RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12165
         (537 letters)



>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 53

 Score = 30.0 bits (67), Expect = 0.060
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
           Y C  C K ++  +   +H+  +H G     C +C K    + HL  H+  H
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53



 Score = 24.3 bits (52), Expect = 7.1
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 14/59 (23%)

Query: 131 CSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKT 189
           C K  + +   ++H                   G   + C +C K+FK    L  H K 
Sbjct: 8   CGKSFTHKSQRDRH--------------MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 29.2 bits (66), Expect = 0.10
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           Y+C  C K +SR  HL  H+ +VH  
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTS 31



 Score = 23.8 bits (52), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 209 FRCKKCVKVFVNPDIYKKHLKHSHT--KAY-CEV 239
           + C+ C K F  PD    H+K  HT  + + C+V
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39


>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 273

 Score = 32.5 bits (74), Expect = 0.10
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 96  MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
           +Y+ D   +Y+       ++  +    HP
Sbjct: 34  IYIDDFTLQYFGSKKQYERYRKKCTLRHP 62


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 28.8 bits (65), Expect = 0.11
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVH 120
           Y C +C   +++S  +  H+ + H
Sbjct: 9   YECYICHARFTQSGTMKMHILQKH 32



 Score = 24.2 bits (53), Expect = 5.1
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 118 RVHKGHPDVTCRICSKVSSSRGHLEKHLIAH 148
           R H G     C IC    +  G ++ H++  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQK 31


>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 53

 Score = 28.4 bits (63), Expect = 0.23
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 6  KEEAALSCGNCLKVFRDNLSLLKHVEEEHPT 36
          +E   L CG C KVF D   L +H E +H  
Sbjct: 2  REAGILPCGLCGKVFTDANRLRQH-EAQHGV 31


>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 270

 Score = 30.6 bits (69), Expect = 0.38
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 96  MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
           +Y+C+ C KY    T L +H+ +    HP
Sbjct: 31  LYLCEFCLKYMKSRTILQQHMKKCGWFHP 59


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 27.3 bits (61), Expect = 0.43
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 118 RVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPN 152
           R H G     C  C K    +  L+ H   + +PN
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35



 Score = 24.6 bits (54), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKGPK 194
           GE  + C  C K F+Q  LL  H K    P 
Sbjct: 5   GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35



 Score = 24.2 bits (53), Expect = 5.2
 Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           Y C  C K + +   L  H  + +  
Sbjct: 9   YACSHCDKTFRQKQLLDMHF-KRYHD 33


>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 27.7 bits (62), Expect = 0.63
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 202 EPDED----GIFRCKKCVKVFVNPDIYKKHLK 229
           E D D    G+ RC  C + F++    K H +
Sbjct: 5   EFDPDLPGGGLHRCLACARYFIDSTNLKTHFR 36



 Score = 27.0 bits (60), Expect = 1.0
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 151 PNTEVDEPQMNEFGESVHICHLCQKQFKQNWLLQKHKKTCKGPKR 195
           PN E D    +  G  +H C  C + F  +  L+ H ++    KR
Sbjct: 2   PNAEFDP---DLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKR 43


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
           Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 26.0 bits (58), Expect = 0.85
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           +VC++C + ++R  HL +H  R H  
Sbjct: 3   FVCEVCTRAFARQEHLKRHY-RSHTN 27


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 28

 Score = 26.0 bits (58), Expect = 1.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           + C +C + +SRS HL  H+ R H G
Sbjct: 4   FQCRICMRNFSRSDHLTTHI-RTHTG 28


>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
           MYST1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 29.0 bits (65), Expect = 1.2
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 96  MYVCDLCPKYYSRSTHLWKHVNRVHKGHP 124
           +++C+ C KY         H+ +     P
Sbjct: 31  LWLCEYCLKYMKYEKSYRFHLGQCQWRQP 59



 Score = 26.3 bits (58), Expect = 8.0
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 198 SPLPEP--DEDGIFRCKKCVKVFVNPDIYKKHLKH 230
           SP PE    +  ++ C+ C+K       Y+ HL  
Sbjct: 19  SPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQ 53


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 31

 Score = 25.7 bits (57), Expect = 1.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           + C    C K F    + Q+H R H
Sbjct: 3   FMCTWSYCGKRFTRSDELQRHKRTH 27


>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 121

 Score = 27.9 bits (62), Expect = 1.4
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 423 ELPVTCDLCSKEWPSRKFMWQHLIRSHK 450
                C  C + + S +  + H    H+
Sbjct: 13  RQHTPCLFCDRLFASAEETFSHCKLEHQ 40



 Score = 27.1 bits (60), Expect = 2.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 302 CNFCADLFTNRKKLWLHLKSTHK 324
           C FC  LF + ++ + H K  H+
Sbjct: 18  CLFCDRLFASAEETFSHCKLEHQ 40


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 33

 Score = 25.7 bits (57), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           Y C  C K +SRS+ L +H  RVH G
Sbjct: 8   YGCVECGKAFSRSSILVQHQ-RVHTG 32



 Score = 24.9 bits (55), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 164 GESVHICHLCQKQFKQNWLLQKHKKTCKG 192
           GE  + C  C K F ++ +L +H++   G
Sbjct: 4   GEKPYGCVECGKAFSRSSILVQHQRVHTG 32


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 29

 Score = 25.4 bits (56), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVHKG 122
           + C  CPK + RS HL KH+ + H+ 
Sbjct: 3   FACPECPKRFMRSDHLSKHI-KTHQN 27


>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 198 SPLPEPDEDGIFRCKKCVKVFVNP 221
            P P  ++  I RC++C + ++NP
Sbjct: 3   DPPPLNEDGLIVRCRRC-RSYMNP 25


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.5 bits (56), Expect = 2.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           + C  P C K F  K   ++H + H
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLH 26


>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 32

 Score = 25.0 bits (55), Expect = 2.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           Y C  PGC K F    D  +H + H
Sbjct: 4   YSCDHPGCDKAFVRNHDLIRHKKSH 28


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 30

 Score = 25.0 bits (55), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           +KC   GC+K +    + + H R H
Sbjct: 3   HKCTFEGCRKSYSRLENLKTHLRSH 27



 Score = 23.4 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 97  YVCD--LCPKYYSRSTHLWKHVNRVHKG 122
           + C    C K YSR  +L  H+ R H G
Sbjct: 3   HKCTFEGCRKSYSRLENLKTHL-RSHTG 29


>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein 1,
           ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 26.0 bits (57), Expect = 2.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 457 CGVCLKISETYEALALHLDQAHPG 480
           C  C  +++ Y+AL+ H  + HPG
Sbjct: 9   CVECNFLTKRYDALSEHNLKYHPG 32


>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
           coli [TaxId: 562]}
          Length = 235

 Score = 27.8 bits (61), Expect = 3.1
 Identities = 11/71 (15%), Positives = 17/71 (23%)

Query: 113 WKHVNRVHKGHPDVTCRICSKVSSSRGHLEKHLIAHDNPNTEVDEPQMNEFGESVHICHL 172
             +V  +H     V C    +V    G +      H         P +  FGE       
Sbjct: 101 NTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDE 160

Query: 173 CQKQFKQNWLL 183
                    + 
Sbjct: 161 IYMALSMADIF 171


>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 30

 Score = 24.7 bits (53), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 384 EHLVNCRVCGSIFHSEPELKVHLEEHT 410
           E +  C VC   F    EL++H+  HT
Sbjct: 2   EQVFTCSVCQETFRRRMELRLHMVSHT 28


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 29

 Score = 24.6 bits (54), Expect = 3.2
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           Y C +  C + F    D  +H R H
Sbjct: 3   YACPVESCDRRFSRSADLTRHIRIH 27



 Score = 23.8 bits (52), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 97  YVCD--LCPKYYSRSTHLWKHVNRVHKG 122
           Y C    C + +SRS  L +H+ R+H G
Sbjct: 3   YACPVESCDRRFSRSADLTRHI-RIHTG 29


>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 24.2 bits (53), Expect = 4.3
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           Y C   GC K F    + + H   H
Sbjct: 3   YVCPFDGCNKKFAQSTNLKSHILTH 27


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 35

 Score = 24.3 bits (53), Expect = 4.7
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 164 GESVHICHLCQKQFKQNWLLQKHKKT 189
           G+   +C +C   F       +H K 
Sbjct: 4   GKRPFVCRICLSAFTTKANCARHLKV 29


>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 24.3 bits (53), Expect = 5.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 266 YKCLIPGCKKYFRTKLDCQKHCREH 290
           ++C   GC K F    + + H R H
Sbjct: 3   FQCTFEGCGKRFSLDFNLRTHVRIH 27


>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 31

 Score = 24.1 bits (52), Expect = 5.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 266 YKCLIPGCKKYFRTKLDCQKH 286
           Y C   GC K F    D  KH
Sbjct: 3   YMCEHEGCSKAFSNASDRAKH 23


>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 368 LLGNGVKVSEHIKLHGEHLVNCRVCGSIFHSEPELKVHLEEHTD 411
           +LGNG ++             C+ C S   S  EL  HL  H +
Sbjct: 7   ILGNGPRL-------QNSTYQCKHCDSKLQSTAELTSHLNIHNE 43


>d1kpta_ d.70.1.1 (A:) Virally encoded KP4 toxin {Ustilago maydis,
           P4 strain [TaxId: 5270]}
          Length = 105

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 21/82 (25%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 327 TNCMCSA-CFVVEDNLSALEAHVAA---KHKAIIKKPYAC------RICARLL-GNGVKV 375
            NC  S+ C +   NL       A           +  A        I A +   N    
Sbjct: 3   INCRGSSQCGLSGGNLMVRIRDQACGNQGQTWCPGERRAKVCGTGNSISAYVQSTNNCIS 62

Query: 376 SEHIKLHGEHLVN--CRVCGSI 395
                 H  +LVN  CRVCGS 
Sbjct: 63  GTEACRHLTNLVNHGCRVCGSD 84


>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
           synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
           29292]}
          Length = 107

 Score = 25.3 bits (55), Expect = 8.0
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 67  EEHPTMQRRYSCQVDTMEAIKEHRKTEHAMYVCDLCPKYYSRSTHLWKHVNRVHKGHPDV 126
           ++HP   + Y  +VD  + ++          +     KYY     L ++V  V    P  
Sbjct: 22  KDHPNADKLYVVKVDLGDEVRT---------LVAGLKKYYKPEELLNRYVVVVANLEPKK 72

Query: 127 TCRICS 132
              I S
Sbjct: 73  LRGIGS 78


>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional
           protein HisB, phosphatase domain {Escherichia coli
           [TaxId: 562]}
          Length = 161

 Score = 26.0 bits (56), Expect = 8.0
 Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 5/103 (4%)

Query: 253 LHHMKTEHKDNEEYKCLIPGCKKYFRTKLDCQKHCREHKTVTSRCPTNYCNFCADLFTNR 312
              M T                      +               CP    + C       
Sbjct: 48  KLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKV 107

Query: 313 KKLWLHLKSTHKDLTNCMCSACFVVEDNLSALEAHVAAKHKAI 355
           K +  +L     D  N      +V+ D  + ++         +
Sbjct: 108 KLVERYLAEQAMDRANS-----YVIGDRATDIQLAENMGINGL 145


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 26

 Score = 23.3 bits (51), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 97  YVCDLCPKYYSRSTHLWKHVNRVH 120
           Y C  C K +S+++ L  H  R+H
Sbjct: 3   YKCLECGKAFSQNSGLINH-QRIH 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,111,423
Number of extensions: 104610
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 130
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)