RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12164
         (57 letters)



>gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional.
          Length = 239

 Score = 31.1 bits (71), Expect = 0.014
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 14  LYRDKIATLARGEEWDQSKSSANSYVS 40
           L RDK+  LARG E+   + S +  +S
Sbjct: 181 LSRDKLMNLARGREYSAMERSIDVQIS 207


>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
           small GTPase, ARF.  Putative zinc fingers with GTPase
           activating proteins (GAPs) towards the small GTPase,
           Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
           ARD1 but not ARFs.
          Length = 119

 Score = 24.2 bits (53), Expect = 3.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 3   IQQKYNTKAAALYRDKIATLARGEEW 28
            QQKY +  AA Y +K+       E 
Sbjct: 94  DQQKYESFIAAKYEEKLFVPPESAEE 119


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.302    0.113    0.287 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,375,054
Number of extensions: 132335
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 57
Length of database: 10,937,602
Length adjustment: 29
Effective length of query: 28
Effective length of database: 9,651,336
Effective search space: 270237408
Effective search space used: 270237408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.2 bits)