RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12166
(94 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.7 bits (87), Expect = 6e-06
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
K + C CGK++T H+ H G C VCG+ F +L H +
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 32.3 bits (74), Expect = 7e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNV 63
KP+ C CGK ++ HL GH+K H C V
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 28.4 bits (64), Expect = 0.019
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 60 TCNVCGRTFSSIANLAEHKRSRH 82
C CG+ FS +L H + H
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVH 29
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.2 bits (66), Expect = 0.012
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
H G C +C F+ + H +H
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHT 33
Score = 27.6 bits (62), Expect = 0.036
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAH 53
KP+ C +C +T + + H+ H
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKH 32
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.9 bits (63), Expect = 0.024
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C CG+ FS + L H+R
Sbjct: 5 CLECGKAFSQNSGLINHQR 23
Score = 24.1 bits (53), Expect = 0.76
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
KP+ C CGK ++ L H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.1 bits (63), Expect = 0.026
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
H G C+ C +TF L H + H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 25.4 bits (56), Expect = 0.31
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAH 53
KP++C C KT+ + L H K H
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYH 32
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.6 bits (62), Expect = 0.034
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 61 CNVCGRTFSSIANLAEHKR 79
C +C R FS +L H R
Sbjct: 6 CRICMRNFSRSDHLTTHIR 24
Score = 25.3 bits (56), Expect = 0.23
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP C +C + ++ + HL H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.2 bits (61), Expect = 0.049
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKR 79
H G C CG+ FS + L +H+R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 25.7 bits (57), Expect = 0.23
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP+ C CGK ++ + L H +
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQR 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.2 bits (61), Expect = 0.058
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
C VC R F+ +L H RS
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.0 bits (58), Expect = 0.16
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGH 48
+ C++C + + +HL H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 27.4 bits (61), Expect = 0.090
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 61 CNVCGRTFSSIANLAEHKRSR 81
C C R F NL H RS+
Sbjct: 18 CLACARYFIDSTNLKTHFRSK 38
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
[TaxId: 63363]}
Length = 147
Score = 27.6 bits (61), Expect = 0.18
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 20 PLFRFDRTKPHSC-DLCGKTYTLAKHLWGHVKSAHQGH 56
L + H DL G Y L + G S GH
Sbjct: 95 GLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGH 132
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (56), Expect = 0.22
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 60 TCNVCGRTFSSIANLAEHKR 79
C C + F +L++H +
Sbjct: 4 ACPECPKRFMRSDHLSKHIK 23
Score = 24.6 bits (54), Expect = 0.53
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
K +C C K + + HL H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.2 bits (55), Expect = 0.31
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKSAH 53
KP+ C L C K YT L HVK+ H
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 26.8 bits (58), Expect = 0.41
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 19 EPLFRFDRTKPHSCDL-CGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAE 76
E F + + G + + W H++S G ++T N + + +
Sbjct: 236 ERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEY 294
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 24.7 bits (54), Expect = 0.47
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKR 79
G C +C F++ AN A H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 22.8 bits (49), Expect = 2.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
+P C +C +T + H+K
Sbjct: 6 RPFVCRICLSAFTTKANCARHLK 28
>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 37
Score = 24.6 bits (53), Expect = 0.63
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 54 QGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
+G + C VC R ++ I+N H + H
Sbjct: 4 EGEHTYRCKVCSRVYTHISNFCRHYVTSH 32
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.6 bits (56), Expect = 0.75
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 58 SVTCNVCGRTFSSIANLAEHKRSRHG 83
C C R F+S H + H
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQ 40
Score = 24.8 bits (54), Expect = 1.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 25 DRTKPHSCDLCGKTYTLAKHLWGHVKSAHQ 54
+ C C + + A+ + H K HQ
Sbjct: 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 25.0 bits (54), Expect = 0.97
Identities = 11/57 (19%), Positives = 13/57 (22%)
Query: 21 LFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
L R + P LC + V R F I NL
Sbjct: 30 LLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISA 86
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
K +C++CGK + HL H K +H G
Sbjct: 4 KQVACEICGKIFRDVYHLNRH-KLSHSG 30
Score = 23.5 bits (50), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 59 VTCNVCGRTFSSIANLAEHKRSRHG 83
V C +CG+ F + +L HK S G
Sbjct: 6 VACEICGKIFRDVYHLNRHKLSHSG 30
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.5 bits (51), Expect = 1.2
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 60 TCNVCGRTFSSIANLAEHKRSRHG 83
CG++F+ +L EH +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSD 28
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.5 bits (51), Expect = 1.3
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 60 TCNVCGRTFSSIANLAEHKRS 80
TC+ C R F S L H
Sbjct: 7 TCSFCKREFRSAQALGGHMNV 27
Score = 22.4 bits (48), Expect = 3.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKS 51
+ ++C C + + A+ L GH+
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNV 27
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.5 bits (51), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 47 GHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKR 79
G + G C C R+FS +LA H++
Sbjct: 1 GSTRG-STGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 22.4 bits (48), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVK 50
KP C C ++++ + HL H K
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRK 32
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 24.7 bits (54), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 30 HSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVC 64
SC+ CG + + AHQ S C++C
Sbjct: 131 SSCNCCGGNF---------ITHAHQPVGSFACSLC 156
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.1 bits (49), Expect = 1.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 29 PHSCDLCGKTYTLAKHLWGHVKS 51
PH C++CGK ++ L H++
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRC 23
Score = 21.9 bits (46), Expect = 4.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 61 CNVCGRTFSSIANLAEHKRSRHG 83
C VCG+ FS L H R G
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHTG 26
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.7 bits (54), Expect = 1.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 29 PHSCDLCGKTYTLAKHLWGHVKS------AHQGHPS 58
PH DLC ++ LA+ + + + HQG
Sbjct: 1 PHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNK 36
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.1 bits (50), Expect = 1.9
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGHVKS 51
+P+ C C K + + +L H+ +
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 21.2 bits (45), Expect = 8.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 64 CGRTFSSIANLAEHKRS 80
C + F+ NL H +
Sbjct: 10 CNKKFAQSTNLKSHILT 26
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 24.8 bits (53), Expect = 2.0
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 11/47 (23%)
Query: 32 CDLCGKTYTLAKHLWGHVKSA----HQGH-------PSVTCNVCGRT 67
C C + +GH+ A H G C CG+
Sbjct: 66 CQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKL 112
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 23.1 bits (50), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 64 CGRTFSSIANLAEHKR 79
C +++S + NL H R
Sbjct: 10 CRKSYSRLENLKTHLR 25
Score = 22.7 bits (49), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGH 48
KPH C C K+Y+ ++L H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 86
Score = 23.8 bits (51), Expect = 2.3
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 21 LFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRS 80
+ R T+P C L AKHL + G C+V F S+ ++ H +
Sbjct: 33 VIRQSETRPGECVLTFNFQGKAKHL--RLSLNGHGQ----CHVQHLWFQSVFDMLRHFHT 86
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 22.3 bits (48), Expect = 3.2
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 60 TCNV--CGRTFSSIANLAEHKR 79
C CG+ F+ L HKR
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKR 25
Score = 22.3 bits (48), Expect = 3.7
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 28 KPHSCDL--CGKTYTLAKHLWGH 48
+P C CGK +T + L H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 22.3 bits (48), Expect = 3.5
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 28 KPHSCD--LCGKTYTLAKHLWGH 48
+P++C C + ++ + L H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
Score = 22.3 bits (48), Expect = 3.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 64 CGRTFSSIANLAEHKR 79
C R FS A+L H R
Sbjct: 10 CDRRFSRSADLTRHIR 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 22.3 bits (48), Expect = 3.8
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 61 CNV--CGRTFSSIANLAEHKR 79
C+ C + F +L HK+
Sbjct: 6 CDHPGCDKAFVRNHDLIRHKK 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 22.4 bits (48), Expect = 3.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 53 HQGHPSVTCNVCGRTFSSIANLAEHKRSRHG 83
+ C+ CG++FS ++L++H+R+ G
Sbjct: 7 QRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 22.8 bits (48), Expect = 4.2
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 41 LAKHLWG--HVKSAHQGHPSVTCNVCGRTFSSIANLAEHKRSRH 82
AKH G +S Q TC +C NL H RH
Sbjct: 5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.5 bits (50), Expect = 4.3
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 22 FRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVC 64
+ C+ C K G S ++ HP C +C
Sbjct: 58 LGMLGSASVVCEDCKKNVCTKC---GVETSNNRPHPVWLCKIC 97
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein
7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 23.4 bits (50), Expect = 4.5
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 21 LFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAH-QGHPSVTCNVCGRTFSSIANLAEH 77
L R + P L KH + + +G + + F+ + L E
Sbjct: 37 LVRESQRNPQGFVLSLCHLQKVKHY--LILPSEEEGRLYFSMDDGQTRFTDLLQLVEF 92
>d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 209
Score = 23.6 bits (50), Expect = 4.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 45 LWGHVKSAHQGHPSVTC 61
LWG + +P+V
Sbjct: 145 LWGVGRVIALENPAVWG 161
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 23.2 bits (50), Expect = 4.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 58 SVTCNVCGRTF---SSIANLAEHKRSRH 82
S+ C VC +TF +S EH ++H
Sbjct: 45 SIQCKVCMQTFICTTSEVKCREHAEAKH 72
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 23.2 bits (50), Expect = 5.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 22 FRFDRTKPHSCDLCGKTYTLAKH 44
F + + C CG Y L H
Sbjct: 72 FWLHKGEAQRCPSCGTHYKLVPH 94
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 21.9 bits (46), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 28 KPHSCDLCGKTYTLAKHLWGHVKSAHQG 55
KP+SC +CG + + HV+S H G
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRS-HDG 28
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.6 bits (46), Expect = 7.0
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 61 CNV--CGRTFSSIANLAEHKRSRHG 83
C CG+ FS NL H R G
Sbjct: 5 CTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 103
Score = 22.7 bits (48), Expect = 8.6
Identities = 8/57 (14%), Positives = 14/57 (24%)
Query: 21 LFRFDRTKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTFSSIANLAEH 77
L R + P + LC L + + F ++ L
Sbjct: 29 LIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSK 85
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 21.9 bits (46), Expect = 8.8
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 27 TKPHSCDLCGKTYTLAKHLWGHVKSAHQGHPSVTCNVCGRTF 68
PH C+ C +WG + V C+ CG
Sbjct: 13 RGPHWCEYCANF------MWGLIAQG------VRCSDCGLNV 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.459
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,853
Number of extensions: 14387
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 91
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.6 bits)