BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12166
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF 87
KP++C CGK+++ + HL H ++ H G C CG++FS +L H+R+ G +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 21 LFRFDRT----KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAE 76
L R RT KP+ C CGK+++ +L H ++ H G C CG++FS +A+L
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRA 123
Query: 77 HKRSRHGITGF 87
H+R+ G +
Sbjct: 124 HQRTHTGEKPY 134
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF 87
KP++C CGK+++ HL H ++ H G C CG++FS NL H+R+ G +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
KP+ C CGK+++ +L H ++ H G C CG++FS L H+R+ G
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 55 GHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF 87
G C CG++FS +LAEH+R+ G +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPY 50
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF 87
KP+ C CGK+++ + +L H ++ H G C CG++FS ++L +H+R+ G +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
KP+ C CGK+++ + L H ++ H G C CG++FS +L+ H+R+
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ CD C ++ +L H K+ H G CN+CG F+ ANL H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP C +C + ++ + HL H+++ H G C++CGR F+ H+ +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSC--DLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSC--DLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 80
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 86 GFV 88
F
Sbjct: 61 PFA 63
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + +L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
KP C +C + ++ + HL H+++ H G C++CGR F+ H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ + L H++ H G C +C R FS +L H R+ G
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP C +C + ++ L H+++ H G C++CGR F+++ H R+RH
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICGRKFATL-----HTRTRH 81
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ +L H++ H G C +C R FS A+L H R+ G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 1 MDCGWKKTAYEIGLGIPAEPLFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVT 60
DC +++ + L D T+P+ C CGK + + H H G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD-TRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK 59
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
C VCG+ FS +NL H R G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
+P+ C +CGK + + HL GH+K H G CN+C + F
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRF 75
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 35 CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF 87
CGK++T H+ S H G C VCG+ F +L H + GI +
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 31 SCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITG 86
+C++CGK + HL H K +H G +C VCG F ++ H RS G G
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+ C CGK ++ HL GH+K H G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS--AHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP+SC +CG + + HV+S G P + C CG+ FS +L H + H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI-CQSCGKGFSRPDHLNGHIKQVH 89
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 55 GHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
G V C +CG+ F + +L HK S G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSG 32
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSR 81
RT H+CD CGKTYT + HL H+++ H G C+ CG F+ L H R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 82 HGITGF 87
G F
Sbjct: 61 TGHRPF 66
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSR 81
RT H+CD CGKTYT + HL H+++ H G C+ CG F+ L H R
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 82 HGITGF 87
G F
Sbjct: 62 TGHRPF 67
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
+P C+ CGKTY A L H + AH G+ +C CG+ F + + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
CN CG+T+ + L+ H+R+ G
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLG 29
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP C +C + ++ L H+++ H G C++CGR F+++ H R RH
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICGRKFATL-----HTRDRH 81
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
+P++C + C + ++ +L H++ H G C +C R FS L +H R+ G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 86 GFV 88
F
Sbjct: 62 PFA 64
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHK 78
+P++CD+C K + HL H + H C CG+ F LA HK
Sbjct: 44 RPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHK 78
C CG+ +T + +L H ++ H TC++C + F +L +H+
Sbjct: 20 CKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHR 65
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ C CGK ++ + L H + H G C CG+ FS + L H+R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 58 SVTCNVCGRTFSSIANLAEHKRSRH 82
S CNVC FS+++ L+EH RS H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDH 140
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 58 SVTCNVCGRTFSSIANLAEHKRSRH 82
S CNVC FS+++ L+EH RS H
Sbjct: 98 SYVCNVCNARFSTMSALSEHLRSDH 122
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+ + CD CGK+++ + L H ++ H G C+ CG+ F ++L H R
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
C+ CG++FS ++L++H+R+ G
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTG 43
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+SC++CGK + L+ HL H++
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLR 33
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 60 TCNVCGRTFSSIANLAEHKR 79
+CNVCG+ F A+L +H R
Sbjct: 14 SCNVCGKAFVLSAHLNQHLR 33
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGH---PSVTCNVCGRTFSSIANLAEHKRSRHGI 84
KP++C C KT+ + L H K H + + C+ CG+TF+ +A H + G
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 85 TG 86
G
Sbjct: 74 DG 75
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 20 PLFRFDRTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLA 75
P R + H C CGKTY + HL H ++ H G +C+ C R F+ L+
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELS 66
Query: 76 EHKRS 80
H+R+
Sbjct: 67 RHRRT 71
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
+ +P++C + C + ++ + L H++ H G C +C R FS +L H R+
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
KP+ CD C + ++ + L H + H G C C R FS +L H R+ G
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 86 GF 87
F
Sbjct: 94 PF 95
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 35 CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSRHGITGF 87
C K Y HL H + H G C+ C R FS L H+R G+ F
Sbjct: 14 CNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLAEH 77
KP C C + ++ + HL H ++ H G +C C + F+ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV 63
KP+ C CGK ++ HL GH+K H C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 25 DRTKPHSCDLCGKTYTLAKHLWGHVKSAH 53
DR KP++CD+CGK Y L H +H
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSH 31
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 29 PHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
PH C++CGK ++ L H++ H G C C + ++L +H R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 24 FDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
F++ +P S D+ LA +L S + + CN C TF +A H S
Sbjct: 146 FNKNQPESDDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQMTFVGEREVARHAES 202
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 21 LFRFDRTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAE 76
+ R KPH C C K+Y+ ++L H++S H G C C + FS+ ++ A+
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 77 HKRSRH 82
H+ H
Sbjct: 118 HQNRTH 123
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 24 FDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
F++ +P S D+ LA +L S + + CN C TF +A H S
Sbjct: 146 FNKNQPESDDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQXTFVGEREVARHAES 202
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
K + C C K + LA++ H + H G C CG++F + ++ H +S H
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
+ + C CGK++ + + H+KS H PS
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQDPS 107
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHV--KSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
KP C CGK Y ++L H ++ TC+VC TF L H S G
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 86 GFVVSA 91
+ S+
Sbjct: 94 PYKCSS 99
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
C++C + + +HL H +S H C +C R F+ L H + H
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+ C LC + +T L H + H G
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
KP+ C+ CGK +T HL H + G PS
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++LA H+R
Sbjct: 15 CNECGKVFTQNSHLARHRR 33
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + LA H+R
Sbjct: 15 CNECGKAFSQTSKLARHQR 33
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + LA H+R
Sbjct: 15 CNECGKAFSQTSKLARHQR 33
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
CN CG+TFS + L+ H+R+ G
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTG 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
KP C +CGK +T A L HV+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQ 24
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 31 SCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSRHGITGF 87
C GK++ L H++ H G C CG+ F+ NL HKR+ G F
Sbjct: 64 ECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
+PH C+ CGK++ + HL H +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQR 33
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG++F A+L +H+R
Sbjct: 15 CNECGKSFIQSAHLIQHQR 33
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+SC+ CGK +T L H K H G
Sbjct: 9 KPYSCNECGKAFTFKSQLIVH-KGVHTG 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+ C +CGK + ++ HL H S H G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHSG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ C+ CGK +T HL H +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQR 33
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHGI 84
CN CG+ F+ ++LA H+R G+
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGV 38
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 30 HSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSRHGITGF 87
H C CGK + + L H + H G C CG+ FS NL H R G +
Sbjct: 35 HVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 88 V 88
V
Sbjct: 94 V 94
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 24 FDRTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTC--NVCGRTFSSIANLAEHKR 79
++ + H CD C K YT + HL H+++ H G C C F+ L H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 80 SRHGITGF 87
G F
Sbjct: 69 KHTGAKPF 76
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 30 HSCDLCGKTYTLAKHLWGHVKSAHQGHPSVT-CNVCGRTFSSIANLAEHKRSRHGI 84
+ C +C + YT + H ++H+ + V C C + F+ N+ H + H I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 12 IGLGIPAEPLFRFDRTKPHSCDLCG 36
+ G A PL+R DRT + C+ CG
Sbjct: 6 VNCGATATPLWRRDRTGHYLCNACG 30
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 56 HPSVTCNVCGRTFSSIANLAEHK 78
HP CN CG+TFS A+L++H+
Sbjct: 11 HP-FKCNECGKTFSHSAHLSKHQ 32
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 51 SAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S G + CN CG+TF + L++H+R
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQR 31
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ ANL +H+R
Sbjct: 15 CGECGKAFAQKANLTQHQR 33
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVK 50
TK H C CG+ +TL HL H +
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQR 33
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ CD CGK + L+ L H +
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQR 33
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
C VC + F+ A+LA+H+++ G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
KP+ C +C K +T HL H K+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKT 34
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNH 31
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 12 IGLGIPAEPLFRFDRTKPHSCDLCG 36
+ G A PL+R DRT + C+ CG
Sbjct: 8 VNCGATATPLWRRDRTGHYLCNACG 32
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of
Murine Gata-1, Nmr, 25 Structures
Length = 46
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 12 IGLGIPAEPLFRFDRTKPHSCDLCG 36
+ G A PL+R DRT + C+ CG
Sbjct: 8 VNCGATATPLWRRDRTGHYLCNACG 32
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHGITG 86
CN C + F++ +NL H+R+ G +G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESG 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLARH 31
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP C+ CGK +T HL H +
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQR 33
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH 31
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 12 IGLGIPAEPLFRFDRTKPHSCDLCG 36
+ G A PL+R DRT + C+ CG
Sbjct: 6 VNCGATATPLWRRDRTGHYLCNACG 30
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLARH 31
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
+P C+ CGK + HL GH++
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLR 33
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+VCG+ FS ++L H+R
Sbjct: 15 CDVCGKEFSQSSHLQTHQR 33
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
K + CD+CGK ++ + HL H +
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQR 33
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 51 SAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S G CN CG+ FSS + L H+R
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQR 31
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
KP+ C C KT++L L H +S
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRS 34
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KPH C CGK+++ L H +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQR 33
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
KP+ C CGK +T+ +L H K + PS
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ CD CGK ++ L H++
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIR 32
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 51 SAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S G C CG++FS +LA H+R
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHER 31
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + L++H++
Sbjct: 15 CNECGKVFSRNSQLSQHQK 33
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHV 49
KP+ C+ CG + HL HV
Sbjct: 10 KPYKCETCGARFVQVAHLRAHV 31
>pdb|3FJ1|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
(Yp_167080.1) From Silicibacter Pomeroyi Dss-3 At 1.75 A
Resolution
pdb|3FJ1|B Chain B, Crystal Structure Of Putative Phosphosugar Isomerase
(Yp_167080.1) From Silicibacter Pomeroyi Dss-3 At 1.75 A
Resolution
pdb|3FJ1|C Chain C, Crystal Structure Of Putative Phosphosugar Isomerase
(Yp_167080.1) From Silicibacter Pomeroyi Dss-3 At 1.75 A
Resolution
pdb|3FJ1|D Chain D, Crystal Structure Of Putative Phosphosugar Isomerase
(Yp_167080.1) From Silicibacter Pomeroyi Dss-3 At 1.75 A
Resolution
Length = 344
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 14 LGIPAEPLFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIAN 73
L + E +F T C L ++Y+ A+ L G V +G P + + +A
Sbjct: 217 LAVSNEAALKFKET----CQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAPLAE 272
Query: 74 LAEHKRSRHGITGFVVSARI 93
+A+ ++ G T F + R+
Sbjct: 273 IADQIAAK-GATVFATTGRV 291
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
+P+SC +CGK ++L + H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C VCG+ F+ +NL +H++
Sbjct: 15 CTVCGKAFTDRSNLIKHQK 33
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 59 VTCNVCGRTFSSIANLAEHKRSRHG 83
V C +CG+ F + +L HK S G
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSG 37
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 59 VTCNVCGRTFSSIANLAEHKRSRHGIT 85
+ C +CG+ F+ L +H+ ++HG+T
Sbjct: 14 LPCGLCGKVFTDANRLRQHE-AQHGVT 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVK 50
+P+ C+ CGK + HL H+K
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLK 33
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ C+ CGK + + L H++
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,887,769
Number of Sequences: 62578
Number of extensions: 98706
Number of successful extensions: 639
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 267
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)