Query psy12163
Match_columns 88
No_of_seqs 102 out of 396
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 20:20:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12163.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12163hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fcda3 d.87.1.1 (A:328-401) F 10.1 10 0.00076 21.0 -2.0 15 14-31 6-20 (74)
2 d1jhsa_ d.107.1.1 (A:) Ran-bin 8.8 37 0.0027 21.5 0.2 7 26-32 181-187 (188)
3 d1vf5c3 f.23.23.1 (C:250-286) 8.8 98 0.0071 14.7 1.8 17 2-18 1-17 (37)
4 d1ivsa2 a.27.1.1 (A:579-796) V 8.4 60 0.0044 20.0 1.1 20 12-31 53-72 (218)
5 d1r5qa_ a.186.1.1 (A:) Circadi 7.9 79 0.0057 18.2 1.4 16 72-87 82-97 (98)
6 d1r8ja1 a.186.1.1 (A:177-282) 7.7 94 0.0069 18.1 1.7 15 73-87 90-104 (106)
7 d2pula1 d.144.1.6 (A:5-396) Me 7.6 65 0.0047 21.6 1.1 11 76-86 328-338 (392)
8 d1pv0a_ a.2.12.1 (A:) Sporulat 5.3 91 0.0066 15.5 0.6 6 81-86 32-37 (46)
9 d1ttea1 a.5.2.1 (A:161-215) Ub 4.4 1.2E+02 0.0084 15.7 0.6 7 79-85 26-32 (55)
10 d1v2za_ a.186.1.1 (A:) Circadi 4.1 2.2E+02 0.016 16.3 1.9 14 72-85 92-105 (106)
No 1
>d1fcda3 d.87.1.1 (A:328-401) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=10.07 E-value=10 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=8.6
Q ss_pred HHhhhhhhhhhhcccccC
Q psy12163 14 VISSIYSYIWDIKMDWGL 31 (88)
Q Consensus 14 ~inS~Ys~~WDv~mDWgL 31 (88)
+.|+|||+. .-|.|+
T Consensus 6 ~~NTCYSlv---~~~~~i 20 (74)
T d1fcda3 6 YLNTCYSIL---APAYGI 20 (74)
T ss_dssp EEEEEEEEE---ETTEEE
T ss_pred eeeeeEEEe---cCCCcE
Confidence 357777762 445554
No 2
>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.79 E-value=37 Score=21.52 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=5.2
Q ss_pred cccccCc
Q psy12163 26 KMDWGLF 32 (88)
Q Consensus 26 ~mDWgL~ 32 (88)
.+|||||
T Consensus 181 V~Dw~LF 187 (188)
T d1jhsa_ 181 VVDTSLF 187 (188)
T ss_dssp ESCGGGG
T ss_pred eeccccc
Confidence 3599987
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.78 E-value=98 Score=14.75 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=11.6
Q ss_pred CCcchhHhHHHHHHhhh
Q psy12163 2 DNPFFYPWLAASVISSI 18 (88)
Q Consensus 2 ~~~~~~~wi~~~~inS~ 18 (88)
+||.|+-|.++.+...+
T Consensus 1 Q~p~Rv~gl~~F~~~v~ 17 (37)
T d1vf5c3 1 QDPNRVKWMIAFICLVM 17 (37)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 57888888776665543
No 4
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=8.39 E-value=60 Score=20.04 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=16.4
Q ss_pred HHHHhhhhhhhhhhcccccC
Q psy12163 12 ASVISSIYSYIWDIKMDWGL 31 (88)
Q Consensus 12 ~~~inS~Ys~~WDv~mDWgL 31 (88)
.-+++.+|.|.|+-..||=+
T Consensus 53 ~~a~~~l~~F~~~~l~d~Y~ 72 (218)
T d1ivsa2 53 AQAAREVYELVWSEFCDWYL 72 (218)
T ss_dssp HHHHHHHHHHHHHTTTTTHH
T ss_pred hhHHHHHHHHhhhhhHHHHH
Confidence 34567899999999999954
No 5
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=7.87 E-value=79 Score=18.20 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhccc
Q psy12163 72 FLQSITCLGGVVKTLA 87 (88)
Q Consensus 72 ~~~~~~~~lEi~RR~i 87 (88)
++-.+..++|+-||.+
T Consensus 82 LiDv~AHLcEmYRrSI 97 (98)
T d1r5qa_ 82 LIDILAHLCEAYRGAI 97 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3446788899999976
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=7.71 E-value=94 Score=18.12 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhccc
Q psy12163 73 LQSITCLGGVVKTLA 87 (88)
Q Consensus 73 ~~~~~~~lEi~RR~i 87 (88)
+-.+..++|+-||.+
T Consensus 90 iDv~AHLcEmYRrSI 104 (106)
T d1r8ja1 90 IDVIAHLCEMYRRSI 104 (106)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 446778899999975
No 7
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}
Probab=7.56 E-value=65 Score=21.62 Aligned_cols=11 Identities=0% Similarity=-0.218 Sum_probs=8.7
Q ss_pred HHHHHhhhhcc
Q psy12163 76 ITCLGGVVKTL 86 (88)
Q Consensus 76 ~~~~lEi~RR~ 86 (88)
-+|-+||+||.
T Consensus 328 ~~~g~~~~rr~ 338 (392)
T d2pula1 328 GFAGCELIRRT 338 (392)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46778999995
No 8
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=5.30 E-value=91 Score=15.54 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=5.0
Q ss_pred hhhhcc
Q psy12163 81 GVVKTL 86 (88)
Q Consensus 81 Ei~RR~ 86 (88)
||.||.
T Consensus 32 Ei~RRs 37 (46)
T d1pv0a_ 32 EIKRRS 37 (46)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 888886
No 9
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.37 E-value=1.2e+02 Score=15.69 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=4.6
Q ss_pred HHhhhhc
Q psy12163 79 LGGVVKT 85 (88)
Q Consensus 79 ~lEi~RR 85 (88)
++|++||
T Consensus 26 vI~VLrr 32 (55)
T d1ttea1 26 IVEVLRR 32 (55)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4577776
No 10
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=4.12 E-value=2.2e+02 Score=16.34 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhc
Q psy12163 72 FLQSITCLGGVVKT 85 (88)
Q Consensus 72 ~~~~~~~~lEi~RR 85 (88)
++-.+..++|+-||
T Consensus 92 LiDv~AHLcEmYRr 105 (106)
T d1v2za_ 92 LIDVIAHLCEMYRR 105 (106)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Done!