Query psy12164
Match_columns 57
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:21:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 99.3 1.8E-12 6.1E-17 86.1 2.7 32 1-32 116-147 (147)
2 2crw_A ARF GAP 3, ADP-ribosyla 98.1 2.7E-06 9.3E-11 56.0 4.1 33 2-34 107-146 (149)
3 2p57_A GTPase-activating prote 98.0 2.5E-06 8.5E-11 56.2 2.6 23 2-24 115-137 (144)
4 3sub_A ADP-ribosylation factor 97.9 7.4E-06 2.5E-10 55.1 3.9 26 3-28 100-125 (163)
5 3o47_A ADP-ribosylation factor 97.9 1.3E-05 4.5E-10 54.8 4.1 44 1-44 115-158 (329)
6 2owa_A Arfgap-like finger doma 97.7 1.7E-05 5.7E-10 51.6 2.0 23 2-24 115-137 (138)
7 1e52_A Excinuclease ABC subuni 62.4 2.5 8.4E-05 24.0 0.8 14 10-23 43-56 (63)
8 1or7_C Sigma-E factor negative 29.7 25 0.00086 20.7 1.6 12 16-27 3-14 (90)
9 2kxc_B ESPF-like protein; IRTK 22.9 1E+02 0.0035 16.8 4.2 41 11-51 5-47 (48)
10 1ci6_A Transcription factor AT 21.3 38 0.0013 18.5 1.2 12 8-19 10-21 (63)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=86.13 Aligned_cols=32 Identities=50% Similarity=0.939 Sum_probs=23.1
Q ss_pred CcchhhhcchHHHHHHHHHHHHHhCCCCCCCC
Q psy12164 1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSK 32 (57)
Q Consensus 1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~ 32 (57)
++|++|||++||++|||||+++||||+|++++
T Consensus 116 ~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~~ 147 (147)
T 3dwd_A 116 WSLQEKYNSRAAALFRDKVVALAEGREWSLES 147 (147)
T ss_dssp CCHHHHHTSHHHHHHHHHHHHHHC--------
T ss_pred CCHHHhhCCHHHHHHHHHHHHHHcCCcCCCCC
Confidence 57899999999999999999999999999864
No 2
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.7e-06 Score=56.05 Aligned_cols=33 Identities=42% Similarity=0.709 Sum_probs=27.1
Q ss_pred cchhhhcchHHHHHHHHHHHHHh-------CCCCCCCCCC
Q psy12164 2 TIQQKYNTKAAALYRDKIATLAR-------GEEWDQSKSS 34 (57)
Q Consensus 2 ~i~~KYNs~aAalYRdKI~alaE-------Gr~W~~~~s~ 34 (57)
+|++||++++|++||+||.++|+ ...|.+..+|
T Consensus 107 ~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
T 2crw_A 107 DTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSSGP 146 (149)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHTTSSSCTTSCCCC
T ss_pred chhhCcCcHHHHHHHHHHHHHHHHHHHHcCCeeEeCCCCC
Confidence 68999999999999999999987 3456655544
No 3
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=98.01 E-value=2.5e-06 Score=56.20 Aligned_cols=23 Identities=43% Similarity=0.759 Sum_probs=21.6
Q ss_pred cchhhhcchHHHHHHHHHHHHHh
Q psy12164 2 TIQQKYNTKAAALYRDKIATLAR 24 (57)
Q Consensus 2 ~i~~KYNs~aAalYRdKI~alaE 24 (57)
+|++|||+++|++|||||.++|+
T Consensus 115 ~~~~KY~s~aA~~Yr~~l~~~~~ 137 (144)
T 2p57_A 115 DANTKYNSRAAQMYREKIRQLGS 137 (144)
T ss_dssp SHHHHHTSHHHHHHHHHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHHHH
Confidence 57899999999999999999986
No 4
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=97.94 E-value=7.4e-06 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.3
Q ss_pred chhhhcchHHHHHHHHHHHHHhCCCC
Q psy12164 3 IQQKYNTKAAALYRDKIATLARGEEW 28 (57)
Q Consensus 3 i~~KYNs~aAalYRdKI~alaEGr~W 28 (57)
.++||+++||++||++|.+++||++-
T Consensus 100 p~~KY~s~aA~~Yr~~L~~~v~~~~~ 125 (163)
T 3sub_A 100 PERKYRTKAADHYRKILRSIVHNVDP 125 (163)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHTTCCC
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999553
No 5
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=54.80 Aligned_cols=44 Identities=41% Similarity=0.755 Sum_probs=33.4
Q ss_pred CcchhhhcchHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcC
Q psy12164 1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNIS 44 (57)
Q Consensus 1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~s~a~~~~p~~~s 44 (57)
+++.++|++++|++|++++.++++|+.|..+.+++....|+...
T Consensus 115 ~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (329)
T 3o47_A 115 WSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPR 158 (329)
T ss_dssp CCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC--
T ss_pred CCccccccchHHHHHhhhccccccCCccccccccccccCCCCcc
Confidence 46889999999999999999999999999999988666555543
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=97.66 E-value=1.7e-05 Score=51.56 Aligned_cols=23 Identities=4% Similarity=0.104 Sum_probs=21.6
Q ss_pred cchhhhcchHHHHHHHHHHHHHh
Q psy12164 2 TIQQKYNTKAAALYRDKIATLAR 24 (57)
Q Consensus 2 ~i~~KYNs~aAalYRdKI~alaE 24 (57)
++++||++++|++|||||.++++
T Consensus 115 ~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 115 KTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp GGCHHHHSHHHHHHHHHHHHHTT
T ss_pred CHHHHHhhHHHHHHHHHHHHHHh
Confidence 68999999999999999999986
No 7
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=62.38 E-value=2.5 Score=24.02 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHH
Q psy12164 10 KAAALYRDKIATLA 23 (57)
Q Consensus 10 ~aAalYRdKI~ala 23 (57)
--|+.|||+|.+|-
T Consensus 43 E~AA~lRD~I~~L~ 56 (63)
T 1e52_A 43 EEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35889999999884
No 8
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=29.71 E-value=25 Score=20.67 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=10.5
Q ss_pred HHHHHHHHhCCC
Q psy12164 16 RDKIATLARGEE 27 (57)
Q Consensus 16 RdKI~alaEGr~ 27 (57)
|++|+||.+|..
T Consensus 3 ~E~LSAlmDGE~ 14 (90)
T 1or7_C 3 KEQLSALMDGET 14 (90)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCC
Confidence 789999999985
No 9
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=22.88 E-value=1e+02 Score=16.84 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCCcCCCccccc
Q psy12164 11 AAALYRDKIATLARG--EEWDQSKSSANSYVSSNISSSSTGSR 51 (57)
Q Consensus 11 aAalYRdKI~alaEG--r~W~~~~s~a~~~~p~~~s~~~~~~~ 51 (57)
.|...+|-|++---. ++=++-.....++.|+..+.++-+||
T Consensus 5 iaQaLk~HLAAye~ska~~~s~~~p~rPa~P~Pt~~~~~~~s~ 47 (48)
T 2kxc_B 5 VAQRLMQHLAEHGIQPARNMAEHIPPAPNWPAPTPPVQNEQSR 47 (48)
T ss_pred HHHHHHHHHHHHhhccchhhhccCCCCCCCCCCCCccccccCC
Confidence 456666666664432 33344444445577777766665665
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.32 E-value=38 Score=18.48 Aligned_cols=12 Identities=50% Similarity=0.603 Sum_probs=9.9
Q ss_pred cchHHHHHHHHH
Q psy12164 8 NTKAAALYRDKI 19 (57)
Q Consensus 8 Ns~aAalYRdKI 19 (57)
|.-||+=||+|=
T Consensus 10 Nr~AA~R~R~KK 21 (63)
T 1ci6_A 10 NKTAATRYRQKK 21 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 778999999873
Done!