Query psy12164
Match_columns 57
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 20:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0704|consensus 99.6 9.1E-16 2E-20 115.4 4.8 50 1-50 97-152 (386)
2 PLN03114 ADP-ribosylation fact 97.0 0.00079 1.7E-08 51.7 3.6 26 1-26 99-124 (395)
3 KOG0706|consensus 96.6 0.0012 2.7E-08 51.3 2.0 29 2-30 100-128 (454)
4 COG5347 GTPase-activating prot 89.3 0.56 1.2E-05 34.8 3.7 32 1-32 98-129 (319)
5 PF02151 UVR: UvrB/uvrC motif; 70.2 4.3 9.3E-05 20.9 1.8 12 11-22 22-33 (36)
6 KOG3616|consensus 39.8 5.7 0.00012 34.8 -1.3 35 7-41 1228-1268(1636)
7 TIGR03231 anthran_1_2_B anthra 33.3 44 0.00095 21.8 2.3 21 14-34 59-79 (155)
8 smart00105 ArfGap Putative GTP 28.9 33 0.00071 21.1 1.1 22 5-26 89-110 (112)
9 PF03872 RseA_N: Anti sigma-E 27.5 46 0.001 20.0 1.6 12 16-27 3-14 (87)
10 PF12091 DUF3567: Protein of u 25.6 81 0.0017 19.9 2.5 18 10-27 45-62 (85)
11 TIGR03232 benzo_1_2_benB benzo 21.6 1E+02 0.0022 20.1 2.5 18 14-31 59-76 (155)
12 KOG4466|consensus 21.5 76 0.0017 24.0 2.0 19 4-22 29-47 (291)
No 1
>KOG0704|consensus
Probab=99.60 E-value=9.1e-16 Score=115.41 Aligned_cols=50 Identities=50% Similarity=0.813 Sum_probs=42.9
Q ss_pred CcchhhhcchHHHHHHHHHHHHHhCCCC-----CCCCCCCCCCCC-CCcCCCcccc
Q psy12164 1 MTIQQKYNTKAAALYRDKIATLARGEEW-----DQSKSSANSYVS-SNISSSSTGS 50 (57)
Q Consensus 1 ~~i~~KYNs~aAalYRdKI~alaEGr~W-----~~~~s~a~~~~p-~~~s~~~~~~ 50 (57)
|+|++|||++||++|||||+||||||+| ..++.|+.+|+| ++++.-++..
T Consensus 97 ~~i~eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~~syt~a~~~~~~ss~~ 152 (386)
T KOG0704|consen 97 WPIREKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPAQSYTSAAQLGSKSSET 152 (386)
T ss_pred ccHHHhhccHHHHHHHHHHHHHhcCCcccccccccccCcccccccCCCcCCCcCCc
Confidence 7999999999999999999999999999 566678889999 7776655433
No 2
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=97.00 E-value=0.00079 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred CcchhhhcchHHHHHHHHHHHHHhCC
Q psy12164 1 MTIQQKYNTKAAALYRDKIATLARGE 26 (57)
Q Consensus 1 ~~i~~KYNs~aAalYRdKI~alaEGr 26 (57)
+++++||++++|++||++|++++++.
T Consensus 99 ~~~~~KY~S~aA~~Yre~L~keVa~~ 124 (395)
T PLN03114 99 GKTEAKYTSRAADLYKQILAKEVAKS 124 (395)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999998764
No 3
>KOG0706|consensus
Probab=96.59 E-value=0.0012 Score=51.31 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=23.6
Q ss_pred cchhhhcchHHHHHHHHHHHHHhCCCCCC
Q psy12164 2 TIQQKYNTKAAALYRDKIATLARGEEWDQ 30 (57)
Q Consensus 2 ~i~~KYNs~aAalYRdKI~alaEGr~W~~ 30 (57)
.++.|||++||.+||+||..|+.+..-..
T Consensus 100 d~~aKY~SraA~~Yr~kl~~lv~kam~~~ 128 (454)
T KOG0706|consen 100 DANAKYNSRAAKLYREKLKKLVQKAMAEH 128 (454)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999998886544333
No 4
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=89.33 E-value=0.56 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.3
Q ss_pred CcchhhhcchHHHHHHHHHHHHHhCCCCCCCC
Q psy12164 1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSK 32 (57)
Q Consensus 1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~ 32 (57)
++|+.|||+..|+.|+.|+..++.+..|....
T Consensus 98 ~~~k~~yd~~v~~~y~~~ky~~~~~~~~~~~~ 129 (319)
T COG5347 98 LPIKAKYDSSVAKKYIRKKYELKKFIDDSSSP 129 (319)
T ss_pred cccccccCHHHHHHHHHHHHHhhhccccccCc
Confidence 46889999999999999999999999994443
No 5
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=70.25 E-value=4.3 Score=20.89 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy12164 11 AAALYRDKIATL 22 (57)
Q Consensus 11 aAalYRdKI~al 22 (57)
-|+.|||+|..|
T Consensus 22 ~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 22 KAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 478999999876
No 6
>KOG3616|consensus
Probab=39.76 E-value=5.7 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=29.0
Q ss_pred hcchHHHHH------HHHHHHHHhCCCCCCCCCCCCCCCCC
Q psy12164 7 YNTKAAALY------RDKIATLARGEEWDQSKSSANSYVSS 41 (57)
Q Consensus 7 YNs~aAalY------RdKI~alaEGr~W~~~~s~a~~~~p~ 41 (57)
-|..||+|| |+-|-+++||++|......++.++|.
T Consensus 1228 ~~e~aael~l~f~~~keaida~~~~eewakakqvake~~p~ 1268 (1636)
T KOG3616|consen 1228 CHEAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVAKELDPE 1268 (1636)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHhCch
Confidence 477889887 78899999999999887777777664
No 7
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=33.31 E-value=44 Score=21.82 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCC
Q psy12164 14 LYRDKIATLARGEEWDQSKSS 34 (57)
Q Consensus 14 lYRdKI~alaEGr~W~~~~s~ 34 (57)
.-+++|..+..|+.|++-+.+
T Consensus 59 ~L~~RV~rl~~~~a~s~~P~s 79 (155)
T TIGR03231 59 GLEDRVFRIRTGKAASTTPMP 79 (155)
T ss_pred HHHHHHHHHhCCCeeecCCCC
Confidence 569999999999999976654
No 8
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=28.91 E-value=33 Score=21.15 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=10.2
Q ss_pred hhhcchHHHHHHHHHHHHHhCC
Q psy12164 5 QKYNTKAAALYRDKIATLARGE 26 (57)
Q Consensus 5 ~KYNs~aAalYRdKI~alaEGr 26 (57)
++|...+++-|++|.-...+|+
T Consensus 89 ~~~~~fI~~KY~~k~f~~~~~~ 110 (112)
T smart00105 89 QKYESFIAAKYEEKLFVPPESA 110 (112)
T ss_pred HHHHHHHHHHHHhhhccccccC
Confidence 3444444455555444444443
No 9
>PF03872 RseA_N: Anti sigma-E protein RseA, N-terminal domain; InterPro: IPR005572 Sigma-E is important for the induction of proteins involved in heat shock response. RseA binds sigma-E via its N-terminal domain, sequestering sigma-E and preventing transcription from heat-shock promoters []. The C-terminal domain is located in the periplasm, and may interact with other protein that signal periplasmic stress.; GO: 0016989 sigma factor antagonist activity; PDB: 1OR7_F 1YFN_G.
Probab=27.52 E-value=46 Score=20.01 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.9
Q ss_pred HHHHHHHHhCCC
Q psy12164 16 RDKIATLARGEE 27 (57)
Q Consensus 16 RdKI~alaEGr~ 27 (57)
+++|+||.+|..
T Consensus 3 ~E~lSAL~DGEl 14 (87)
T PF03872_consen 3 KESLSALMDGEL 14 (87)
T ss_dssp HHHHHHHHTTS-
T ss_pred HHHHHHHHcCCC
Confidence 689999999974
No 10
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=25.64 E-value=81 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHhCCC
Q psy12164 10 KAAALYRDKIATLARGEE 27 (57)
Q Consensus 10 ~aAalYRdKI~alaEGr~ 27 (57)
..|+.+|+.|.+|.+..+
T Consensus 45 ~~Ae~Fr~~V~~li~~~P 62 (85)
T PF12091_consen 45 SWAEMFREDVQALIASEP 62 (85)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 379999999999998753
No 11
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=21.60 E-value=1e+02 Score=20.14 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCCCCC
Q psy12164 14 LYRDKIATLARGEEWDQS 31 (57)
Q Consensus 14 lYRdKI~alaEGr~W~~~ 31 (57)
.-+++|..|..|+.|++-
T Consensus 59 ~L~~RV~rL~t~~a~se~ 76 (155)
T TIGR03232 59 GLEDRVFRIKTERSSATV 76 (155)
T ss_pred HHHHHHHHHhcCCceecC
Confidence 679999999999999983
No 12
>KOG4466|consensus
Probab=21.50 E-value=76 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=15.1
Q ss_pred hhhhcchHHHHHHHHHHHH
Q psy12164 4 QQKYNTKAAALYRDKIATL 22 (57)
Q Consensus 4 ~~KYNs~aAalYRdKI~al 22 (57)
-+-|+..-+.+||||++.|
T Consensus 29 ~~~f~elkeq~yk~kLa~L 47 (291)
T KOG4466|consen 29 EKQFSELKEQMYKDKLAQL 47 (291)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3457788889999998876
Done!