RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12168
(150 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 61.9 bits (151), Expect = 6e-13
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLS-TLLRGSIYEKLRWTFKLYDINGDGCISRS 72
S + +F+ D N + F + L +S L RG E+LR FKL+D + DG IS
Sbjct: 54 SEAEINKLFEEIDAG-NETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIG 112
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130
EL ++++ + +D E+++ + ++ D + DG + EEF + T
Sbjct: 113 ELRRVLK-----SLGERLSD------EEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159
Score = 35.4 bits (82), Expect = 0.005
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 31/102 (30%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVH----------------------------E 83
++L+ F+L+D + DG I R+EL +I++++
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLT 79
Query: 84 LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125
+M K + E++ F+ D + DG +++ E
Sbjct: 80 VMSVKLKRGDKE---EELREAFKLFDKDHDGYISIGELRRVL 118
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 56.0 bits (136), Expect = 1e-11
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 53 KLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLND 112
+LR F+L+D +GDG IS EL ++++ E + +E+ID + R++D +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLS-----------EEEIDEMIREVDKDG 49
Query: 113 DGVVTLEEFIE 123
DG + EEF+E
Sbjct: 50 DGKIDFEEFLE 60
Score = 50.6 bits (122), Expect = 2e-09
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
F+ FD + +G IS +L L +L G E++ + D +GDG I E +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 77 IVQ 79
++
Sbjct: 61 LMA 63
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 49.3 bits (118), Expect = 5e-09
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 59 KLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTL 118
KL D +GDG I EL ++++A+ + + + +E I+ F ++D + DG ++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDE-------EVEELIEADFNEIDKDGDGRISF 53
Query: 119 EEFIE 123
EEF+E
Sbjct: 54 EEFLE 58
Score = 37.3 bits (87), Expect = 1e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT----FKLYDINGDGCISRSELTQIV 78
K D + +G I +L L L E++ F D +GDG IS E + +
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 49.8 bits (119), Expect = 2e-08
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGS-IYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D + NG I F + L ++ ++ + E+++ FK++D +G+G IS +EL ++ +
Sbjct: 54 NEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
E + E++D + R+ D++ DG + EEF+
Sbjct: 114 GE-----------KLTDEEVDEMIREADVDGDGQINYEEFV 143
Score = 28.2 bits (63), Expect = 1.4
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 26/89 (29%)
Query: 58 FKLYDINGDGCISRSELTQIVQAV------HELMGRKNQTDA---------------ARK 96
F L+D +GDG I+ EL +++++ EL N+ DA ARK
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76
Query: 97 AK-----EQIDFVFRKLDLNDDGVVTLEE 120
K E+I F+ D + +G ++ E
Sbjct: 77 MKDTDSEEEIKEAFKVFDRDGNGFISAAE 105
Score = 25.5 bits (56), Expect = 8.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
FK FD + NG IS +L ++ L E++ + D++GDG I+ E +++
Sbjct: 90 FKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 39.3 bits (92), Expect = 3e-04
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 24/63 (38%)
Query: 58 FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
F+LYD++GDG I+R E +G +DA VF LDLN DG +T
Sbjct: 340 FRLYDLDGDGFITRE----------EWLG----SDA----------VFDALDLNHDGKIT 375
Query: 118 LEE 120
EE
Sbjct: 376 PEE 378
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 36.0 bits (84), Expect = 4e-04
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 65 GDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G I+R EL + + + + +E++D +FR+ D + DG ++ EEF
Sbjct: 1 EKGLITREELKRALALLGISLS-----------EEEVDILFREFDTDGDGKISFEEFCV 48
Score = 25.6 bits (57), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 30 NGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
G I+ +L L+ L E++ F+ +D +GDG IS E
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEE 45
Score = 25.2 bits (56), Expect = 4.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 21 VFKAFDVNCNGAISFRDLLVTL 42
+F+ FD + +G ISF + V L
Sbjct: 29 LFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 33.5 bits (78), Expect = 0.002
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 53 KLRWTFKLYDINGDGCISRSELTQIVQAV 81
+L+ F+L+D +GDG I E +++A+
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 28.9 bits (66), Expect = 0.13
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 100 QIDFVFRKLDLNDDGVVTLEEFIE 123
++ FR D + DG + EEF +
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKD 24
Score = 25.4 bits (57), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL 45
F+ FD + +G I F + L L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 32.4 bits (75), Expect = 0.006
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 53 KLRWTFKLYDINGDGCISRSELTQIVQAV 81
+L+ FK +D +GDG IS E ++++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 29.3 bits (67), Expect = 0.070
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 100 QIDFVFRKLDLNDDGVVTLEEFIE 123
++ F++ D + DG ++ EEF E
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKE 24
Score = 26.6 bits (60), Expect = 0.86
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL 45
FK FD + +G ISF + L L
Sbjct: 5 AFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|218051 pfam04380, BMFP, Membrane fusogenic activity. BMFP consists of two
structural domains, a coiled-coil C-terminal domain via
which the protein self-associates as a trimer, and an
N-terminal domain disordered at neutral pH but adopting
an amphipathic alpha-helical structure in the presence
of phospholipid vesicles, high ionic strength, acidic pH
or SDS. BMFP interacts with phospholipid vesicles though
the predicted amphipathic alpha-helix induced in the
N-terminal half of the protein and promotes aggregation
and fusion of vesicles in vitro.
Length = 79
Score = 32.9 bits (76), Expect = 0.012
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 74 LTQIVQAVHELMGRKNQT--DAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
L ++ + + + +G +A + + Q+ KLDL VT EEF
Sbjct: 8 LDELAKLLTDALGAAQGPRREAEKNVRAQLQSALSKLDL-----VTREEF 52
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 34.4 bits (79), Expect = 0.013
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 62 DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
D + DG +S SE + +++A L+ A + + +F+ DLN DGVVT++E
Sbjct: 189 DYDEDGQLSFSEFSDLIKAFGNLV-----------AANKKEELFKAADLNGDGVVTIDE- 236
Query: 122 IESCLKVSTQLEKSIESC 139
+ + L + + E I +C
Sbjct: 237 LAALLALQQEQEPIINNC 254
Score = 29.8 bits (67), Expect = 0.47
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 17 YAHYVFKAFDVNCNGAIS---FRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
+A + D + +G +S F DL+ L+ + E+L FK D+NGDG ++ E
Sbjct: 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEEL---FKAADLNGDGVVTIDE 236
Query: 74 LTQIV 78
L ++
Sbjct: 237 LAALL 241
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 31.0 bits (71), Expect = 0.020
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 58 FKLYDINGDGCISRSELTQIVQAVH 82
FKL+D +GDG IS EL + ++++
Sbjct: 6 FKLFDKDGDGYISAEELRKALRSLG 30
Score = 26.8 bits (60), Expect = 0.61
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 100 QIDFVFRKLDLNDDGVVTLEEFIE 123
++ F+ D + DG ++ EE +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRK 24
Score = 26.0 bits (58), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTL 45
FK FD + +G IS +L L +L
Sbjct: 3 REAFKLFDKDGDGYISAEELRKALRSL 29
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.9 bits (69), Expect = 0.049
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 57 TFKLYDINGDGCISRSELTQIV 78
F+ +D NGDG IS+ EL +++
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
Score = 29.6 bits (68), Expect = 0.053
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 104 VFRKLDLNDDGVVTLEEFIE 123
+FR+ D N DG ++ EE
Sbjct: 4 LFRQFDTNGDGKISKEELKR 23
Score = 24.9 bits (56), Expect = 3.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 21 VFKAFDVNCNGAISFRDL 38
+F+ FD N +G IS +L
Sbjct: 4 LFRQFDTNGDGKISKEEL 21
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium binding
sites, making it calcium insensitive. S100A10 has been
detected in brain, heart, gastrointestinal tract,
kidney, liver, lung, spleen, testes, epidermis, aorta,
and thymus. Structural data supports the homo- and
hetero-dimeric as well as hetero-tetrameric nature of
the protein. S100A10 has multiple binding partners in
its calcium free state and is therefore involved in many
diverse biological functions.
Length = 94
Score = 31.2 bits (71), Expect = 0.058
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLY-DINGD-GCISRSELTQIVQAVHELMG-RKNQTDAARKAKEQIDFVFRKL 108
E L TF Y +GD +SR EL ++++ EL KNQ D +D + + L
Sbjct: 8 ESLILTFHRYAGKDGDKNTLSRKELKKLME--KELSEFLKNQKDPM-----AVDKIMKDL 60
Query: 109 DLNDDGVVTLEEFI 122
D N DG V EEF+
Sbjct: 61 DQNRDGKVNFEEFV 74
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 31.2 bits (71), Expect = 0.068
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQ-IDFVFRKLDLND 112
L W F D N DG +SRSEL + +A M E I F+ D +
Sbjct: 55 LGWMFNQLDTNHDGYLSRSELAPL-RAPLVPM-------------EHCIKPFFKSCDADK 100
Query: 113 DGVVTLEEF 121
DG+++L E+
Sbjct: 101 DGLISLREW 109
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 29.6 bits (67), Expect = 0.19
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 96 KAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128
K ++ ID +F LD N DG ++ EEF+ +KV
Sbjct: 48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 30.4 bits (69), Expect = 0.22
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+++R F L+D +G G I EL +++ +G + + KE+I + +D +
Sbjct: 17 KEIREAFDLFDTDGSGTIDPKELKVAMRS----LGFEPK-------KEEIKQMIADVDKD 65
Query: 112 DDGVVTLEEFIE 123
G + EEF++
Sbjct: 66 GSGKIDFEEFLD 77
Score = 28.9 bits (65), Expect = 0.74
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE-LTQIVQA 80
F FD + +G I ++L V + +L E+++ D +G G I E L + +
Sbjct: 23 FDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTL 118
+ E R +E+I FR D + G ++L
Sbjct: 83 LGE-----------RDPREEILKAFRLFDDDKTGKISL 109
Score = 28.9 bits (65), Expect = 0.74
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLL--RGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
+ D + +G I F + L ++ L R E L+ F+L+D + G IS L ++
Sbjct: 58 MIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK-AFRLFDDDKTGKISLKNLKRVA 116
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
+ + E + TD + +E ID D N DG ++ EEF
Sbjct: 117 KELGETI-----TDE--ELQEMIDEA----DRNGDGEISEEEFY 149
Score = 26.6 bits (59), Expect = 4.3
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 1 MSNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKL 60
+ +E +++ F+ FD + G IS ++L L E+L+
Sbjct: 83 LGERDPREEILK--------AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDE 134
Query: 61 YDINGDGCISRSELTQI 77
D NGDG IS E +I
Sbjct: 135 ADRNGDGEISEEEFYRI 151
>gnl|CDD|217077 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1079
Score = 30.6 bits (70), Expect = 0.32
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 69 ISRSELTQIVQAVHELMGRKNQT---DAARKA--KEQIDFVFRKLDLNDDGVVTLEEFIE 123
++R+ L + + EL+ + D AR+ +E+I + +L L+ D EEF+E
Sbjct: 493 LTRAGLYGELAELEELIDEYREADGLDPARREALREEILELAEELGLDRDLGEDFEEFLE 552
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.9 bits (67), Expect = 0.53
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 32 AISFRDLLVTLSTLLRGSIYEK----LRWTFKLYDINGDGCISRSELTQIVQAVHELMGR 87
AI R+LL RG E W L D G G + R EL ++ +A+H++ R
Sbjct: 852 AILLRELL------QRGQDLEAPADLAAWLASLGDAAGQGLVERKELDELARAIHKINER 905
>gnl|CDD|107086 PHA01816, PHA01816, hypothetical protein.
Length = 160
Score = 28.5 bits (63), Expect = 1.1
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 44 TLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDF 103
+L+RGS ++KL + ++Y+ N D ++ + A++ L + N + + KE ID
Sbjct: 72 SLVRGSRHKKLNYILEIYNRNDDSNNKNAKKHKY--ALYNLQAKNNNSSMYKYIKE-IDT 128
Query: 104 VFRKLDLNDDGVVTLEE 120
+++++ +D V +++
Sbjct: 129 LYKEIGKSDRPVTNIDD 145
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 26.8 bits (60), Expect = 1.4
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDL 110
Y+++ F+ D +GDG IS E +G+ + + ++ D
Sbjct: 1 YDQI---FRSLDPDGDGLISGDEARPF-------LGKSGLP------RSVLAQIWDLADT 44
Query: 111 NDDGVVTLEEFI 122
+ DG + EEF
Sbjct: 45 DKDGKLDKEEFA 56
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 27.1 bits (61), Expect = 1.8
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 65 GDGC-ISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
GD +S+ EL ++++ + + KNQ D E +D + + LD+N DG V +EF+
Sbjct: 22 GDKDTLSKKELKELLETELPNFL--KNQKD-----PEAVDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins similar
to S100A1. S100A1 is a calcium-binding protein belonging
to a large S100 vertebrate-specific protein family
within the EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately. As
is the case with many other members of S100 protein
family, S100A1 is implicated in intracellular and
extracellular regulatory activities, including
interaction with myosin-associated twitchin kinase,
actin-capping protein CapZ, sinapsin I, and tubulin.
Structural data suggests that S100A1 proteins exist
within cells as antiparallel homodimers, while
heterodimers with S100A4 and S100B also has been
reported. Upon binding calcium S100A1 changes
conformation to expose a hydrophobic cleft which is the
interaction site of S100A1 with its more that 20 known
target proteins.
Length = 92
Score = 26.8 bits (59), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 69 ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
+S+ EL ++Q + A+K + +D + ++LD N DG V +EF+
Sbjct: 28 LSKKELKDLLQ------TELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75
>gnl|CDD|204778 pfam11922, DUF3440, Domain of unknown function (DUF3440). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 53 to 190 amino acids in length. This domain is
found associated with pfam01507. This domain has a
conserved KND sequence motif.
Length = 154
Score = 26.5 bits (59), Expect = 4.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 38 LLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
LL TL R K+ + + + G GC+ E
Sbjct: 74 LLDTLPEETREHYLRKIAVSLQWWRKKGMGCLPDEE 109
>gnl|CDD|223580 COG0506, PutA, Proline dehydrogenase [Amino acid transport and
metabolism].
Length = 391
Score = 26.6 bits (59), Expect = 5.8
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 66 DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQI--DFVFRKLDLNDDGVVTLEEFI- 122
+ +S L+Q+ Q + E + RK +A R E ++DL D L E
Sbjct: 103 NPHLSLK-LSQLGQKLGEPVIRKALDNARRILGEAFVHGITIVEIDLED---NKLTEETL 158
Query: 123 ---ESCLKVSTQLEKSIESCLK 141
E L + ++ LK
Sbjct: 159 GYSEDLLGEAAYTGALAQAYLK 180
>gnl|CDD|233909 TIGR02520, pilus_B_mal_scr, type IVB pilus formation outer membrane
protein, R64 PilN family. Several related protein
families encode outer membrane pore proteins for type II
secretion, type III secretion, and type IV pilus
formation. This protein family appears to encode a
secretin for pilus formation, although it is quite
different from PilQ. Members include the PilN
lipoprotein of the plasmid R64 thin pilus, a type IV
pilus. Scoring between the trusted and noise cutoffs are
examples of bundle-forming pilus B (bfpB) [Cell
envelope, Surface structures, Protein fate, Protein and
peptide secretion and trafficking].
Length = 497
Score = 26.4 bits (58), Expect = 6.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 96 KAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
KA +Q+ L L ++L E +
Sbjct: 17 KAAQQLKLPPCSLTLIIASSLSLSEVAQ 44
>gnl|CDD|214785 smart00718, DM4_12, DM4/DM12 family of domains in Drosophila
melanogaster proteins of unknown function.
Length = 95
Score = 25.4 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 47 RGSIYEKLRWTFKLYDINGDGCISRS--ELTQIVQAVHELMG 86
R +YE L NG C+ R+ E Q + L+G
Sbjct: 6 RRLLYEALENLLDQLGFNGRACLLRAICESAQKLDDHRGLLG 47
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 26.0 bits (58), Expect = 9.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 84 LMGRKNQTDAARKAKEQIDFVFRK 107
L+ KNQ A + ++ F
Sbjct: 239 LLLGKNQKIAVKAQMKKRAPKFLD 262
>gnl|CDD|176478 cd08641, DNA_pol_gammaA, Pol gammaA is a family A polymerase that
is responsible for DNA replication and repair in
mitochondria. DNA polymerase gamma (Pol gamma), 5'-3'
polymerase domain (Pol gammaA). Pol gammaA is a family A
polymerase that is responsible for DNA replication and
repair in mitochondria. Family A polymerase functions
primarily to fill DNA gaps that arise during DNA repair,
recombination and replication. DNA-dependent DNA
polymerases can be classified into six main groups based
upon phylogenetic relationships with E. coli polymerase
I (classA), E. coli polymerase II (class B), E.coli
polymerase III (class C), euryarchaeota polymerase II
(class D), human polymerase beta (class X), E. coli
UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum
variant (class Y). Family A polymerases are found
primarily in organisms related to prokaryotes and
include prokaryotic DNA polymerase I, mitochondrial
polymerase gammaA, and several bacteriophage polymerases
including those from odd-numbered phage (T3, T5, and
T7). The structure of these polymerases resembles in
overall morphology a cupped human right hand, with
fingers (which bind an incoming nucleotide and interact
with the single-stranded template), palm (which harbors
the catalytic amino acid residues and also binds an
incoming dNTP) and thumb (which binds double-stranded
DNA) subdomains. Pol gammaA has also the right hand
configuration. Pol gammaA has both polymerase and
proofreading exonuclease activities separated by a
spacer. Pol gamma holoenzyme is a heterotrimer
containing one Pol gammaA subunit and a dimeric Pol
gammaB subunit. Pol gamma is important for mitochondria
DNA maintenance and mutation of the catalytic subunit of
Pol gamma is implicated in more than 30 human diseases.
Length = 425
Score = 26.1 bits (58), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 54 LRWTFKLYDINGDGCIS 70
+RW + YDI+ CIS
Sbjct: 338 MRWLIEKYDIDARFCIS 354
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,179,904
Number of extensions: 634708
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 68
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)