BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12164
(57 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus
GN=Arfgap1 PE=1 SV=2
Length = 414
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYV 39
++Q KY+++AAAL+RDK+ATLA G+EW S A ++
Sbjct: 97 WSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWT 135
>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus
norvegicus GN=Arfgap1 PE=1 SV=1
Length = 415
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYV 39
++Q KY+++AAAL+RDK+ATLA G+EW S A ++
Sbjct: 97 WSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWT 135
>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens
GN=ARFGAP1 PE=1 SV=2
Length = 406
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2 TIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSS 41
++Q+KYN++AAAL+RDK+ LA G EW S A ++
Sbjct: 98 SLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPP 137
>sp|O80925|AGD7_ARATH ADP-ribosylation factor GTPase-activating protein AGD7
OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1
Length = 456
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 6 KYNTKAAALYRDKIATLARGEEW 28
KYN+ AA++YRD+I LA G +W
Sbjct: 98 KYNSNAASVYRDRIQALAEGRQW 120
>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6
OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1
Length = 459
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 6 KYNTKAAALYRDKIATLARGEEWD 29
KYN+ AA++YRD+I LA G W+
Sbjct: 98 KYNSNAASVYRDRIQALAEGRPWN 121
>sp|Q09531|YQP4_CAEEL Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans
GN=F07F6.4 PE=4 SV=2
Length = 529
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 4 QQKYNTKAAALYRDKIATLAR 24
QQKY ++AA +YRDK++TL +
Sbjct: 105 QQKYKSRAAQMYRDKLSTLCQ 125
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus
GN=Arfgap3 PE=2 SV=2
Length = 523
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 6 KYNTKAAALYRDKIATLA 23
KYN++AA LYR+KI TLA
Sbjct: 104 KYNSRAAQLYREKIKTLA 121
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus
norvegicus GN=Arfgap3 PE=2 SV=1
Length = 525
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 6 KYNTKAAALYRDKIATLA 23
KYN++AA LYR+KI TLA
Sbjct: 104 KYNSRAAQLYREKIKTLA 121
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens
GN=ARFGAP3 PE=1 SV=1
Length = 516
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 6 KYNTKAAALYRDKIATLA 23
KYN++AA LYR+KI +LA
Sbjct: 104 KYNSRAAQLYREKIKSLA 121
>sp|Q5R787|ARFG3_PONAB ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii
GN=ARFGAP3 PE=2 SV=1
Length = 516
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 6 KYNTKAAALYRDKIATLA 23
KYN++AA LYR+KI +LA
Sbjct: 104 KYNSRAAQLYREKIKSLA 121
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca
fascicularis GN=ARFGAP3 PE=2 SV=1
Length = 516
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 6 KYNTKAAALYRDKIATLA 23
KYN++AA LYR+KI +LA
Sbjct: 104 KYNSRAAQLYREKIKSLA 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.113 0.287
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,139,626
Number of Sequences: 539616
Number of extensions: 320972
Number of successful extensions: 1267
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 16
length of query: 57
length of database: 191,569,459
effective HSP length: 30
effective length of query: 27
effective length of database: 175,380,979
effective search space: 4735286433
effective search space used: 4735286433
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)