDv~AHLcEmYRrSI 107 (111)
T 1v2z_A 93 IDVIAHLCEMYRRSI 107 (111)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccC
Confidence 446788899999975
No 2
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=7.36 E-value=1e+02 Score=21.00 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=5.5
Q ss_pred cccccCc
Q psy12163 26 KMDWGLF 32 (88)
Q Consensus 26 ~mDWgL~ 32 (88)
.+|||||
T Consensus 182 V~Dw~LF 188 (189)
T 1eq6_A 182 VVDTSLF 188 (189)
T ss_dssp ESCGGGC
T ss_pred eechhcc
Confidence 4599987
No 3
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=6.89 E-value=1.4e+02 Score=14.81 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=3.3
Q ss_pred hhhhcc
Q psy12163 81 GVVKTL 86 (88)
Q Consensus 81 Ei~RR~ 86 (88)
|++||+
T Consensus 20 elikrg 25 (32)
T 4b1v_M 20 ELIKRG 25 (32)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 555554
No 4
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=6.73 E-value=2.1e+02 Score=17.94 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhccc
Q psy12163 73 LQSITCLGGVVKTLA 87 (88)
Q Consensus 73 ~~~~~~~lEi~RR~i 87 (88)
+-.+..++|+-||.+
T Consensus 86 iDv~AHLcEmYRrSI 100 (102)
T 1r5q_A 86 IDILAHLCEAYRGAI 100 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 446788899999964
No 5
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=4.43 E-value=2.8e+02 Score=20.14 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=19.5
Q ss_pred ccccCcCCCC--CCCCCCCCcccccCC-----CceEEEEEEEEcC
Q psy12163 27 MDWGLFDKNA--PPDNPFLREETVYSS-----TTSTLIGYVLFNP 64 (88)
Q Consensus 27 mDWgL~~~~~--~~~~~~LR~~l~y~~-----~~~Yy~Aiv~~n~ 64 (88)
-||.+.+..+ |.++.+.|+.=+... -.+.|.|++ +|-
T Consensus 120 ~~Wh~~~~~s~~g~~~lLvRr~pIid~~TGEVlG~Ly~gvV-Lnn 163 (270)
T 3c38_A 120 GNWHLVQTPSEGKSVHILMRRSSLIEAGTGQVVGYLYVGIV-LND 163 (270)
T ss_dssp SSCEEEEECCSSSCEEEEEEEEEECCCC-CCCCEEEEEEEE-CTT
T ss_pred CceEEEEeccCCCceEEEEEccceecCCCCcEEEEEEEEEE-ecC
Confidence 3777755442 223444555444433 247777777 443
No 6
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A 4aso_A 4ass_A
Probab=3.90 E-value=3.8e+02 Score=16.65 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=8.3
Q ss_pred HHHHHhhhhhh
Q psy12163 11 AASVISSIYSY 21 (88)
Q Consensus 11 ~~~~inS~Ys~ 21 (88)
+++.+||.|+-
T Consensus 77 vfatvnsfyca 87 (124)
T 3m8e_A 77 VFATVNSFYCA 87 (124)
T ss_dssp HHHHHHHHHHT
T ss_pred eEEEeeeeeee
Confidence 56788888874
No 7
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=3.64 E-value=4.7e+02 Score=19.24 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhccc
Q psy12163 73 LQSITCLGGVVKTLA 87 (88)
Q Consensus 73 ~~~~~~~lEi~RR~i 87 (88)
+-.+..++||-||.|
T Consensus 271 IDvlAHLcEMYRRSI 285 (289)
T 1r8j_A 271 IDVIAHLCEMYRRSI 285 (289)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccC
Confidence 346778889999975
No 8
>3lm3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.44A {Parabacteroides distasonis}
Probab=3.30 E-value=4.7e+02 Score=20.04 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=0.0
Q ss_pred ccccCcCCCCCCCCCCCCcc
Q psy12163 27 MDWGLFDKNAPPDNPFLREE 46 (88)
Q Consensus 27 mDWgL~~~~~~~~~~~LR~~ 46 (88)
+||+|++.. ..+-||++
T Consensus 407 k~WsL~n~i---NQK~lRpQ 423 (449)
T 3lm3_A 407 KDWSLINKI---NQKALRPQ 423 (449)
T ss_dssp CBCCCCSSB---CTTCCSGG
T ss_pred cchHHHhHh---hhccCCCC
No 9
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=3.30 E-value=5.6e+02 Score=17.43 Aligned_cols=18 Identities=39% Similarity=0.781 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCccccc
Q psy12163 32 FDKNAPPDNPFLREETVY 49 (88)
Q Consensus 32 ~~~~~~~~~~~LR~~l~y 49 (88)
+++.++.-+|+||++..|
T Consensus 128 lhr~ap~ckpllrdev~f 145 (177)
T 3fqm_A 128 LHRYAPACKPLLREEVTF 145 (177)
T ss_dssp CCSSCCCCCCCBCSSCEE
T ss_pred EeeccCCCCccccccEEE
No 10
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=3.00 E-value=1.6e+02 Score=13.79 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhcccC
Q psy12163 83 VKTLAW 88 (88)
Q Consensus 83 ~RR~iW 88 (88)
+||-+|
T Consensus 7 ~rRr~w 12 (24)
T 3h3g_B 7 LRRRFF 12 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!