Query psy12168
Match_columns 150
No_of_seqs 113 out of 1878
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:26:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.9 1.4E-20 3E-25 126.6 11.1 129 2-130 50-178 (193)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 3.5E-18 7.6E-23 111.4 9.9 110 8-129 48-158 (160)
3 KOG0027|consensus 99.8 2E-17 4.4E-22 108.7 12.4 127 15-147 7-134 (151)
4 COG5126 FRQ1 Ca2+-binding prot 99.7 9.6E-17 2.1E-21 104.7 11.6 121 15-146 19-140 (160)
5 KOG0027|consensus 99.7 2.3E-16 4.9E-21 103.8 10.3 107 10-127 38-149 (151)
6 PTZ00183 centrin; Provisional 99.7 5.4E-16 1.2E-20 102.3 12.1 122 15-146 16-138 (158)
7 PTZ00184 calmodulin; Provision 99.7 1.2E-15 2.5E-20 99.6 10.8 122 15-146 10-132 (149)
8 KOG0034|consensus 99.7 3.1E-15 6.8E-20 100.6 12.7 114 13-130 63-178 (187)
9 KOG0028|consensus 99.7 3.6E-15 7.7E-20 95.9 11.6 122 16-147 33-155 (172)
10 PTZ00183 centrin; Provisional 99.6 1.9E-14 4.2E-19 94.9 11.3 106 13-129 50-156 (158)
11 PTZ00184 calmodulin; Provision 99.6 6.9E-14 1.5E-18 91.2 11.4 103 13-126 44-147 (149)
12 KOG0028|consensus 99.5 1.1E-13 2.4E-18 89.1 9.6 111 6-127 59-170 (172)
13 KOG0037|consensus 99.5 1.5E-13 3.2E-18 92.8 10.6 98 15-129 93-190 (221)
14 KOG0036|consensus 99.4 2.5E-12 5.4E-17 94.1 12.1 115 15-145 13-129 (463)
15 KOG0030|consensus 99.4 7.1E-12 1.5E-16 79.0 11.4 122 12-141 7-131 (152)
16 KOG0037|consensus 99.4 6.4E-12 1.4E-16 85.0 11.2 112 16-144 57-170 (221)
17 PF13499 EF-hand_7: EF-hand do 99.4 1.4E-12 3E-17 73.9 6.9 66 53-125 1-66 (66)
18 KOG0036|consensus 99.4 2.8E-12 6.2E-17 93.8 9.8 103 12-130 47-149 (463)
19 KOG0044|consensus 99.3 4.2E-11 9.1E-16 80.9 12.3 124 13-147 23-160 (193)
20 PF13499 EF-hand_7: EF-hand do 99.3 8.1E-12 1.8E-16 70.7 6.4 61 18-78 2-66 (66)
21 PLN02964 phosphatidylserine de 99.3 2.8E-11 6.1E-16 94.7 10.5 98 15-127 142-243 (644)
22 KOG0038|consensus 99.3 9.3E-11 2E-15 74.7 10.4 113 15-133 70-183 (189)
23 KOG0031|consensus 99.2 1.7E-10 3.8E-15 74.0 10.3 100 16-126 32-164 (171)
24 cd05022 S-100A13 S-100A13: S-1 99.2 9E-11 2E-15 70.1 7.1 67 52-129 8-77 (89)
25 cd05022 S-100A13 S-100A13: S-1 99.1 3.6E-10 7.8E-15 67.5 7.1 68 15-82 7-77 (89)
26 KOG0034|consensus 99.1 2.3E-09 5E-14 72.4 10.9 118 15-146 32-159 (187)
27 cd05027 S-100B S-100B: S-100B 99.1 1.3E-09 2.9E-14 65.1 7.7 67 15-81 7-80 (88)
28 KOG0377|consensus 99.1 4E-09 8.8E-14 78.3 11.2 108 16-130 464-618 (631)
29 KOG4223|consensus 99.0 3.6E-09 7.7E-14 75.6 10.4 134 13-146 74-212 (325)
30 cd05027 S-100B S-100B: S-100B 99.0 1.6E-09 3.6E-14 64.7 6.8 70 52-128 8-80 (88)
31 cd05026 S-100Z S-100Z: S-100Z 99.0 2.9E-09 6.4E-14 64.3 7.8 71 52-129 10-83 (93)
32 cd05031 S-100A10_like S-100A10 99.0 3.7E-09 8.1E-14 64.0 7.9 75 51-132 7-84 (94)
33 cd05025 S-100A1 S-100A1: S-100 99.0 4.1E-09 8.8E-14 63.6 8.0 72 51-129 8-82 (92)
34 cd05026 S-100Z S-100Z: S-100Z 99.0 3.9E-09 8.5E-14 63.8 7.6 68 15-82 9-83 (93)
35 cd05025 S-100A1 S-100A1: S-100 99.0 5E-09 1.1E-13 63.2 8.0 68 15-82 8-82 (92)
36 KOG4223|consensus 99.0 3.1E-09 6.8E-14 75.9 8.1 122 19-146 166-289 (325)
37 cd00051 EFh EF-hand, calcium b 99.0 4.4E-09 9.5E-14 57.9 7.0 61 18-78 2-62 (63)
38 cd05031 S-100A10_like S-100A10 99.0 4.5E-09 9.7E-14 63.7 7.5 67 16-82 8-81 (94)
39 cd00252 SPARC_EC SPARC_EC; ext 99.0 4E-09 8.7E-14 66.0 7.1 61 50-125 46-106 (116)
40 PF13833 EF-hand_8: EF-hand do 99.0 4.8E-09 1E-13 56.9 6.5 52 29-80 1-53 (54)
41 cd00052 EH Eps15 homology doma 98.9 6.8E-09 1.5E-13 58.6 7.3 61 19-81 2-62 (67)
42 smart00027 EH Eps15 homology d 98.9 1.1E-08 2.4E-13 62.1 8.2 67 15-83 9-75 (96)
43 cd00052 EH Eps15 homology doma 98.9 5.9E-09 1.3E-13 58.9 5.9 62 55-129 2-63 (67)
44 cd05029 S-100A6 S-100A6: S-100 98.9 1.1E-08 2.3E-13 61.2 7.1 66 17-82 11-81 (88)
45 cd00213 S-100 S-100: S-100 dom 98.9 1.4E-08 3.1E-13 60.6 7.4 70 52-128 8-80 (88)
46 cd00213 S-100 S-100: S-100 dom 98.9 1.6E-08 3.6E-13 60.4 7.6 68 15-82 7-81 (88)
47 smart00027 EH Eps15 homology d 98.9 1.2E-08 2.6E-13 62.0 7.1 66 51-129 9-74 (96)
48 PF13833 EF-hand_8: EF-hand do 98.9 4E-09 8.6E-14 57.2 4.3 51 66-127 2-53 (54)
49 cd05029 S-100A6 S-100A6: S-100 98.9 8.7E-09 1.9E-13 61.5 5.8 70 52-129 10-81 (88)
50 cd00252 SPARC_EC SPARC_EC; ext 98.8 1.6E-08 3.4E-13 63.4 6.8 61 15-79 47-107 (116)
51 cd00051 EFh EF-hand, calcium b 98.8 1.3E-08 2.9E-13 55.9 5.7 61 54-125 2-62 (63)
52 KOG0030|consensus 98.8 1.3E-07 2.8E-12 60.0 10.3 106 9-126 40-150 (152)
53 cd05023 S-100A11 S-100A11: S-1 98.8 3.8E-08 8.2E-13 58.9 6.9 68 15-82 8-82 (89)
54 cd05023 S-100A11 S-100A11: S-1 98.8 7.8E-08 1.7E-12 57.5 8.1 72 52-129 9-82 (89)
55 PLN02964 phosphatidylserine de 98.8 2.7E-08 6E-13 78.3 7.4 64 17-80 180-243 (644)
56 PF14658 EF-hand_9: EF-hand do 98.7 1.7E-07 3.7E-12 52.3 6.7 61 20-80 2-64 (66)
57 KOG0031|consensus 98.6 6E-07 1.3E-11 58.0 9.2 95 51-145 31-148 (171)
58 PF00036 EF-hand_1: EF hand; 98.6 9.5E-08 2.1E-12 44.9 3.9 26 18-43 2-27 (29)
59 PF00036 EF-hand_1: EF hand; 98.6 7.8E-08 1.7E-12 45.2 3.3 28 53-80 1-28 (29)
60 KOG4251|consensus 98.6 3.1E-07 6.8E-12 63.7 7.0 113 14-126 99-263 (362)
61 cd05030 calgranulins Calgranul 98.5 5.6E-07 1.2E-11 53.7 7.0 67 16-82 8-81 (88)
62 KOG2643|consensus 98.5 2.2E-07 4.7E-12 69.1 5.8 105 26-132 209-319 (489)
63 cd05030 calgranulins Calgranul 98.4 2.2E-06 4.7E-11 51.2 7.0 70 52-128 8-80 (88)
64 KOG0041|consensus 98.3 3.1E-06 6.6E-11 57.1 7.0 68 51-129 98-165 (244)
65 PF14658 EF-hand_9: EF-hand do 98.3 2.1E-06 4.6E-11 47.9 5.2 62 56-127 2-64 (66)
66 KOG0751|consensus 98.3 7.5E-06 1.6E-10 62.1 9.4 126 16-143 74-224 (694)
67 KOG2562|consensus 98.3 4.4E-06 9.5E-11 62.7 7.5 108 14-123 309-420 (493)
68 PRK12309 transaldolase/EF-hand 98.2 2.5E-06 5.5E-11 64.0 5.8 59 11-82 329-387 (391)
69 PF14788 EF-hand_10: EF hand; 98.2 9.9E-06 2.1E-10 42.7 6.0 50 32-81 1-50 (51)
70 KOG4666|consensus 98.2 3.6E-06 7.7E-11 60.7 5.4 105 16-132 259-364 (412)
71 PF13202 EF-hand_5: EF hand; P 98.2 3.4E-06 7.3E-11 38.1 3.4 22 19-40 2-23 (25)
72 PF13405 EF-hand_6: EF-hand do 98.2 2.5E-06 5.4E-11 40.7 2.9 25 55-79 3-27 (31)
73 PRK12309 transaldolase/EF-hand 98.1 1.6E-05 3.5E-10 59.7 8.3 56 48-127 330-385 (391)
74 KOG2643|consensus 98.1 3.9E-05 8.4E-10 57.5 9.8 96 19-129 236-348 (489)
75 KOG0041|consensus 98.1 3.8E-05 8.3E-10 51.9 8.9 99 16-123 99-199 (244)
76 PF13202 EF-hand_5: EF hand; P 98.1 3.8E-06 8.2E-11 38.0 2.9 24 102-125 2-25 (25)
77 PF13405 EF-hand_6: EF-hand do 98.1 4.7E-06 1E-10 39.7 3.1 26 101-126 2-27 (31)
78 PF12763 EF-hand_4: Cytoskelet 98.0 6.8E-05 1.5E-09 46.1 8.2 64 15-81 9-72 (104)
79 cd05024 S-100A10 S-100A10: A s 98.0 6.1E-05 1.3E-09 44.9 7.6 65 17-82 9-78 (91)
80 cd05024 S-100A10 S-100A10: A s 98.0 7.5E-05 1.6E-09 44.6 7.9 70 52-129 8-78 (91)
81 PF10591 SPARC_Ca_bdg: Secrete 98.0 1.7E-06 3.6E-11 54.1 0.6 64 48-124 50-113 (113)
82 PF14788 EF-hand_10: EF hand; 98.0 2.1E-05 4.5E-10 41.5 4.5 49 68-127 1-49 (51)
83 KOG4251|consensus 98.0 4.1E-05 9E-10 53.4 6.8 124 20-145 194-328 (362)
84 KOG0377|consensus 97.9 5E-05 1.1E-09 57.1 7.0 65 17-81 548-616 (631)
85 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.1E-05 2.3E-10 50.5 1.5 60 15-76 53-112 (113)
86 KOG0040|consensus 97.7 0.00024 5.1E-09 60.5 7.8 98 18-125 2255-2359(2399)
87 PF12763 EF-hand_4: Cytoskelet 97.7 0.00042 9.2E-09 42.6 7.1 67 50-130 8-74 (104)
88 KOG0040|consensus 97.6 0.00016 3.4E-09 61.5 6.2 90 52-145 2253-2345(2399)
89 KOG4065|consensus 97.6 0.00047 1E-08 42.6 6.3 69 56-124 71-142 (144)
90 KOG0038|consensus 97.4 0.00048 1E-08 44.4 5.5 87 31-131 54-140 (189)
91 PF05042 Caleosin: Caleosin re 97.3 0.0058 1.3E-07 40.7 9.5 106 16-126 7-165 (174)
92 smart00054 EFh EF-hand, calciu 97.2 0.00073 1.6E-08 30.3 3.5 26 18-43 2-27 (29)
93 smart00054 EFh EF-hand, calciu 97.2 0.00061 1.3E-08 30.6 2.8 27 101-127 2-28 (29)
94 KOG2562|consensus 97.1 0.0016 3.4E-08 49.4 6.2 97 19-129 281-381 (493)
95 KOG0169|consensus 97.1 0.0042 9.1E-08 49.9 8.4 100 15-129 135-234 (746)
96 KOG4347|consensus 97.0 0.0045 9.8E-08 48.9 7.6 69 5-74 544-612 (671)
97 KOG0751|consensus 96.9 0.0074 1.6E-07 46.5 8.0 101 17-130 34-139 (694)
98 PF09279 EF-hand_like: Phospho 96.8 0.0062 1.3E-07 35.7 5.8 62 18-80 2-69 (83)
99 KOG0046|consensus 96.8 0.0055 1.2E-07 47.3 6.6 69 53-130 20-88 (627)
100 KOG1029|consensus 96.7 0.0062 1.3E-07 49.2 6.6 64 53-129 196-259 (1118)
101 KOG3555|consensus 96.6 0.0056 1.2E-07 45.0 5.1 105 17-136 212-319 (434)
102 KOG0046|consensus 96.3 0.023 5E-07 44.1 7.3 65 16-81 19-86 (627)
103 PF09279 EF-hand_like: Phospho 96.2 0.0086 1.9E-07 35.0 3.5 69 53-131 1-73 (83)
104 KOG4578|consensus 96.1 0.0035 7.5E-08 45.7 2.0 69 52-130 333-401 (421)
105 KOG4578|consensus 96.1 0.0065 1.4E-07 44.4 3.3 65 16-80 333-398 (421)
106 KOG4065|consensus 95.5 0.053 1.1E-06 33.7 5.0 58 20-77 71-142 (144)
107 PF09069 EF-hand_3: EF-hand; 95.5 0.18 3.9E-06 30.1 7.1 76 52-132 3-80 (90)
108 KOG4347|consensus 95.5 0.048 1E-06 43.3 5.9 77 33-121 535-612 (671)
109 KOG3866|consensus 95.4 0.03 6.6E-07 40.8 4.4 72 55-126 247-323 (442)
110 KOG1029|consensus 94.9 0.051 1.1E-06 44.2 4.7 66 13-80 192-257 (1118)
111 PLN02952 phosphoinositide phos 94.8 0.49 1.1E-05 38.0 9.9 93 29-127 13-110 (599)
112 KOG3555|consensus 94.4 0.058 1.3E-06 39.8 3.7 61 16-80 250-310 (434)
113 KOG1955|consensus 93.9 0.13 2.8E-06 39.9 4.8 68 11-80 226-293 (737)
114 KOG4666|consensus 93.7 0.08 1.7E-06 38.9 3.2 69 51-129 258-326 (412)
115 KOG0169|consensus 93.4 0.96 2.1E-05 37.0 8.9 104 15-131 171-278 (746)
116 KOG1955|consensus 92.9 0.19 4.2E-06 39.0 4.3 61 54-127 233-293 (737)
117 KOG0039|consensus 92.6 0.51 1.1E-05 38.4 6.5 92 30-131 2-93 (646)
118 KOG1707|consensus 92.2 2 4.4E-05 34.3 9.1 115 16-130 195-346 (625)
119 KOG2243|consensus 90.8 0.48 1E-05 41.6 4.7 65 56-132 4061-4125(5019)
120 PF09068 EF-hand_2: EF hand; 90.8 2.9 6.4E-05 26.6 9.0 105 20-126 4-124 (127)
121 KOG0035|consensus 89.7 3.9 8.4E-05 34.4 8.8 96 17-123 748-848 (890)
122 KOG0035|consensus 89.3 1.6 3.5E-05 36.6 6.5 77 51-133 746-822 (890)
123 TIGR01848 PHA_reg_PhaR polyhyd 89.1 1.7 3.7E-05 26.7 5.0 75 59-134 10-84 (107)
124 PF05517 p25-alpha: p25-alpha 88.5 5.3 0.00011 26.3 11.0 69 19-87 2-76 (154)
125 PF09068 EF-hand_2: EF hand; 87.0 2 4.4E-05 27.3 4.7 65 15-79 40-124 (127)
126 KOG4004|consensus 86.2 0.2 4.3E-06 34.3 -0.2 55 59-126 194-249 (259)
127 PF05042 Caleosin: Caleosin re 85.8 6.2 0.00014 26.6 6.6 63 16-79 96-165 (174)
128 KOG4286|consensus 83.9 6.7 0.00015 32.5 7.1 106 18-131 472-584 (966)
129 KOG2243|consensus 81.6 3.2 6.8E-05 37.1 4.7 61 20-81 4061-4121(5019)
130 KOG1265|consensus 81.4 15 0.00032 31.4 8.2 76 48-130 217-302 (1189)
131 PLN02228 Phosphoinositide phos 81.3 9.5 0.00021 30.8 7.1 67 12-80 20-92 (567)
132 PF00404 Dockerin_1: Dockerin 80.7 2.9 6.2E-05 17.8 2.3 16 26-41 1-16 (21)
133 PF05517 p25-alpha: p25-alpha 80.2 10 0.00023 24.9 6.1 64 61-132 11-74 (154)
134 KOG0042|consensus 80.1 3.3 7.1E-05 33.2 4.1 67 52-129 593-659 (680)
135 PF11116 DUF2624: Protein of u 79.6 10 0.00022 22.4 8.0 69 32-108 14-82 (85)
136 PF08414 NADPH_Ox: Respiratory 77.5 9.7 0.00021 23.1 4.8 59 17-81 31-93 (100)
137 PF09069 EF-hand_3: EF-hand; 77.2 13 0.00028 22.2 7.0 61 17-80 4-75 (90)
138 PF14513 DAG_kinase_N: Diacylg 77.0 4.6 0.0001 26.2 3.5 51 67-130 6-63 (138)
139 PF12174 RST: RCD1-SRO-TAF4 (R 75.2 4.3 9.3E-05 23.0 2.7 48 31-81 7-54 (70)
140 PF08726 EFhand_Ca_insen: Ca2+ 74.1 3.8 8.2E-05 23.2 2.3 29 50-79 4-32 (69)
141 KOG0042|consensus 72.1 11 0.00024 30.4 5.0 64 18-81 595-658 (680)
142 KOG4301|consensus 72.0 32 0.00068 26.0 7.1 110 17-132 111-220 (434)
143 KOG0998|consensus 71.1 1.4 3E-05 37.1 0.1 63 17-81 284-346 (847)
144 PLN02222 phosphoinositide phos 70.7 22 0.00047 28.9 6.5 65 14-80 23-90 (581)
145 PLN02230 phosphoinositide phos 70.1 25 0.00055 28.6 6.8 67 13-80 26-102 (598)
146 PLN02952 phosphoinositide phos 69.3 15 0.00033 29.9 5.4 56 65-130 13-68 (599)
147 PF08414 NADPH_Ox: Respiratory 68.4 6.3 0.00014 23.9 2.5 44 3-46 48-94 (100)
148 KOG2419|consensus 67.7 7.4 0.00016 31.8 3.4 65 16-80 437-533 (975)
149 PLN02228 Phosphoinositide phos 67.1 24 0.00053 28.5 6.1 69 49-128 21-93 (567)
150 PF02761 Cbl_N2: CBL proto-onc 66.6 24 0.00053 20.8 5.5 51 31-81 21-71 (85)
151 KOG4004|consensus 64.1 2.7 5.9E-05 28.9 0.4 57 21-79 192-249 (259)
152 KOG2871|consensus 63.6 13 0.00027 28.4 3.7 67 12-78 305-372 (449)
153 KOG1265|consensus 61.1 24 0.00053 30.1 5.2 67 14-80 219-299 (1189)
154 cd07313 terB_like_2 tellurium 59.0 36 0.00079 20.3 6.4 54 66-128 13-66 (104)
155 PLN02222 phosphoinositide phos 53.9 46 0.00099 27.1 5.6 68 50-128 23-91 (581)
156 KOG0506|consensus 53.6 76 0.0016 25.3 6.5 97 19-115 89-197 (622)
157 PLN02230 phosphoinositide phos 53.4 1E+02 0.0022 25.3 7.5 71 49-128 26-103 (598)
158 PF11629 Mst1_SARAH: C termina 51.7 33 0.00071 17.9 3.0 26 115-140 7-32 (49)
159 KOG4286|consensus 50.8 56 0.0012 27.5 5.6 97 15-123 419-529 (966)
160 CHL00185 ycf59 magnesium-proto 49.2 57 0.0012 24.5 5.0 68 52-130 41-110 (351)
161 PLN02508 magnesium-protoporphy 48.5 56 0.0012 24.6 4.9 30 101-130 81-110 (357)
162 KOG2557|consensus 48.3 1.2E+02 0.0027 23.3 6.7 53 31-83 73-125 (427)
163 PRK13654 magnesium-protoporphy 48.0 57 0.0012 24.6 4.9 79 51-144 44-124 (355)
164 KOG1264|consensus 46.1 2E+02 0.0043 25.0 8.4 109 15-132 180-298 (1267)
165 PF07879 PHB_acc_N: PHB/PHA ac 45.4 24 0.00052 19.6 2.1 22 59-80 10-31 (64)
166 PRK09462 fur ferric uptake reg 45.3 45 0.00098 21.6 3.8 43 102-144 20-63 (148)
167 KOG1707|consensus 44.1 28 0.00061 28.2 3.1 62 16-80 315-377 (625)
168 KOG0998|consensus 43.5 19 0.00041 30.6 2.2 64 16-81 11-74 (847)
169 KOG2871|consensus 43.4 17 0.00037 27.7 1.7 62 51-122 308-369 (449)
170 PF01023 S_100: S-100/ICaBP ty 43.3 46 0.001 16.8 3.5 33 99-131 6-40 (44)
171 PF12631 GTPase_Cys_C: Catalyt 40.2 69 0.0015 18.0 5.8 50 52-108 23-72 (73)
172 cd01047 ACSF Aerobic Cyclase S 39.7 99 0.0021 23.0 5.0 29 102-130 66-94 (323)
173 KOG1785|consensus 39.0 1.3E+02 0.0029 23.4 5.7 81 31-128 189-275 (563)
174 TIGR02029 AcsF magnesium-proto 38.5 88 0.0019 23.4 4.6 30 101-130 75-104 (337)
175 KOG1954|consensus 38.3 69 0.0015 24.9 4.2 58 17-77 445-502 (532)
176 PF08044 DUF1707: Domain of un 38.2 48 0.0011 17.5 2.6 30 29-58 20-49 (53)
177 PLN02223 phosphoinositide phos 38.0 1.8E+02 0.004 23.6 6.6 67 13-80 13-92 (537)
178 KOG2419|consensus 37.3 1.6E+02 0.0035 24.6 6.2 77 52-130 437-536 (975)
179 PF09336 Vps4_C: Vps4 C termin 36.8 51 0.0011 18.0 2.6 25 32-56 29-53 (62)
180 KOG4629|consensus 35.0 1.5E+02 0.0033 25.0 5.9 60 52-129 404-463 (714)
181 PF12486 DUF3702: ImpA domain 34.3 1.4E+02 0.003 19.7 6.8 37 52-88 69-105 (148)
182 KOG4403|consensus 33.7 56 0.0012 25.6 3.1 88 28-129 40-131 (575)
183 PF08976 DUF1880: Domain of un 32.5 63 0.0014 20.3 2.7 30 50-79 5-34 (118)
184 KOG3866|consensus 32.4 89 0.0019 23.4 3.9 49 9-65 237-285 (442)
185 PLN02223 phosphoinositide phos 32.1 2.7E+02 0.0058 22.7 6.7 78 49-129 13-94 (537)
186 PF01325 Fe_dep_repress: Iron 31.9 90 0.0019 16.8 4.7 41 97-139 6-46 (60)
187 KOG2301|consensus 31.5 24 0.00052 32.2 1.1 74 51-132 1416-1489(1592)
188 PF08100 Dimerisation: Dimeris 31.2 31 0.00066 18.2 1.1 32 111-142 18-49 (51)
189 PF13608 Potyvirid-P3: Protein 29.9 1E+02 0.0023 24.2 4.2 44 96-140 286-329 (445)
190 COG0735 Fur Fe2+/Zn2+ uptake r 29.0 1.4E+02 0.0031 19.3 4.1 31 114-144 35-66 (145)
191 PF09373 PMBR: Pseudomurein-bi 28.4 75 0.0016 14.8 2.9 16 66-81 2-17 (33)
192 PRK11639 zinc uptake transcrip 28.3 1.1E+02 0.0024 20.3 3.7 31 113-143 39-70 (169)
193 PF09066 B2-adapt-app_C: Beta2 27.2 56 0.0012 20.0 2.0 21 112-132 3-23 (114)
194 PF08220 HTH_DeoR: DeoR-like h 27.1 1.1E+02 0.0023 16.2 2.9 27 113-139 12-38 (57)
195 PF05383 La: La domain; Inter 27.0 99 0.0021 16.8 2.7 24 21-44 20-43 (61)
196 PF07492 Trehalase_Ca-bi: Neut 26.7 16 0.00034 17.0 -0.5 18 103-120 3-20 (30)
197 COG5562 Phage envelope protein 26.0 62 0.0013 20.9 2.0 22 24-45 80-101 (137)
198 PF07531 TAFH: NHR1 homology t 25.6 1.1E+02 0.0024 18.5 2.9 15 66-80 38-52 (96)
199 PF03979 Sigma70_r1_1: Sigma-7 25.4 81 0.0018 18.2 2.3 46 16-65 7-52 (82)
200 PF12419 DUF3670: SNF2 Helicas 24.3 45 0.00097 21.5 1.2 58 65-124 80-138 (141)
201 PF09182 PuR_N: Bacterial puri 24.3 1.5E+02 0.0032 16.9 4.4 43 99-141 4-46 (70)
202 KOG4403|consensus 24.2 2.5E+02 0.0054 22.2 5.1 61 16-80 68-129 (575)
203 PF08279 HTH_11: HTH domain; 22.9 1.2E+02 0.0027 15.4 2.6 27 114-140 14-40 (55)
204 PF08708 PriCT_1: Primase C te 22.2 1.5E+02 0.0033 16.2 4.4 28 54-81 38-65 (71)
205 PHA02105 hypothetical protein 21.6 1.3E+02 0.0028 16.3 2.4 54 68-129 4-59 (68)
206 PF13075 DUF3939: Protein of u 21.1 1.4E+02 0.0031 19.4 2.9 49 68-131 9-57 (140)
207 smart00549 TAFH TAF homology. 20.9 2E+02 0.0043 17.3 3.3 16 66-81 37-52 (92)
208 PHA03102 Small T antigen; Revi 20.8 2.6E+02 0.0057 18.5 5.1 7 52-58 22-28 (153)
209 PF01885 PTS_2-RNA: RNA 2'-pho 20.7 2.2E+02 0.0047 19.5 4.0 35 27-61 27-61 (186)
210 KOG3077|consensus 20.6 3.5E+02 0.0075 19.7 5.7 80 49-141 61-143 (260)
211 PF14848 HU-DNA_bdg: DNA-bindi 20.5 1.2E+02 0.0026 19.0 2.5 35 112-146 25-60 (124)
212 PRK00819 RNA 2'-phosphotransfe 20.4 2.2E+02 0.0049 19.3 3.9 36 27-62 28-63 (179)
213 cd08324 CARD_NOD1_CARD4 Caspas 20.3 2E+02 0.0044 17.0 4.1 48 29-81 26-73 (85)
214 PHA02335 hypothetical protein 20.3 2.3E+02 0.005 17.6 5.5 55 55-128 13-69 (118)
215 PF10208 Armet: Degradation ar 20.1 1.4E+02 0.003 19.8 2.8 35 96-130 107-141 (154)
No 1
>KOG0044|consensus
Probab=99.85 E-value=1.4e-20 Score=126.56 Aligned_cols=129 Identities=39% Similarity=0.699 Sum_probs=115.5
Q ss_pred cccccccccCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 2 SNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
+.+|..++|...+..+.+.+|..+|.+++|.|++.||+.++..+..+..++.++.+|+.||.+++|+|+.+|+..++..+
T Consensus 50 ~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 50 REIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
....+....+......++.+..+|+.+|.|+||.||++||...+...+.
T Consensus 130 ~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 130 YQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 8777764333444555789999999999999999999999998877664
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.77 E-value=3.5e-18 Score=111.44 Aligned_cols=110 Identities=28% Similarity=0.455 Sum_probs=98.1
Q ss_pred cccCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhc
Q psy12168 8 EGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMG 86 (150)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~ 86 (150)
.+|..++..++.++|..+|. +++.|+|.+|+.++.... .....+++..+|+.||.+++|+|+..+++.+++.++..+.
T Consensus 48 ~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~ 126 (160)
T COG5126 48 SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLS 126 (160)
T ss_pred HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCC
Confidence 56888889999999999999 889999999999998866 5677899999999999999999999999999998866544
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 87 RKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.+.+..+++.+|.+++|.|++++|.+.+...+
T Consensus 127 -----------deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 127 -----------DEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred -----------HHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 68999999999999999999999999876543
No 3
>KOG0027|consensus
Probab=99.76 E-value=2e-17 Score=108.73 Aligned_cols=127 Identities=23% Similarity=0.344 Sum_probs=111.1
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
...+..+|..+|.+++|.|+..|+..+++.++..++...+..+++.+|.+++|.|+++||+.++...........
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~----- 81 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE----- 81 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc-----
Confidence 456789999999999999999999999999999999999999999999999999999999999987643222110
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhccc
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQNL 147 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~~ 147 (150)
...+.+..+|+.||.+++|+||..|+..++...+... ...+..+++.+|.+-
T Consensus 82 -~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~ 134 (151)
T KOG0027|consen 82 -ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDG 134 (151)
T ss_pred -ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCC
Confidence 2346899999999999999999999999999999888 777999998888653
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.73 E-value=9.6e-17 Score=104.72 Aligned_cols=121 Identities=18% Similarity=0.261 Sum_probs=108.9
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
...+++.|..+|++++|.|+..++..+++.++..++...+..++..+|. +.+.|++.+|..++.......
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~--------- 88 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG--------- 88 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC---------
Confidence 3567899999999999999999999999999899999999999999999 999999999999988753221
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhcc
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQN 146 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~ 146 (150)
..++.+..+|+.||.|++|+|+..++..++...+..+ .+.+..+++..+.+
T Consensus 89 -~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d 140 (160)
T COG5126 89 -DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED 140 (160)
T ss_pred -CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC
Confidence 2268999999999999999999999999999999988 77899999998854
No 5
>KOG0027|consensus
Probab=99.70 E-value=2.3e-16 Score=103.77 Aligned_cols=107 Identities=27% Similarity=0.466 Sum_probs=93.4
Q ss_pred cCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccC-C----HHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHH
Q psy12168 10 VIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG-S----IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHEL 84 (150)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~----~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~ 84 (150)
+..+....+..++..+|.+++|.|++.+|+.++...... . ..+.++.+|+.+|.+++|+|+..||..++..++..
T Consensus 38 g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 38 GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 344567888999999999999999999999999876532 2 34599999999999999999999999999998655
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 85 MGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
.+ .+.+..+++.+|.|++|.|++++|.+++..
T Consensus 118 ~~-----------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 118 LT-----------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CC-----------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 44 688999999999999999999999998864
No 6
>PTZ00183 centrin; Provisional
Probab=99.70 E-value=5.4e-16 Score=102.32 Aligned_cols=122 Identities=20% Similarity=0.327 Sum_probs=102.9
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
...+..+|..+|.+++|.|+..||..++..++.......+..+|..+|.+++|.|+++||+.++.... ...
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~------ 86 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GER------ 86 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCC------
Confidence 45678899999999999999999999998876666778899999999999999999999999876531 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhcc
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQN 146 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~ 146 (150)
.....+..+|+.+|.+++|.|+.+||..++...+..+ ...+..++..++.+
T Consensus 87 -~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~ 138 (158)
T PTZ00183 87 -DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN 138 (158)
T ss_pred -CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Confidence 1146788999999999999999999999999887767 66788888888754
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.67 E-value=1.2e-15 Score=99.61 Aligned_cols=122 Identities=16% Similarity=0.298 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
...+...|..+|.+++|.|++.||..++......+....+..+|+.+|.+++|.|++++|+.++...... .
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---~------ 80 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD---T------ 80 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC---C------
Confidence 4567789999999999999999999999877766677899999999999999999999999988754211 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhcc
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQN 146 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~ 146 (150)
.....+..+|+.+|.+++|.|+.+||..++...++.+ .+.+..++..+|.+
T Consensus 81 -~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 132 (149)
T PTZ00184 81 -DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD 132 (149)
T ss_pred -cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC
Confidence 1245788999999999999999999999998887666 66788888887654
No 8
>KOG0034|consensus
Probab=99.67 E-value=3.1e-15 Score=100.63 Aligned_cols=114 Identities=32% Similarity=0.575 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHhhccCCCCc-eeHHHHHHHHHHhccC-CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCC
Q psy12168 13 DSNLYAHYVFKAFDVNCNGA-ISFRDLLVTLSTLLRG-SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQ 90 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~-i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~ 90 (150)
..+.+.++++..++.+++|. |++++|...+..+... ...++++.+|+.||.+++|.|+.+|+..++..+. +....
T Consensus 63 ~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~---~~~~~ 139 (187)
T KOG0034|consen 63 ALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV---GENDD 139 (187)
T ss_pred hcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH---ccCCc
Confidence 34567789999999988888 9999999999888754 5556999999999999999999999999998863 33333
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
. ..+..+..+...|..+|.++||.||++||.+++...|.
T Consensus 140 ~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 140 M-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred c-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 3 56778899999999999999999999999999988874
No 9
>KOG0028|consensus
Probab=99.66 E-value=3.6e-15 Score=95.89 Aligned_cols=122 Identities=18% Similarity=0.286 Sum_probs=109.1
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAAR 95 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 95 (150)
..++..|..+|++++|+|+..|+..+++..+..+..+.+..+...+|++|.|.|++++|+.++.... +..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~---~e~------- 102 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL---GER------- 102 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH---hcc-------
Confidence 5578899999999999999999999999999999999999999999999999999999999977642 211
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhccc
Q psy12168 96 KAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQNL 147 (150)
Q Consensus 96 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~~ 147 (150)
.+.+.+..+|+.+|.+++|.||..+|..++..+++.+ ++.+.+|..-+|++.
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~ 155 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDG 155 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccc
Confidence 1368999999999999999999999999999999988 888999888888764
No 10
>PTZ00183 centrin; Provisional
Probab=99.60 E-value=1.9e-14 Score=94.88 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCc
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQT 91 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 91 (150)
.....+..+|..+|.+++|.|++.||...+.... .......++.+|+.+|.+++|.|+.+||...+..++..+.
T Consensus 50 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~----- 124 (158)
T PTZ00183 50 PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT----- 124 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-----
Confidence 3456788999999999999999999999876643 4455678999999999999999999999999987643322
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
...+..+|..+|.+++|.|++++|..++...|
T Consensus 125 ------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 125 ------DEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred ------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 57889999999999999999999999987654
No 11
>PTZ00184 calmodulin; Provisional
Probab=99.57 E-value=6.9e-14 Score=91.22 Aligned_cols=103 Identities=25% Similarity=0.511 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCc
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQT 91 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 91 (150)
.....+..+|..+|.+++|.|++++|..++.... .......+..+|+.+|.+++|.|+.++|..++..++..+
T Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~------ 117 (149)
T PTZ00184 44 PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL------ 117 (149)
T ss_pred CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC------
Confidence 3356789999999999999999999999987653 345667899999999999999999999999998753221
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
..+.+..++..+|.+++|.|+++||..++.
T Consensus 118 -----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 118 -----TDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred -----CHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 146788899999999999999999998875
No 12
>KOG0028|consensus
Probab=99.53 E-value=1.1e-13 Score=89.06 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=98.8
Q ss_pred cccccCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHH-hccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHH
Q psy12168 6 SKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHEL 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~ 84 (150)
..+.++......+.++..-+|+++.|+|++++|...+.. +....+.+.+..+|+.+|.+++|.|++.+|+.+...+|+.
T Consensus 59 mralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen 138 (172)
T KOG0028|consen 59 MRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN 138 (172)
T ss_pred HHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc
Confidence 345677777888899999999999999999999999766 4466789999999999999999999999999999999776
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 85 MGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
++ .+.+..+...+|.+++|-|+-+||..+|..
T Consensus 139 lt-----------D~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 139 LT-----------DEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cc-----------HHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 55 688999999999999999999999998864
No 13
>KOG0037|consensus
Probab=99.53 E-value=1.5e-13 Score=92.80 Aligned_cols=98 Identities=22% Similarity=0.435 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
.+.++-|...+|.+.+|+|+++||...+..+ +.++.+|+.+|.|++|.|+..||..++..+|-.+.
T Consensus 93 ~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls-------- 158 (221)
T KOG0037|consen 93 IETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLS-------- 158 (221)
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCC--------
Confidence 3445556666666666666666666666554 56666666666666666666666666666554443
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.+..+.+++++|..++|.|.+++|.++|..+.
T Consensus 159 ---pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 159 ---PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred ---HHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 35555666666666666666666666665444
No 14
>KOG0036|consensus
Probab=99.45 E-value=2.5e-12 Score=94.10 Aligned_cols=115 Identities=21% Similarity=0.347 Sum_probs=67.1
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccC-CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG-SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDA 93 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 93 (150)
+..++.+|..+|.+++|.++..++...+..+..+ +..+..+.+|...|.+.+|.|+++||++++..-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------------ 80 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------------ 80 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------------
Confidence 3445566666666666666666666665555433 445556666666666666666666666665542
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhc
Q psy12168 94 ARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQ 145 (150)
Q Consensus 94 ~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~ 145 (150)
|.++..+|...|.++||.|+..|+...+...+..+ .+.+..++..+|+
T Consensus 81 ----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~ 129 (463)
T KOG0036|consen 81 ----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDK 129 (463)
T ss_pred ----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhcc
Confidence 44555566666666666666666666666665555 4445555555544
No 15
>KOG0030|consensus
Probab=99.42 E-value=7.1e-12 Score=79.02 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=104.7
Q ss_pred CChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccC--CCCceeHHHHHHHHHHHHHHhcCCC
Q psy12168 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDIN--GDGCISRSELTQIVQAVHELMGRKN 89 (150)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~I~~~e~~~~l~~~~~~~~~~~ 89 (150)
.++-...+.+|..+|..+||+|+..+...+++.++.+++...+......+..+ +-..|+|++|...+..+++....
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q-- 84 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ-- 84 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc--
Confidence 34457789999999999999999999999999999999999999999988777 56789999999999988654322
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhh
Q psy12168 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLK 141 (150)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~ 141 (150)
.+-+..-..++.||++++|.|...|++.++.+.+..+ ...++.++.
T Consensus 85 ------~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Lla 131 (152)
T KOG0030|consen 85 ------GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLA 131 (152)
T ss_pred ------CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHc
Confidence 2356788899999999999999999999999999998 556776654
No 16
>KOG0037|consensus
Probab=99.41 E-value=6.4e-12 Score=84.98 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=98.1
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
..+...|...|+++.|.|+-+|+..++.... .+.+.+.++.+...+|.+.+|.|.+.||+.+|+.+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------- 123 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------- 123 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------------
Confidence 3677899999999999999999999987433 56778999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhh
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVST 144 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d 144 (150)
..+..+|+.+|+|+.|+|+..|+...+...+-.+ .+....+++.-|
T Consensus 124 ----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 124 ----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYD 170 (221)
T ss_pred ----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999999999888 444555555544
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=1.4e-12 Score=73.91 Aligned_cols=66 Identities=33% Similarity=0.641 Sum_probs=53.8
Q ss_pred HHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy12168 53 KLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 53 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~ 125 (150)
+++.+|+.+|++++|.|+.+||..++..++.... .....+.+..+|+.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-------DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-------HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3578899999999999999999998887642221 34456788999999999999999999999875
No 18
>KOG0036|consensus
Probab=99.40 E-value=2.8e-12 Score=93.80 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCc
Q psy12168 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQT 91 (150)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 91 (150)
..+....+.+|+.+|.|.+|.++++||...++.. +..+..+|+..|.+.||.|+..|+..+++.++..+.
T Consensus 47 ~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~----- 116 (463)
T KOG0036|consen 47 KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLS----- 116 (463)
T ss_pred CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccC-----
Confidence 5667889999999999999999999999999765 789999999999999999999999999999865544
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
.+++..+|+.+|+++.+.|+++||.+.+...+.
T Consensus 117 ------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 117 ------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred ------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 678888999999999999999999999988884
No 19
>KOG0044|consensus
Probab=99.35 E-value=4.2e-11 Score=80.88 Aligned_cols=124 Identities=20% Similarity=0.377 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHhhccCC-CCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCC
Q psy12168 13 DSNLYAHYVFKAFDVNC-NGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQ 90 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~-~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~ 90 (150)
-+...++.++..+-.+. +|.++.++|..++..+. .+.+..-...+|+.+|.+++|.|++.||+.++..+. .|
T Consensus 23 f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~--rG---- 96 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS--RG---- 96 (193)
T ss_pred CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc--CC----
Confidence 34556777777776554 79999999999998876 567888899999999999999999999998887652 12
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh------------hHHHHHHhHhhhhhccc
Q psy12168 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST------------QLEKSIESCLKVSTQNL 147 (150)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~------------~~~~~i~~~~~~~d~~~ 147 (150)
..++.++.+|+.+|.|++|+|+++|+..++...-. ...+.+..+++.+|.|=
T Consensus 97 -----t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~ 160 (193)
T KOG0044|consen 97 -----TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNK 160 (193)
T ss_pred -----cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCC
Confidence 23677888999999999999999999877654332 12445777888877763
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=8.1e-12 Score=70.72 Aligned_cols=61 Identities=33% Similarity=0.430 Sum_probs=53.3
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccCC----HHHHHHHhhhhhccCCCCceeHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGS----IYEKLRWTFKLYDINGDGCISRSELTQIV 78 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~----~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 78 (150)
++++|..+|.+++|.|+.+||..++....... ....+..+|+.+|++++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999887433 44667777999999999999999999764
No 21
>PLN02964 phosphatidylserine decarboxylase
Probab=99.30 E-value=2.8e-11 Score=94.69 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHH---HHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCC
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEK---LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQ 90 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~---~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~ 90 (150)
...+.+.|..+|++++|++ +..++..++ ..+++.+ +..+|+.+|.+++|.|+++||..++..++..
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~------ 211 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL------ 211 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC------
Confidence 3557788999999999987 666676666 3555554 8999999999999999999999999865321
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
..++.+..+|+.+|.|++|.|+.+||..++..
T Consensus 212 -----~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 212 -----VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred -----CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 12578999999999999999999999999888
No 22
>KOG0038|consensus
Probab=99.28 E-value=9.3e-11 Score=74.68 Aligned_cols=113 Identities=23% Similarity=0.421 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhcc-CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR-GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDA 93 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 93 (150)
+.+-+++...+..+|.|.+++.+|+..++.+.. .+..-++..+|+.||-++++.|..+++...+..+.+ . ..+
T Consensus 70 npfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr----~--eLs 143 (189)
T KOG0038|consen 70 NPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR----D--ELS 143 (189)
T ss_pred ChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh----c--cCC
Confidence 445677888888999999999999999988774 466778999999999999999999999999987621 1 122
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHH
Q psy12168 94 ARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLE 133 (150)
Q Consensus 94 ~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~ 133 (150)
.+...-....+....|.++||.|++.||..++...|..++
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFls 183 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLS 183 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHh
Confidence 3333456778899999999999999999999988886553
No 23
>KOG0031|consensus
Probab=99.25 E-value=1.7e-10 Score=74.01 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=86.8
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCC---------------------------------HHHHHHHhhhhhc
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGS---------------------------------IYEKLRWTFKLYD 62 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~---------------------------------~~~~~~~~f~~~d 62 (150)
...++.|..+|.|+||.|+.+++...+..+++.. +++.+..+|+.||
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999887776432 3567789999999
Q ss_pred cCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 63 INGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 63 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
.+++|.|.-+.+...|...+..+. .+++..+|+.+-.+..|.++|..|..++.
T Consensus 112 ~~~~G~I~~d~lre~Ltt~gDr~~-----------~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTTMGDRFT-----------DEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred ccCCCccCHHHHHHHHHHhcccCC-----------HHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999998776655 68999999999999999999999999886
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.21 E-value=9e-11 Score=70.11 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=56.8
Q ss_pred HHHHHhhhhhcc-CCCCceeHHHHHHHHHH-HHHHhcCCCCchHHHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 52 EKLRWTFKLYDI-NGDGCISRSELTQIVQA-VHELMGRKNQTDAARKAK-EQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 52 ~~~~~~f~~~d~-~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
..+..+|+.||. +++|.|+..||+.++.. ++..++ . +.+..+++..|.|+||.|+++||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls-----------~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLK-----------DVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhcc-----------CHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456889999999 99999999999999988 654433 2 678999999999999999999999888665
Q ss_pred h
Q psy12168 129 S 129 (150)
Q Consensus 129 ~ 129 (150)
-
T Consensus 77 ~ 77 (89)
T cd05022 77 A 77 (89)
T ss_pred H
Confidence 4
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.13 E-value=3.6e-10 Score=67.51 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhcc-CCCCceeHHHHHHHHHH-hccCCHH-HHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDV-NCNGAISFRDLLVTLST-LLRGSIY-EKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 15 ~~~~~~~f~~~d~-~~~g~i~~~ef~~~~~~-~~~~~~~-~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
-..+...|..+|+ +++|.|+..||...+.. +....+. ..+..+++.+|.|++|.|+++||+..+..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3557789999999 99999999999999988 6544555 8899999999999999999999999998764
No 26
>KOG0034|consensus
Probab=99.10 E-value=2.3e-09 Score=72.37 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=89.1
Q ss_pred hHHHHHHHHhhccC-CCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCc-eeHHHHHHHHHHHHHHhcCCCCch
Q psy12168 15 NLYAHYVFKAFDVN-CNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGC-ISRSELTQIVQAVHELMGRKNQTD 92 (150)
Q Consensus 15 ~~~~~~~f~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~-I~~~e~~~~l~~~~~~~~~~~~~~ 92 (150)
.+.+...|.+++.+ ++|.|+.+||..+.... .+ -....+++.++.+++|. |++++|++.+..+.+...
T Consensus 32 I~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~------ 101 (187)
T KOG0034|consen 32 IERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LN---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS------ 101 (187)
T ss_pred HHHHHHHHHHhccccccCccCHHHHHHHHHHh-cC---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc------
Confidence 35577899999999 99999999999998332 22 23466778888888888 999999999987632211
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhh--------HHHHHHhHhhhhhcc
Q psy12168 93 AARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQ--------LEKSIESCLKVSTQN 146 (150)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~--------~~~~i~~~~~~~d~~ 146 (150)
.++.++-+|+.+|.+++|+|+.+|+..++...-.. +.+.++.++..+|.+
T Consensus 102 ----~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d 159 (187)
T KOG0034|consen 102 ----KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD 159 (187)
T ss_pred ----HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC
Confidence 13689999999999999999999999887665441 234466666666655
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.07 E-value=1.3e-09 Score=65.06 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhc-cCCCC-ceeHHHHHHHHHH-----hccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFD-VNCNG-AISFRDLLVTLST-----LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 15 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
-..+.++|..+| .+++| .|+..|+..+++. .....+++.+..+++.+|.+++|.|+++||+.++..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345788999998 79999 6999999999998 6666788889999999999999999999999988765
No 28
>KOG0377|consensus
Probab=99.05 E-value=4e-09 Score=78.31 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhcc-CCH--------------------------------------------
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR-GSI-------------------------------------------- 50 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~-------------------------------------------- 50 (150)
..+.+-|..+|....|+|+...|+.++..+.. +.+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 34677899999999999999999999866431 110
Q ss_pred --HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 51 --YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 51 --~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
...+..+|+..|.+.+|.|+.+||..++..++.++....+ ..++.++-+.+|.|+||.|++.||.+.+...
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~-------~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAIS-------DDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcC-------HHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 2346789999999999999999999999999887776533 5788999999999999999999999988765
Q ss_pred hh
Q psy12168 129 ST 130 (150)
Q Consensus 129 ~~ 130 (150)
..
T Consensus 617 dr 618 (631)
T KOG0377|consen 617 DR 618 (631)
T ss_pred cc
Confidence 53
No 29
>KOG4223|consensus
Probab=99.05 E-value=3.6e-09 Score=75.65 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=103.5
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHH---HhcCCC
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE---LMGRKN 89 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~---~~~~~~ 89 (150)
.+...+..++.++|.+++|.|+..|+..++....+......+..-|..+|.+.+|.|+++|........-- ......
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 35778889999999999999999999999988776667788888899999999999999999887764200 000111
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhh-HHH-HHHhHhhhhhcc
Q psy12168 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQ-LEK-SIESCLKVSTQN 146 (150)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~-~~~-~i~~~~~~~d~~ 146 (150)
.....+.....-..-|+..|.|++|.+|++||..++...... +.. -+.+.+.-+|+|
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn 212 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN 212 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC
Confidence 123344445667788999999999999999999999877643 333 478888888776
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.02 E-value=1.6e-09 Score=64.66 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=55.3
Q ss_pred HHHHHhhhhhc-cCCCC-ceeHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 52 EKLRWTFKLYD-INGDG-CISRSELTQIVQAVHEL-MGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 52 ~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
..+..+|+.+| .+++| .|+.+||+.+++.-.+. ++.. ..+..+..+++..|.|++|.|+++||..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~-------~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI-------KEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC-------CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46789999998 79999 59999999999971111 1211 125779999999999999999999999887544
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.01 E-value=2.9e-09 Score=64.30 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=55.7
Q ss_pred HHHHHhhhhhc-cCCCC-ceeHHHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 52 EKLRWTFKLYD-INGDG-CISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 52 ~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
..+..+|..|| .+++| .|+.+||+.++.. ++..+... .....+..+++.+|.|++|.|+++||..++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~-------~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQ-------KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccc-------cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45578899998 78998 5999999999976 33222221 124689999999999999999999999988765
Q ss_pred h
Q psy12168 129 S 129 (150)
Q Consensus 129 ~ 129 (150)
.
T Consensus 83 ~ 83 (93)
T cd05026 83 T 83 (93)
T ss_pred H
Confidence 4
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=3.7e-09 Score=63.99 Aligned_cols=75 Identities=31% Similarity=0.504 Sum_probs=59.4
Q ss_pred HHHHHHhhhhhcc-CC-CCceeHHHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 51 YEKLRWTFKLYDI-NG-DGCISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 51 ~~~~~~~f~~~d~-~~-~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
...+..+|..+|. ++ +|.|+.+|+..++.. ++..++.. .....+..+++.+|.+++|.|+++||..++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~-------~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ-------KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc-------ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3567889999997 87 699999999999986 43323321 12578999999999999999999999999987
Q ss_pred chhhH
Q psy12168 128 VSTQL 132 (150)
Q Consensus 128 ~~~~~ 132 (150)
.+-..
T Consensus 80 ~~~~~ 84 (94)
T cd05031 80 LSIAC 84 (94)
T ss_pred HHHHH
Confidence 76544
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.00 E-value=4.1e-09 Score=63.56 Aligned_cols=72 Identities=26% Similarity=0.476 Sum_probs=58.3
Q ss_pred HHHHHHhhhhhc-cCCCC-ceeHHHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 51 YEKLRWTFKLYD-INGDG-CISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 51 ~~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
.+.+..+|..+| .+++| .|+..|+..+++. ++..++.. .....+..+++.+|.+++|.|+++||..++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~-------~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ-------KDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC-------CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 356789999997 99999 5999999999985 65444321 12578999999999999999999999998865
Q ss_pred ch
Q psy12168 128 VS 129 (150)
Q Consensus 128 ~~ 129 (150)
..
T Consensus 81 ~~ 82 (92)
T cd05025 81 LT 82 (92)
T ss_pred HH
Confidence 44
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.99 E-value=3.9e-09 Score=63.75 Aligned_cols=68 Identities=15% Similarity=0.045 Sum_probs=57.0
Q ss_pred hHHHHHHHHhhc-cCCCC-ceeHHHHHHHHHHh-----ccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFD-VNCNG-AISFRDLLVTLSTL-----LRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 15 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~~~~~-----~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
-..+.++|+.+| .+++| +|+..|+...+... ........+..+++.+|.+++|.|+++||+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 345677899999 78998 69999999999663 2234667899999999999999999999999998773
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.98 E-value=5e-09 Score=63.17 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=58.7
Q ss_pred hHHHHHHHHhhc-cCCCC-ceeHHHHHHHHHH-hc----cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFD-VNCNG-AISFRDLLVTLST-LL----RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 15 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~~~~-~~----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
...+.+.|..+| .+++| .|+..|+..+++. +. ..++.+.+..+++.+|.+++|.|+++||+.++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456789999997 99999 5999999999975 32 235778999999999999999999999999988764
No 36
>KOG4223|consensus
Probab=98.98 E-value=3.1e-09 Score=75.92 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=91.7
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHHhccC-CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHH
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRG-SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKA 97 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 97 (150)
++-|+..|.|++|.++.+||..++.---.+ ...-.+.....-.|+|++|+|+++||+.-+...- + ..+.+..-..
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~---~-~~~epeWv~~ 241 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE---G-NEEEPEWVLT 241 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc---C-CCCCcccccc
Confidence 468999999999999999999998654322 4455678888899999999999999998876531 1 1112222222
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhcc
Q psy12168 98 KEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQN 146 (150)
Q Consensus 98 ~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~ 146 (150)
+. .+.+...|.|+||+++-+|+..++...+... ...+..++-.+|.|
T Consensus 242 Er--e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~d 289 (325)
T KOG4223|consen 242 ER--EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADED 289 (325)
T ss_pred cH--HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccC
Confidence 33 4788889999999999999999998888776 55577776666654
No 37
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.97 E-value=4.4e-09 Score=57.88 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=55.9
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 78 (150)
+..+|..+|.+++|.|++.+|..++.......+.+.+..+|..+|.+++|.|++++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999988878888999999999999999999999998754
No 38
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.97 E-value=4.5e-09 Score=63.65 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcc-CC-CCceeHHHHHHHHHH-----hccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDV-NC-NGAISFRDLLVTLST-----LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 16 ~~~~~~f~~~d~-~~-~g~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
..+...|..+|. ++ +|+|+..|+..++.. +....+.+.+..+++.+|.+++|.|+++||+.++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 457789999997 87 699999999999875 23456788999999999999999999999999988764
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.96 E-value=4e-09 Score=66.01 Aligned_cols=61 Identities=30% Similarity=0.470 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy12168 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 50 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~ 125 (150)
....+..+|..+|.|++|.|+.+|+..+. + .. .+..+..+|..+|.|++|.||++||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~~---------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----DP---------NEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----cc---------hHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 35778999999999999999999999765 1 11 15778899999999999999999999998
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.96 E-value=4.8e-09 Score=56.86 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=47.1
Q ss_pred CCCceeHHHHHHHHHHhccC-CHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 29 CNGAISFRDLLVTLSTLLRG-SIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
.+|.|+.++|..+++.++.. .+.+.+..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999777766 88899999999999999999999999998864
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=6.8e-09 Score=58.60 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=54.4
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
+.+|..+|++++|.|+..|+..++.... .+...+..+|..+|.+++|.|+++||+..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999998763 467789999999999999999999999988754
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.93 E-value=1.1e-08 Score=62.11 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 83 (150)
...+..+|..+|.+++|.|+..|+..+++.. +.+.+.+..++..+|.+++|.|+++||+.++..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999875 466788999999999999999999999999887644
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.90 E-value=5.9e-09 Score=58.87 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=53.0
Q ss_pred HHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 55 RWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 55 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
+.+|+.+|++++|.|+.+|+..++..++ . ..+.+..+++.+|.+++|.|+++||..++....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~---------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----L---------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----C---------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999999998652 1 146789999999999999999999999886544
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.90 E-value=1.1e-08 Score=61.16 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=57.4
Q ss_pred HHHHHHHhhcc-CC-CCceeHHHHHHHHHH---hccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDV-NC-NGAISFRDLLVTLST---LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 17 ~~~~~f~~~d~-~~-~g~i~~~ef~~~~~~---~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
.+=.+|+.++. ++ +|.|+..||...+.. .+...+.+.+..+++.+|.+++|.|+++||+.++..+.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 35578999998 67 899999999999964 45667889999999999999999999999999988763
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.88 E-value=1.4e-08 Score=60.64 Aligned_cols=70 Identities=26% Similarity=0.470 Sum_probs=56.4
Q ss_pred HHHHHhhhhhcc--CCCCceeHHHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 52 EKLRWTFKLYDI--NGDGCISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 52 ~~~~~~f~~~d~--~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
+.+..+|..+|. +++|.|+.+||..+++. ++...+.. .....+..++..+|.+++|.|++++|..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~-------~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQ-------KDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCC-------CCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 567889999999 89999999999999976 33222211 125678999999999999999999999988654
No 46
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.88 E-value=1.6e-08 Score=60.37 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhcc--CCCCceeHHHHHHHHHH-hccC----CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDV--NCNGAISFRDLLVTLST-LLRG----SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 15 ~~~~~~~f~~~d~--~~~g~i~~~ef~~~~~~-~~~~----~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
...+..+|..+|. +++|.|+..++..+++. .... .+.+.+..++..+|.+++|.|++++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3457788999999 89999999999999975 3322 3478899999999999999999999999988764
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.88 E-value=1.2e-08 Score=62.03 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=56.3
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
...+..+|..+|.+++|.|+.+|+..+++..+ . ..+.+..+++.+|.+++|.|+++||..++....
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~---------~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----L---------PQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----C---------CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 35678999999999999999999999998642 1 146788999999999999999999998876554
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.87 E-value=4e-09 Score=57.20 Aligned_cols=51 Identities=29% Similarity=0.602 Sum_probs=42.9
Q ss_pred CCceeHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 66 DGCISRSELTQIVQAVHEL-MGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 66 ~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
+|.|+.++|..++..++.. ++ ++.+..+|..+|.+++|.|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s-----------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLS-----------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSC-----------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCC-----------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6899999999999654322 22 577999999999999999999999998864
No 49
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.86 E-value=8.7e-09 Score=61.53 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=54.7
Q ss_pred HHHHHhhhhhcc-CC-CCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLYDI-NG-DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~d~-~~-~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
..+-.+|..|+. ++ +|.|+.+||..++.... .++.. .+.+.+..+++..|.+++|.|+++||..++....
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~-~lg~k-------~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKEL-TIGSK-------LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHH-hcCCC-------CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 345788999997 67 89999999999997420 12221 1257899999999999999999999998886554
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.85 E-value=1.6e-08 Score=63.36 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
...+...|..+|.|+||.|+..|+..+. ....+..+..+|..+|.|++|.||++||...+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3457889999999999999999999775 245567788999999999999999999999883
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.83 E-value=1.3e-08 Score=55.87 Aligned_cols=61 Identities=39% Similarity=0.686 Sum_probs=51.6
Q ss_pred HHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy12168 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 54 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~ 125 (150)
+..+|..+|.+++|.|+++++..++..++... ....+..+|+.+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL-----------SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-----------CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999998763211 15678889999999999999999998765
No 52
>KOG0030|consensus
Probab=98.82 E-value=1.3e-07 Score=59.95 Aligned_cols=106 Identities=16% Similarity=0.299 Sum_probs=84.8
Q ss_pred ccCCChhHHHHHHHHhhccC--CCCceeHHHHHHHHHHhcc---CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHH
Q psy12168 9 GVIRDSNLYAHYVFKAFDVN--CNGAISFRDLLVTLSTLLR---GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83 (150)
Q Consensus 9 ~~~~~~~~~~~~~f~~~d~~--~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 83 (150)
.+..+.+..+.+.....+++ +-.+|+|++|+..++.+.+ ..+-+.+-..++.+|++++|.|...|+.+++..+|+
T Consensus 40 lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 40 LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 34556667777777777766 3478999999999988763 355678888899999999999999999999999998
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 84 LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
.++ ++++..++.-. .|.+|.|.|+.|++.+.
T Consensus 120 kl~-----------eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 120 KLT-----------EEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred hcc-----------HHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 876 67777776543 45679999999998653
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.79 E-value=3.8e-08 Score=58.90 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=56.7
Q ss_pred hHHHHHHHHh-hccCCCC-ceeHHHHHHHHHHhc-----cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKA-FDVNCNG-AISFRDLLVTLSTLL-----RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 15 ~~~~~~~f~~-~d~~~~g-~i~~~ef~~~~~~~~-----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
-..+..+|.. .|.+++| +|+..||..++.... .......+..+++.+|.+++|.|+++||+..+..+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4556788999 7787876 999999999997753 234567899999999999999999999999988764
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.78 E-value=7.8e-08 Score=57.52 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=54.9
Q ss_pred HHHHHhhhh-hccCCCC-ceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKL-YDINGDG-CISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~-~d~~~~g-~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
..+..+|.. .|.+++| .|+.+||+..+....+..... ......+..+++.+|.|+||.|+++||..++....
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~------~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN------QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC------CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 456788888 6787876 999999999998753321111 01146788899999999999999999999886654
No 55
>PLN02964 phosphatidylserine decarboxylase
Probab=98.77 E-value=2.7e-08 Score=78.25 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=59.9
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
+++.+|..+|.+++|.|++.||..++..+....+++++..+|+.+|.+++|.|+.+||+.++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 5899999999999999999999999988776678889999999999999999999999999887
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=98.67 E-value=1.7e-07 Score=52.27 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=56.8
Q ss_pred HHHHhhccCCCCceeHHHHHHHHHHhcc-CCHHHHHHHhhhhhccCCC-CceeHHHHHHHHHH
Q psy12168 20 YVFKAFDVNCNGAISFRDLLVTLSTLLR-GSIYEKLRWTFKLYDINGD-GCISRSELTQIVQA 80 (150)
Q Consensus 20 ~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~-g~I~~~e~~~~l~~ 80 (150)
..|..+|.++.|.|...++..+++.... .+.+..++.+.+.+|+++. |.|+++.|..+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999886 8999999999999999988 99999999999875
No 57
>KOG0031|consensus
Probab=98.63 E-value=6e-07 Score=57.96 Aligned_cols=95 Identities=15% Similarity=0.295 Sum_probs=73.1
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCC---------CCc-------------hHHHHHHHHHHHHHHhc
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRK---------NQT-------------DAARKAKEQIDFVFRKL 108 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~---------~~~-------------~~~~~~~~~~~~~~~~~ 108 (150)
.++++.+|..+|.|+||.|..+++...+..+|+..... ..| ......++.+..+|+.|
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 47889999999999999999999999988764321100 000 00012267789999999
Q ss_pred CCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhc
Q psy12168 109 DLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQ 145 (150)
Q Consensus 109 d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~ 145 (150)
|.++.|.|..+.+..++...+... .+.+.++++..--
T Consensus 111 D~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~ 148 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI 148 (171)
T ss_pred CccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc
Confidence 999999999999999999999887 7789988876544
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=9.5e-08 Score=44.87 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLS 43 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~ 43 (150)
++++|+.+|+|+||+|+++||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34555555555555555555555553
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.59 E-value=7.8e-08 Score=45.18 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=25.5
Q ss_pred HHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 53 KLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 53 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
+++.+|+.+|+|++|.|+++||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999999875
No 60
>KOG4251|consensus
Probab=98.56 E-value=3.1e-07 Score=63.73 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhhccCCCCceeHHHHHHHHHHhc---cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH--------
Q psy12168 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL---RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH-------- 82 (150)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-------- 82 (150)
+...+..+|++.|.|.||+|+-.|+..++..-. .....+..+..|+..|++++|.|+++||.--+...-
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 346678899999999999999999999876533 123346678899999999999999999976543310
Q ss_pred -----------------------------------------HHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHH
Q psy12168 83 -----------------------------------------ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121 (150)
Q Consensus 83 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef 121 (150)
+......+..+.......++.+++.+|+|+|..+|..||
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 000011222333344566788888889999999999998
Q ss_pred HHHHH
Q psy12168 122 IESCL 126 (150)
Q Consensus 122 ~~~~~ 126 (150)
+....
T Consensus 259 islpv 263 (362)
T KOG4251|consen 259 ISLPV 263 (362)
T ss_pred hcCCC
Confidence 86543
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.55 E-value=5.6e-07 Score=53.75 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHHhhccC--CCCceeHHHHHHHHHH-hccCCH----HHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVN--CNGAISFRDLLVTLST-LLRGSI----YEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 16 ~~~~~~f~~~d~~--~~g~i~~~ef~~~~~~-~~~~~~----~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
..+-.+|..++.. .+|.|+..|+...+.. .....+ .+.+..+|+.+|.+++|.|+++||+..+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4456789999865 3789999999999974 333344 78999999999999999999999999988763
No 62
>KOG2643|consensus
Probab=98.53 E-value=2.2e-07 Score=69.12 Aligned_cols=105 Identities=21% Similarity=0.399 Sum_probs=67.6
Q ss_pred ccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHH--HhcC--C--CCchHHHHHHH
Q psy12168 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE--LMGR--K--NQTDAARKAKE 99 (150)
Q Consensus 26 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~--~~~~--~--~~~~~~~~~~~ 99 (150)
+.+.+|.|+|.||+-.+..+ ..+...+..+|+.+|.||+|.|+.+||..+..-... .++. . .++......+-
T Consensus 209 ~lg~~GLIsfSdYiFLlTlL--S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLL--SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHH--ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 44567999999998887666 566778899999999999999999999988754210 0000 0 00000000011
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH
Q psy12168 100 QIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 100 ~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~ 132 (150)
.-.....-|..++++.+++++|.+++..+...+
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Ei 319 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENLQEEI 319 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHHHHHH
Confidence 111234456777777777777777776666544
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.40 E-value=2.2e-06 Score=51.21 Aligned_cols=70 Identities=29% Similarity=0.553 Sum_probs=53.0
Q ss_pred HHHHHhhhhhccC--CCCceeHHHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 52 EKLRWTFKLYDIN--GDGCISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 52 ~~~~~~f~~~d~~--~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
..+-..|..|+.. .+|.|+.+||..++.. ++..+... .....+..+|+.+|.+++|.|+++||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~-------~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKE-------KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccC-------CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456778888755 4789999999999974 33322100 115789999999999999999999999988654
No 64
>KOG0041|consensus
Probab=98.33 E-value=3.1e-06 Score=57.09 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=53.8
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.+....+|+.||.+.||+|++.|++..+..+|.. ++.--++.+++.+|-|.+|.||+-||.-.+....
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-----------QTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-----------QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCc-----------hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 3667888999999999999999999888887533 3356678888899999999999999886665443
No 65
>PF14658 EF-hand_9: EF-hand domain
Probab=98.32 E-value=2.1e-06 Score=47.88 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=52.7
Q ss_pred HhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHc
Q psy12168 56 WTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD-GVVTLEEFIESCLK 127 (150)
Q Consensus 56 ~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~is~~ef~~~~~~ 127 (150)
.+|..||.++.|.|....++.+++..+ ...++ +..+..+....|+++. |.|+++.|...|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~----~~~p~------e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT----GRSPE------ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc----CCCCc------HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999863 31222 5789999999999998 99999999998864
No 66
>KOG0751|consensus
Probab=98.31 E-value=7.5e-06 Score=62.15 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHh----------
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM---------- 85 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~---------- 85 (150)
..++-+=...|...||.|+|+||+.+-..+ +.++.....+|..+|..++|.++++++..++.....+-
T Consensus 74 ~~v~Lla~iaD~tKDglisf~eF~afe~~l--C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ef 151 (694)
T KOG0751|consen 74 KIVRLLASIADQTKDGLISFQEFRAFESVL--CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEF 151 (694)
T ss_pred HHHHHHHhhhhhcccccccHHHHHHHHhhc--cCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcch
Confidence 344444556678889999999998774433 45578889999999999999999999999987631100
Q ss_pred -----c----CC-----CCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhh
Q psy12168 86 -----G----RK-----NQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVS 143 (150)
Q Consensus 86 -----~----~~-----~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~ 143 (150)
+ .. ..+..-+-.++...+.|+.-|..++|.||.-+|...+...-..+ ..-+++.+-.+
T Consensus 152 I~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~v 224 (694)
T KOG0751|consen 152 IKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSV 224 (694)
T ss_pred HHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhh
Confidence 0 00 11223334567788999999999999999999999998877666 33455555443
No 67
>KOG2562|consensus
Probab=98.28 E-value=4.4e-06 Score=62.74 Aligned_cols=108 Identities=18% Similarity=0.303 Sum_probs=84.4
Q ss_pred hhHHHHHHHH----hhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCC
Q psy12168 14 SNLYAHYVFK----AFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKN 89 (150)
Q Consensus 14 ~~~~~~~~f~----~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~ 89 (150)
....++++|+ ..-...+|++++++|..++.......+...++..|+.+|.+++|.|+..|+..........+....
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~ 388 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMG 388 (493)
T ss_pred hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 3567899999 344556899999999999988777777889999999999999999999998887776543322211
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy12168 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123 (150)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 123 (150)
+. .-..+....+++..+-+...+.||+.+|..
T Consensus 389 ~e--~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 389 QE--ALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CC--cccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 11 112267788899999999999999999987
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.25 E-value=2.5e-06 Score=63.98 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 11 IRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
...-...+..+|..+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...++...
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 334456788999999999999999999942 46789999999999999999999988653
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.21 E-value=9.9e-06 Score=42.72 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred ceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 32 AISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 32 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
++++.|....++.+.-...+.-+..+|+.+|++++|.+..+||+..++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999998888889999999999999999999999999988754
No 70
>KOG4666|consensus
Probab=98.20 E-value=3.6e-06 Score=60.71 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=87.5
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
-.+..+|..+|.+++|.+++.|....+..+. .......++.+|+.|+..-||.++-.+|--.++.. ++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~---lgv~------ 329 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV---LGVE------ 329 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh---cCcc------
Confidence 4567899999999999999999999987765 44678899999999999999999998887776653 2221
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~ 132 (150)
.-.+..+|...+...+|.|++.+|.+++...+...
T Consensus 330 ---~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 330 ---VLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred ---eeeccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 34567799999999999999999999999888644
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.18 E-value=3.4e-06 Score=38.13 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=12.8
Q ss_pred HHHHHhhccCCCCceeHHHHHH
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLV 40 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~ 40 (150)
+..|..+|.|+||.|+++||..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3455666666666666666554
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.17 E-value=2.5e-06 Score=40.65 Aligned_cols=25 Identities=44% Similarity=0.760 Sum_probs=12.0
Q ss_pred HHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 55 RWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 55 ~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
+.+|+.+|.+++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4445555555555555555554444
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=1.6e-05 Score=59.75 Aligned_cols=56 Identities=39% Similarity=0.564 Sum_probs=48.2
Q ss_pred CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 48 GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 48 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
....+.+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG------------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34467789999999999999999999942 255899999999999999999998754
No 74
>KOG2643|consensus
Probab=98.13 E-value=3.9e-05 Score=57.48 Aligned_cols=96 Identities=20% Similarity=0.364 Sum_probs=74.2
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHHhccCCH---------------HHHHHHh--hhhhccCCCCceeHHHHHHHHHHH
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSI---------------YEKLRWT--FKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~---------------~~~~~~~--f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
+-.|..+|.|+||-|+.+||....+....... ...+... -..+.+++++.++.+||.+.+..+
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 44688999999999999999888755432111 1122222 234689999999999999999887
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
. ++....=|..+|....|.|+-.+|..++....
T Consensus 316 q---------------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 316 Q---------------EEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred H---------------HHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 2 57777889999999999999999999887766
No 75
>KOG0041|consensus
Probab=98.13 E-value=3.8e-05 Score=51.92 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=76.4
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAAR 95 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 95 (150)
..+..+|..+|.+.||.|++.|+.-.|..++.+-+---++.+.+.+|.|.+|+|++.||.-.++.... +.. +.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa--gEL-~~---- 171 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA--GEL-QE---- 171 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc--ccc-cc----
Confidence 45678999999999999999999999999887777778899999999999999999999988776421 111 10
Q ss_pred HHHHHHHHHHHh--cCCCCCCcccHHHHHH
Q psy12168 96 KAKEQIDFVFRK--LDLNDDGVVTLEEFIE 123 (150)
Q Consensus 96 ~~~~~~~~~~~~--~d~~~~g~is~~ef~~ 123 (150)
......+-+. +|....|..-...|-.
T Consensus 172 --ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 172 --DSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred --chHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 1233334444 7888888888777654
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.12 E-value=3.8e-06 Score=37.97 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHH
Q psy12168 102 DFVFRKLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 102 ~~~~~~~d~~~~g~is~~ef~~~~ 125 (150)
..+|+.+|.|++|.||.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568999999999999999999864
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.09 E-value=4.7e-06 Score=39.67 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 101 IDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 101 ~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
+..+|+.+|.+++|.|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57799999999999999999999997
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.04 E-value=6.8e-05 Score=46.08 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
......+|...+. ++|.|+-.+...++... +.+.+.+..+|...|.+++|.++++||+-++.-+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4556789999985 58999999999877654 6777999999999999999999999999888765
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.03 E-value=6.1e-05 Score=44.94 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhc-----cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLL-----RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 82 (150)
.+=.+|..+. ...++++..||...+..-. ....+..+..+++.+|.|+||.|+|+||+..+..+.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3456888887 3467999999999986532 234567899999999999999999999999998774
No 80
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.03 E-value=7.5e-05 Score=44.55 Aligned_cols=70 Identities=20% Similarity=0.390 Sum_probs=52.5
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHE-LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
..+..+|..|. ...+.++..||+..+..-.+ .++.... ...+..+|+..|.|+||.|++.||..++....
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d-------~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQND-------PMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCC-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34566777776 34568999999999976432 2332211 46789999999999999999999999887665
No 81
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.00 E-value=1.7e-06 Score=54.08 Aligned_cols=64 Identities=28% Similarity=0.486 Sum_probs=46.6
Q ss_pred CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy12168 48 GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIES 124 (150)
Q Consensus 48 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 124 (150)
......+...|..+|.|++|.|+..|+..+...+ .. .+..+...++.+|.|+||.||+.||..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l----~~---------~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL----MP---------PEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----ST---------TGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----hh---------hHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4456788999999999999999999998765432 11 1467888999999999999999999763
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.99 E-value=2.1e-05 Score=41.51 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=38.8
Q ss_pred ceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 68 CISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 68 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
++++.|++..++.+.--+ -++++..+|+.+|.+++|++..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~-----------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM-----------DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT---------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc-----------CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 368899999998763222 2689999999999999999999999998864
No 83
>KOG4251|consensus
Probab=97.96 E-value=4.1e-05 Score=53.41 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=84.3
Q ss_pred HHHHhhccCCCCceeH---------HHHHHHHHHh-ccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCC
Q psy12168 20 YVFKAFDVNCNGAISF---------RDLLVTLSTL-LRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKN 89 (150)
Q Consensus 20 ~~f~~~d~~~~g~i~~---------~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~ 89 (150)
+.|..-+++..++.+- +||..++..- ..+.-...++.+...+|.+++..++..||++..-..-.. ...
T Consensus 194 qevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVen--qqg 271 (362)
T KOG4251|consen 194 QEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVEN--QQG 271 (362)
T ss_pred HHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhh--hhc
Confidence 3455555566666555 8998887653 345666788999999999999999999999864321100 011
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhc
Q psy12168 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQ 145 (150)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~ 145 (150)
+.......++..++.=...|.|+||.+|.+|+..++....+.. .+.+..++...|.
T Consensus 272 qdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~ 328 (362)
T KOG4251|consen 272 QDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDA 328 (362)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhcc
Confidence 2222333345556666678999999999999999987777665 6666666655554
No 84
>KOG0377|consensus
Probab=97.91 E-value=5e-05 Score=57.10 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhcc----CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLR----GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
.+..+|+.+|.+.+|.|+.+||..++..+.. ..+...+..+-+..|.|+||.|++.||..+++..
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4677999999999999999999999877652 3556788888899999999999999999998754
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.78 E-value=1.1e-05 Score=50.46 Aligned_cols=60 Identities=27% Similarity=0.262 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~ 76 (150)
...+...|..+|.|+||.|+..|+..+...+ ...+.=+...++.+|.|+||.|+..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4567889999999999999999998876544 33344467889999999999999999875
No 86
>KOG0040|consensus
Probab=97.66 E-value=0.00024 Score=60.48 Aligned_cols=98 Identities=24% Similarity=0.317 Sum_probs=75.6
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccCC--H-----HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCC
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGS--I-----YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQ 90 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~--~-----~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~ 90 (150)
..-+|..||.+.+|.+++++|..|++..+... - +..++.+...+|++.+|+|+..+++.++-.- ...
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~------ETe 2328 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK------ETE 2328 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc------ccc
Confidence 45689999999999999999999999987432 2 3489999999999999999999999987642 101
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy12168 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~ 125 (150)
.. ...+.+..+|+..|. +.-+|+..+....|
T Consensus 2329 NI---~s~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2329 NI---LSSEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred cc---cchHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 00 012477889999988 66788888875443
No 87
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.65 E-value=0.00042 Score=42.57 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 50 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
..+....+|..++. ++|.|+.++.+.++... + ...+.+..++...|.+++|+++.+||.-+|....
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~---------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----G---------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----T---------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----C---------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 34667888998885 68999999999988753 1 1157899999999999999999999998886654
Q ss_pred h
Q psy12168 130 T 130 (150)
Q Consensus 130 ~ 130 (150)
.
T Consensus 74 ~ 74 (104)
T PF12763_consen 74 R 74 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>KOG0040|consensus
Probab=97.62 E-value=0.00016 Score=61.50 Aligned_cols=90 Identities=14% Similarity=0.324 Sum_probs=69.9
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh-
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST- 130 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~- 130 (150)
..+..+|+-||.+.+|.++..+|..+++.+|-.+. -.....-+-....++...|++.+|+|+..+++++|.....
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lp----mvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLP----MVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCc----ccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 35678999999999999999999999998753331 1111111236788999999999999999999999987663
Q ss_pred hH--HHHHHhHhhhhhc
Q psy12168 131 QL--EKSIESCLKVSTQ 145 (150)
Q Consensus 131 ~~--~~~i~~~~~~~d~ 145 (150)
.+ +..|+..|+.++.
T Consensus 2329 NI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2329 NILSSEEIEDAFRALDA 2345 (2399)
T ss_pred cccchHHHHHHHHHhhc
Confidence 23 5679999988876
No 89
>KOG4065|consensus
Probab=97.56 E-value=0.00047 Score=42.61 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=54.3
Q ss_pred HhhhhhccCCCCceeHHHHHHHHHHHHH--HhcC-CCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy12168 56 WTFKLYDINGDGCISRSELTQIVQAVHE--LMGR-KNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIES 124 (150)
Q Consensus 56 ~~f~~~d~~~~g~I~~~e~~~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 124 (150)
-.|+..|.++++.|+-=|+..++...-. ..++ ..+-.+....++.+..+++.-|.|+||+|+|-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4678889999999999999998887643 2233 2333555667788999999999999999999999864
No 90
>KOG0038|consensus
Probab=97.45 E-value=0.00048 Score=44.45 Aligned_cols=87 Identities=11% Similarity=0.285 Sum_probs=62.7
Q ss_pred CceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCC
Q psy12168 31 GAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDL 110 (150)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 110 (150)
-++.++.... +-.+..++..+.+..+ +..+|.|.+++++|..++.-+.+...+ .-.+..+|+.+|.
T Consensus 54 v~vp~e~i~k-MPELkenpfk~ri~e~---FSeDG~GnlsfddFlDmfSV~sE~APr----------dlK~~YAFkIYDf 119 (189)
T KOG0038|consen 54 VKVPFELIEK-MPELKENPFKRRICEV---FSEDGRGNLSFDDFLDMFSVFSEMAPR----------DLKAKYAFKIYDF 119 (189)
T ss_pred eeecHHHHhh-ChhhhcChHHHHHHHH---hccCCCCcccHHHHHHHHHHHHhhChH----------HhhhhheeEEeec
Confidence 3455554433 3344455555555555 456999999999999998877544321 3567889999999
Q ss_pred CCCCcccHHHHHHHHHcchhh
Q psy12168 111 NDDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 111 ~~~g~is~~ef~~~~~~~~~~ 131 (150)
|+|+.|--+++..++......
T Consensus 120 d~D~~i~~~DL~~~l~~lTr~ 140 (189)
T KOG0038|consen 120 DGDEFIGHDDLEKTLTSLTRD 140 (189)
T ss_pred CCCCcccHHHHHHHHHHHhhc
Confidence 999999999999988776533
No 91
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.31 E-value=0.0058 Score=40.68 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=74.6
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCC----------------------------------------------
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGS---------------------------------------------- 49 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~---------------------------------------------- 49 (150)
-.+++-..-+|+|+||.|.+.|=-..++.++.+.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3567778889999999999998777766664321
Q ss_pred -------HHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHH
Q psy12168 50 -------IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122 (150)
Q Consensus 50 -------~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~ 122 (150)
..++++.+|..++..+.+.++..|+..+++.- ....++...-...-++..++... .+.+|.++.++.+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n----r~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR 161 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN----RNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIR 161 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc----cccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHh
Confidence 15789999999999888999999999998762 01122222222234444455443 5568999999988
Q ss_pred HHHH
Q psy12168 123 ESCL 126 (150)
Q Consensus 123 ~~~~ 126 (150)
.++.
T Consensus 162 ~vYD 165 (174)
T PF05042_consen 162 GVYD 165 (174)
T ss_pred hhcc
Confidence 7763
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.23 E-value=0.00073 Score=30.33 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=17.2
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLS 43 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~ 43 (150)
++.+|..+|.+++|.|++.+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566677777777777777766654
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.16 E-value=0.00061 Score=30.62 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 101 IDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 101 ~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
+..+|..+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 466899999999999999999998764
No 94
>KOG2562|consensus
Probab=97.14 E-value=0.0016 Score=49.44 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=71.9
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhh----hhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFK----LYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~----~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
-..|-.+|++.+|.|+.+++...-.. ..+...+..+|. ..=...+|.+++++|+..+-++- ++.
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e---~k~------ 348 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE---DKD------ 348 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc---cCC------
Confidence 34477789999999999998766432 344566777887 33455788999999999887652 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
+..-+...|+..|.+++|.|+..|+..++...-
T Consensus 349 --t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 349 --TPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred --CccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 135678899999999999999999886665443
No 95
>KOG0169|consensus
Probab=97.09 E-value=0.0042 Score=49.86 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=83.0
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
...+..+|...|++.+|.+++.+...++...........+...|+..+..+++.+..++++.....+..
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~----------- 203 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK----------- 203 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc-----------
Confidence 456788999999999999999999999988877888889999999999999999999999998776521
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 95 RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 95 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.-.+..+|..+-.+ .+.++.+++..++....
T Consensus 204 ---rpev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 204 ---RPEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred ---CchHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 12566667666555 78899999888887764
No 96
>KOG4347|consensus
Probab=96.99 E-value=0.0045 Score=48.87 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=57.0
Q ss_pred ccccccCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHH
Q psy12168 5 TSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSEL 74 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~ 74 (150)
|....|-..+..++.++|...|.+++|.|+|.++..++..+..+...+.+..+|+.+|++++ ....++.
T Consensus 544 f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 544 FRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred hhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33444444556778899999999999999999999999888777788899999999999998 8888777
No 97
>KOG0751|consensus
Probab=96.92 E-value=0.0074 Score=46.48 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHHHHh---hccCCCCceeHHHHHHHHHHhc--cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCc
Q psy12168 17 YAHYVFKA---FDVNCNGAISFRDLLVTLSTLL--RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQT 91 (150)
Q Consensus 17 ~~~~~f~~---~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 91 (150)
.++.+|-. .+.++....+.++|......+. ....+..++..=...|...||.|+++||+.. ..+. ..+
T Consensus 34 eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~af-e~~l--C~p---- 106 (694)
T KOG0751|consen 34 ELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAF-ESVL--CAP---- 106 (694)
T ss_pred HHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHH-Hhhc--cCc----
Confidence 34444443 5667777899999998865544 2344555666666678889999999999864 3321 111
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
......+|..||..++|.+|.+++.+.+.....
T Consensus 107 ------Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 107 ------DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred ------hHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 355677999999999999999999999877654
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.83 E-value=0.0062 Score=35.66 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccC--CHHHHHHHhhhhhccC----CCCceeHHHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRG--SIYEKLRWTFKLYDIN----GDGCISRSELTQIVQA 80 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~d~~----~~g~I~~~e~~~~l~~ 80 (150)
+..+|..+.. +.+.|+.++|..++...... .+...+..++..+.++ ..+.++.++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6789999965 67899999999999886633 5688899999998655 4789999999999853
No 99
>KOG0046|consensus
Probab=96.80 E-value=0.0055 Score=47.35 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=54.7
Q ss_pred HHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 53 KLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 53 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
.++..|...| +++|+|+..++..++.......+ ...+++++.++...+.|.+|.|++++|...+.....
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g--------~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLG--------YFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhccccc--------chhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 4567788888 99999999999999887643322 234688999999999999999999999997655543
No 100
>KOG1029|consensus
Probab=96.72 E-value=0.0062 Score=49.17 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=50.6
Q ss_pred HHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 53 KLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 53 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
+...+|+.+|+...|+++-..-..+|...+ .+ ...+..++..-|.|+||.++.+||.-.|....
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~------Lp-------q~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG------LP-------QNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC------Cc-------hhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 346889999999999999888877776421 11 35778899999999999999999997766544
No 101
>KOG3555|consensus
Probab=96.58 E-value=0.0056 Score=44.96 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=72.7
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhcc---CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLR---GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDA 93 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 93 (150)
.+...|..+-.++++...-......-..+.. ++=...+..+|..+|.|.|+.++..|+..+-. ...
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l------dkn----- 280 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL------DKN----- 280 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc------cCc-----
Confidence 3455566554444444433333333222211 23357889999999999999999999987643 222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHHHHH
Q psy12168 94 ARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSI 136 (150)
Q Consensus 94 ~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~~~i 136 (150)
+..++..|...|...||.||-.||..++....+.-....
T Consensus 281 ----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc~~e~ 319 (434)
T KOG3555|consen 281 ----EACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPCQAEL 319 (434)
T ss_pred ----hhHHHHHHhhhcccccCccccchhhhhhccCCCccccHH
Confidence 678999999999999999999999999988775433333
No 102
>KOG0046|consensus
Probab=96.34 E-value=0.023 Score=44.11 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccC---CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG---SIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
..+..-|...| +++|+|+..++...+...... ...+.++.+....+.+.+|.|++++|+..+-.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34677899999 999999999999998876532 346889999999999999999999999976654
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.17 E-value=0.0086 Score=35.05 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=50.8
Q ss_pred HHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCC----CCCcccHHHHHHHHHcc
Q psy12168 53 KLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN----DDGVVTLEEFIESCLKV 128 (150)
Q Consensus 53 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~~~~~ 128 (150)
++..+|..+-. +.+.++.++|...+..-.... ....+.+..++..+.++ ..+.+|+++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~---------~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEP---------RLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-T---------TSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccc---------cCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36788999955 788999999999997642111 11357778888887554 47899999999999776
Q ss_pred hhh
Q psy12168 129 STQ 131 (150)
Q Consensus 129 ~~~ 131 (150)
...
T Consensus 71 ~N~ 73 (83)
T PF09279_consen 71 ENS 73 (83)
T ss_dssp TCB
T ss_pred cCC
Confidence 543
No 104
>KOG4578|consensus
Probab=96.14 E-value=0.0035 Score=45.74 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=52.9
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
..+...|..+|+|.++.|...|++..=..+. ...+ .....+.+++..|.|+|-.||++||..++.....
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~-k~s~---------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLL-KKSK---------PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHH-hhcc---------HHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 3678899999999999999998665322221 1111 2578889999999999999999999998866543
No 105
>KOG4578|consensus
Probab=96.12 E-value=0.0065 Score=44.37 Aligned_cols=65 Identities=28% Similarity=0.280 Sum_probs=55.3
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhcc-CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR-GSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
..++.-|..+|+|.++.|+..|+..+-+.+.+ ....+=.+.+|+.+|.|+|..|+++|+...+..
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 35677899999999999999999888766553 455667899999999999999999999998764
No 106
>KOG4065|consensus
Probab=95.49 E-value=0.053 Score=33.75 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHhhccCCCCceeHHHHHHHHHHhcc----------CCHHHHH----HHhhhhhccCCCCceeHHHHHHH
Q psy12168 20 YVFKAFDVNCNGAISFRDLLVTLSTLLR----------GSIYEKL----RWTFKLYDINGDGCISRSELTQI 77 (150)
Q Consensus 20 ~~f~~~d~~~~g~i~~~ef~~~~~~~~~----------~~~~~~~----~~~f~~~d~~~~g~I~~~e~~~~ 77 (150)
-.|+..|-++++.|+--|+..++.-+.. .+++.++ -.+.+.-|.|+||.|++-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4788899999999999999999865432 1234444 44556668999999999999764
No 107
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.48 E-value=0.18 Score=30.10 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=42.6
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRK--NQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
++.+.+|+.+ .|.+|.++...|-..+.+.......- .+.... ++..++.+|... ...-.|+.++|..++...|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 4566777777 46667777777777766653322211 111111 567788888887 3556899999999999887
Q ss_pred hhH
Q psy12168 130 TQL 132 (150)
Q Consensus 130 ~~~ 132 (150)
..+
T Consensus 78 q~l 80 (90)
T PF09069_consen 78 QSL 80 (90)
T ss_dssp TTT
T ss_pred Cee
Confidence 653
No 108
>KOG4347|consensus
Probab=95.47 E-value=0.048 Score=43.33 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=57.0
Q ss_pred eeHHHHHHHHHHhccC-CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCC
Q psy12168 33 ISFRDLLVTLSTLLRG-SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111 (150)
Q Consensus 33 i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 111 (150)
|++..|+...+..... .+..-+..+|+.+|.+.+|.|++.++++.+..+- . ....+.++.+|+.+|++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~--~---------~~~~ek~~l~y~lh~~p 603 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK--A---------GDALEKLKLLYKLHDPP 603 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH--h---------hhHHHHHHHHHhhccCC
Confidence 4445555554443322 3445678999999999999999999999988762 1 13357889999999999
Q ss_pred CCCcccHHHH
Q psy12168 112 DDGVVTLEEF 121 (150)
Q Consensus 112 ~~g~is~~ef 121 (150)
.+ ..+.++.
T Consensus 604 ~~-~~d~e~~ 612 (671)
T KOG4347|consen 604 AD-ELDREEV 612 (671)
T ss_pred cc-ccccccc
Confidence 98 8888876
No 109
>KOG3866|consensus
Probab=95.44 E-value=0.03 Score=40.75 Aligned_cols=72 Identities=31% Similarity=0.449 Sum_probs=40.8
Q ss_pred HHhhhhhccCCCCceeHHHHHHHHHHHHHHhcC-CCC-chHHHHHH---HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 55 RWTFKLYDINGDGCISRSELTQIVQAVHELMGR-KNQ-TDAARKAK---EQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 55 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~-~~~-~~~~~~~~---~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
+..|..+|.|+||.++-.|+...+..-.+.+-. .+. ....++.+ +--..+++.+|+|.|.-||++||...-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 456666677777777766666665543221111 111 11111111 2335578888999999999999886543
No 110
>KOG1029|consensus
Probab=94.93 E-value=0.051 Score=44.20 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=54.8
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
.....+..+|+.+|+...|.++-..=..++... +.+...+-.+|..-|.|+||.++.+||.-.+..
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 335667899999999999999988877776443 566778889999999999999999999876554
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=94.85 E-value=0.49 Score=38.02 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCCceeHHHHHHHHHHhc--cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q psy12168 29 CNGAISFRDLLVTLSTLL--RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFR 106 (150)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (150)
+.|.++|++|..+.+.+. ...+..++..+|..+-.+ .+.++.++|...+...... ...........+..++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e-----~~~~~~~~~~i~~~~~~ 86 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDE-----LDCTLAEAQRIVEEVIN 86 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCC-----cCCCHHHHHHHHHHHHh
Confidence 358999999998887764 234678999999999644 4689999999999875211 11111111222222232
Q ss_pred hcC---CCCCCcccHHHHHHHHHc
Q psy12168 107 KLD---LNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 107 ~~d---~~~~g~is~~ef~~~~~~ 127 (150)
... ....+.++++.|..++..
T Consensus 87 ~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 87 RRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hccccccccccCcCHHHHHHHHcC
Confidence 221 123356999999999974
No 112
>KOG3555|consensus
Probab=94.43 E-value=0.058 Score=39.84 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
-.+..||+.+|.|.|+.++..|+..+-. .-.+.=++.+|+.+|...||.|+-.|+...+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4567899999999999999999977643 233566889999999999999999999988754
No 113
>KOG1955|consensus
Probab=93.91 E-value=0.13 Score=39.91 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 11 IRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
+...++|+-.-|..+-.+-+|.|+-.-=..++.+- .....++.-+|...|.++||.+++.||+.++-.
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34446777788888888999998876655555432 455688999999999999999999999998765
No 114
>KOG4666|consensus
Probab=93.74 E-value=0.08 Score=38.91 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
...+..+|..||.+++|.+++.|.+..+.-+ .+.. .+...+..+|+.|+.+.||.+.-.+|.-.++..-
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavl---c~p~-------~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVL---CGPP-------VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL 326 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheee---eCCC-------CcHHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 3678899999999999999999988776644 2222 2368899999999999999999988887776543
No 115
>KOG0169|consensus
Probab=93.37 E-value=0.96 Score=36.99 Aligned_cols=104 Identities=13% Similarity=0.268 Sum_probs=73.4
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHH
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAA 94 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 94 (150)
..++..+|...+..+++++...++..+.......+ .+..+|..+-.+ .+.++.+++...+......-+
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~-------- 238 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDG-------- 238 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccc--------
Confidence 45677888888888899999999999876664333 777777777554 789999999999887521111
Q ss_pred HHHHHHHHHHHHhc----CCCCCCcccHHHHHHHHHcchhh
Q psy12168 95 RKAKEQIDFVFRKL----DLNDDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 95 ~~~~~~~~~~~~~~----d~~~~g~is~~ef~~~~~~~~~~ 131 (150)
...+.+.++.+.+ .....+.++++.|..++....-.
T Consensus 239 -~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~ 278 (746)
T KOG0169|consen 239 -ATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCN 278 (746)
T ss_pred -ccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCC
Confidence 1234444444444 23456779999999999776543
No 116
>KOG1955|consensus
Probab=92.92 E-value=0.19 Score=39.02 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=47.9
Q ss_pred HHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q psy12168 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127 (150)
Q Consensus 54 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~ 127 (150)
...-|+.+..|-.|.|+-..-+..+.+- +.-.+++..|++..|.+.||.+++.||++.+..
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKS-------------klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKS-------------KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhc-------------cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3455777888889999887777666542 112478899999999999999999999998864
No 117
>KOG0039|consensus
Probab=92.56 E-value=0.51 Score=38.38 Aligned_cols=92 Identities=25% Similarity=0.400 Sum_probs=72.6
Q ss_pred CCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcC
Q psy12168 30 NGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109 (150)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 109 (150)
+| |+++|+. ...+..+..++..|..+|. ++|.++.+++..++........ .....+.+.+....++...|
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 71 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW---LSLIKKQTEEYAALIMEELD 71 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh---hhhhhhhhhHHHHHhhhhcc
Confidence 56 8899988 4456778999999999998 8999999999998877543322 23334556788889999999
Q ss_pred CCCCCcccHHHHHHHHHcchhh
Q psy12168 110 LNDDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 110 ~~~~g~is~~ef~~~~~~~~~~ 131 (150)
.++.|.+..+++.-++...+..
T Consensus 72 ~~~~~y~~~~~~~~ll~~~~~~ 93 (646)
T KOG0039|consen 72 PDHKGYITNEDLEILLLQIPTL 93 (646)
T ss_pred ccccceeeecchhHHHHhchHH
Confidence 9999999999998888766643
No 118
>KOG1707|consensus
Probab=92.23 E-value=2 Score=34.33 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=68.5
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHH-hccCCHHHHHHHhhhhhccC-----CCCceeHHHHHHHHHHHHHH-----
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDIN-----GDGCISRSELTQIVQAVHEL----- 84 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~~~~~~~f~~~d~~-----~~g~I~~~e~~~~l~~~~~~----- 84 (150)
..+.++|...|.|.||.++=.|+-.+=.. +..+...+.+..+-...+.. .++.++..-|.-+.....+.
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 45678999999999999999998766332 33344333333333332222 22234444444332221110
Q ss_pred --------------------hc----CC--CCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 85 --------------------MG----RK--NQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 85 --------------------~~----~~--~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
+. .. -.....+..-+-+..+|..+|.|+||.++-.|+..++...|.
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 00 00 011222334567889999999999999999999999988774
No 119
>KOG2243|consensus
Probab=90.84 E-value=0.48 Score=41.63 Aligned_cols=65 Identities=22% Similarity=0.496 Sum_probs=49.6
Q ss_pred HhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH
Q psy12168 56 WTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 56 ~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~ 132 (150)
..|+.+|++|.|.|+..+|..++...-.. +..++.-++.....|.+...+|++|++-+.+..-.+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y------------tqse~dfllscae~dend~~~y~dfv~rfhepakdi 4125 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY------------TQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDI 4125 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc------------hhHHHHHHHHhhccCccccccHHHHHHHhcCchhhc
Confidence 46788999999999999999998753111 134566677777888899999999998886654433
No 120
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.78 E-value=2.9 Score=26.62 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=64.2
Q ss_pred HHHHhhccCCCCceeHHHHHHHHHHh--c-----cCCHHHHHHHhhhhhccCC--CCceeHHHHHHHHHHHHHHhcCCCC
Q psy12168 20 YVFKAFDVNCNGAISFRDLLVTLSTL--L-----RGSIYEKLRWTFKLYDING--DGCISRSELTQIVQAVHELMGRKNQ 90 (150)
Q Consensus 20 ~~f~~~d~~~~g~i~~~ef~~~~~~~--~-----~~~~~~~~~~~f~~~d~~~--~g~I~~~e~~~~l~~~~~~~~~~~~ 90 (150)
++|..+. .=+.|-|.-|..+++.. . ....-..+..+|+....++ +..|+..++..++..+...+....+
T Consensus 4 ~l~~~l~--~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p 81 (127)
T PF09068_consen 4 ELMQELQ--DFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLP 81 (127)
T ss_dssp HHHHHGG--GGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHH--HHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4555551 22347788888886432 1 2244566778888876553 5779999999999887643332211
Q ss_pred c---h----HHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 91 T---D----AARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 91 ~---~----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
. . -....+-.++.++..+|++..|.|+.-.|...+.
T Consensus 82 ~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 82 TLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp TS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 1 1 1356667788999999999999999999987664
No 121
>KOG0035|consensus
Probab=89.69 E-value=3.9 Score=34.44 Aligned_cols=96 Identities=18% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCH--HHHHHHhhhh---hccCCCCceeHHHHHHHHHHHHHHhcCCCCc
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSI--YEKLRWTFKL---YDINGDGCISRSELTQIVQAVHELMGRKNQT 91 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~f~~---~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 91 (150)
.++.+|+.++....|.++.++|+.++-..+...- ++-....|+. .|.++-|.+++.+|..-+..-...+
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l------ 821 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL------ 821 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh------
Confidence 4577899999888899999999999987764432 3334444444 4555668899999998887533222
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy12168 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 123 (150)
.++..+...|+.|-.+.. +|..+|+.+
T Consensus 822 ----~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 822 ----DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ----cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 235778888888877766 899999887
No 122
>KOG0035|consensus
Probab=89.32 E-value=1.6 Score=36.58 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=62.2
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
...++.+|+-++....|..+++++..++..+|... ...+.....+..++...|++..|.+++.+|...|.....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~------e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNT------EEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCccc------chhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 35678899999999999999999999998764322 224556778888888889999999999999999988776
Q ss_pred hHH
Q psy12168 131 QLE 133 (150)
Q Consensus 131 ~~~ 133 (150)
.+.
T Consensus 820 ~l~ 822 (890)
T KOG0035|consen 820 DLD 822 (890)
T ss_pred hhc
Confidence 653
No 123
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=89.13 E-value=1.7 Score=26.67 Aligned_cols=75 Identities=7% Similarity=0.149 Sum_probs=46.9
Q ss_pred hhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHHH
Q psy12168 59 KLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEK 134 (150)
Q Consensus 59 ~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~~ 134 (150)
+.||+..+.+|+.+++...++. |..+...+.......+...+.++.-.-...+...++..=+..++.-.+..++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~-g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~q~ 84 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE-GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSMQS 84 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC-CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhHHH
Confidence 3567777778888888777664 11111112233344555666666666656677788888888888888876544
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.49 E-value=5.3 Score=26.31 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHhh---ccCCCCceeHHHHHHHHHHhc---cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcC
Q psy12168 19 HYVFKAF---DVNCNGAISFRDLLVTLSTLL---RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGR 87 (150)
Q Consensus 19 ~~~f~~~---d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~ 87 (150)
+.+|..| ...+...++-..|..+++... ...+...+-.+|..+-..+...|++++|..+|..+......
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 3445544 444456799999999998854 34778899999999877777789999999999988665543
No 125
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.97 E-value=2 Score=27.35 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=42.9
Q ss_pred hHHHHHHHHhhccCC--CCceeHHHHHHHHHHhcc------C--C----------HHHHHHHhhhhhccCCCCceeHHHH
Q psy12168 15 NLYAHYVFKAFDVNC--NGAISFRDLLVTLSTLLR------G--S----------IYEKLRWTFKLYDINGDGCISRSEL 74 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~--~g~i~~~ef~~~~~~~~~------~--~----------~~~~~~~~f~~~d~~~~g~I~~~e~ 74 (150)
-..+.++|.....++ +..++..++..++..+.. + . .+--+..++..||++++|.|+.-+|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 345567888776544 467999999999877541 1 1 1123578999999999999999998
Q ss_pred HHHHH
Q psy12168 75 TQIVQ 79 (150)
Q Consensus 75 ~~~l~ 79 (150)
+-.+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 126
>KOG4004|consensus
Probab=86.17 E-value=0.2 Score=34.29 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=39.8
Q ss_pred hhhccC-CCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy12168 59 KLYDIN-GDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126 (150)
Q Consensus 59 ~~~d~~-~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~ 126 (150)
-.+|.. -||++|-.|+.-.-.-+.+ ++..+...|.-.|.|+||+|+++||..++-
T Consensus 194 ~qld~~p~d~~~sh~el~pl~ap~ip-------------me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 194 GQLDQHPIDGYLSHTELAPLRAPLIP-------------MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred ccccCCCccccccccccccccCCccc-------------HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 344533 6888888887654322211 257788899999999999999999998764
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=85.76 E-value=6.2 Score=26.56 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=46.1
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccC-------CHHHHHHHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG-------SIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-------~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
...+++|+++++.+.+.+++.|+...++.-... ...-+...+|... .+.+|.+..+.+..+.-
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 456899999999888889999999988764432 1234455666655 45688999998887653
No 128
>KOG4286|consensus
Probab=83.94 E-value=6.7 Score=32.52 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=72.7
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHH-------HHHHHHHHHhcCCCC
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELT-------QIVQAVHELMGRKNQ 90 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~-------~~l~~~~~~~~~~~~ 90 (150)
+..+.+.||...+|+|..-+|...+-.+.+...++....+|..+-.++...+ ...|- ++.+.+|+.....-.
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 3567889999999999999999999888888999999999999876665543 43333 333334443322211
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhh
Q psy12168 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~ 131 (150)
..+--+..+|+ -.++.-.|+...|..++...+..
T Consensus 551 -----NvepsvrsCF~--~v~~~pei~~~~f~dw~~~epqs 584 (966)
T KOG4286|consen 551 -----NIEPSVRSCFQ--FVNNKPEIEAALFLDWMRLEPQS 584 (966)
T ss_pred -----CCChHHHHHHH--hcCCCCcchHHHHHHHhccCcch
Confidence 11234566776 33444579999999988776654
No 129
>KOG2243|consensus
Probab=81.63 E-value=3.2 Score=37.06 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 20 YVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 20 ~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
.-|..+|++|.|.|+..+|..++... +..+..++..+..-...+.+...++++|+..+...
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 45778899999999999999998553 33445666666666677777889999999886653
No 130
>KOG1265|consensus
Probab=81.42 E-value=15 Score=31.37 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH------HHHhcCCCCchHHHHHHHHHHHHHHhcCCC----CCCccc
Q psy12168 48 GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV------HELMGRKNQTDAARKAKEQIDFVFRKLDLN----DDGVVT 117 (150)
Q Consensus 48 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is 117 (150)
-+...++..+|..+..+..-+++.++|+..+..- .+.+-.. ...+.+..+.+.|-++ ..|.++
T Consensus 217 lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~-------~~~~r~~~liekyEp~~~~a~~gqms 289 (1189)
T KOG1265|consen 217 LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPP-------ADPRRIQSLIEKYEPNSDNAEKGQMS 289 (1189)
T ss_pred cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCC-------CCHHHHHHHHHHcCCchhhhhccccc
Confidence 3555788999999998888899999999998762 1111111 1236788888888665 568999
Q ss_pred HHHHHHHHHcchh
Q psy12168 118 LEEFIESCLKVST 130 (150)
Q Consensus 118 ~~ef~~~~~~~~~ 130 (150)
.+-|..++..-..
T Consensus 290 ~dgf~ryl~gdEn 302 (1189)
T KOG1265|consen 290 TDGFVRYLMGDEN 302 (1189)
T ss_pred hhhhHHHhhCCcc
Confidence 9999999877443
No 131
>PLN02228 Phosphoinositide phospholipase C
Probab=81.28 E-value=9.5 Score=30.76 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhcc--CCHHHHHHHhhhhhccC----CCCceeHHHHHHHHHH
Q psy12168 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR--GSIYEKLRWTFKLYDIN----GDGCISRSELTQIVQA 80 (150)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~~----~~g~I~~~e~~~~l~~ 80 (150)
..+...+..+|..+-. ++.++.++|..++..... ....+.+..++..+... ..|.++.+.|..++..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 3467888999999864 357999999999988653 24566778888887543 3467999999998864
No 132
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=80.67 E-value=2.9 Score=17.75 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=9.4
Q ss_pred ccCCCCceeHHHHHHH
Q psy12168 26 DVNCNGAISFRDLLVT 41 (150)
Q Consensus 26 d~~~~g~i~~~ef~~~ 41 (150)
|.|+||+|+--++...
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777766666544
No 133
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=80.24 E-value=10 Score=24.92 Aligned_cols=64 Identities=13% Similarity=0.340 Sum_probs=44.8
Q ss_pred hccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH
Q psy12168 61 YDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 61 ~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~ 132 (150)
+...+...++-.-|..+++.-+- +... .+...+..+|..+-..+...|++++|..+|.......
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~~i-~d~k-------~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDCGI-IDKK-------LTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHTSS---SS-------S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHcCC-CCCC-------CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 34556667999999999987421 1111 2357889999998777777899999999998776544
No 134
>KOG0042|consensus
Probab=80.09 E-value=3.3 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=54.3
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
...+.-|..+|.+..|.++..+.+++++..+ .++. ++..+++.+..|.+-+|.+++.||.+++....
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d---------~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD---------EDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC---------HHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 3446778899999999999999999998763 2222 57888899999999999999999988876554
No 135
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.64 E-value=10 Score=22.37 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=53.5
Q ss_pred ceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhc
Q psy12168 32 AISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108 (150)
Q Consensus 32 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (150)
.||..|+..+-+.+.-+.+...+..+...+-.+.=....-++-..++..+....+ +.+-..++.+|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~--------p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITS--------PQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHH
Confidence 4899999999999988888999999998886666666677788888887755433 34557788888765
No 136
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=77.55 E-value=9.7 Score=23.15 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhh----ccCCCCceeHHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLY----DINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~----d~~~~g~I~~~e~~~~l~~~ 81 (150)
.+++-|..+-. ||.+....|..|+-+- .+.+-+..+|..+ ... ...|+.+|+...|..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 35666777755 8999999999998643 4566666666655 223 4679999999998765
No 137
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.24 E-value=13 Score=22.21 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=39.9
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhcc-----------CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLR-----------GSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
.++-+|+.+ .+.+|.++...|...+..... +..+..++..|+.. .....|+.+.|...+..
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 456788888 578999999999888766421 34567788888886 34556999999988763
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=77.01 E-value=4.6 Score=26.17 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred CceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcC-------CCCCCcccHHHHHHHHHcchh
Q psy12168 67 GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD-------LNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 67 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~g~is~~ef~~~~~~~~~ 130 (150)
+.|+..||.+.-. ..+.- ...++.+++.|. .++++.|+++.|..+|...-.
T Consensus 6 ~~lsp~eF~qLq~-y~eys------------~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 6 VSLSPEEFAQLQK-YSEYS------------TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp S-S-HHHHHHHHH-HHHH----------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eccCHHHHHHHHH-HHHHH------------HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 5688888887543 32332 246777777773 355669999999998876543
No 139
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=75.22 E-value=4.3 Score=23.01 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=32.0
Q ss_pred CceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 31 GAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
-.++|..+...++...... ....+...|+.=..+.|+.+||+..++.+
T Consensus 7 p~~~F~~L~~~l~~~l~~~---~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPS---KMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4577777777776653333 34444444444457789999999999985
No 140
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=74.11 E-value=3.8 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 50 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
+.+.+..+|+.+ .++.++|+-+++.+.+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 457888999999 78889999999998864
No 141
>KOG0042|consensus
Probab=72.05 E-value=11 Score=30.39 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
...-|..+|.+..|.++..+.+..+.......+........+..|.+-.|.+...||.+.+..+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4567889999999999999999999887767778888888899998889999999999887764
No 142
>KOG4301|consensus
Probab=72.01 E-value=32 Score=26.00 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARK 96 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 96 (150)
.+..+...+|+.+.|+++.--....+.....+-..++++.+|..... .+|.+..-.+-..+......-+.......-.-
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlslpT~v~e~psfg~ 189 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGY 189 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcCCchhhcCCCcch
Confidence 34456667899999998888777777666666778899999998864 45665555555555543222111111111111
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhH
Q psy12168 97 AKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 97 ~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~ 132 (150)
++..++..|- .+..++++.|.+.+...++..
T Consensus 190 te~~a~~cf~-----qqrKv~Ln~fldtl~sdp~p~ 220 (434)
T KOG4301|consen 190 TELSARLCFL-----QQRKVELNQFLDTLMSDPPPQ 220 (434)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCch
Confidence 2344444443 246788899998887777543
No 143
>KOG0998|consensus
Probab=71.11 E-value=1.4 Score=37.11 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=54.4
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
...++|...|.+.+|.|+..+....+.. .+.....+.-+|...|..++|.+++++|.-.+..+
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3456899999999999999999888765 57788999999999999999999999888766554
No 144
>PLN02222 phosphoinositide phospholipase C 2
Probab=70.67 E-value=22 Score=28.88 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccC--CHHHHHHHhhhhhcc-CCCCceeHHHHHHHHHH
Q psy12168 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG--SIYEKLRWTFKLYDI-NGDGCISRSELTQIVQA 80 (150)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~d~-~~~g~I~~~e~~~~l~~ 80 (150)
+...+..+|..+-. ++.++.++|..++...... ...+.+..++..+.. ...+.++.+.|..++..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45688899999863 4689999999999886632 456677777777632 24567999999998864
No 145
>PLN02230 phosphoinositide phospholipase C 4
Probab=70.09 E-value=25 Score=28.61 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccC---CHHHHHHHhhhhhc-------cCCCCceeHHHHHHHHHH
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRG---SIYEKLRWTFKLYD-------INGDGCISRSELTQIVQA 80 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~d-------~~~~g~I~~~e~~~~l~~ 80 (150)
.+...+..+|..+..++ +.++.++|..++...... .+.+.+..++..+- .-+.+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45678899999996443 789999999999887632 24455555554331 123456999999998764
No 146
>PLN02952 phosphoinositide phospholipase C
Probab=69.30 E-value=15 Score=29.88 Aligned_cols=56 Identities=9% Similarity=0.140 Sum_probs=39.9
Q ss_pred CCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 65 GDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 65 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
+.|.+++++|....+.+-. ... ....++..+|..+..++ +.++.++|..++.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~--~~~-------~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI--TEA-------EPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc--ccC-------CChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 3579999999877765411 000 01468899999996544 68999999999987653
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=68.42 E-value=6.3 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.0
Q ss_pred ccccccccCCChhHHHHHHHHhhccCC---CCceeHHHHHHHHHHhc
Q psy12168 3 NVTSKEGVIRDSNLYAHYVFKAFDVNC---NGAISFRDLLVTLSTLL 46 (150)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~f~~~d~~~---~g~i~~~ef~~~~~~~~ 46 (150)
.-|.+|.+...+.++..++|..+-... .+.|+.+|+..++.++.
T Consensus 48 s~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 48 SDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp GGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 457778888888999999999875422 36799999999987763
No 148
>KOG2419|consensus
Probab=67.72 E-value=7.4 Score=31.81 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHH---------HHHhhhhhccCCC--------------------
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK---------LRWTFKLYDINGD-------------------- 66 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~---------~~~~f~~~d~~~~-------------------- 66 (150)
-..++++...|.+.+++++|.+|......+..-...+. ...+|..+|.+++
T Consensus 437 c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~ 516 (975)
T KOG2419|consen 437 CFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLK 516 (975)
T ss_pred hhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccc
Confidence 34567888899999999999999888776654333222 4678888999998
Q ss_pred ---CceeHHHHHHHHHH
Q psy12168 67 ---GCISRSELTQIVQA 80 (150)
Q Consensus 67 ---g~I~~~e~~~~l~~ 80 (150)
|.++.+|.+.++..
T Consensus 517 ~s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 517 KSFGVVTVDELVALLAL 533 (975)
T ss_pred cccCeeEHHHHHHHHHH
Confidence 99999999998874
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=67.08 E-value=24 Score=28.54 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=48.1
Q ss_pred CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCC----CCCcccHHHHHHH
Q psy12168 49 SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN----DDGVVTLEEFIES 124 (150)
Q Consensus 49 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~ 124 (150)
.+..++..+|..+-. ++.++.++|...+....... ....+.+..++..+... ..|.++++.|..+
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGER---------HAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCc---------cCCHHHHHHHHHHhccchhhcccCccCHHHHHHH
Confidence 456888999988853 35799999999887652111 01134567777777543 3468999999999
Q ss_pred HHcc
Q psy12168 125 CLKV 128 (150)
Q Consensus 125 ~~~~ 128 (150)
+...
T Consensus 90 l~s~ 93 (567)
T PLN02228 90 LFSD 93 (567)
T ss_pred hcCc
Confidence 9654
No 150
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=66.60 E-value=24 Score=20.81 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=37.5
Q ss_pred CceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 31 GAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
-.|.+.+|...+..............+=...|..+++.||.=||--..+-.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 469999999999987655554555666667899999999999988665544
No 151
>KOG4004|consensus
Probab=64.10 E-value=2.7 Score=28.94 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.0
Q ss_pred HHHhhccCC-CCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 21 VFKAFDVNC-NGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 21 ~f~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
-|-.+|... ||.+|-.|+..+-.-+ -+-+.=+...|.-.|.++||+|+.+|+...+.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 344556544 7778877775542211 12234457788999999999999999887653
No 152
>KOG2871|consensus
Probab=63.60 E-value=13 Score=28.37 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCH-HHHHHHhhhhhccCCCCceeHHHHHHHH
Q psy12168 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSI-YEKLRWTFKLYDINGDGCISRSELTQIV 78 (150)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~f~~~d~~~~g~I~~~e~~~~l 78 (150)
..+.+.+++.|+.+|+.++|.|+-.-+...+.......+ .+.+..+=+.+|+.+-|.|-..++...+
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 345778899999999999999999999988887764433 4556666667888888888777655443
No 153
>KOG1265|consensus
Probab=61.10 E-value=24 Score=30.14 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=53.3
Q ss_pred hhHHHHHHHHhhccCCCCceeHHHHHHHHHHhcc----------CCHHHHHHHhhhhhccC----CCCceeHHHHHHHHH
Q psy12168 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR----------GSIYEKLRWTFKLYDIN----GDGCISRSELTQIVQ 79 (150)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~----------~~~~~~~~~~f~~~d~~----~~g~I~~~e~~~~l~ 79 (150)
+...++++|..+..++.-.++.+++..++..... ......++.+...|..+ .+|.++.+-|++++.
T Consensus 219 pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 219 PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3567889999998887789999999999976543 23457788888888766 578899999999876
Q ss_pred H
Q psy12168 80 A 80 (150)
Q Consensus 80 ~ 80 (150)
.
T Consensus 299 g 299 (1189)
T KOG1265|consen 299 G 299 (1189)
T ss_pred C
Confidence 3
No 154
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=59.01 E-value=36 Score=20.27 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 66 DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 66 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
||.++..|...+-..+....+-. ......++..+........++.+|.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD---------AEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56666666555444332222211 2344445555544444556677777666543
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=53.91 E-value=46 Score=27.13 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHcc
Q psy12168 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDL-NDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 50 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~g~is~~ef~~~~~~~ 128 (150)
...++..+|..+-. ++.++.++|...|........ ...+.+..++..+.. ...+.++++.|..++...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~---------~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDK---------ATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCcc---------CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 34588899988853 468999999998877532100 123455566665432 245679999999999764
No 156
>KOG0506|consensus
Probab=53.58 E-value=76 Score=25.30 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhh---hhhcc-----CCCCceeHHHHHHHHHHHHH----Hhc
Q psy12168 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTF---KLYDI-----NGDGCISRSELTQIVQAVHE----LMG 86 (150)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f---~~~d~-----~~~g~I~~~e~~~~l~~~~~----~~~ 86 (150)
+-+|..+-....+++++--|..+++..+-..++-.+..++ +.+|. ...+.++.+-|++++..-.. .+.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALr 168 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALR 168 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHh
Confidence 3477777655569999999999999987554444444443 33342 34567899999988654221 111
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCCc
Q psy12168 87 RKNQTDAARKAKEQIDFVFRKLDLNDDGV 115 (150)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 115 (150)
...-.+........+..+|+..-....|.
T Consensus 169 kqmVIPdw~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 169 KQMVIPDWEEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred cCccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 11222223333445566666655554443
No 157
>PLN02230 phosphoinositide phospholipase C 4
Probab=53.44 E-value=1e+02 Score=25.30 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=45.3
Q ss_pred CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH----hc---CCCCCCcccHHHH
Q psy12168 49 SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFR----KL---DLNDDGVVTLEEF 121 (150)
Q Consensus 49 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---d~~~~g~is~~ef 121 (150)
.+..++..+|..+..++ +.++.++|...|..... .... ...+.+..++. .. ..-+.+.++++.|
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~----~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F 96 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGG----GEGE----TSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDF 96 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC----Cccc----CCHHHHHHHHHHHHhhccccccccccccCHHHH
Confidence 45678999999996444 79999999999987521 1000 01233333333 22 2224567999999
Q ss_pred HHHHHcc
Q psy12168 122 IESCLKV 128 (150)
Q Consensus 122 ~~~~~~~ 128 (150)
..++...
T Consensus 97 ~~yL~s~ 103 (598)
T PLN02230 97 NYYLFST 103 (598)
T ss_pred HHHHcCc
Confidence 9988663
No 158
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=51.73 E-value=33 Score=17.95 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHcchhhHHHHHHhHh
Q psy12168 115 VVTLEEFIESCLKVSTQLEKSIESCL 140 (150)
Q Consensus 115 ~is~~ef~~~~~~~~~~~~~~i~~~~ 140 (150)
.+|++|+...+....+.+.+.++++-
T Consensus 7 ~ls~~eL~~rl~~LD~~ME~Eieelr 32 (49)
T PF11629_consen 7 FLSYEELQQRLASLDPEMEQEIEELR 32 (49)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999998877777654
No 159
>KOG4286|consensus
Probab=50.82 E-value=56 Score=27.55 Aligned_cols=97 Identities=10% Similarity=0.200 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhccCC-CCceeHHHHHHHHHHhcc----------C---CHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 15 NLYAHYVFKAFDVNC-NGAISFRDLLVTLSTLLR----------G---SIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~-~g~i~~~ef~~~~~~~~~----------~---~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
-..+.++|..++-.+ +..++..+.+.++..... . .-+--++.+++.||...+|.|..-+|+-.+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 345567888888665 456777777777644311 0 11234689999999999999999999988776
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy12168 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~ 123 (150)
+.+.. .++....+|.....++.-.+ ...|-.
T Consensus 499 lck~~-----------leek~~ylF~~vA~~~sq~~-q~~l~l 529 (966)
T KOG4286|consen 499 LCKAH-----------LEDKYRYLFKQVASSTSQCD-QRRLGL 529 (966)
T ss_pred Hhcch-----------hHHHHHHHHHHHcCchhhHH-HHHHHH
Confidence 53221 25667799999877765443 333333
No 160
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=49.16 E-value=57 Score=24.51 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=36.0
Q ss_pred HHHHHhhhhh--ccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLY--DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~--d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
+++..+...+ |.|..+.+--+||.+.+..+- ++....-+.-+-+++=..=.|.+-+.|+.+-+....
T Consensus 41 ~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~-----------~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~n 109 (351)
T CHL00185 41 EEIEAILEEFRADYNQQHFIRDNEFNQSWSNLD-----------EKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKN 109 (351)
T ss_pred HHHHHHHHHHHhCccccccccChhhhhchhhCC-----------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCC
Confidence 3334444333 555666666666665444321 111123344444555556677777888777776655
Q ss_pred h
Q psy12168 130 T 130 (150)
Q Consensus 130 ~ 130 (150)
|
T Consensus 110 P 110 (351)
T CHL00185 110 P 110 (351)
T ss_pred c
Confidence 5
No 161
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=48.47 E-value=56 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 101 IDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 101 ~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
+.-+-+++=..=.|.+-+.|+.+-+....|
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP 110 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNP 110 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCCh
Confidence 333444444555666666666666655444
No 162
>KOG2557|consensus
Probab=48.26 E-value=1.2e+02 Score=23.27 Aligned_cols=53 Identities=25% Similarity=0.454 Sum_probs=44.0
Q ss_pred CceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHH
Q psy12168 31 GAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83 (150)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 83 (150)
..++++.+.........+...+..+.++...+.+++|......+.+.+....+
T Consensus 73 ~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 73 DKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred ccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 46888888777766667788899999999999999999999998888877543
No 163
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=48.00 E-value=57 Score=24.58 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=41.4
Q ss_pred HHHHHHhhhhh--ccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcc
Q psy12168 51 YEKLRWTFKLY--DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128 (150)
Q Consensus 51 ~~~~~~~f~~~--d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~ 128 (150)
++++..+...+ |.|..+.+--+||.+.+..+- .+....-+.-+-+++=..=.|.+-+.|+.+-+...
T Consensus 44 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~-----------~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~ 112 (355)
T PRK13654 44 REELDAILEEMRADYNRHHFVRDEEFDQDWDHLD-----------PETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR 112 (355)
T ss_pred HHHHHHHHHHHHhCcccccccCChhhhhchhhCC-----------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc
Confidence 33444444433 555666666666666544321 11112334444555555667788888887777655
Q ss_pred hhhHHHHHHhHhhhhh
Q psy12168 129 STQLEKSIESCLKVST 144 (150)
Q Consensus 129 ~~~~~~~i~~~~~~~d 144 (150)
.| .+.+++..+.
T Consensus 113 nP----~lae~F~lMa 124 (355)
T PRK13654 113 NP----LLAELFQLMA 124 (355)
T ss_pred Cc----HHHHHHHHHh
Confidence 55 3444444433
No 164
>KOG1264|consensus
Probab=46.14 E-value=2e+02 Score=24.96 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHh-----hhhhccCCCCceeHHHHHHHHHHHHHHhcCCC
Q psy12168 15 NLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-----FKLYDINGDGCISRSELTQIVQAVHELMGRKN 89 (150)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~-----f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~ 89 (150)
..++.+-|..... ..+.++|++|..+.+.+........+-.. ...-+...--.|++.||.+.+..-...
T Consensus 180 ~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e----- 253 (1267)
T KOG1264|consen 180 AKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQE----- 253 (1267)
T ss_pred HHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHH-----
Confidence 3444444444333 34568899988887765533322222111 111111122458899998887643111
Q ss_pred CchHHHHHHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHcchhhH
Q psy12168 90 QTDAARKAKEQIDFVFRKLDLN-----DDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~d~~-----~~g~is~~ef~~~~~~~~~~~ 132 (150)
....-...+...++.|-.| ..-++++.||+.++-.....+
T Consensus 254 ---~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreNsl 298 (1267)
T KOG1264|consen 254 ---HWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRENSL 298 (1267)
T ss_pred ---HhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhccccc
Confidence 0111123455556655222 233899999999998777655
No 165
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=45.40 E-value=24 Score=19.60 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=18.9
Q ss_pred hhhccCCCCceeHHHHHHHHHH
Q psy12168 59 KLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 59 ~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
+.||+..+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999998864
No 166
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.28 E-value=45 Score=21.55 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhh
Q psy12168 102 DFVFRKLDLNDDGVVTLEEFIESCLKVSTQL-EKSIESCLKVST 144 (150)
Q Consensus 102 ~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d 144 (150)
..+++.+-...++.+|.+|+.+.+...++.+ ..+|+..+..+.
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~ 63 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3444444444567999999999999888777 556777776543
No 167
>KOG1707|consensus
Probab=44.14 E-value=28 Score=28.24 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhh-hccCCCCceeHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKL-YDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~-~d~~~~g~I~~~e~~~~l~~ 80 (150)
.++..+|..+|.++||-++..|+....+.....+ +....+.. --.+..|.+++.-|...|.-
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p---W~~~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP---WTSSPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC---CCCCcccccceecccceeehhhHHHHHHH
Confidence 4578899999999999999999998887654222 00000000 01236788888888877653
No 168
>KOG0998|consensus
Probab=43.49 E-value=19 Score=30.64 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=55.3
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
......|...|..++|.|+-.+-..++..- +...+.+-.+|...|..+.|++...+|...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHh
Confidence 456789999999999999999887777554 6777888999999999999999999999988874
No 169
>KOG2871|consensus
Probab=43.39 E-value=17 Score=27.70 Aligned_cols=62 Identities=29% Similarity=0.478 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHH
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~ 122 (150)
.+.++..|+.+|..+.|.|+-+-+..++..+....+. .+.+..+=...|+..-|.|-..+|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse----------~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSE----------PAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccC----------HHHHHHhcCccChhhcceEEecccc
Confidence 5789999999999999999999999988876422221 2444444445566666665555543
No 170
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=43.25 E-value=46 Score=16.81 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHhcC-CC-CCCcccHHHHHHHHHcchhh
Q psy12168 99 EQIDFVFRKLD-LN-DDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 99 ~~~~~~~~~~d-~~-~~g~is~~ef~~~~~~~~~~ 131 (150)
..+..+|..+. .+ ....++..||..++...-|.
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~ 40 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKELPN 40 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHH
Confidence 44555666664 33 34589999999999776554
No 171
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=40.21 E-value=69 Score=17.98 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhc
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (150)
..+..+...++....--+-..++..++..++..+|.. ..++.+..+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~-------~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEV-------VTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS---------HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHhh
Confidence 4445555555544444466678888898898888864 2367788888765
No 172
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=39.70 E-value=99 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=15.4
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 102 DFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 102 ~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
.-+-+++=..=.|.+-+.|+.+-+....|
T Consensus 66 dFLerSctaEFSGflLYKEl~rrlk~~nP 94 (323)
T cd01047 66 EFLERSCTSEFSGFLLYKELGRRLKNTNP 94 (323)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHcccCCc
Confidence 33334444455566666666665555444
No 173
>KOG1785|consensus
Probab=39.01 E-value=1.3e+02 Score=23.38 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=52.5
Q ss_pred CceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhc--
Q psy12168 31 GAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL-- 108 (150)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (150)
-.+.+..|..++.......+--++..+=...|..+++.|+--||--.-+.+ .-+..+++.|
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-----------------qPw~tllkNWq~ 251 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF-----------------QPWKTLLKNWQT 251 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-----------------ccHHHHHHhhhh
Confidence 458888999888776544444555566667888999999877775433322 1233344444
Q ss_pred -CCCCCC---cccHHHHHHHHHcc
Q psy12168 109 -DLNDDG---VVTLEEFIESCLKV 128 (150)
Q Consensus 109 -d~~~~g---~is~~ef~~~~~~~ 128 (150)
...+-| ++||+|..+-++..
T Consensus 252 LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 252 LAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred hhccCCceeEEeeHHHHHHHHHHH
Confidence 345556 57999988766554
No 174
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=38.52 E-value=88 Score=23.42 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 101 IDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 101 ~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
+.-+-+++=..=.|.+-+.|+.+-+....|
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P 104 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDP 104 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCCh
Confidence 333444444455667777777666655554
No 175
>KOG1954|consensus
Probab=38.34 E-value=69 Score=24.86 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHH
Q psy12168 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77 (150)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~ 77 (150)
....+|..+.+- +|+|+-..-...+-. ...+...+-.+|+..|.++||-++-+||.-+
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 356777777543 677877665555432 3455577889999999999999999999743
No 176
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.24 E-value=48 Score=17.54 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=18.8
Q ss_pred CCCceeHHHHHHHHHHhccCCHHHHHHHhh
Q psy12168 29 CNGAISFRDLLVTLSTLLRGSIYEKLRWTF 58 (150)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 58 (150)
.+|.|+..||-.-+.......+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 368888888887776654444444444443
No 177
>PLN02223 phosphoinositide phospholipase C
Probab=38.03 E-value=1.8e+02 Score=23.57 Aligned_cols=67 Identities=9% Similarity=-0.089 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHhhccCCCCceeHHHHHHHH---HHhc--cCCHHHHHHHhhhhhccC--------CCCceeHHHHHHHHH
Q psy12168 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTL---STLL--RGSIYEKLRWTFKLYDIN--------GDGCISRSELTQIVQ 79 (150)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~---~~~~--~~~~~~~~~~~f~~~d~~--------~~g~I~~~e~~~~l~ 79 (150)
.+...+..+|..+- .++|.++.+.+..++ .... .....+.++.+++.+-.. ..+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678899999994 566788888888877 4333 233445555555443211 235699999999876
Q ss_pred H
Q psy12168 80 A 80 (150)
Q Consensus 80 ~ 80 (150)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 4
No 178
>KOG2419|consensus
Probab=37.33 E-value=1.6e+02 Score=24.62 Aligned_cols=77 Identities=23% Similarity=0.244 Sum_probs=51.4
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCC------------------
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD------------------ 113 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------------------ 113 (150)
--...++..+|.+-++.+++.+|-.....++..+..... ...........+|...|.+++
T Consensus 437 c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~--~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~ 514 (975)
T KOG2419|consen 437 CFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKL--AWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPF 514 (975)
T ss_pred hhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhc--chhhhcccchhheehhhccCCcccCccccchhhhccccc
Confidence 445677888899999999999988877666543321100 000111234557777888888
Q ss_pred -----CcccHHHHHHHHHcchh
Q psy12168 114 -----GVVTLEEFIESCLKVST 130 (150)
Q Consensus 114 -----g~is~~ef~~~~~~~~~ 130 (150)
|.++.+|.+.++...-.
T Consensus 515 ~~~s~~~vtVDe~v~ll~~~i~ 536 (975)
T KOG2419|consen 515 LKKSFGVVTVDELVALLALDII 536 (975)
T ss_pred cccccCeeEHHHHHHHHHHHHH
Confidence 99999999988874433
No 179
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=36.79 E-value=51 Score=18.05 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=18.4
Q ss_pred ceeHHHHHHHHHHhccCCHHHHHHH
Q psy12168 32 AISFRDLLVTLSTLLRGSIYEKLRW 56 (150)
Q Consensus 32 ~i~~~ef~~~~~~~~~~~~~~~~~~ 56 (150)
.|+.++|..+++......+.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4899999999988776666666554
No 180
>KOG4629|consensus
Probab=35.03 E-value=1.5e+02 Score=24.98 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.....+|+..-..+.-.+..+.+...+. .+.+..++..++..-++.|+.+.|.......-
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~~------------------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~ 463 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFMG------------------DEEAERAFSLFEGASDENITRSSFKEWIVNIY 463 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcCC------------------HHHHHHHHHhhhhhcccCccHHHHHHHHHHHH
Confidence 4456777777666666666666655443 47788888989887777799999988776554
No 181
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=34.30 E-value=1.4e+02 Score=19.69 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCC
Q psy12168 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRK 88 (150)
Q Consensus 52 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~ 88 (150)
+.+..-....|..+.+++|..|++.++-.+-..++..
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~ 105 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQS 105 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCC
Confidence 4445555667888888999999999998876666444
No 182
>KOG4403|consensus
Probab=33.70 E-value=56 Score=25.59 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred CCCCceeHHHHHHHHHHhcc----CCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy12168 28 NCNGAISFRDLLVTLSTLLR----GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDF 103 (150)
Q Consensus 28 ~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (150)
.|+...+..||+........ ...-+.++.+-+.+|.|.+|.|+.+|=-..++.=.++.+.. +.-.+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~----------~kr~~ 109 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDST----------RKRSE 109 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccch----------hhhhh
Confidence 55666777777665433221 12346788888889999999998888777766543322211 11111
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHcch
Q psy12168 104 VFRKLDLNDDGVVTLEEFIESCLKVS 129 (150)
Q Consensus 104 ~~~~~d~~~~g~is~~ef~~~~~~~~ 129 (150)
.|.. .|..||.+++-+.+....
T Consensus 110 ---~fH~-dD~~ItVedLWeaW~~Se 131 (575)
T KOG4403|consen 110 ---KFHG-DDKHITVEDLWEAWKESE 131 (575)
T ss_pred ---hccC-CccceeHHHHHHHHHhhh
Confidence 2222 345788887766665544
No 183
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=32.55 E-value=63 Score=20.34 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhccCCCCceeHHHHHHHHH
Q psy12168 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQ 79 (150)
Q Consensus 50 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~ 79 (150)
+++.+..+|..+=.|..|.|.+.||..-+.
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 467777888888888888888888877665
No 184
>KOG3866|consensus
Probab=32.45 E-value=89 Score=23.44 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=32.9
Q ss_pred ccCCChhHHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCC
Q psy12168 9 GVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65 (150)
Q Consensus 9 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~ 65 (150)
-+..+....-+.+|..+|.|+||.++-.|+...+. ..+..+|.--+.+.
T Consensus 237 DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFt--------kELEKvYdpkNeeD 285 (442)
T KOG3866|consen 237 DGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFT--------KELEKVYDPKNEED 285 (442)
T ss_pred cCCCcccCCcchheeeeccCCcccccHHHHHHHHH--------HHHHHhcCCCCcch
Confidence 33344444456789999999999999999887764 34566655544433
No 185
>PLN02223 phosphoinositide phospholipase C
Probab=32.12 E-value=2.7e+02 Score=22.69 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=47.9
Q ss_pred CHHHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcC----CCCCCcccHHHHHHH
Q psy12168 49 SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD----LNDDGVVTLEEFIES 124 (150)
Q Consensus 49 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~g~is~~ef~~~ 124 (150)
...+.++.+|..+- .+.|..+.+.+.+.+.-+.+.-+.... .....+..+..++.... ....+.++++.|..+
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGA--GLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccC--CHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 45688999999994 667889999998888444222221111 12222344444444332 123367999999999
Q ss_pred HHcch
Q psy12168 125 CLKVS 129 (150)
Q Consensus 125 ~~~~~ 129 (150)
+....
T Consensus 90 L~s~~ 94 (537)
T PLN02223 90 LFSTE 94 (537)
T ss_pred hcCcc
Confidence 97643
No 186
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.88 E-value=90 Score=16.82 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHHHHHHhH
Q psy12168 97 AKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESC 139 (150)
Q Consensus 97 ~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~~~i~~~ 139 (150)
.++.+..++..-. ..+.++..++.+.+.-.++...+.+..+
T Consensus 6 ~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~vs~~tvt~ml~~L 46 (60)
T PF01325_consen 6 EEDYLKAIYELSE--EGGPVRTKDIAERLGVSPPTVTEMLKRL 46 (60)
T ss_dssp HHHHHHHHHHHHH--CTSSBBHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCccHHHHHHHHCCChHHHHHHHHHH
Confidence 3677888888776 6789999999999998888666555443
No 187
>KOG2301|consensus
Probab=31.47 E-value=24 Score=32.23 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHHHHHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 51 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
-+....+|+.+|+++.|.|...++...++.+.++++...+... +.+-..+-...+|.|+..+..-++.....
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--------kli~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--------KLISMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--------eeeeeecCcCCCCeeehhhHHHHHHHHhh
Confidence 3677899999999999999999999999987655554422211 22222333456777777776666655554
Q ss_pred hH
Q psy12168 131 QL 132 (150)
Q Consensus 131 ~~ 132 (150)
.+
T Consensus 1488 ~i 1489 (1592)
T KOG2301|consen 1488 GI 1489 (1592)
T ss_pred cc
Confidence 43
No 188
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=31.22 E-value=31 Score=18.16 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCCCcccHHHHHHHHHcchhhHHHHHHhHhhh
Q psy12168 111 NDDGVVTLEEFIESCLKVSTQLEKSIESCLKV 142 (150)
Q Consensus 111 ~~~g~is~~ef~~~~~~~~~~~~~~i~~~~~~ 142 (150)
.+++.+|..|+...+...++.-...+..+++.
T Consensus 18 ~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 18 AGGGPLSLSEIAARLPTSNPSAPPMLDRIMRL 49 (51)
T ss_dssp HTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 33689999999998874444334456666554
No 189
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=29.91 E-value=1e+02 Score=24.22 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHHHHHHhHh
Q psy12168 96 KAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCL 140 (150)
Q Consensus 96 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~~~i~~~~ 140 (150)
..+..+..++ .+-...++.-|.+||.+.+....|.+.+.++.+.
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~ 329 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMI 329 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHh
Confidence 3345566677 6666777899999999999999998877776654
No 190
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.97 E-value=1.4e+02 Score=19.32 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHcchhhH-HHHHHhHhhhhh
Q psy12168 114 GVVTLEEFIESCLKVSTQL-EKSIESCLKVST 144 (150)
Q Consensus 114 g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d 144 (150)
+.+|.+++...+...++.+ ...++..++.+.
T Consensus 35 ~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 35 GHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred CCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 3499999999999988888 666887777654
No 191
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=28.42 E-value=75 Score=14.83 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=11.2
Q ss_pred CCceeHHHHHHHHHHH
Q psy12168 66 DGCISRSELTQIVQAV 81 (150)
Q Consensus 66 ~g~I~~~e~~~~l~~~ 81 (150)
.|.|+.+|++.+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5677777777776654
No 192
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.28 E-value=1.1e+02 Score=20.34 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHcchhhH-HHHHHhHhhhh
Q psy12168 113 DGVVTLEEFIESCLKVSTQL-EKSIESCLKVS 143 (150)
Q Consensus 113 ~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~ 143 (150)
++.+|.+|+.+.+...++.+ ..+|+..+..+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 57999999999999988877 55677766554
No 193
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=27.18 E-value=56 Score=19.96 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=13.0
Q ss_pred CCCcccHHHHHHHHHcchhhH
Q psy12168 112 DDGVVTLEEFIESCLKVSTQL 132 (150)
Q Consensus 112 ~~g~is~~ef~~~~~~~~~~~ 132 (150)
.||.|+.++|.+.|...+..-
T Consensus 3 ~d~~~~~~~F~~~W~sl~~~~ 23 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPDSN 23 (114)
T ss_dssp TT----HHHHHHHHHHS-GGG
T ss_pred CCCccCHHHHHHHHHhCCccc
Confidence 469999999999999887643
No 194
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=27.07 E-value=1.1e+02 Score=16.19 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHcchhhHHHHHHhH
Q psy12168 113 DGVVTLEEFIESCLKVSTQLEKSIESC 139 (150)
Q Consensus 113 ~g~is~~ef~~~~~~~~~~~~~~i~~~ 139 (150)
.|.++..|+.+.+.-....+..++..+
T Consensus 12 ~~~~s~~ela~~~~VS~~TiRRDl~~L 38 (57)
T PF08220_consen 12 KGKVSVKELAEEFGVSEMTIRRDLNKL 38 (57)
T ss_pred cCCEEHHHHHHHHCcCHHHHHHHHHHH
Confidence 589999999999988887777776654
No 195
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=27.00 E-value=99 Score=16.82 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHhhccCCCCceeHHHHHHHHHH
Q psy12168 21 VFKAFDVNCNGAISFRDLLVTLST 44 (150)
Q Consensus 21 ~f~~~d~~~~g~i~~~ef~~~~~~ 44 (150)
+...++.+++|.|+...++.+=+.
T Consensus 20 L~~~~~~~~~g~Vpi~~i~~F~r~ 43 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTILSFNRM 43 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHTTSHHH
T ss_pred HHHHHHhcCCCcEeHHHHHchHHH
Confidence 334566777888888888776433
No 196
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=26.66 E-value=16 Score=16.98 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.3
Q ss_pred HHHHhcCCCCCCcccHHH
Q psy12168 103 FVFRKLDLNDDGVVTLEE 120 (150)
Q Consensus 103 ~~~~~~d~~~~g~is~~e 120 (150)
.++.+=|.|++-.|++++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 456677888888888764
No 197
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.97 E-value=62 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.1
Q ss_pred hhccCCCCceeHHHHHHHHHHh
Q psy12168 24 AFDVNCNGAISFRDLLVTLSTL 45 (150)
Q Consensus 24 ~~d~~~~g~i~~~ef~~~~~~~ 45 (150)
...+...|..+|+||+..+...
T Consensus 80 al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 80 ALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHhcCCccHHHHHHHHHhC
Confidence 4445677888888888887654
No 198
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=25.56 E-value=1.1e+02 Score=18.53 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=9.8
Q ss_pred CCceeHHHHHHHHHH
Q psy12168 66 DGCISRSELTQIVQA 80 (150)
Q Consensus 66 ~g~I~~~e~~~~l~~ 80 (150)
+|.|+.+||...+..
T Consensus 38 ~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQE 52 (96)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 466777777777665
No 199
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=25.36 E-value=81 Score=18.17 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=24.5
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCC
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~ 65 (150)
..++++...-- ..|.||+.++..++... ..+...+..+|..+...|
T Consensus 7 ~~i~~Li~~gK--~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 7 EAIKKLIEKGK--KKGYLTYDEINDALPED--DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHHHH--HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHh--hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHHHCC
Confidence 34455555432 35789999998888643 244566666666665443
No 200
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.31 E-value=45 Score=21.53 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q psy12168 65 GDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG-VVTLEEFIES 124 (150)
Q Consensus 65 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g-~is~~ef~~~ 124 (150)
|+..||.+||...+..-.+.+......... -.+.+..+.+.+...+.+ .+|..|..++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~l--d~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVEL--DPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEE--CHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 667789999988876532222111111000 135667777777776555 4888887765
No 201
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=24.30 E-value=1.5e+02 Score=16.85 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHcchhhHHHHHHhHhh
Q psy12168 99 EQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLK 141 (150)
Q Consensus 99 ~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~~~~~i~~~~~ 141 (150)
+.+..+-+.+-.+++-.+++..|.+.+......+++++.-+-.
T Consensus 4 eRlv~it~~L~~~P~~lisL~~Fae~f~~AKSsISEDl~iik~ 46 (70)
T PF09182_consen 4 ERLVAITKYLLENPNKLISLTYFAERFGAAKSSISEDLSIIKE 46 (70)
T ss_dssp HHHHHHHHHHHTSTT--EEHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcceEcHHHHHHHhcccccchHHHHHHHHH
Confidence 4455666677778888999999999999988888887554433
No 202
>KOG4403|consensus
Probab=24.16 E-value=2.5e+02 Score=22.23 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=41.1
Q ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHhc-cCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHH
Q psy12168 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80 (150)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 80 (150)
+.++.+-..+|-+.+|-|+.+|=-.+++.-. .......-...|.- .|.-|+.+++..+|..
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 4567777889999999999999888887633 22222222223332 3456999998888775
No 203
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=22.87 E-value=1.2e+02 Score=15.44 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=19.7
Q ss_pred CcccHHHHHHHHHcchhhHHHHHHhHh
Q psy12168 114 GVVTLEEFIESCLKVSTQLEKSIESCL 140 (150)
Q Consensus 114 g~is~~ef~~~~~~~~~~~~~~i~~~~ 140 (150)
+.+|..++.+.+.-....+..+++.+-
T Consensus 14 ~~it~~eLa~~l~vS~rTi~~~i~~L~ 40 (55)
T PF08279_consen 14 EPITAKELAEELGVSRRTIRRDIKELR 40 (55)
T ss_dssp TSBEHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 449999999988877776777666553
No 204
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=22.16 E-value=1.5e+02 Score=16.23 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 54 LRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 54 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
+..+...++......++.+|+...++++
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi 65 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSI 65 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5555555665567788999998888765
No 205
>PHA02105 hypothetical protein
Probab=21.63 E-value=1.3e+02 Score=16.33 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred ceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCC--cccHHHHHHHHHcch
Q psy12168 68 CISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG--VVTLEEFIESCLKVS 129 (150)
Q Consensus 68 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g--~is~~ef~~~~~~~~ 129 (150)
+++.+||.+++.. +++...+.-.+.++++=..|....-. ++|++||...+.-.+
T Consensus 4 klt~~~~~~a~~~--------ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 4 KLTKEDWESAKYQ--------NDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred eecHHHHHHHHHc--------CccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccc
Confidence 3566777766543 11112222234445555555554443 679999988764433
No 206
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=21.11 E-value=1.4e+02 Score=19.38 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred ceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchhh
Q psy12168 68 CISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQ 131 (150)
Q Consensus 68 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~~ 131 (150)
.||.+|+.+++..+...+. +.+.+..=.+.|+.|+++-+...+...+..
T Consensus 9 ~vTldevr~Av~~f~~~lp---------------~gi~rt~lv~~d~~iD~~~L~~yL~g~p~q 57 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEEDLP---------------KGINRTILVNDDQSIDFERLAPYLGGIPDQ 57 (140)
T ss_pred cccHHHHHHHHHHHHHhCc---------------cCCceEEEEcCCceecHHHHhhhcCCCCCc
Confidence 4788888888877644333 224444445677888888888777666643
No 207
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.91 E-value=2e+02 Score=17.30 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=11.7
Q ss_pred CCceeHHHHHHHHHHH
Q psy12168 66 DGCISRSELTQIVQAV 81 (150)
Q Consensus 66 ~g~I~~~e~~~~l~~~ 81 (150)
+|.|+.+||...+...
T Consensus 37 ~~~i~~EeF~~~Lq~~ 52 (92)
T smart00549 37 NGTITAEEFTSRLQEA 52 (92)
T ss_pred hCCCCHHHHHHHHHHH
Confidence 5678888888777653
No 208
>PHA03102 Small T antigen; Reviewed
Probab=20.81 E-value=2.6e+02 Score=18.47 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=2.5
Q ss_pred HHHHHhh
Q psy12168 52 EKLRWTF 58 (150)
Q Consensus 52 ~~~~~~f 58 (150)
.+++.+|
T Consensus 22 ~eIKkAY 28 (153)
T PHA03102 22 PLMRKAY 28 (153)
T ss_pred HHHHHHH
Confidence 3333333
No 209
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=20.75 E-value=2.2e+02 Score=19.45 Aligned_cols=35 Identities=23% Similarity=0.111 Sum_probs=19.7
Q ss_pred cCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhh
Q psy12168 27 VNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLY 61 (150)
Q Consensus 27 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~ 61 (150)
.+.+|.++.++++.....-....+.+.+..+...-
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 46789999999999887754445566666655443
No 210
>KOG3077|consensus
Probab=20.61 E-value=3.5e+02 Score=19.75 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=49.1
Q ss_pred CHHHHHHHhhhhh-ccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH--hcCCCCCCcccHHHHHHHH
Q psy12168 49 SIYEKLRWTFKLY-DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFR--KLDLNDDGVVTLEEFIESC 125 (150)
Q Consensus 49 ~~~~~~~~~f~~~-d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~g~is~~ef~~~~ 125 (150)
.+...+...|..+ |+.-+..|..+-+...+..+|. . .+.+..+.. .++...-|..+.+||...+
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~----~---------p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~ 127 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGV----E---------PEDISVLVLAWKLGAATMCEFSREEFLKGM 127 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCC----C---------chhHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 4445566666554 6666678999999999888742 2 122222222 2246667789999999988
Q ss_pred HcchhhHHHHHHhHhh
Q psy12168 126 LKVSTQLEKSIESCLK 141 (150)
Q Consensus 126 ~~~~~~~~~~i~~~~~ 141 (150)
..++-.-...+...+.
T Consensus 128 ~~l~~dS~d~lq~~l~ 143 (260)
T KOG3077|consen 128 TALGCDSIDKLQQRLD 143 (260)
T ss_pred HHcCCCcHHHHHHHHH
Confidence 8777543333443333
No 211
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=20.50 E-value=1.2e+02 Score=19.05 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHcchhhH-HHHHHhHhhhhhcc
Q psy12168 112 DDGVVTLEEFIESCLKVSTQL-EKSIESCLKVSTQN 146 (150)
Q Consensus 112 ~~g~is~~ef~~~~~~~~~~~-~~~i~~~~~~~d~~ 146 (150)
..|.++.+++.+-+...+..+ ..++..++..+.+.
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~~~~ 60 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNALKDE 60 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 457888888887776655444 55566666555443
No 212
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.42 E-value=2.2e+02 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=25.1
Q ss_pred cCCCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhc
Q psy12168 27 VNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYD 62 (150)
Q Consensus 27 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d 62 (150)
.+.+|.++.++++..++......+.+.+..+-..-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 367899999999998875444566666666555433
No 213
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.31 E-value=2e+02 Score=16.97 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=33.3
Q ss_pred CCCceeHHHHHHHHHHhccCCHHHHHHHhhhhhccCCCCceeHHHHHHHHHHH
Q psy12168 29 CNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81 (150)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 81 (150)
++|.|+-+++-.... .+.+.++.+.++... ...|....+-|..++..+
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHH
Confidence 468899999966543 356778888888885 344555666677776654
No 214
>PHA02335 hypothetical protein
Probab=20.31 E-value=2.3e+02 Score=17.57 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHhhhhhccCCCCceeHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhcCCCCCC--cccHHHHHHHHHcc
Q psy12168 55 RWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG--VVTLEEFIESCLKV 128 (150)
Q Consensus 55 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g--~is~~ef~~~~~~~ 128 (150)
..+.+-++ +-..|+.+||..=++.+ ..++..++++...++- ++-+.++.-++...
T Consensus 13 ~fAi~~Y~--np~sVt~ddf~~DlkRi-----------------~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF 69 (118)
T PHA02335 13 LFAIKNYN--NPQSVTYDDFEEDLKRF-----------------KYIKRLFKRYLNTGELKTHLILNHIIILYNVF 69 (118)
T ss_pred HHHHHhcC--CcccccHHHHHHHHHHH-----------------HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Confidence 33444443 33469999998877764 5667777777766554 44445554444433
No 215
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=20.14 E-value=1.4e+02 Score=19.84 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHcchh
Q psy12168 96 KAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130 (150)
Q Consensus 96 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~~~~~~~ 130 (150)
..-.+++.++..|+.+..|-+...||++.+....+
T Consensus 107 lrVk~LK~iL~~~g~~C~GC~EK~dfv~ri~el~~ 141 (154)
T PF10208_consen 107 LRVKQLKKILDDWGEDCKGCLEKSDFVRRIEELKP 141 (154)
T ss_dssp TCHHHHHHHHHHHTTT-SS-CSHHHHHHHCHCCCC
T ss_pred CcHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh
Confidence 33578899999999999999999999998877654
Done!