RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12165
(537 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 89/572 (15%), Positives = 156/572 (27%), Gaps = 210/572 (36%)
Query: 88 EHRKTEHAMYVCDLCPKYYSRSTHLWKHVNRV----HKGHPDVTCRICSK-VSSSRGHL- 141
H EH + V T + +++ +K P+ T + ++ L
Sbjct: 12 SHGSLEHVLLV----------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 142 EKHL--IAHDNPNTEVDEPQ------MNEF------GESVH--ICHLCQ----KQFKQNW 181
K L ++ ++V + + EF G +H L Q K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 182 LLQKHKKTCKGPKRPTSPLPEPDEDGIFRC--KKCVKVFV------NPDIYKKHLKHSHT 233
L++ + KRP +FR + ++ N D Y + L+ +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 234 --KAYCEVCITAPGYETKVELLHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREHK 291
I + E L + D +K F L+ +
Sbjct: 179 TYHVLVGDLI-----KFSAETLSELIRTTLD----------AEKVFTQGLNILEWLENPS 223
Query: 292 TVTSR---------CP-------TNYCNFCADLFTNRKKLWLHLKSTHKDLTNCMCSACF 335
+ CP +Y K L T +L + + A
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTA-------KLLGF----TPGELRSYLKGATG 272
Query: 336 VVEDNLSAL--------EAHVAAKHKAIIKKPYACRICARLLGNGVKVSEHIKLHGEHLV 387
+ ++A+ E+ + KAI V I G
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAI------------------TVLFFI---G---- 307
Query: 388 NCRVCGSIFHSEPELKVHLEEHTDVPETKEQKPRPELPVT----------CDLCSKEWPS 437
R C + P + D E E P P L ++ + + P+
Sbjct: 308 -VR-CYEAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 438 RKFMWQH----LIRSHKA--VAGLA---CGVCLKISETYEALALHLDQAH-PGYFAEE-- 485
K L+ K V+G G+ L + +A + LDQ+ P F+E
Sbjct: 363 GK----QVEISLVNGAKNLVVSGPPQSLYGLNLTL-RKAKAPS-GLDQSRIP--FSERKL 414
Query: 486 --------VDNPTCEVCGRYH-----NARPKLE------------SHLAVHV-----GLD 515
V +P +H A + + + V G D
Sbjct: 415 KFSNRFLPVASP-------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 516 ---KSQTLLHK---CI------WTR--HIRAT 533
S ++ + CI W +AT
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 7e-07
Identities = 56/402 (13%), Positives = 119/402 (29%), Gaps = 118/402 (29%)
Query: 143 KHLIAHDNPNTEVD----------EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKG 192
H+I + + E + +F E V + + +L+ K +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----RINY--KFLMSPIKTEQRQ 104
Query: 193 PKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVEL 252
P T E + R +VF ++ + +A E+ P V L
Sbjct: 105 PSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RP--AKNV-L 154
Query: 253 LHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREHKTVTSRCPTNYCNFCADLFTNR 312
+ + G K T + C +K C +F
Sbjct: 155 IDGVL--------------GSGK---TWVALDV-CLSYKVQ--------CKMDFKIF--- 185
Query: 313 KKLWLHLKS--THKDLTNCMCSACFVVEDNLSALEAHV-----------AAKHKAIIKKP 359
WL+LK+ + + + + + ++ N ++ H A + + KP
Sbjct: 186 ---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 360 YACRICARLLGNGVKVSEHIKLHGEHLVNCRV-----CGSIF---HSEPELKVHLEEHTD 411
Y C +L N V+ ++ ++C++ + + + L+ H+
Sbjct: 243 Y--ENCLLVLLN-VQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 412 V---PETKE----------QKPRPEL----PVTCDLCS---KEWPSRKFMWQHLIRSHKA 451
E K Q E+ P + + ++ + W+H+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 452 VAGLACGVCLKISET---YEALALHLDQAHPGYFAEEVDNPT 490
+ L+ +E ++ L++ F PT
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSV---------FPPSAHIPT 389
Score = 50.6 bits (120), Expect = 1e-06
Identities = 66/491 (13%), Positives = 132/491 (26%), Gaps = 137/491 (27%)
Query: 18 KVFRDNLSLLK-HVEEEHPTMQRRYSCQ---------VH-------IILVLNTLLDDNL- 59
+++ DN K +V P ++ R + + + L+ L +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 60 -------------------SLLKHVEEEHPTMQRRYSCQVDTMEAIKEHRKTEHAMYVCD 100
++L+ +++ + ++ + D IK + A
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 101 LCPKYYSRS----THLW--KHVNRVHKGHPDVTCRI------CSKVSSSRGHLEKHLIAH 148
L K Y ++ K N +++C+I H+
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 149 DNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKK----TCKGPKRPTSPL---- 200
+ T + E + +L + + +P
Sbjct: 293 HHSMTLTPD-------EVKSLL--------LKYLDCRPQDLPREVLTT-----NPRRLSI 332
Query: 201 -PEPDEDGIFR--------CKK---CVKVFVN---PDIYKKHL-------KHSH--TKAY 236
E DG+ C K ++ +N P Y+K +H T
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 237 CEVCITAPGYETK--VELLHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREHKTVT 294
+ + V LH K +E IP Y K+ + H+++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIV 450
Query: 295 SR--CPTNYCNFCADLFTNRKKLWL------HLKSTHKDLTNCMCSACFVVEDNLSALEA 346
P + + DL + HLK+ + F+ + LE
Sbjct: 451 DHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---DFRFLE- 504
Query: 347 HVAAKHKAIIKKPYACRICAR---LLGNGVKVSEHIKLHGEHLVNCRVCGSI--FHSEPE 401
K I A L +I + R+ +I F + E
Sbjct: 505 ---QK---IRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYERLVNAILDFLPKIE 556
Query: 402 LKVHLEEHTDV 412
+ ++TD+
Sbjct: 557 ENLICSKYTDL 567
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 44.4 bits (106), Expect = 4e-06
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTE 154
Y C + C + +S+S L +H+ R+H G CRIC + S HL H+ H T
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----T- 58
Query: 155 VDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
GE C +C ++F ++ ++H K
Sbjct: 59 ---------GEKPFACDICGRKFARSDERKRHTKI 84
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
+ C +C + +SRS HL H+ R H G C IC + + ++H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 29.0 bits (66), Expect = 1.0
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 28/103 (27%)
Query: 131 CSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTC 190
C + S G L +H+ H T G+ C +C + F ++ L H +T
Sbjct: 12 CDRRFSQSGSLTRHIRIH----T----------GQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 191 KGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHT 233
G K P F C C + F D K+H K H
Sbjct: 58 TGEK--------P-----FACDICGRKFARSDERKRHTK-IHL 86
Score = 27.0 bits (61), Expect = 4.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 358 KPYACRICARLLGNGVKVSEHIKLH-GEHLVNCRVCGSIFHSEPELKVHLEEHT 410
KP+ CRIC R ++ HI+ H GE C +CG F E K H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 42.1 bits (100), Expect = 2e-05
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
+ C +C + +SRS HL H+ R H G C IC + + ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQ-------- 54
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKK 188
+ ++ +N+ L+
Sbjct: 55 -------HILPILEDKVEELLSKNYHLENEVA 79
Score = 29.4 bits (67), Expect = 0.75
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 21/81 (25%)
Query: 358 KPYACRICARLLGNGVKVSEHIKLH-----GEHLVNCRVCGSIFHSEPELKVHLEEHTDV 412
KP+ CRIC S+H+ H GE C +CG F E K H +
Sbjct: 2 KPFQCRIC----MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-- 55
Query: 413 PETKEQKPRPELPVTCDLCSK 433
LP+ D +
Sbjct: 56 ----------ILPILEDKVEE 66
Score = 28.6 bits (65), Expect = 1.1
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 28/107 (26%)
Query: 127 TCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKH 186
CRIC + S HL H+ H T GE C +C ++F ++ ++H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTH----T----------GEKPFACDICGRKFARSDERKRH 50
Query: 187 KKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHT 233
+ P K ++ + +
Sbjct: 51 RDIQHI--LP------------ILEDKVEELLSKNYHLENEVARLKK 83
Score = 27.1 bits (61), Expect = 4.2
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 97 YVCDLCPKYYSRSTHLWKHVN--RVHKG 122
+ D + S++ HL V + G
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVG 86
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 40.1 bits (95), Expect = 1e-04
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
+ C++C K +SR L H R H G C+ C ++ L KHL H
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS------- 60
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
E C +C + + L H ++
Sbjct: 61 -------DERPFKCQICPYASRNSSQLTVHLRS 86
Score = 33.6 bits (78), Expect = 0.024
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y C C + S+ L KH R+H C+IC S + L HL +H
Sbjct: 37 YKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 40.2 bits (95), Expect = 3e-04
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 31/140 (22%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
C C K + +L H NR H G C C K + +L +H
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEH------------ 54
Query: 157 EPQMNEF---GESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKK 213
+ E V C +CQ+ F++ L+ H + G P ++C
Sbjct: 55 --EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM-P------------YKCSS 99
Query: 214 CVKVFVNPDIYKKHLKHSHT 233
C + F+ + H+ H+
Sbjct: 100 CSQQFMQKKDLQSHMIKLHS 119
Score = 27.1 bits (61), Expect = 6.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C + + + L H+ ++H G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSG 120
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 38.1 bits (89), Expect = 4e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 87 KEHRKTEHAMYVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKH 144
+ + Y C + C + +SRS L +H+ R+H G CRIC + S HL H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 145 LIAH 148
+ H
Sbjct: 69 IRTH 72
Score = 26.9 bits (60), Expect = 3.7
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 173 CQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSH 232
C ++F ++ L +H + G K F+C+ C++ F D H++ +H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP-------------FQCRICMRNFSRSDHLTTHIR-TH 72
Query: 233 T 233
T
Sbjct: 73 T 73
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 39.0 bits (92), Expect = 4e-04
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
C++C K + HL +H H G +C +C + + H+ +HD
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD------- 59
Query: 157 EPQMNEFGESV--HICHLCQKQFKQNWLLQKHKK 188
G +IC C K F + L H K
Sbjct: 60 -------GSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 32.8 bits (76), Expect = 0.047
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 127 TCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKH 186
C IC K+ HL +H ++H GE + C +C +FK+ + H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHS--------------GEKPYSCPVCGLRFKRKDRMSYH 54
Query: 187 KKTCKG-PKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHT 233
++ G +P + C+ C K F PD H+K H+
Sbjct: 55 VRSHDGSVGKP------------YICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 30.9 bits (71), Expect = 0.21
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y+C C K +SR HL H+ +VH G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 40.0 bits (94), Expect = 5e-04
Identities = 35/191 (18%), Positives = 52/191 (27%), Gaps = 50/191 (26%)
Query: 102 CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMN 161
+ + + C + S+ L H+ V P+ N
Sbjct: 3 SGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTME-----HVGGPEQN 56
Query: 162 EFGESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKK--CVKVFV 219
C K FK + L H + G K P F C C K+F
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK-P------------FPCPFPGCGKIF- 102
Query: 220 NPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLHHMKTEHKDNEEYKCLIPGCKKYFRT 279
++LK H +T H + +KC GC + F
Sbjct: 103 ---ARSENLK------------------------IHKRT-HTGEKPFKCEFEGCDRRFAN 134
Query: 280 KLDCQKHCREH 290
D +KH H
Sbjct: 135 SSDRKKHMHVH 145
Score = 33.4 bits (77), Expect = 0.072
Identities = 35/150 (23%), Positives = 48/150 (32%), Gaps = 42/150 (28%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGH---------PDVTCRICSKVSSSRGHLEKHLIA 147
C + +S L HV + C K ++ L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 148 HDNPNTEVDEPQMNEFGESVHICHL--CQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDE 205
H T GE C C K F ++ L+ HK+T G K P
Sbjct: 85 H----T----------GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK-P--------- 120
Query: 206 DGIFRC--KKCVKVFVNPDIYKKHLKHSHT 233
F+C + C + F N KKH H HT
Sbjct: 121 ---FKCEFEGCDRRFANSSDRKKH-MHVHT 146
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.0 bits (90), Expect = 5e-04
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 24/129 (18%)
Query: 107 SRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGES 166
S + + + G C+ CS + L H MNE G
Sbjct: 2 SSGSSGKLYG-SIFTGASKFRCKDCSAAYDTLVELTVH---------------MNETGHY 45
Query: 167 VHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKK 226
H + W + + + + + + +C C F +
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ-------KVLKCMYCGHSFESLQDLSV 98
Query: 227 HL-KHSHTK 234
H+ K H +
Sbjct: 99 HMIKTKHYQ 107
Score = 34.0 bits (77), Expect = 0.028
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 382 HGEHLVNCRVCGSIFHSEPELKVHLEEHTDVPETKEQKPRPELPVTCDLCSKEWPSRKFM 441
G C+ C + + + EL VH+ ET + + P ++ +
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMN------ETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 442 WQHLIRSHKAVAGLACGVCLKISETYEALALHLDQAHP 479
+ A L C C E+ + L++H+ +
Sbjct: 69 LEME-GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 33.6 bits (76), Expect = 0.036
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 12/103 (11%)
Query: 86 IKEHRKTEHAM--YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEK 143
K + + C C Y L H+N GH + R +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN--ETGHYRDDNHETDNNNPKRWSKPR 64
Query: 144 HLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKH 186
+ E + V C C F+ L H
Sbjct: 65 KRSLLEMEGKED--------AQKVLKCMYCGHSFESLQDLSVH 99
Score = 32.4 bits (73), Expect = 0.093
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 209 FRCKKCVKVFVNPDIYKKHLKHSHTKAY----CEVCITAPGYETKVELLHHMKTEHKDNE 264
FRCK C + H+ + + + + L M+ + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 265 EYKCLIPGCKKYFRTKLDCQKHCREHK 291
KC+ C F + D H + K
Sbjct: 80 VLKCMY--CGHSFESLQDLSVHMIKTK 104
Score = 30.9 bits (69), Expect = 0.38
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 5/89 (5%)
Query: 257 KTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREHKTVTSRCPTNY-CNFCADLFTNRKKL 315
+ +++C C + T ++ H E N ++ L
Sbjct: 11 GSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 316 WLH--LKSTHKDLTNCMCSACFVVEDNLS 342
+ K L C F +LS
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLS 97
Score = 29.0 bits (64), Expect = 1.4
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 329 CM-CSACFVVEDNLSALEAHVAAKH--KAIIKKPYACRICARLLGNGVKVSEHIKLH-GE 384
C CSA + D L L H+ + + + E +
Sbjct: 22 CKDCSAAY---DTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 385 HLVNCRVCGSIFHSEPELKVHLEEHT 410
++ C CG F S +L VH+ +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 27.8 bits (61), Expect = 3.7
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 83 MEAIKEHRKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLE 142
M +R H + R L + + C C S L
Sbjct: 39 MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLS 97
Query: 143 KHLIAH 148
H+I
Sbjct: 98 VHMIKT 103
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 37.6 bits (88), Expect = 0.001
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 23/107 (21%)
Query: 87 KEHRKTEHAMYVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLE 142
E R+ + CD C K Y++S+HL H+ R H G C C + L
Sbjct: 10 LEKRRI----HYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 143 KHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
+H H G C +C + F ++ L H K
Sbjct: 65 RHYRKHT--------------GAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 37.2 bits (87), Expect = 0.001
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDN 150
Y C C ++RS L +H R H G C +C++ S HL H+ H N
Sbjct: 46 YKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 33.8 bits (78), Expect = 0.021
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 35/129 (27%)
Query: 107 SRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGES 166
S + R+H C+KV + HL+ HL H GE
Sbjct: 4 GSSGPDLEKR-RIHYCDYPG----CTKVYTKSSHLKAHLRTHT--------------GEK 44
Query: 167 VHICHL--CQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIY 224
+ C C +F ++ L +H + G K F+C C + F D
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKP-------------FQCGVCNRSFSRSDHL 91
Query: 225 KKHLKHSHT 233
H+K H
Sbjct: 92 ALHMK-RHQ 99
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSS 137
Y+C C K +SR HL H+ +VH C++ SS
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.4 bits (59), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 209 FRCKKCVKVFVNPDIYKKHLKHSHT--KAY-CEVC 240
+ C+ C K F PD H+K HT + + C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 37.8 bits (89), Expect = 0.001
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
++C C +++++S +L H R H TC IC K + HL H H
Sbjct: 18 FICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS------- 69
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
E C C K F Q+ L HK
Sbjct: 70 -------KEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 31.3 bits (72), Expect = 0.20
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y CD+C K + R HL H +H C+ C K L H H
Sbjct: 46 YTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 38.7 bits (91), Expect = 0.001
Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 68/206 (33%)
Query: 97 YVCDLCPKYYSRSTHLWKHVN--RVHKGHPDVTCRIC-----SKVSSSRGHLEKHLIAHD 149
D C + + L H+N +H + C + ++ L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH- 62
Query: 150 NPNTEVDEPQMNEFGESVHICHL--CQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDG 207
T GE H C C+K + + L+ H ++ G K P
Sbjct: 63 ---T----------GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK-P----------- 97
Query: 208 IFRCK--KCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLHHMKTEHKDNEE 265
+ C+ C K F N KH +H+ NE+
Sbjct: 98 -YMCEHEGCSKAFSNASDRAKHQNRTHS-----------------------------NEK 127
Query: 266 -YKCLIPGCKKYFRTKLDCQKHCREH 290
Y C +PGC K + +KH +
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHV-NRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y C +C + Y+ ++ +H + C C K + + ++ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 32.5 bits (75), Expect = 0.027
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 116 VNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQK 175
+ +G C++CS+V + + +H + V+ C C K
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR------------NVKVYPCPFCFK 48
Query: 176 QFKQNWLLQKHKKT 189
+F + + H K
Sbjct: 49 EFTRKDNMTAHVKI 62
Score = 29.8 bits (68), Expect = 0.32
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 89 HRKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKG 122
K +Y C C K ++R ++ HV ++
Sbjct: 33 SHKRNVKVYPCPFCFKEFTRKDNMTAHV-KIIHK 65
Score = 26.7 bits (60), Expect = 3.3
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKGPK-RPTSPLPEPDEDGIFRCKKCVKVFVNPD 222
GE + C +C + + +H T + + C C K F D
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV------------YPCPFCFKEFTRKD 54
Query: 223 IYKKHLKHSH 232
H+K H
Sbjct: 55 NMTAHVKIIH 64
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 38.6 bits (91), Expect = 0.002
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
Y C C K +SRS HL +H R H G C C K S + L +H H T
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----T--- 73
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVK 216
GE + C C K F Q L+ H++T G K P + C +C K
Sbjct: 74 -------GEKPYKCPECGKSFSQRANLRAHQRTHTGEK-P------------YACPECGK 113
Query: 217 VF 218
F
Sbjct: 114 SF 115
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/73 (15%), Positives = 17/73 (23%), Gaps = 11/73 (15%)
Query: 127 TCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKH 186
C IC + L H H C C K+F++ + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAE-----------TVAALRFPCEFCGKRFEKPDSVAAH 57
Query: 187 KKTCKGPKRPTSP 199
+
Sbjct: 58 RSKSHPALLLAPQ 70
Score = 33.5 bits (77), Expect = 0.016
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVH---KGHPDVTCRICSKVSSSRGHLEKHLIAH 148
C++C + L H R H C C K + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 33.1 bits (76), Expect = 0.030
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKK--TCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNP 221
G S C +C +Q L H++ F C+ C K F P
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR------------FPCEFCGKRFEKP 51
Query: 222 DIYKKHLKHSHTKAYCEVC 240
D H SH
Sbjct: 52 DSVAAHRSKSHPALLLAPQ 70
Score = 32.8 bits (75), Expect = 0.041
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 389 CRVCGSIFHSEPELKVHLEEHTDVPETKEQKPRPELPVTCDLCSKEWPSRKFMWQHLIRS 448
C +CG + L H +H + L C+ C K + + H +S
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAE--------TVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 449 HKAVAGLACGVCLKIS 464
H A+ S
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 32.0 bits (73), Expect = 0.075
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 358 KPYACRICARLLGNGVKVSEHIKLH----GEHLVNCRVCGSIFHSEPELKVHLEEHTDVP 413
C IC ++ H + H C CG F + H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 414 ETKEQKP 420
Q+
Sbjct: 66 LLAPQES 72
Score = 29.7 bits (67), Expect = 0.50
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVS 135
+ C+ C K + + + H ++ H S
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 28.1 bits (63), Expect = 1.6
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 266 YKCLIPGCKKYFRTKLDCQKHCREHKTVTSRCPTNYCNFCADLFTNRKKLWLHLKSTHKD 325
+C I C R K H R+H + C FC F + H +H
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALRFP-CEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 326 LTNCMCSAC 334
L +
Sbjct: 65 LLLAPQESS 73
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 37.1 bits (87), Expect = 0.002
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 97 YVCD--LCPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLEKHLIAHDNPN 152
++C C K Y + +HL H R H G C C + S L++H H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH---- 61
Query: 153 TEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
T G C CQ++F ++ L+ H +T
Sbjct: 62 T----------GVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 33.6 bits (78), Expect = 0.042
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLEKHLIAH 148
+ C C + +SRS HL H R H G +CR C K + L +H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 27.1 bits (61), Expect = 6.2
Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 58/162 (35%)
Query: 131 CSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHL--CQKQFKQNWLLQKHKK 188
C+K HL+ H H T GE + C C+++F ++ L++H++
Sbjct: 14 CNKRYFKLSHLQMHSRKH----T----------GEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 189 TCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYET 248
G K P F+CK C + F + H
Sbjct: 60 RHTGVK--------P-----FQCKTCQRKFS---------RSDH---------------- 81
Query: 249 KVELLHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREH 290
L H +T H + + C P C+K F + +H H
Sbjct: 82 ---LKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 36.2 bits (85), Expect = 0.002
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
+ C +C K + RS+ L H +H C+ C K + ++KH H
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT------- 53
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
GE H C +C K F Q+ L H +
Sbjct: 54 -------GEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 32.0 bits (74), Expect = 0.069
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y C C K + + + + KH +H G C++C K S +L H H
Sbjct: 30 YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 36.4 bits (85), Expect = 0.002
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 90 RKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLEKHLIA 147
++T C K Y++S+HL H+ R H G C C + L +H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 148 HDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
H G C C + F ++ L H K
Sbjct: 60 HT--------------GHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 34.4 bits (80), Expect = 0.010
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y CD C ++RS L +H R H GH C+ C + S HL H+ H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 26.7 bits (60), Expect = 6.4
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 29/112 (25%)
Query: 120 HKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHL--CQKQF 177
C K + HL+ HL H GE + C C +F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT--------------GEKPYHCDWDGCGWKF 47
Query: 178 KQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLK 229
++ L +H + G + F+C+KC + F D H+K
Sbjct: 48 ARSDELTRHYRKHTGHRP-------------FQCQKCDRAFSRSDHLALHMK 86
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.0 bits (82), Expect = 0.006
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 349 AAKHKAIIKKPYACRICARLLGNGVKVSEHIKLHGEHLVNCRVCGSIFHSEPELKVHLEE 408
+ K+ Y CR+C L + ++ H +L V C C F S + H +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV-CPYCSLRFFSPELKQEHESK 64
Query: 409 HTDVPETKEQKPRPELPVTCDLCSKEWPSRKFMWQHLIRSH 449
+TC C + + S +W+H + H
Sbjct: 65 CEYK------------KLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 33.0 bits (74), Expect = 0.066
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 195 RPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLH 254
+S + +++C+ C + H + A C C L
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYC----SLRFFSPELK 58
Query: 255 HMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKH 286
+ ++ CL C + F++ +H
Sbjct: 59 QEHESKCEYKKLTCLE--CMRTFKSSFSIWRH 88
Score = 31.4 bits (70), Expect = 0.19
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDI 223
+ V+ C LC + H++ C+ C C F +P++
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYCSLRFFSPEL 57
Query: 224 YKKHLKHSHTKAY-CEVCITAPGYETKVELLHHMKTEHKDN 263
++H K C C+ +++ + H H N
Sbjct: 58 KQEHESKCEYKKLTCLECMRT--FKSSFSIWRHQVEVHNQN 96
Score = 30.6 bits (68), Expect = 0.34
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 376 SEHIKLHGEHLVNCRVCGSIFHSEPELKVHLEEHTDVPETKEQKPRPELPVTCDLCSKEW 435
S + + + CR+C + S E H + C CS +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA-------------AVCPYCSLRF 52
Query: 436 PSRKFMWQHLIRSHKAVAGLACGVCLKISETYEALALHLDQAH 478
S + +H S L C C++ ++ ++ H + H
Sbjct: 53 FSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 28.7 bits (63), Expect = 1.9
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 121 KGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQN 180
+ CR+C+ SS H N +C C +F
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRN----------------AAVCPYCSLRFFSP 55
Query: 181 WLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTK 234
L Q+H+ C+ K C +C++ F + +H H +
Sbjct: 56 ELKQEHESKCEYKK--------------LTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 27.9 bits (61), Expect = 3.3
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 58 NLSLLKHVEEEHPTMQRRYSCQVDTMEAIKEHRKTEHAMYVCDLCPKYYSRSTHLWKHVN 117
S VE + R + ++ ++ H + VC C + +H
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH-- 61
Query: 118 RVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNT 153
+ +TC C + S + +H + N N
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNN 97
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKH 144
+VC++C + ++R HL +H R H C +C++ + R L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 30.5 bits (70), Expect = 0.16
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C LC + ++R L +H ++H G
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSG 56
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.3 bits (78), Expect = 0.007
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y+C+ C + + L KH+ R H C C+ ++G+L KH+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.9 bits (64), Expect = 0.49
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 14/69 (20%)
Query: 127 TCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKH 186
C C L+KH+ H + C C FK L KH
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHT--------------DVRPYHCTYCNFSFKTKGNLTKH 48
Query: 187 KKTCKGPKR 195
K+ K+
Sbjct: 49 MKSKAHSKK 57
Score = 26.6 bits (58), Expect = 3.2
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 360 YACRICARLLGNGVKVSEHIKLH-GEHLVNCRVCGSIFHSEPELKVHLEEHT 410
Y C C + +HI+ H +C C F ++ L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 33.6 bits (78), Expect = 0.014
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y CD C + +L H VH G C IC + +L+ H H
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 34.8 bits (81), Expect = 0.018
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLEKHLIAHDNPNTE 154
+VC C K + S+ L +H VH G C C K S +L H+ H T
Sbjct: 35 HVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH----T- 88
Query: 155 VDEPQMNEFGESVHICHL--CQKQFKQNWLLQKHKKT 189
G+ ++C C K+F Q+ L+ H T
Sbjct: 89 ---------GDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 32.1 bits (74), Expect = 0.12
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVH--KGHPDVTCRICSKVSSSRGHLEKHLIAHDNPN 152
C C K + ++ + KH+ H + H C C K L++H + H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHL-HTHGPRVH---VCAECGKAFVESSKLKRHQLVH---- 57
Query: 153 TEVDEPQMNEFGESVHICHL--CQKQFKQNWLLQKHKKT 189
T GE C C K+F ++ L+ H +
Sbjct: 58 T----------GEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 27.5 bits (62), Expect = 4.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTCRI--CSKVSSSRGHLEKHLIAH 148
+ C C K +S +L HV R+H G C C+K + +L+ H++ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 33.2 bits (77), Expect = 0.022
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
Y C C K +SRS+ L +H RVH G C C K S L H H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 32.9 bits (76), Expect = 0.030
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
C C S L H R+H C CS + +L KH+
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 25.5 bits (57), Expect = 9.6
Identities = 18/82 (21%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 118 RVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQF 177
C CS SS+ L H H + C+ C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHC--------------TDRPFKCNYCSFDT 47
Query: 178 KQNWLLQKHKKTCKGPKRPTSP 199
KQ L KH K G S
Sbjct: 48 KQPSNLSKHMKKFHGDMSGPSS 69
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 32.5 bits (75), Expect = 0.039
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPD--VTCRICSKVSSSRGHLEKHL 145
Y C +C +++S + H+ C C V + + L HL
Sbjct: 16 YECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 31.7 bits (73), Expect = 0.074
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKG-PKRPTSPLPEPDEDGIFRCKKCVKVFVNPD 222
GE + C++C +F Q+ ++ H F C C V
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAK------------FHCPHCDTVIARKS 59
Query: 223 IYKKHLKHSHT 233
HL+ H+
Sbjct: 60 DLGVHLRKQHS 70
Score = 30.6 bits (70), Expect = 0.20
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 13/79 (16%)
Query: 111 HLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHIC 170
R H G C IC + G ++ H++ +TE C
Sbjct: 2 SSGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQK---HTENVAK---------FHC 48
Query: 171 HLCQKQFKQNWLLQKHKKT 189
C + L H +
Sbjct: 49 PHCDTVIARKSDLGVHLRK 67
Score = 29.4 bits (67), Expect = 0.55
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C C +R + L H+ + H
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSY 71
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 33.0 bits (75), Expect = 0.042
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 92 TEHAMYVCDLCPKYYSRSTHLWKHVNRVHKGHPD--------VTCRICSKVSSSRGHLEK 143
C + +S L HV H G P+ C K ++ L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 144 HLIAH 148
H+ H
Sbjct: 81 HIRVH 85
Score = 30.3 bits (68), Expect = 0.39
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 449 HKAVAGLACGVCLKISETYEALALHLDQAHPGYFAEEVDN---PTCEVCGRYHNARPKLE 505
+A C + T L H+ H G + C G+ A+ KL
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 506 SHLAVHVG 513
+H+ VH G
Sbjct: 80 NHIRVHTG 87
Score = 26.5 bits (58), Expect = 9.2
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 119 VHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFK 178
+ + + C + S+ L H+ V P+ N C K FK
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVT-----MEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 179 QNWLLQKHKKT 189
+ L H +
Sbjct: 74 AKYKLVNHIRV 84
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 34.1 bits (79), Expect = 0.067
Identities = 48/237 (20%), Positives = 72/237 (30%), Gaps = 67/237 (28%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTC--RICSKVSSSRGHLEKHLIAHDNPN 152
Y+C C Y+++ L H H G C C K +S HL +H + H
Sbjct: 13 YICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT--- 68
Query: 153 TEVDEPQMNEFGESVHIC--HLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFR 210
GE C C +F ++KH K ++
Sbjct: 69 -----------GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC-----------VYV 106
Query: 211 C--KKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLHHMKTEHKDNEEYKC 268
C + C K F KH+ L H + H Y+C
Sbjct: 107 CHFENCGKAFK---------KHNQ-------------------LKVHQFS-HTQQLPYEC 137
Query: 269 LIPGCKKYFRTKLDCQKHCREHKTVTSRCPTNYCNFCADLFTNRKKLWLHLKSTHKD 325
GC K F ++H + H + C+F +T K H+ H+D
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLK---HVAECHQD 190
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.0 bits (74), Expect = 0.082
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDN 150
+VC LC +S S L +H+ C +C K +S H+ N
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 32.2 bits (72), Expect = 0.17
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 358 KPYACRICARLLGNGVKVSEHIKLHGEHLVNCRVCGSIFHSEPELKVHLEEH 409
+ C +C + V + +HI+ EH C VC F S H+ +
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 31.8 bits (71), Expect = 0.23
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 27 LKHVEEEHPTMQRRYSCQVHIILVLNTLLDDNLSLLKHVEEEHPTMQRRYSCQV-----D 81
LK + P +R V ++ LLD++ L + + + ++ C +
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI---SQFVCPLCLMPFS 85
Query: 82 TMEAIKEHRKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ ++K+H + VC +C K ++ + HV + H
Sbjct: 86 SSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 27.2 bits (59), Expect = 7.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 207 GIFRCKKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKVELLHHMKTEH 260
F C C+ F + K+H++++ C VC + + L H+ +H
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKE--FTSTDSALDHVCKKH 124
Score = 26.8 bits (58), Expect = 9.0
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 389 CRVCGSIFHSEPELKVHLEEHTDVPETKEQKPRPELPVTCDLCSKEWPSRKFMWQHLIRS 448
C +C F S LK H+ C +C KE+ S H+ +
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEH-------------TKVCPVCKKEFTSTDSALDHVCKK 123
Query: 449 H 449
H
Sbjct: 124 H 124
Score = 26.8 bits (58), Expect = 9.4
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 102 CPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMN 161
P+ S++L++ + C +C SS L++H+ ++
Sbjct: 53 NPQLLDESSYLYRLLASKAISQF--VCPLCLMPFSSSVSLKQHIRYTEHTKV-------- 102
Query: 162 EFGESVHICHLCQKQFKQNWLLQKH 186
C +C+K+F H
Sbjct: 103 --------CPVCKKEFTSTDSALDH 119
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 31.8 bits (73), Expect = 0.090
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 97 YVCD--LCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKH 144
Y C C K +S + L +H +VH G+P CS V + KH
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 30.3 bits (69), Expect = 0.28
Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 19/97 (19%)
Query: 96 MYVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTC--RICSKVSSSRGHLEKHLIAHDNP 151
MYVC C K + + L H H C C K S L++H H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-- 57
Query: 152 NTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKK 188
G C K L KH
Sbjct: 58 ------------GYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 28.7 bits (65), Expect = 1.0
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 29/104 (27%)
Query: 131 CSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICH--LCQKQFKQNWLLQKHKK 188
C K L+ H +H + + C C K+F L++H+K
Sbjct: 9 CGKAFKKHNQLKVHQFSHT--------------QQLPYECPHEGCDKRFSLPSRLKRHEK 54
Query: 189 TCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSH 232
G + C V +Y KH+ H
Sbjct: 55 VHAGYPC-------------KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 26.8 bits (60), Expect = 4.8
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 87 KEHRK--TEHAMYVCDLCPKYYSRSTHLWKHVNRVH 120
K H K + D C T KHV H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.2 bits (72), Expect = 0.10
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 93 EHAMYVCDLCPKYYSRSTH-LWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIA-HDN 150
E VC C ++ L KH+ K + C+ C K S+ L H +A H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 151 PNTEVDEPQMNEFGES 166
++ + + E G S
Sbjct: 81 KPSDAEASEGGESGPS 96
Score = 30.7 bits (68), Expect = 0.30
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 230 HSHTKAYCEVCITAPGYETKVELLHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCRE 289
H +A C C +T V L HM+ K + KC C+K F++K H
Sbjct: 20 HERGEAVCPTCNVV-TRKTLVGLKKHMEVCQKLQDALKC--QHCRKQFKSKAGLNYHTMA 76
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 30.9 bits (71), Expect = 0.16
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKH 144
Y CD C K +S S+ L KH R H G C C K R HL H
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 26.6 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y CD C K + + +HL H +RVH G
Sbjct: 47 YKCDECGKAFIQRSHLIGH-HRVHTG 71
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 31.6 bits (73), Expect = 0.17
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 31/122 (25%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVD 156
Y C C K ++ + +H +H G C +C K + HL H+ H
Sbjct: 11 YPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT------- 61
Query: 157 EPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVK 216
G + C++C K+F +H +C + K +
Sbjct: 62 -------GIKPYECNICAKRFMWRDSFHRHVTSCTKS---------------YEAAKAEQ 99
Query: 217 VF 218
Sbjct: 100 NT 101
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 30.2 bits (69), Expect = 0.35
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDV----TCRICSKVSSSRGHLEKH 144
Y C C K + + L H + + V C C K + R + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.0 bits (66), Expect = 0.74
Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 24/108 (22%)
Query: 111 HLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHIC 170
R H G C C K + L+ H + +PN F + +C
Sbjct: 2 SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN----------FVPAAFVC 50
Query: 171 HLCQKQFKQNWLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVF 218
C K F + + +H C GP +
Sbjct: 51 SKCGKTFTRRNTMARHADNCAGPD-G------------VEGENSGPSS 85
Score = 26.3 bits (59), Expect = 6.8
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSK 133
+VC C K ++R + +H G V
Sbjct: 48 FVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGP 83
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.8 bits (65), Expect = 0.35
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNR 118
+ C C + +SRS HL H R
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
Score = 25.4 bits (56), Expect = 5.8
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 118 RVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
R G C C + S HL H H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.66
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 427 TCDLCSKEWPSRKFMWQHLIRSHKAVA---GLACGVCLKISETYEALALHLDQAHPG 480
C C+ + P H+ H V C C +++ Y+AL+ H + HPG
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 28.2 bits (62), Expect = 2.2
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 64 HVEEEHPTMQRRYSC-----QVDTMEAIKEHRKTEH------AMYVCDLCPKYYSRSTHL 112
H +++ ++ Y C Q + H +EH + YVC C R L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 113 WKHVNRVHKGHPDVTCRI 130
+H + H G + +
Sbjct: 67 SEHNLKYHPGEENFKLTM 84
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 28.7 bits (63), Expect = 0.81
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 GHKEEAALSCGNCLKVFRDNLSLLKHVEEEH 34
G +E L CG C KVF D L +H E +H
Sbjct: 7 GLREAGILPCGLCGKVFTDANRLRQH-EAQH 36
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 28.7 bits (65), Expect = 0.84
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 97 YVCDL--CPKYYSRSTHLWKHVNRVHKGHPDVTC--RICSKVSSSRGHLEKHLIAH 148
CD C + +S +L H H +C C K + + HL++H+ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 28.3 bits (64), Expect = 1.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 252 LLHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREH 290
L HH K +H + + C P C K F K ++H + H
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y CD+C K +S+S+HL H RVH G
Sbjct: 13 YKCDVCGKEFSQSSHLQTH-QRVHTG 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 27.6 bits (61), Expect = 1.4
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 90 RKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICS 132
C++C K + HL +H H G + S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPSS 47
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 168 HICHLCQKQFKQNWLLQKHKKTCKGPK 194
C +C K F+ + L +HK + G K
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEK 39
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 30.3 bits (68), Expect = 1.5
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 96 MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
+Y+ D +Y+ ++ + HP
Sbjct: 36 IYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 1.6
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 184 QKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSH 232
+ P + + C C F +HL+ H
Sbjct: 93 ATKPAAVVSDPQSMKVTPIVNPSS-YVCNVCNARFSTMSALSEHLRSDH 140
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 30.2 bits (67), Expect = 2.0
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 194 KRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTKAYCEVCITAPGYETKV-EL 252
+ E C C + F +++ HL K E K+
Sbjct: 278 EHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRY 337
Query: 253 LHHMKTEHKDNEEY 266
L ++ E +
Sbjct: 338 LKYLNDEFSRTRSF 351
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.7 bits (60), Expect = 2.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C+ C + + HL HV +H G
Sbjct: 12 YKCETCGARFVQVAHLRAHV-LIHTG 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
YVCD C K + S L +H R+H G
Sbjct: 13 YVCDYCGKAFGLSAELVRH-QRIHTG 37
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.7 bits (59), Expect = 2.3
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
+ C C + +++ +L +H R H
Sbjct: 13 FKCSKCDRVFTQRNYLVQH-ERTHARKS 39
Score = 25.6 bits (56), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKGPKRPTS 198
GE+ C C + F Q L +H++T P+S
Sbjct: 9 GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 2.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNR 118
+ C CPK + RS HL H+
Sbjct: 3 FACPECPKRFMRSDHLTLHILL 24
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.5 bits (59), Expect = 2.6
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C + +S + L +H ++H
Sbjct: 11 YSCAECKETFSDNNRLVQH-QKMHTV 35
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.5 bits (63), Expect = 2.6
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 140 HLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKGPKR 195
+ +PN E D + G +H C C + F + L+ H ++ KR
Sbjct: 26 RPQGSARPQPDPNAEFDP---DLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKR 78
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 2.6
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C+ C K + R +HL +H + H
Sbjct: 13 YGCNECGKNFGRHSHLIEH-LKRHFR 37
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.0 bits (57), Expect = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNR 118
+ C CPK + RS HL KH+
Sbjct: 3 FACPECPKRFMRSDHLSKHITL 24
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.9 bits (56), Expect = 3.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVH 120
YVC LC K + S L H+ VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.4 bits (58), Expect = 3.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 261 KDNEEYKCLIPGCKKYFRTKLDCQKHCREH 290
++ ++CL PGC K F+ + + + H + H
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C++C K + S HL +H RVH
Sbjct: 13 YSCNVCGKAFVLSAHLNQH-LRVHTQ 37
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 3.7
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C+ C K + R +HL H R+H
Sbjct: 13 FKCNECGKGFGRRSHLAGH-LRLHSR 37
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 4.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C+ C K +++++HL H RVH G
Sbjct: 13 FQCEECGKRFTQNSHLHSH-QRVHTG 37
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 26.0 bits (58), Expect = 4.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K + ++T L +H H G
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTG 38
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 25.5 bits (57), Expect = 4.7
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C++C + L H+ R+H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHL-RIHTG 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K + R THL +H R+H G
Sbjct: 13 YKCSECGKAFHRHTHLNEH-RRIHTG 37
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C +C K + S+HL +H + VH G
Sbjct: 13 YKCQVCGKAFRVSSHLVQH-HSVHSG 37
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.4 bits (55), Expect = 4.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 97 YVCDLCPKYYSRSTHLWKHV 116
+ C CPK + RS L KH+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 4.9
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C C +S S L+KH+ R H+
Sbjct: 13 FQCKECGMNFSWSCSLFKHL-RSHER 37
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 5.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C+ C K + +S HL +H R+H G
Sbjct: 13 HKCNECGKSFIQSAHLIQH-QRIHTG 37
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 5.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y+C+ C K + + +HL +H R+H G
Sbjct: 13 YICNECGKSFIQKSHLNRH-RRIHTG 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K +SR+ L KH R+H G
Sbjct: 13 YNCKECGKSFSRAPCLLKH-ERLHSG 37
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 25.5 bits (57), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K +S++THL +H RVH G
Sbjct: 13 YECKECGKAFSQTTHLIQH-QRVHTG 37
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.4 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
Y C PGC K F D +H + H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSH 28
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 5.9
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C C + ++ +HL +H R+H G
Sbjct: 13 HQCHECGRGFTLKSHLNQH-QRIHTG 37
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 6.0
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 181 WLLQKHKKTCKGPKRPTSPLPEPDEDGIFRCKKCVKVFVNPDIYKKHLKHSHTK 234
W + + K + T + + +K +V NP+ + + S +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 6.8
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K Y R L H RVH G
Sbjct: 13 YKCVECGKGYKRRLDLDFH-QRVHTG 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 7.5
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C +C K +++ HL +H + H G
Sbjct: 13 YECKVCSKAFTQKAHLAQH-QKTHTG 37
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C+ C K Y+R +L H RVH G
Sbjct: 13 YKCEDCGKGYNRRLNLDMH-QRVHMG 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 8.3
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ CD+C K + + L +H + VH
Sbjct: 13 FKCDICGKSFCGRSRLNRH-SMVHTA 37
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 8.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C C K + R++HL +H +H G
Sbjct: 13 YKCHECGKVFRRNSHLARH-QLIHTG 37
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 8.6
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C+ C K +++++HL +H RVH G
Sbjct: 13 YKCNECGKVFTQNSHLARH-RRVHTG 37
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 27.7 bits (61), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 96 MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
+Y+C+ C KY T L +H+ + HP
Sbjct: 41 LYLCEFCLKYMKSRTILQQHMKKCGWFHP 69
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 26.9 bits (59), Expect = 9.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 302 CNFCADLFTNRKKLWLHLKSTHK 324
C FC LF + ++ + H K H+
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQ 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 9.5
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y C+ C K +++++HL H R+H G
Sbjct: 13 YKCNECGKVFTQNSHLANH-QRIHTG 37
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C C K Y++ HL +H RVH G
Sbjct: 13 FKCGECGKSYNQRVHLTQH-QRVHTG 37
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKGPK 194
GE+ ++C C K F Q L H+++C
Sbjct: 8 GETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 9.9
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C+ C K +++++ L H RVH G
Sbjct: 13 FKCEECGKRFTQNSQLHSH-QRVHTG 37
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 9.9
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 357 KKPYACRICARLLGNGVK-VSEHIKLHGEHLVNCRVCGSIFHSEPELKVH-LEEHTDVPE 414
K +C C + ++ + +H++ + + C CG S +K H + H +P
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 415 TKE 417
Sbjct: 92 GPS 94
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 10.0
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
+ C C K + ++ HL H R+H G
Sbjct: 13 FKCKECGKAFRQNIHLASH-LRIHTG 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 24.8 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 YVCDLCPKYYSRSTHLWKHVNRVHKG 122
Y CD C K +S+ L H RVH G
Sbjct: 12 YRCDQCGKAFSQKGSLIVH-IRVHTG 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.441
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,277,640
Number of extensions: 492993
Number of successful extensions: 2534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2250
Number of HSP's successfully gapped: 420
Length of query: 537
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 439
Effective length of database: 3,965,535
Effective search space: 1740869865
Effective search space used: 1740869865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)