RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12166
(94 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.7 bits (119), Expect = 7e-10
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK--SAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
C++CG T L H + + C CG+ F ++A H+ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 33.9 bits (78), Expect = 0.001
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
C+ CGK + + H +H G +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 47.5 bits (114), Expect = 3e-09
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSA-HQGHPSVTCNVCGRTFSSIANLAEHKRSRHGI 84
+ C +C + YT + H ++ + C C + F+ N+ H + H I
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 31.8 bits (73), Expect = 0.005
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+G + C VC R ++ I+N H + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 44.0 bits (105), Expect = 1e-07
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ CD C ++ +L H K+ H G CN+CG F+ ANL H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 44.4 bits (106), Expect = 1e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+C++CGK + HL H K +H G +C VCG F ++ H R
Sbjct: 6 SGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 40.6 bits (96), Expect = 4e-06
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS--VTCNVCGRTFSSIANLAEHKRSRHGIT 85
KP+SC +CG + + HV+S H G C CG+ FS +L H + H +
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH--S 90
Query: 86 G 86
G
Sbjct: 91 G 91
Score = 30.9 bits (71), Expect = 0.016
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 52 AHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G V C +CG+ F + +L HK
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKL 28
Score = 30.2 bits (69), Expect = 0.034
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+ C CGK ++ HL GH+K H G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.3 bits (103), Expect = 1e-07
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSS 70
KP+ C CGK ++ HL GH+K H C V SS
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 29.1 bits (66), Expect = 0.048
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
G S+ C CG+ FS +L H + H
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 43.6 bits (104), Expect = 4e-07
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH--VKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP C CGK Y ++L H ++ TC+VC TF L H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Score = 41.3 bits (98), Expect = 3e-06
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITG 86
C C K + +L H + H G C CG+ + NL EH+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Score = 40.2 bits (95), Expect = 7e-06
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGITG 86
+ +C +C +T+ L H+ S H G C+ C + F +L H H +G
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH--SG 120
Score = 29.8 bits (68), Expect = 0.054
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 52 AHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G V C C + F S L H R
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNR 28
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 42.4 bits (101), Expect = 6e-07
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
PH C++CGK ++ L H H G C C + ++L +H R
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 40.1 bits (95), Expect = 6e-06
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ C C + L H H C +C + + L H R
Sbjct: 35 KPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHLR 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 42.4 bits (101), Expect = 8e-07
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
K C CG+ +T + +L H + H TC++C + F +L +H+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Score = 42.4 bits (101), Expect = 8e-07
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+P++CD+C K + HL H + H C CG+ F LA HK
Sbjct: 44 RPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 42.1 bits (100), Expect = 8e-07
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSV----TCNVCGRTFSSIANLAEHKR 79
KP++C C KT+ + L H K + V C+ CG+TF+ +A H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
C CGKT+T + H + G V G +
Sbjct: 46 AAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPSS 85
Score = 29.4 bits (67), Expect = 0.052
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 60 TCNVCGRTFSSIANLAEHKRSRHG 83
C+ C +TF L H + H
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHD 40
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 41.3 bits (98), Expect = 9e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+ C++C + + +HL H +S H C +C R F+ L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 41.7 bits (99), Expect = 9e-07
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG--HPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP+ C +C +T + + H+ C C + ++L H R +H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 30.2 bits (69), Expect = 0.024
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 26 RTKPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
C C L H++ H
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 41.7 bits (99), Expect = 1e-06
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP C +C + ++ + HL H+++ H G C++CGR F+ H +
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
Score = 39.8 bits (94), Expect = 7e-06
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+P++C + C + ++ + L H++ H G C +C R FS +L H R
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 41.6 bits (99), Expect = 1e-06
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+P+ C CGK + + H H G C VCG+ FS +NL H R
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 36.6 bits (86), Expect = 8e-05
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
C +CGK++ + L H H C CG+ F +++ +H
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 40.9 bits (97), Expect = 2e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ C CGK ++ + L H + H G C CG+ FS + L H+R
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 42.4 bits (101), Expect = 3e-06
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP++C CGK+++ + HL H + H G C CG++FS +L H+R
Sbjct: 20 KPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Score = 42.0 bits (100), Expect = 3e-06
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ C CGK+++ +L H + H G C CG++FS +A+L H+R
Sbjct: 76 KPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 42.0 bits (100), Expect = 3e-06
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP++C CGK+++ HL H + H G C CG++FS NL H+R
Sbjct: 104 KPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 39.7 bits (94), Expect = 2e-05
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ C CGK+++ +L H + H G C CG++FS L H+R
Sbjct: 132 KPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 40.6 bits (96), Expect = 3e-06
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP C +C + ++ + HL H+++ H G C++CGR F+ H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRD 52
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP +CD+CG+ + + H P + + S +L
Sbjct: 30 KPFACDICGRKFARSDERKRHRDI-QHILP-ILEDKVEELLSKNYHLENEVA 79
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 40.2 bits (95), Expect = 3e-06
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLAEHKR 79
CD CG+ ++ ++L H K H S +C CG++F+ +L EH +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 31.0 bits (71), Expect = 0.010
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
K SC CGK++ KHL H+K H C G +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSS 78
Score = 27.1 bits (61), Expect = 0.30
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 52 AHQGHPSVTCNV--CGRTFSSIANLAEHKRSRH 82
G + C+ CGR FS+ L HK+ +H
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.1 bits (95), Expect = 4e-06
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+ + CD CGK+++ + L H + H G C+ CG+ F ++L H R
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 39.7 bits (94), Expect = 1e-05
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
K + C CGK++T H S H G C VCG+ F +L H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 37.8 bits (89), Expect = 6e-05
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+P+ C +CGK + + HL GH+K H G CN+C + F + H+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSF--HRH 84
Score = 33.6 bits (78), Expect = 0.002
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLA 75
KP+ C++C K + HV S + + + +
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPS 108
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.9 bits (92), Expect = 1e-05
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
C LC ++ + L H++ + C VC + F+S + +H +H I
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 26.4 bits (57), Expect = 1.0
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 26 RTKPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
C +C K +T HV H
Sbjct: 97 TEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 37.8 bits (87), Expect = 2e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
C+ CG L H+++ H C C +F + NL +H +S+
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 23.5 bits (50), Expect = 6.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
+P+ C C ++ +L H+KS
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKS 51
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 3e-05
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH-GIT 85
+ + G +A GH C+VC S +L H S
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQ-CHVCSAVLFSPLDLDAHVASHGLHGN 208
Query: 86 GFVVSARIN 94
+ S+ I
Sbjct: 209 MTLTSSEIQ 217
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 38.3 bits (90), Expect = 5e-05
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
+ H C CGK + + L H H G C CG+ FS NL H R
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 35.2 bits (82), Expect = 6e-04
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
+ +C C K + + H+ + H G C CG+ F + L H+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT-H-GPRVHVCAECGKAFVESSKLKRHQL 55
Score = 34.0 bits (79), Expect = 0.001
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
KP C CGK ++L +L HV+ H G C C + F+ NL H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 37.1 bits (87), Expect = 7e-05
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 26 RTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRS 80
T CGKTYT + HL H+++ H G C+ CG F+ L H R
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 34.0 bits (79), Expect = 0.001
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP+ CD CG + + L H + H GH C C R FS +LA H + RH
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMK-RH 88
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 36.3 bits (85), Expect = 8e-05
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
P C C + + L H + H CN C +NL++H + HG
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 38.0 bits (89), Expect = 8e-05
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHP--------SVTCNVCGRTFSSIANLAEHKR 79
C +T++ L HV H G P C G++F + L H R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Score = 34.6 bits (80), Expect = 0.001
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 35 CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
G + K K + S C RTFS++ L H H
Sbjct: 3 SGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
Score = 32.6 bits (75), Expect = 0.007
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
KP C CGK + +++L H ++ H G C C R F++ ++ +H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 30.7 bits (70), Expect = 0.034
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRS 80
C GK++ L H++ H G C CG+ F+ NL HKR+
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 37.1 bits (87), Expect = 1e-04
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
KP+ CD C + ++ + L H + H G C C R FS +L H R
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 37.1 bits (87), Expect = 1e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
KP C C + ++ + HL H ++ H G +C C + F+ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 36.0 bits (84), Expect = 3e-04
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
+P C C K Y HL H + H G C+ C R FS L H+R
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 37.9 bits (87), Expect = 2e-04
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHGI--TGFVVSARIN 94
CNVC FS+++ L+EH RS H + + + IN
Sbjct: 119 CNVCNARFSTMSALSEHLRSDHRDDASTLLATPMIN 154
Score = 27.1 bits (59), Expect = 1.1
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 17 PAEPLFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVT 60
+ + + C++C ++ L H++S H+ S
Sbjct: 104 QSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTL 147
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 35.9 bits (82), Expect = 3e-04
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 22 FRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSR 81
+R D + + + + + L + + C CG +F S+ +L+ H
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Query: 82 H 82
Sbjct: 104 K 104
Score = 29.0 bits (64), Expect = 0.11
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 42 AKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+ S G C C + ++ L H
Sbjct: 4 GSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 36.4 bits (85), Expect = 4e-04
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLAEHKRSRHG 83
KP C C K +T HL H + H G + TC+ C F++ AN+ +H H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 34.5 bits (80), Expect = 0.002
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLAEHKR 79
K + C CG Y L H H G C C + F+S+ +L H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Score = 32.2 bits (74), Expect = 0.011
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 28 KPHSC--DLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
P+ C + C K ++L L H + H G+P + C + +H H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 31.8 bits (73), Expect = 0.015
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCN--VCGRTFSSIANLAEHKR 79
+ + C CGK + L H + +H C C + FS + L H++
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 4e-04
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
+ C CG + +S + C C + A L + + + G
Sbjct: 16 DRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESG 64
Score = 27.3 bits (60), Expect = 0.33
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 36 GKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
G + + K + H G S C+ CG F + L+ K
Sbjct: 1 GSSGSSGKR-----QKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP 40
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 4e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 20 PLFRFDRTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLA 75
P R + H C CGKTY + HL H ++ H G +C+ C R F+ L+
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELS 66
Query: 76 EHKRS 80
H+R+
Sbjct: 67 RHRRT 71
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSA--HQGHPSVTCNVCG-----RTFSSIANLAEHKR 79
D C + + + L H+ S H C+ G R F + L H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Score = 34.1 bits (79), Expect = 0.002
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 28 KPHSC--DLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRSRHG 83
KP+ C + C K ++ A H H C + C + ++ ++L +H ++ HG
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 29.5 bits (67), Expect = 0.086
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 28 KPHSCDLCG-----KTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRS 80
K C G + + L H++ H G C C +++S + NL H RS
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 28.7 bits (65), Expect = 0.17
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 60 TCNVCGRTFSSIANLAEHKRSRHGITG 86
+ C + F S L H S H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGE 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 34.9 bits (80), Expect = 5e-04
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 26 RTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS--------VTCNVCGRTFSSIANLAEH 77
C +T++ L HV H G P C G++F + L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 78 KRS 80
R
Sbjct: 82 IRV 84
Score = 29.2 bits (65), Expect = 0.094
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+ S C RTFS++ L H H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 8e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 31 SCDLCGK-TYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
C C T L H++ + ++ C C + F S A L H + H
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 24.9 bits (53), Expect = 3.4
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 29 PHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVT 60
C C K + L H + H PS
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA 85
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.001
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKRS 80
+ + H CD C K YT + HL H+++ H G C C F+ L H R
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 31.4 bits (72), Expect = 0.010
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
KP+ C C + + L H + H G C VC R+FS +LA H + RH
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMK-RH 98
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 33.4 bits (77), Expect = 0.002
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
P+ C C K ++L L H K H G+P + C + +H H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 30.7 bits (70), Expect = 0.017
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 30 HSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNV--CGRTFSSIANLAEHKR 79
+ C CGK + L H + +H C C + FS + L H++
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.2 bits (75), Expect = 0.002
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG---HPSVTCNVCGRTFSSIANLAEHKRSRH 82
+ C C HV S H + S C C L+EH H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 32.3 bits (74), Expect = 0.004
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+P++C + C + ++ + L H++ H G C +C R FS +L H R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR-TH 72
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.7 bits (69), Expect = 0.010
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVC 64
K +C++CGK + HL H S H G +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 28.4 bits (63), Expect = 0.071
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
G S+ + V C +CG+ F + +L HK S
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 31.8 bits (71), Expect = 0.011
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
C C + + H + + +TC C RTF S ++ H+ H
Sbjct: 45 CPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.9 bits (61), Expect = 0.24
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGH 56
K +C C +T+ + +W H H +
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 27.6 bits (60), Expect = 0.36
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 17 PAEPLFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAE 76
+ + + + C LC + H + + C C F S E
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQE 60
Query: 77 HKRS 80
H+
Sbjct: 61 HESK 64
Score = 23.7 bits (50), Expect = 10.0
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 50 KSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
S + C +C SS+ H+R
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA 43
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.8 bits (66), Expect = 0.024
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 25 DRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
DR KP++CD+CGK Y L H +H
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.1 bits (66), Expect = 0.034
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ S C+ CGR F+ ++L +H+R
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 29.1 bits (66), Expect = 0.037
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K H C CG+ +TL HL H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.045
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ G C C +TF I +L +HKR
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 26.3 bits (59), Expect = 0.34
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C C KT+ HL H
Sbjct: 11 KPYECKECRKTFIQIGHLNQH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (65), Expect = 0.045
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 50 KSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S G C+ C + FSS + L H++
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 25.6 bits (57), Expect = 0.86
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C C K ++ +L H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVH 29
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 28.6 bits (65), Expect = 0.048
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + L++H++
Sbjct: 15 CNECGKVFSRNSQLSQHQK 33
Score = 24.0 bits (53), Expect = 2.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K + C+ CGK ++ L H
Sbjct: 11 KRYKCNECGKVFSRNSQLSQH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.052
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+VC ++F ++L H+R
Sbjct: 15 CDVCHKSFRYGSSLTVHQR 33
Score = 24.4 bits (54), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ CD+C K++ L H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.067
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+VCG+ FS ++L H+R
Sbjct: 15 CDVCGKEFSQSSHLQTHQR 33
Score = 27.1 bits (61), Expect = 0.22
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K + CD+CGK ++ + HL H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 28.2 bits (64), Expect = 0.068
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 60 TCNVCGRTFSSIANLAEHKR 79
C +CG F + L H R
Sbjct: 13 PCEICGTRFRHLQTLKSHLR 32
Score = 25.2 bits (56), Expect = 1.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHV 49
KP+ C++CG + + L H+
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHL 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.073
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F + +NL H+
Sbjct: 15 CNECGKAFRAHSNLTTHQV 33
Score = 23.6 bits (52), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + +L H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.075
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C VC + F+ A+LA+H++
Sbjct: 15 CKVCSKAFTQKAHLAQHQK 33
Score = 26.3 bits (59), Expect = 0.43
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C +C K +T HL H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.3 bits (64), Expect = 0.078
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHGITG 86
C CG+ F +L H R H TG
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYH--TG 38
Score = 26.4 bits (59), Expect = 0.42
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+ C CGK + L H + H G
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTG 38
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.079
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 50 KSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S+ G C+ CG+ F +N +H+R
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 24.8 bits (55), Expect = 1.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+ H C CGK + A + H
Sbjct: 11 RGHRCSDCGKFFLQASNFIQH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.080
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+VC + FS A+L +H+R
Sbjct: 15 CDVCRKAFSHHASLTQHQR 33
Score = 23.6 bits (52), Expect = 4.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ CD+C K ++ L H
Sbjct: 11 KPYECDVCRKAFSHHASLTQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.081
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ ++S NL H++
Sbjct: 15 CEKCGKGYNSKFNLDMHQK 33
Score = 24.0 bits (53), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK Y +L H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.089
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + LA H+R
Sbjct: 15 CNECGKAFSQTSKLARHQR 33
Score = 24.4 bits (54), Expect = 2.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK ++ L H
Sbjct: 11 KPYKCNECGKAFSQTSKLARH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.090
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS + LA H+R
Sbjct: 15 CNECGKAFSQTSKLARHQR 33
Score = 24.0 bits (53), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK ++ L H
Sbjct: 11 KPYQCNECGKAFSQTSKLARH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.090
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS ++L H+
Sbjct: 15 CNECGKAFSVYSSLTTHQV 33
Score = 22.9 bits (50), Expect = 8.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +++ L H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.090
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CNVCG+ F A+L +H R
Sbjct: 15 CNVCGKAFVLSAHLNQHLR 33
Score = 26.3 bits (59), Expect = 0.37
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+SC++CGK + L+ HL H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.093
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ ANL +H+R
Sbjct: 15 CGECGKAFAQKANLTQHQR 33
Score = 24.4 bits (54), Expect = 2.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK + +L H
Sbjct: 11 KPYRCGECGKAFAQKANLTQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.095
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ FS ++L H+
Sbjct: 15 CNQCGKAFSVRSSLTTHQA 33
Score = 24.0 bits (53), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +++ L H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.11
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN C + F++ +NL H+R
Sbjct: 15 CNECQKAFNTKSNLMVHQR 33
Score = 23.2 bits (51), Expect = 5.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ C K + +L H
Sbjct: 11 KPYECNECQKAFNTKSNLMVH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ G CN CG+TFS + L+ H+R
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGKT++ L H
Sbjct: 11 KPYGCNECGKTFSQKSILSAH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.12
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ ++ NL H+R
Sbjct: 15 CEDCGKGYNRRLNLDMHQR 33
Score = 24.8 bits (55), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK Y +L H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.12
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ I +L H++
Sbjct: 15 CNECGKAFTRIFHLTRHQK 33
Score = 25.6 bits (57), Expect = 0.80
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K ++C+ CGK +T HL H
Sbjct: 11 KSYNCNECGKAFTRIFHLTRH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.5 bits (62), Expect = 0.12
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S G C CG F +A+L H
Sbjct: 1 GSSGS-SGGEKPYKCETCGARFVQVAHLRAHVL 32
Score = 27.1 bits (61), Expect = 0.19
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CG + HL H
Sbjct: 10 KPYKCETCGARFVQVAHLRAH 30
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 27.5 bits (62), Expect = 0.12
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKR 79
G C+ CG+ FS +L H R
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 25.2 bits (56), Expect = 0.99
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ CD CGK ++ L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.13
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C VCG+ F ++L +H
Sbjct: 15 CQVCGKAFRVSSHLVQHHS 33
Score = 25.6 bits (57), Expect = 0.71
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C +CGK + ++ HL H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.5 bits (62), Expect = 0.13
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++F +L H+R
Sbjct: 13 CQECGKSFRQKGSLTLHER 31
Score = 24.1 bits (53), Expect = 2.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+ + C CGK++ L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ +G C+ CG++FS L +H
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 24.0 bits (53), Expect = 2.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK+++ + L H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++L H R
Sbjct: 15 CNECGKVFTQNSHLTNHWR 33
Score = 25.1 bits (56), Expect = 0.94
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 27.6 bits (62), Expect = 0.14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 60 TCNVCGRTFSSIANLAEHKR 79
C CG++F+ +LA H+R
Sbjct: 13 LCGQCGKSFTQRGSLAVHQR 32
Score = 25.3 bits (56), Expect = 1.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P+ C CGK++T L H
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVH 30
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN C +TF+ ++L H+R
Sbjct: 15 CNECKKTFTQSSSLTVHQR 33
Score = 24.4 bits (54), Expect = 2.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K C+ C KT+T + L H
Sbjct: 11 KLFKCNECKKTFTQSSSLTVH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++F + L +H+R
Sbjct: 15 CKECGKSFRWASCLLKHQR 33
Score = 24.5 bits (54), Expect = 2.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP++C CGK++ A L H
Sbjct: 11 KPYNCKECGKSFRWASCLLKH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.15
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F + L+ H+R
Sbjct: 15 CNECGKVFRHNSYLSRHQR 33
Score = 24.8 bits (55), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + +L H
Sbjct: 11 KPYKCNECGKVFRHNSYLSRH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.15
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++LA H+R
Sbjct: 15 CNECGKVFTQNSHLANHQR 33
Score = 25.6 bits (57), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLANH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.6 bits (62), Expect = 0.16
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S TC+ CG+ F I+ L H+R
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQR 33
Score = 25.2 bits (56), Expect = 1.00
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K H+CD CGK + L H
Sbjct: 11 KSHTCDECGKNFCYISALRIH 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.16
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 55 GHPSVTCNVCGRTFSSIANLAEHKRSRHGITGF---VVSARI 93
H VT + G T E + G TG +V+A
Sbjct: 247 AHYVVTAKLLGFTP------GELRSYLKGATGHSQGLVTAVA 282
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ FS L +H+R
Sbjct: 15 CIDCGKAFSDHIGLNQHRR 33
Score = 23.2 bits (51), Expect = 5.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK ++ L H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.17
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ G CN CG+ F ++L EH +
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 24.8 bits (55), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+P+ C+ CGK + HL H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.17
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ G CN CG+ F ++LA H R
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 26.7 bits (60), Expect = 0.26
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+P C+ CGK + HL GH
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 27.1 bits (61), Expect = 0.18
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++F + NL H+R
Sbjct: 15 CTHCGKSFRAKGNLVTHQR 33
Score = 24.0 bits (53), Expect = 2.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK++ +L H
Sbjct: 11 KPFECTHCGKSFRAKGNLVTH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.18
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++LA H+R
Sbjct: 15 CNECGKVFTQNSHLARHRR 33
Score = 25.6 bits (57), Expect = 0.73
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLARH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.19
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+VCG+ FS +L+ H+R
Sbjct: 15 CSVCGKAFSHRQSLSVHQR 33
Score = 23.2 bits (51), Expect = 5.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C +CGK ++ + L H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.19
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F + ++LA H+
Sbjct: 15 CNECGKAFRARSSLAIHQA 33
Score = 24.0 bits (53), Expect = 2.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + L H
Sbjct: 11 KPYKCNECGKAFRARSSLAIH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.21
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F +L EH+R
Sbjct: 15 CSECGKAFHRHTHLNEHRR 33
Score = 24.4 bits (54), Expect = 1.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK + HL H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.22
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F ++LA H+
Sbjct: 15 CHECGKVFRRNSHLARHQL 33
Score = 25.9 bits (58), Expect = 0.63
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK + HL H
Sbjct: 11 KPYKCHECGKVFRRNSHLARH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.1 bits (60), Expect = 0.22
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
G S+ G C+ C R F+ L +H+R+
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 24.4 bits (53), Expect = 1.9
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
P C C + +T +L H ++ H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERT-HARKSG 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.23
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C++CG++F + L H
Sbjct: 15 CDICGKSFCGRSRLNRHSM 33
Score = 24.8 bits (55), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP CD+CGK++ L H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 0.23
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F ++ +H+R
Sbjct: 15 CMECGKAFGDNSSCTQHQR 33
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.24
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F + L H+R
Sbjct: 15 CNECGKAFIWKSLLIVHER 33
Score = 23.3 bits (51), Expect = 5.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + L H
Sbjct: 11 KPYECNECGKAFIWKSLLIVH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.24
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ FS L H+R
Sbjct: 15 CHECGKAFSRKYQLISHQR 33
Score = 23.6 bits (52), Expect = 3.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P+ C CGK ++ L H
Sbjct: 11 NPYECHECGKAFSRKYQLISH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.24
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG++F ++L H+R
Sbjct: 15 CNECGKSFIQKSHLNRHRR 33
Score = 25.6 bits (57), Expect = 0.66
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK++ HL H
Sbjct: 11 KPYICNECGKSFIQKSHLNRH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.24
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F A L H+R
Sbjct: 15 CDYCGKAFGLSAELVRHQR 33
Score = 24.8 bits (55), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ CD CGK + L+ L H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.25
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++LA H+
Sbjct: 15 CNECGKVFTQNSHLARHRG 33
Score = 25.2 bits (56), Expect = 0.94
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLARH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.25
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C VCG+ F+ +NL +H++
Sbjct: 15 CTVCGKAFTDRSNLIKHQK 33
Score = 24.0 bits (53), Expect = 2.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+P+ C +CGK +T +L H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKH 31
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 0.26
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 61 CNVCGRTFSSIANLAEHKRSR 81
C C R F NL H RS+
Sbjct: 53 CLACARYFIDSTNLKTHFRSK 73
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.27
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++LA H+
Sbjct: 15 CNECGKVFTQNSHLARHRG 33
Score = 25.2 bits (56), Expect = 1.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLARH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 26.7 bits (60), Expect = 0.27
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++FS + LA H+R
Sbjct: 15 CAECGKSFSISSQLATHQR 33
Score = 24.8 bits (55), Expect = 1.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK+++++ L H
Sbjct: 11 KPFECAECGKSFSISSQLATH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.29
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++++ +L +H+R
Sbjct: 15 CGECGKSYNQRVHLTQHQR 33
Score = 25.6 bits (57), Expect = 0.76
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK+Y HL H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.29
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ FS L H++
Sbjct: 15 CCECGKVFSRKDQLVSHQK 33
Score = 23.2 bits (51), Expect = 6.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P+ C CGK ++ L H
Sbjct: 11 NPYECCECGKVFSRKDQLVSH 31
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 0.29
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 31 SCDLCGK-TYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
SC C + L H+++ Q TC+ CG+ S+A + H + H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQ--EMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 23.7 bits (50), Expect = 8.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 26 RTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
+ + +C CGK + HV + H PS
Sbjct: 59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 26.7 bits (60), Expect = 0.30
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ FS +L +H+R
Sbjct: 15 CKECGKAFSQTTHLIQHQR 33
Score = 25.2 bits (56), Expect = 0.93
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK ++ HL H
Sbjct: 11 KPYECKECGKAFSQTTHLIQH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 0.30
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
G S+ G C CG FS +L +H RS
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 25.2 bits (56), Expect = 1.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
KP C CG ++ + L+ H++S
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRS 34
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.30
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C+ CGK +T HL H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH 31
Score = 26.4 bits (59), Expect = 0.46
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ ++L H+R
Sbjct: 15 CEECGKRFTQNSHLHSHQR 33
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.30
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F+ ++L H+
Sbjct: 15 CNECGKVFTQNSHLVRHRG 33
Score = 25.1 bits (56), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK +T HL H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.32
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F +LA H R
Sbjct: 15 CKECGKAFRQNIHLASHLR 33
Score = 25.9 bits (58), Expect = 0.49
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK + HL H
Sbjct: 11 KPFKCKECGKAFRQNIHLASH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 26.7 bits (60), Expect = 0.32
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ C +TFS + L H+R
Sbjct: 15 CSQCAKTFSLKSQLIVHQR 33
Score = 24.4 bits (54), Expect = 2.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C C KT++L L H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.5 bits (59), Expect = 0.32
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 50 KSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
S G +C C TFS L +H++
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 25.4 bits (56), Expect = 0.81
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+SC C +T++ L H K
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQK 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.33
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++FS L +H+R
Sbjct: 15 CKECGKSFSRAPCLLKHER 33
Score = 24.0 bits (53), Expect = 2.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K ++C CGK+++ A L H
Sbjct: 11 KLYNCKECGKSFSRAPCLLKH 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 0.33
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G S+ Q CN C +TFS L +H+R
Sbjct: 1 GSSGSSGQKEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 24.0 bits (51), Expect = 3.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPS 58
K C+ C KT++ +K+L H + +G S
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.34
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F + ++L H+R
Sbjct: 15 CIECGKAFKTKSSLICHRR 33
Score = 22.9 bits (50), Expect = 7.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+P+ C CGK + L H
Sbjct: 11 RPYECIECGKAFKTKSSLICH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C++CG++F+ + L H++
Sbjct: 15 CSICGKSFTKKSQLHVHQQ 33
Score = 24.4 bits (54), Expect = 2.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C +CGK++T L H
Sbjct: 11 KPYECSICGKSFTKKSQLHVH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.34
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG+ F S + L H R
Sbjct: 15 CNECGKAFRSKSYLIIHTR 33
Score = 24.0 bits (53), Expect = 2.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + +L H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F + L EH+R
Sbjct: 15 CEECGKAFIHDSQLQEHQR 33
Score = 24.0 bits (53), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP++C+ CGK + L H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.36
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ C ++FS L H+R
Sbjct: 15 CSQCEKSFSGKLRLLVHQR 33
Score = 24.0 bits (53), Expect = 2.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P+ C C K+++ L H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ + L H+R
Sbjct: 15 CEECGKRFTQNSQLHSHQR 33
Score = 25.6 bits (57), Expect = 0.84
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C+ CGK +T L H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 0.37
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ FSS + L H R
Sbjct: 15 CSECGKAFSSKSYLIIHMR 33
Score = 23.7 bits (52), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK ++ +L H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 26.4 bits (59), Expect = 0.38
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C C FS ++L H+
Sbjct: 15 CRECDMCFSQASSLRLHQN 33
Score = 24.0 bits (53), Expect = 3.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K C C ++ A L H
Sbjct: 11 KTWKCRECDMCFSQASSLRLH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.39
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ + L+ H++
Sbjct: 15 CTECGKAFTRKSTLSMHQK 33
Score = 24.0 bits (53), Expect = 2.5
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
K C CGK +T L H
Sbjct: 11 KHFECTECGKAFTRKSTLSMH 31
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.2 bits (58), Expect = 0.44
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 26 RTKPHSCDL--CGKTYTLAKHLWGHVKSAHQG 55
+ K H C + CGK Y HL H++ H G
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRW-HTG 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.48
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
CN CG++F A+L +H+R
Sbjct: 15 CNECGKSFIQSAHLIQHQR 33
Score = 25.9 bits (58), Expect = 0.58
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+PH C+ CGK++ + HL H
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.49
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG++FS + L H+R
Sbjct: 15 CRECGKSFSFNSQLIVHQR 33
Score = 24.4 bits (54), Expect = 2.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KPH C CGK+++ L H
Sbjct: 11 KPHECRECGKSFSFNSQLIVH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.50
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ +NL H++
Sbjct: 15 CAECGKAFTDRSNLFTHQK 33
Score = 24.0 bits (53), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK +T +L+ H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.50
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F +L H
Sbjct: 15 CEECGKGFICRRDLYTHHM 33
Score = 24.0 bits (53), Expect = 3.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C+ CGK + + L+ H
Sbjct: 11 KPYKCEECGKGFICRRDLYTH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.54
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F + L+ H+R
Sbjct: 15 CSECGKAFIQKSTLSMHQR 33
Score = 23.6 bits (52), Expect = 3.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+ + C CGK + L H
Sbjct: 11 RHYECSECGKAFIQKSTLSMH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.54
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F+ +NL +H++
Sbjct: 15 CAECGKAFTIRSNLIKHQK 33
Score = 24.0 bits (53), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK +T+ +L H
Sbjct: 11 KPYICAECGKAFTIRSNLIKH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.58
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ C + F++ +NL H+R
Sbjct: 15 CSECQKAFNTKSNLIVHQR 33
Score = 22.8 bits (50), Expect = 8.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C C K + +L H
Sbjct: 11 KPFECSECQKAFNTKSNLIVH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.60
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG++F + L H+R
Sbjct: 15 CSDCGKSFIKKSQLHVHQR 33
Score = 23.7 bits (52), Expect = 3.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK++ L H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 25.6 bits (57), Expect = 0.68
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F+ L H+R
Sbjct: 13 CSECGKAFNRKDQLISHQR 31
Score = 23.6 bits (52), Expect = 3.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P+ C CGK + L H
Sbjct: 9 NPYECSECGKAFNRKDQLISH 29
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.69
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F+ NL H++
Sbjct: 15 CSECGKVFTHKTNLIIHQK 33
Score = 23.6 bits (52), Expect = 4.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
P C CGK +T +L H
Sbjct: 11 NPFICSECGKVFTHKTNLIIH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 25.6 bits (57), Expect = 0.73
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ FS + L H +
Sbjct: 15 CVECGKGFSRRSALNVHHK 33
Score = 24.4 bits (54), Expect = 2.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK ++ L H
Sbjct: 11 KPFKCVECGKGFSRRSALNVH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.74
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F+ + L H++
Sbjct: 15 CSDCGKAFTRKSGLHIHQQ 33
Score = 23.6 bits (52), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK +T L H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 0.83
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F + + H+R
Sbjct: 15 CEECGKGFYTNSQCYSHQR 33
Score = 24.1 bits (53), Expect = 3.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C+ CGK + + H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.86
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG+ F+ + L H+R
Sbjct: 15 CSECGKAFARKSTLIMHQR 33
Score = 22.8 bits (50), Expect = 7.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+ + C CGK + L H
Sbjct: 11 RHYECSECGKAFARKSTLIMH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ + +L H+R
Sbjct: 15 CVECGKGYKRRLDLDFHQR 33
Score = 24.4 bits (54), Expect = 2.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK Y L H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 25.0 bits (55), Expect = 1.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
G C C R+FS +LA H++ RH
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRK-RH 34
Score = 23.8 bits (52), Expect = 2.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP C C ++++ + HL H K
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRK 32
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C+ CG++F+ + L H++
Sbjct: 15 CSDCGKSFTWKSRLRIHQK 33
Score = 23.6 bits (52), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK++T L H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ F + L H+R
Sbjct: 15 CTECGKAFCWKSQLIMHQR 33
Score = 24.1 bits (53), Expect = 2.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP C CGK + L H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.3 bits (54), Expect = 1.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 51 SAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
S G +C VCG F ++ H RS G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.5 bits (52), Expect = 2.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+SC +CG + + HV+S
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 26.1 bits (57), Expect = 1.5
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 57 PSVTCNVCGRTFSSIANLAEHKRSRHG 83
C C R F+S H + H
Sbjct: 14 QHTPCLFCDRLFASAEETFSHCKLEHQ 40
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 24.3 bits (52), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP C +CGK +T A L HV+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVR 23
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A
{Homo sapiens} SCOP: a.26.1.1
Length = 187
Score = 25.8 bits (56), Expect = 1.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 29 PHSCDLCGKTYTLAKHLWGHVKS------AHQGHP 57
PH DLC ++ LA+ + + + HQG
Sbjct: 11 PHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLN 45
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 24.3 bits (52), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ C+ CGK + + L H++
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.5 bits (55), Expect = 3.1
Identities = 2/33 (6%), Positives = 9/33 (27%)
Query: 50 KSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
++ +G + + + +L
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.4 bits (51), Expect = 3.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
+ C++C + + +HL H +S
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 22.7 bits (49), Expect = 7.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 61 CNVCGRTFSSIANLAEHKRS 80
C VC R F+ +L H RS
Sbjct: 5 CEVCTRAFARQEHLKRHYRS 24
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 25.1 bits (55), Expect = 4.0
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 34/79 (43%)
Query: 24 FDRTKPHSCDLC-----------GKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIA 72
+PH GKT TL+K L + S+
Sbjct: 8 SIEGRPHMDFKNINLGIFGHIDHGKT-TLSKVLTEIA-----------------STSAHD 49
Query: 73 NLAEHKRSRHGIT---GFV 88
L E ++ R GIT GF
Sbjct: 50 KLPESQK-R-GITIDIGFS 66
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 4.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
+P+SC +CGK ++L + H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.0 bits (54), Expect = 4.4
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 59 VTCNVCGRTFSSIANLAEHKRSRHGIT-----GFVVSARI 93
+TC C + E R G G V+S ++
Sbjct: 22 LTCPECKV---YPPKIVE--RFSEGDVVCALCGLVLSDKL 56
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 24.2 bits (52), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 52 AHQGHPSVTCNVCGRTF---SSIANLAEHKRSRH 82
A++ S+ C VC +TF +S EH ++H
Sbjct: 39 ANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKH 72
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 23.3 bits (50), Expect = 5.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
K ++C LC + +T L H + H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus
laevis} SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 24.5 bits (52), Expect = 5.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 61 CNVCGRTFSSIANLAEHKRSRH 82
C VC S + H +SR
Sbjct: 35 CKVCSAVLISESQKLAHYQSRK 56
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 23.2 bits (49), Expect = 6.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 32 CDLCGKTYTLAKHLWGHVKSAH 53
C C K Y+ K+L H++ AH
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDAH 33
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 23.7 bits (51), Expect = 7.3
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
KP CD+C + + + K G + C C
Sbjct: 26 KKPKFCDVCARM------IVLNNK---FG---LRCKNCKTNI 55
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 22.8 bits (48), Expect = 7.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 31 SCDLCGKTYTLAKHLWGHVKSA 52
+C C K + + L H+K+A
Sbjct: 4 ACPACPKRFMRSDALSKHIKTA 25
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 24.2 bits (52), Expect = 7.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 21 LFRFDRTK---PHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVC 64
L RF + SC+ CG + + AHQ S C++C
Sbjct: 123 LVRFVESGLLQLSSCNCCGGNF---------ITHAHQPVGSFACSLC 160
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 24.5 bits (53), Expect = 7.5
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 20/58 (34%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRHGIT 85
PH C+ C +WG + V C CG L HK+ +
Sbjct: 219 GPHWCEYCANF------MWGLIAQG------VKCADCG--------LNVHKQCSKMVP 256
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 24.0 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 9 AYEIGLGIPAEPLFRFDRTKPHSCDLCG 36
A E+GL P EP F KP++ L
Sbjct: 57 AEELGLSRPEEPAL-F--WKPNTS-LLP 80
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 22.9 bits (48), Expect = 8.4
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+S Q TC +C NL H RH
Sbjct: 13 EKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 24.2 bits (53), Expect = 9.6
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 8 TAYEIGLGIPAEPLFRFDRTKPHSCDLCGKTYT-----LAKHLWG-HVKS-AHQ 54
A E L + + D ++C++C + + W H+ S H+
Sbjct: 339 KALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHK 392
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 24.2 bits (53), Expect = 9.6
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 35 CGKTYT-------------LAKHLWGHVKSAHQGHPSVTCNV 63
GK+YT + L+ + SA P+++ NV
Sbjct: 148 SGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNV 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.459
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,453,927
Number of extensions: 71451
Number of successful extensions: 694
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 365
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)