RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12165
(537 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 38.5 bits (89), Expect = 0.008
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 147 AHDNPNTEVDEPQMNEF--GESVHICHL--CQKQFKQNWLLQKHKKTC-KGPKRPTSPLP 201
AH +D P + C + C K++K L+ H + K +P P
Sbjct: 328 AHGGERN-IDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSP 386
Query: 202 EP-----DEDGIFRCKKCVKVFVNPDIYKKHLKHSH 232
E +D +RC+ C K + N + K H KHSH
Sbjct: 387 EKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 36.9 bits (85), Expect = 0.024
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 26/167 (15%)
Query: 209 FRCKK--CVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLHHMKTEHKDNE-- 264
F+C K C + + KKH K H C CI L T
Sbjct: 152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGG 211
Query: 265 --------EYKCLIPGCKKYFRTKLDCQKHCREHKTVTSRC----PTNYCNFCADLFTNR 312
C+ CK YF + ++HCR C P Y F +
Sbjct: 212 LEEEGFKGHPLCIF--CKIYFYDDDELRRHCRLRHEACHICDMVGPIRY-----QYFKSY 264
Query: 313 KKLWLHLKSTHKDLT--NCMCSACFVVEDNLSALEAHVAAKHKAIIK 357
+ L H ++ H T C C+V + L H+ HK +
Sbjct: 265 EDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTE-LLEHLTRFHKVNAR 310
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 30.6 bits (69), Expect = 0.85
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 359 PYACRICARLLGNGVKVSEHIKLHGEHLVNCRVCGSIFHSEPELKVHL 406
PY C +C + V + +HI+ + EH C VCG F + H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIR-YTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 31.4 bits (72), Expect = 0.93
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 328 NCMCSACFVVEDNLSALEAHVAAKHKAIIKKPYACRICARLLGNGVKVSEHIK 380
+A F SA +A +AAK A P+ RI L G+G+++ I+
Sbjct: 103 KTNVTAIF------SAAQALLAAKAGATYVSPFVGRI-DDLGGDGMELIREIR 148
>gnl|CDD|176676 cd07253, Glo_EDI_BRP_like_2, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The proteins of this family share three
conserved metal binding amino acids with the type I
extradiol dioxygenases, which shows no domain swapping.
Length = 125
Score = 29.9 bits (68), Expect = 1.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 334 CFVVEDNLSALEAHVAAKHKAIIKKPYAC 362
C + E + L AH+ A I + P
Sbjct: 72 CLITEPPIDELVAHLEAHGVPIEEGPVPR 100
>gnl|CDD|217969 pfam04216, FdhE, Protein involved in formate dehydrogenase
formation. The function of these proteins is unknown.
They may possibly be involved in the formation of
formate dehydrogenase.
Length = 283
Score = 30.4 bits (69), Expect = 2.2
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 25/71 (35%)
Query: 428 CDLCSKEWPSRKFMWQHLIRSHKAVAGLACGVCLKISETYEALALH-LDQAHPGYFAEEV 486
C LC EW H +R C C + + LA L++ PG AE
Sbjct: 194 CSLCETEW--------HFVRVK-------CTNC----GSTKGLAYWSLEEGEPGVRAE-- 232
Query: 487 DNPTCEVCGRY 497
TC+ C Y
Sbjct: 233 ---TCDTCHSY 240
>gnl|CDD|213351 cd12791, RasGAP_plexin_B3, Ras-GTPase Activating Domain of
plexin-B3. Plexins form a conserved family of
transmembrane receptors for semaphorins and may be the
ancestors of semaphorins. Plexins are divided into four
types (A-D) according to sequence similarity. Plexin-B3
is the receptor of semaphorin 5A. It is a highly potent
stimulator of neurite outgrowth of primary murine
cerebellar neurons. Plexin-B3 has been linked to verbal
performance and white matter volume in human brain.
Furthermore, Sema5A and plexin-B3 have been implicated
in the progression of various types of cancer. They
play an important role in the invasion and metastasis
of gastric carcinoma. The protein and mRNA expression
of Sema5A and its receptor plexin-B3 increased
gradually in non-neoplastic mucosa, primary gastric
carcinoma, and lymph node metastasis, and their
expression is correlated. The stimulation of plexin-B3
by Sema5A binding in human glioma cells results in the
inhibition of cell migration and invasion. Plexins
contain a C-terminal RasGAP domain, which functions as
an enhancer of the hydrolysis of GTP that is bound to
Ras-GTPases. Plexins display GAP activity towards the
Ras homolog Rap. Although the Rho (Ras homolog) GTPases
are most closely related to members of the Ras family,
RhoGAP and RasGAP show no sequence homology at their
amino acid level. RasGTPases function as molecular
switches in a large number of of signaling pathways.
When bound to GTP they are in the on state and when
bound to GDP they are in the off state. The RasGAP
domain speeds up the hydrolysis of GTP in Ras-like
proteins acting as a negative regulator.
Length = 397
Score = 29.8 bits (67), Expect = 3.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 51 LNTLLDDNLSLLK--HVEEEHPTMQRRYSCQVDTMEAIKEHRKTEH 94
L+ LL+ L LL H EE P+ +R C V ++ ++ H K E+
Sbjct: 47 LSNLLNSKLFLLTLIHTLEEQPSFSQRDRCHVASLLSLALHGKLEY 92
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 29.4 bits (66), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 96 MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
+Y+C+ C KYY T L +H + HP
Sbjct: 158 VYICEFCLKYYGSQTSLVRHRKKCSLQHP 186
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.8 bits (57), Expect = 5.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 169 ICHLCQKQFKQNWLLQKHKKTC 190
C C K F + L++H +T
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|165303 PHA03002, PHA03002, Hypothetical protein; Provisional.
Length = 679
Score = 29.3 bits (66), Expect = 6.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 288 REHKTVTSRCPTNYCNFCADLFTNRKKLWLHLKSTHKDLTNCM 330
E+K + C + C+ K +H +S+ DL NC+
Sbjct: 455 LENKEIMLVCNCSNCSNSKINHYKSKNSTIHKRSSDDDLINCL 497
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 29.3 bits (65), Expect = 6.3
Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 20/155 (12%)
Query: 97 YVCDLCPKYYSRSTHLWKHVN-RVHKGHPDVTC----RICSKVSSSRGHLEKH--LIAHD 149
C +SRS+ L +H+ H G +C K+ S L++H L
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349
Query: 150 NPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKGPK-------RPTSPLPE 202
+P E ++F ++ Q + L K L
Sbjct: 350 SPAKEKLLNSSSKFSPLLNNEPP-QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 203 ----PDEDGIFRCKKCVKVFVNPDIYKKHLKHSHT 233
+ C K F N K HT
Sbjct: 409 ITHLSFRPYNCKNPPCSKSF-NRHYNLIPHKKIHT 442
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 28.7 bits (64), Expect = 7.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 198 SPLPEP--DEDGIFRCKKCVKVFVNPDIYKKHLKHSHTK 234
SP PEP ++ C+ C+K +HL +
Sbjct: 36 SPYPEPYASCTKLYICEYCLKYMRKKKSLLRHLAKCDIR 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.441
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,174,292
Number of extensions: 2412407
Number of successful extensions: 2134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 62
Length of query: 537
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 435
Effective length of database: 6,413,494
Effective search space: 2789869890
Effective search space used: 2789869890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)