RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12163
         (88 letters)



>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 243

 Score = 24.8 bits (54), Expect = 1.7
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 25 IKMDWGLFDKNAPPDNP 41
          +  +WG F  +   D  
Sbjct: 35 VNTEWGAFGDSGELDEF 51


>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665
           {Salmonella typhi [TaxId: 90370]}
          Length = 133

 Score = 23.3 bits (50), Expect = 3.9
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 31  LFDKNAPPDNPFLR 44
             + N P D+ FL+
Sbjct: 118 YANGNFPDDSLFLK 131


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
          mansoni) [TaxId: 6183]}
          Length = 237

 Score = 23.3 bits (50), Expect = 4.9
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 25 IKMDWGLFDKNAPPDNP 41
          I  +WG F +    D  
Sbjct: 36 INTEWGAFGEKGELDCW 52


>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 440

 Score = 22.8 bits (49), Expect = 7.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 35  NAPPDNPF 42
           NA  DNPF
Sbjct: 187 NAVEDNPF 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,111
Number of extensions: 13509
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)