Query psy12164
Match_columns 57
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:21:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12164.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12164hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 62.0 1.2 8.7E-05 23.5 0.8 14 10-23 36-49 (56)
2 d1or7c_ a.180.1.1 (C:) N-termi 53.7 3 0.00022 22.0 1.6 12 16-27 3-14 (66)
3 d2fnaa1 a.4.5.11 (A:284-356) H 19.9 12 0.00089 20.4 0.3 20 11-30 4-23 (73)
4 d2afhe1 c.37.1.10 (E:1-289) Ni 15.1 81 0.0059 18.5 3.4 26 8-33 233-258 (289)
5 d1nh2b_ a.32.1.1 (B:) Large ch 15.0 46 0.0033 16.6 1.8 17 8-24 1-17 (46)
6 d1cp2a_ c.37.1.10 (A:) Nitroge 12.7 1.1E+02 0.0078 17.6 3.4 24 8-31 230-253 (269)
7 d2juza1 a.284.1.1 (A:1-72) Unc 10.9 86 0.0063 16.9 2.3 22 1-22 1-23 (72)
8 d2jrxa1 a.284.1.1 (A:1-75) Unc 10.5 1.1E+02 0.0077 16.7 2.6 13 1-13 1-13 (75)
9 d3d19a1 a.29.13.1 (A:11-144) U 10.4 83 0.0061 18.0 2.3 17 10-26 117-133 (134)
10 d2jpqa1 a.284.1.1 (A:1-75) Hyp 10.1 97 0.007 16.9 2.4 22 1-22 1-23 (75)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=62.04 E-value=1.2 Score=23.55 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q psy12164 10 KAAALYRDKIATLA 23 (57)
Q Consensus 10 ~aAalYRdKI~ala 23 (57)
--||.|||+|..+=
T Consensus 36 E~AA~~RD~I~~l~ 49 (56)
T d1e52a_ 36 EEAAQIRDQLHQLR 49 (56)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999998763
No 2
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=53.69 E-value=3 Score=21.99 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=10.9
Q ss_pred HHHHHHHHhCCC
Q psy12164 16 RDKIATLARGEE 27 (57)
Q Consensus 16 RdKI~alaEGr~ 27 (57)
|++|+||++|..
T Consensus 3 kE~lSAL~DgE~ 14 (66)
T d1or7c_ 3 KEQLSALMDGET 14 (66)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCC
Confidence 899999999975
No 3
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=19.89 E-value=12 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q psy12164 11 AAALYRDKIATLARGEEWDQ 30 (57)
Q Consensus 11 aAalYRdKI~alaEGr~W~~ 30 (57)
+...|+.=+.|+|+|-.|++
T Consensus 4 ~~~RY~~ILkaia~G~rWs~ 23 (73)
T d2fnaa1 4 ARKRYLNIMRTLSKCGKWSD 23 (73)
T ss_dssp GHHHHHHHHHHHTTCBCHHH
T ss_pred hHHHHHHHHHHHHccCcHHH
Confidence 45689999999999988974
No 4
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=15.12 E-value=81 Score=18.48 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCC
Q psy12164 8 NTKAAALYRDKIATLARGEEWDQSKS 33 (57)
Q Consensus 8 Ns~aAalYRdKI~alaEGr~W~~~~s 33 (57)
++++|..||+--..+.|..+-..|.+
T Consensus 233 ~S~~a~~y~~LA~ei~e~~~~~~p~p 258 (289)
T d2afhe1 233 KAKQADEYRALARKVVDNKLLVIPNP 258 (289)
T ss_dssp TSHHHHHHHHHHHHHHHCCCCBCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 78999999998888888776665543
No 5
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.97 E-value=46 Score=16.57 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHHh
Q psy12164 8 NTKAAALYRDKIATLAR 24 (57)
Q Consensus 8 Ns~aAalYRdKI~alaE 24 (57)
|+.+|.+|+.-|....+
T Consensus 1 n~~v~~vY~~VI~dVI~ 17 (46)
T d1nh2b_ 1 NAEASRVYEIIVESVVN 17 (46)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 67889999988766544
No 6
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=12.70 E-value=1.1e+02 Score=17.58 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCC
Q psy12164 8 NTKAAALYRDKIATLARGEEWDQS 31 (57)
Q Consensus 8 Ns~aAalYRdKI~alaEGr~W~~~ 31 (57)
++++|..||+--..+.++..-..|
T Consensus 230 ~s~~a~~~~~La~~i~~~~~~~~p 253 (269)
T d1cp2a_ 230 TCEQAEEYRELARKVDANELFVIP 253 (269)
T ss_dssp TSHHHHHHHHHHHHHHHCCCCBCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCC
Confidence 689999999866666666443333
No 7
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=10.93 E-value=86 Score=16.95 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=13.7
Q ss_pred CcchhhhcchHHH-HHHHHHHHH
Q psy12164 1 MTIQQKYNTKAAA-LYRDKIATL 22 (57)
Q Consensus 1 ~~i~~KYNs~aAa-lYRdKI~al 22 (57)
|+|+.||.+.--+ +--|-|..|
T Consensus 1 Mpi~SKYs~~qvE~il~el~~vL 23 (72)
T d2juza1 1 MAQHSKYSDAQLSAIVNDMIAVL 23 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHH
Confidence 8999999876543 333444443
No 8
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=10.47 E-value=1.1e+02 Score=16.68 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.1
Q ss_pred CcchhhhcchHHH
Q psy12164 1 MTIQQKYNTKAAA 13 (57)
Q Consensus 1 ~~i~~KYNs~aAa 13 (57)
|+|+.||.+.--+
T Consensus 1 Mp~~SKYs~~qvE 13 (75)
T d2jrxa1 1 MPQISRYSDEQVE 13 (75)
T ss_dssp CCCTTCTTHHHHH
T ss_pred CCccccccHHHHH
Confidence 8999999876543
No 9
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=10.38 E-value=83 Score=17.99 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhCC
Q psy12164 10 KAAALYRDKIATLARGE 26 (57)
Q Consensus 10 ~aAalYRdKI~alaEGr 26 (57)
|=|+.|..+|..+.+|+
T Consensus 117 REae~Yl~~L~~l~~g~ 133 (134)
T d3d19a1 117 READYFRKRLIQLNEGK 133 (134)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 34788888999888886
No 10
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=10.06 E-value=97 Score=16.86 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=13.7
Q ss_pred CcchhhhcchHHH-HHHHHHHHH
Q psy12164 1 MTIQQKYNTKAAA-LYRDKIATL 22 (57)
Q Consensus 1 ~~i~~KYNs~aAa-lYRdKI~al 22 (57)
|+|+.||.+.--+ +--|-|..|
T Consensus 1 Mpi~SKYs~~qvE~il~el~~vL 23 (75)
T d2jpqa1 1 MPITSKYTDEQVEKILAEVALVL 23 (75)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHH
Confidence 8999999876543 333444444
Done!