RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12168
(150 letters)
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 133 bits (337), Expect = 2e-40
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
+N + V+ FD N +G + F + + ++ +++ + +KL+W FKLYD +G+G I ++
Sbjct: 54 KANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKN 113
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132
EL + AV L G++ + +E I+ VF K+D+N+DG +TLEEFI K L
Sbjct: 114 ELLDMFMAVQALNGQQTLSP-----EEFINLVFHKIDINNDGELTLEEFINGMAK-DQDL 167
Query: 133 EKSIESCLKVS 143
+ + S
Sbjct: 168 LEIVYKSFDFS 178
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 123 bits (311), Expect = 1e-36
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
++ Y +F+AFD N + I F + + L+ +LRG++ KL+WTFK+YD + +GCI R
Sbjct: 56 EATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQ 115
Query: 73 ELTQIVQAVHELMGR------KNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126
EL IV+++++L Q +E +D +F +D N DG ++L EF+E
Sbjct: 116 ELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR 175
Query: 127 K 127
+
Sbjct: 176 R 176
Score = 38.3 bits (89), Expect = 3e-04
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLR-----------------GSIYEKLRWTFKLYDIN 64
FK +D + NG I ++LL + ++ + + E + F L D N
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 65 GDGCISRSELTQIVQAVHELM 85
GDG +S +E + + +M
Sbjct: 161 GDGQLSLNEFVEGARRDKWVM 181
Score = 37.5 bits (87), Expect = 5e-04
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++ F + G + E + + +A + ++ +FR D N
Sbjct: 25 QEWYKKFL--EECPSGTLFMHEFKRF-------FKVPDNEEAT----QYVEAMFRAFDTN 71
Query: 112 DDGVVTLEEFI 122
D + E++
Sbjct: 72 GDNTIDFLEYV 82
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 121 bits (305), Expect = 1e-35
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
+N Y +F+ FD N +G I F + + LS +L+G + +KLRW FKLYD++G+GCI R
Sbjct: 49 SANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRG 108
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
EL I++A + N+ + A A+E + VF K+D+N DG ++LEEF+E K
Sbjct: 109 ELLNIIKA----IRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
Score = 38.6 bits (90), Expect = 2e-04
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ F G ++ E Q + + A + ++ +F D N
Sbjct: 17 HQWYKKFM--TECPSGQLTLYEFKQFFG----------LKNLSPSANKYVEQMFETFDFN 64
Query: 112 DDGVVTLEEFI 122
DG + E++
Sbjct: 65 KDGYIDFMEYV 75
Score = 37.1 bits (86), Expect = 8e-04
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLL-------RGSIYEKLRWTFKLYDINGDGCISR 71
+ FK +DV+ NG I +LL + + + E F DINGDG +S
Sbjct: 91 RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSL 150
Query: 72 SELTQIVQAVHELM 85
E + VQ L+
Sbjct: 151 EEFMEGVQKDEVLL 164
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 118 bits (298), Expect = 8e-35
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D +A +VF FD N +G I F + + LS RG++ EKLRW FKLYD++ DG I+R+
Sbjct: 60 DPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRN 119
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQI-DFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ IV A+++++G + E+ D +F +D N DG +TL+EF E
Sbjct: 120 EMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
Score = 37.1 bits (86), Expect = 7e-04
Identities = 13/80 (16%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLR------------GSIYEKLRWTFKLYDING 65
+ FK +D++ +G I+ ++L + + + + +++ F + D N
Sbjct: 101 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNA 160
Query: 66 DGCISRSELTQIVQAVHELM 85
DG ++ E + +A ++
Sbjct: 161 DGKLTLQEFQEGSKADPSIV 180
Score = 31.7 bits (72), Expect = 0.053
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++ F G + + +I + + FVF D N
Sbjct: 28 QQWYKGFI--KDCPSGQLDAAGFQKIYKQFFPF----------GDPTKFATFVFNVFDEN 75
Query: 112 DDGVVTLEEFIESCLKVS 129
DG + EFI++ S
Sbjct: 76 KDGRIEFSEFIQALSVTS 93
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 118 bits (296), Expect = 2e-34
Identities = 41/116 (35%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D++ +A +VF+ FD N +G I FR+ ++ LS RG + +KL+W F +YD++G+G IS++
Sbjct: 60 DASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKA 119
Query: 73 ELTQIVQAVHELMGR-KNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ +IVQA+++++ + +++ + +FR++D N DG ++LEEFI
Sbjct: 120 EMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 36.4 bits (84), Expect = 0.001
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRG------------SIYEKLRWTFKLYDINGD 66
+ F +D++ NG IS ++L + + + + ++ F+ D N D
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRD 161
Query: 67 GCISRSELTQIVQAVHELM 85
G +S E + ++ ++
Sbjct: 162 GKLSLEEFIRGAKSDPSIV 180
Score = 36.0 bits (83), Expect = 0.002
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 12/85 (14%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E W G +S E +I A + + VFR D N
Sbjct: 26 EIQEWYKGFLRDCPSGHLSMEEFKKIYG----------NFFPYGDASKFAEHVFRTFDAN 75
Query: 112 DDGVVTLEEFIE--SCLKVSTQLEK 134
DG + EFI S +K
Sbjct: 76 GDGTIDFREFIIALSVTSRGKLEQK 100
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 119 bits (299), Expect = 2e-34
Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
DS YAH++F AFD + NGA+SF D + LS LLRG++ EKL W F LYDIN DG I++
Sbjct: 99 DSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKE 158
Query: 73 ELTQIVQAVHELMGRKNQTDAA-RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ I++A++++MG+ ++ ++ F+K+D N DGVVT++EFIESC K
Sbjct: 159 EMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 34.5 bits (79), Expect = 0.007
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLR------------GSIYEKLRWTFKLYDINGD 66
++ F +D+N +G I+ ++L + + + + + F+ D N D
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKD 200
Query: 67 GCISRSELTQIVQAVHELM 85
G ++ E + Q +M
Sbjct: 201 GVVTIDEFIESCQKDENIM 219
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 117 bits (294), Expect = 3e-34
Identities = 53/116 (45%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D++ YAHY+F AFD G++ F D + LS LLRG+++EKLRWTF LYDIN DG I++
Sbjct: 53 DASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKE 112
Query: 73 ELTQIVQAVHELMGRKNQTDAA-RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ IV+A++++MG+ ++ +D F+K+D N DG+VTL+EF+ES +
Sbjct: 113 EMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
Score = 35.2 bits (81), Expect = 0.003
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLR------------GSIYEKLRWTFKLYDINGD 66
+ F +D+N +G I+ +++ + + + + + F+ D N D
Sbjct: 95 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 154
Query: 67 GCISRSELTQIVQAVHELM 85
G ++ E + Q +M
Sbjct: 155 GIVTLDEFLESXQEDDNIM 173
Score = 32.5 bits (74), Expect = 0.032
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ L FK + G ++ QI DA+ ++F D
Sbjct: 21 QVLYRGFK--NEXPSGVVNEETFKQI------YAQFFPHGDAS----TYAHYLFNAFDTT 68
Query: 112 DDGVVTLEEFIE--SCLKVSTQLEK 134
G V E+F+ S L T EK
Sbjct: 69 QTGSVKFEDFVTALSILLRGTVHEK 93
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 117 bits (295), Expect = 5e-34
Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D++ YAHY+F AFD G++ F D + LS LLRG+++EKLRWTF LYDIN DG I++
Sbjct: 86 DASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKE 145
Query: 73 ELTQIVQAVHELMGRKNQTDAA-RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ IV+A++++MG+ ++ +D F+K+D N DG+VTL+EF+ESC +
Sbjct: 146 EMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
Score = 36.9 bits (85), Expect = 9e-04
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLR------------GSIYEKLRWTFKLYDINGD 66
+ F +D+N +G I+ +++ + + + + + F+ D N D
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 187
Query: 67 GCISRSELTQIVQAVHELM 85
G ++ E + Q +M
Sbjct: 188 GIVTLDEFLESCQEDDNIM 206
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 116 bits (293), Expect = 6e-34
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D + +A YVF FD + NG I F++ + LS RG + +KL W F+LYD++ +G IS
Sbjct: 60 DPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYD 119
Query: 73 ELTQIVQAVHELMGRKNQTDAAR-KAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ +IV A+++++G + +++++ +F +D N DG +TLEEF E +
Sbjct: 120 EMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 37.1 bits (86), Expect = 6e-04
Identities = 13/79 (16%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRG------------SIYEKLRWTFKLYDINGD 66
+ F+ +D++ NG IS+ ++L + + + + +++ F + D N D
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161
Query: 67 GCISRSELTQIVQAVHELM 85
G ++ E + + ++
Sbjct: 162 GQLTLEEFCEGSKRDPTIV 180
Score = 29.4 bits (66), Expect = 0.35
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E +W + G +++SE +I + ++VF D +
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFG----------DPSAFAEYVFNVFDAD 75
Query: 112 DDGVVTLEEFIE--SCLKVSTQLEK 134
+G + +EFI S +K
Sbjct: 76 KNGYIDFKEFICALSVTSRGELNDK 100
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 116 bits (292), Expect = 9e-34
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISR 71
NL+A +F FDV NG I F + + +L ++EK+++ FKLYD+ G I R
Sbjct: 71 RRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIER 130
Query: 72 SELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
EL ++V A L+ + + +D F + D +DG + ++E+ +
Sbjct: 131 EELKEMVVA---LLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
Score = 42.1 bits (99), Expect = 2e-05
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGS--------IYEKLRWTFKLYDINGDGCIS 70
+ FK +D+ G I +L + LL S I + F D DG I
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
Query: 71 RSELTQIVQAVHELM 85
E V L+
Sbjct: 174 IDEWKDFVSLNPSLI 188
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 116 bits (292), Expect = 1e-33
Identities = 38/140 (27%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D YA +VF++FD N +G + F++ ++ L G +KL W F LYD++G+G IS++
Sbjct: 68 DPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKN 127
Query: 73 ELTQIVQAVHELMGRKNQTDAA---RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129
E+ +IV A+ +++ ++ +++ + +++ NDD +T +EFIE L +
Sbjct: 128 EVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA-N 186
Query: 130 TQLEKSIESCLKVSTQNLRN 149
++ + I+ + + ++N
Sbjct: 187 KEILRLIQFEPQKVKEKMKN 206
Score = 32.6 bits (74), Expect = 0.031
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E W G I++ + I + K VFR D N
Sbjct: 34 ELCSWYQSFLKDCPTGRITQQQFQSIYA----------KFFPDTDPKAYAQHVFRSFDSN 83
Query: 112 DDGVVTLEEFIE--SCLKVSTQLEK 134
DG + +E++ +K
Sbjct: 84 LDGTLDFKEYVIALHMTTAGKTNQK 108
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 117 bits (295), Expect = 1e-33
Identities = 55/116 (47%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
D+ YAH++F AFD + NGAI F D +V LS LLRG+++EKL+W F LYDIN DGCI++
Sbjct: 126 DATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKE 185
Query: 73 ELTQIVQAVHELMGRKNQTDAA-RKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ I+++++++MGR E ++ F+K+D N DGVVT++EF+E+C K
Sbjct: 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
Score = 36.2 bits (83), Expect = 0.002
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRG------------SIYEKLRWTFKLYDINGD 66
+ F +D+N +G I+ ++L + ++ + E + F+ D N D
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD 227
Query: 67 GCISRSELTQIVQAVHELM 85
G ++ E + Q +M
Sbjct: 228 GVVTIDEFLETCQKDENIM 246
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 113 bits (284), Expect = 1e-32
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRS 72
+A+++F FD + NG I F + + LST RG++ EKL W F+LYD+N DG I+
Sbjct: 60 SPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFD 119
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQI-DFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ IV +V+++MG + E +F+ +D N+DG +TL+EF E
Sbjct: 120 EMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
Score = 37.5 bits (87), Expect = 5e-04
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRG------------SIYEKLRWTFKLYDINGD 66
+ F+ +D+N +G I+F ++L ++++ + + +++ FKL D N D
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNED 161
Query: 67 GCISRSELTQIVQAVHELM 85
G I+ E + + ++
Sbjct: 162 GYITLDEFREGSKVDPSII 180
Score = 27.1 bits (60), Expect = 1.9
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 49 SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108
E +W G ++R + +I + ++ + +F
Sbjct: 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPF----------GSPEDFANHLFTVF 72
Query: 109 DLNDDGVVTLEEFIE--SCLKVSTQLEK 134
D +++G + EEFI S T EK
Sbjct: 73 DKDNNGFIHFEEFITVLSTTSRGTLEEK 100
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 113 bits (284), Expect = 3e-32
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCISR 71
+L+A VF FD NG + F + LS I +K+ ++F+LYD+ G I R
Sbjct: 82 KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIER 141
Query: 72 SELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
E+ Q+V A G + ++ ID F + D DG + EE+ L+
Sbjct: 142 QEVKQMVVATLAESGMNLKDTV---IEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
Score = 40.2 bits (94), Expect = 7e-05
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGS--------IYEKLRWTFKLYDINGDGCIS 70
H+ F+ +D+ G I +++ + L S I + + TF+ D DG I
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
Query: 71 RSELTQIVQAVHELM 85
+ E +V L+
Sbjct: 185 KEEWRSLVLRHPSLL 199
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 111 bits (279), Expect = 6e-32
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 13 DSNLYAHYVFKAFDVNC-NGAISFRDLLVTLSTLL-RGSIYEKLRWTFKLYDINGDGCIS 70
+N + + + F + ++SF D L LS + K + F+++D + DG ++
Sbjct: 57 KANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLN 116
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
R +L+++V + + + K+ ID + + D++ DG + L EF +
Sbjct: 117 REDLSRLVNCLTGEGEDTRLSASE--MKQLIDNILEESDIDRDGTINLSEFQHVISR 171
Score = 47.1 bits (112), Expect = 2e-07
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLR---------WTFKLYDINGDGC 68
+HY F+ FD + +G ++ DL ++ L +L + DI+ DG
Sbjct: 100 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 159
Query: 69 ISRSELTQIVQAVHELM 85
I+ SE ++ +
Sbjct: 160 INLSEFQHVISRSPDFA 176
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 104 bits (261), Expect = 6e-29
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 13 DSNLYAHYVFKAFDVNC-NGAISFRDLLVTLSTL-LRGSIYEKLRWTFKLYDINGDGCIS 70
+N + + + F + ++SF D L LS + K + F+++D + DG ++
Sbjct: 88 KANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLN 147
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
R +L+++V + + + K+ ID + + D++ DG + L EF +
Sbjct: 148 REDLSRLVNCLTGEGEDTRLSASE--MKQLIDNILEESDIDRDGTINLSEFQHVISR 202
Score = 47.9 bits (114), Expect = 1e-07
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKL---------RWTFKLYDINGDGC 68
+HY F+ FD + +G ++ DL ++ L +L + DI+ DG
Sbjct: 131 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 190
Query: 69 ISRSELTQIVQAVHELM 85
I+ SE ++ +
Sbjct: 191 INLSEFQHVISRSPDFA 207
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 96.0 bits (239), Expect = 9e-26
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 13 DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL----------------RGSIYEKLRW 56
N + AF ++FR + TL+ S KL +
Sbjct: 58 AINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHF 117
Query: 57 TFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVV 116
F+LYD++ D ISR EL Q+++ M N +D + D ++ D + D +
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLRM----MVGVNISD--EQLGSIADRTIQEADQDGDSAI 171
Query: 117 TLEEFIESCLKVSTQLEKSI 136
+ EF++ KV + + SI
Sbjct: 172 SFTEFVKVLEKVDVEQKMSI 191
Score = 35.5 bits (82), Expect = 0.003
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+L F D +G +SR + +I + N D +
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRIPE------LAINPL---------GDRIINAFFSE 73
Query: 112 DDGVVTLEEFIESC 125
+ V F+ +
Sbjct: 74 GEDQVNFRGFMRTL 87
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 79.4 bits (196), Expect = 2e-19
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-----------------RGSIYEKLRW 56
N + ++F + + + F + L+ S KL +
Sbjct: 59 VNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHY 118
Query: 57 TFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVV 116
F+LYD++ DG ISR E+ Q+++ M T+ + D ++ D + DG V
Sbjct: 119 AFQLYDLDRDGKISRHEMLQVLRL----MVGVQVTEEQL--ENIADRTVQEADEDGDGAV 172
Query: 117 TLEEFIE 123
+ EF +
Sbjct: 173 SFVEFTK 179
Score = 41.7 bits (98), Expect = 2e-05
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK-----LRWTFKLYDINGDGCISRSE 73
HY F+ +D++ +G IS ++L L ++ + E+ T + D +GDG +S E
Sbjct: 117 HYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE 176
Query: 74 LTQIVQ 79
T+ ++
Sbjct: 177 FTKSLE 182
Score = 39.4 bits (92), Expect = 1e-04
Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
H+ F+A D N G +S DL + L + +++ + + +G + +++
Sbjct: 32 HHRFRALDRNKKGYLSRMDLQ-QIGALAVNPLGDRI---IESFFPDGSQRVDFPGFVRVL 87
Query: 79 QAVHELMGRKNQTDAARKAK------EQIDFVFRKLDLNDDGVVTLEEF 121
+ +T +K + ++ + F+ DL+ DG ++ E
Sbjct: 88 AHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEM 136
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 15/72 (20%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+L F+ D N G +SR +L QI N D + +
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMDLQQI------GALAVNPL---------GDRIIESFFPD 73
Query: 112 DDGVVTLEEFIE 123
V F+
Sbjct: 74 GSQRVDFPGFVR 85
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 74.2 bits (182), Expect = 2e-18
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELM-GRKNQTDAARKAKEQI----DFVFRKL 108
+ F L+DIN DG + EL + E + KN+ D R+ +E+ + V + +
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNV 81
Query: 109 DLNDDGVVTLEEFIESCLK 127
D N D +VTLEEF+ S +
Sbjct: 82 DTNQDRLVTLEEFLASTQR 100
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 77.4 bits (190), Expect = 4e-18
Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISR 71
++ +++ +D G I + +L + + +K R+ FK + G +
Sbjct: 128 LCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQ 186
Query: 72 SELTQIVQAVHELMGRKNQTDA--ARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
L ++ ++ + + + + + F+ N+ + F++
Sbjct: 187 RRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQF--ANNKPEIEAALFLDWMRL 242
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 72.6 bits (179), Expect = 3e-17
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 4 VTSKE-GVIR--DSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL-RGSIYEKLRWTFK 59
++ +E + N V FD + NG + F++ + +S +G +KLR+ F+
Sbjct: 23 LSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFR 82
Query: 60 LYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLE 119
+YD++ DG IS EL Q+++ M N D ++ +D D + DG ++ E
Sbjct: 83 IYDMDKDGYISNGELFQVLKM----MVGNNLKDTQL--QQIVDKTIINADKDGDGRISFE 136
Query: 120 EFIESCLKVSTQLEKSIE 137
EF + + ++
Sbjct: 137 EFCAVVGGLDIHKKMVVD 154
Score = 35.3 bits (82), Expect = 0.002
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 28/95 (29%)
Query: 52 EKLRWTFKLYDINGDGCISRSEL------------TQIVQAVHE-------------LMG 86
++L FK D++ G +S E +++ +
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVS 65
Query: 87 RKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + ++++ F FR D++ DG ++ E
Sbjct: 66 QFSV---KGDKEQKLRFAFRIYDMDKDGYISNGEL 97
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 71.9 bits (176), Expect = 5e-17
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKN-QTDAARKAKEQIDFVFRKLDL 110
E FK++D +G+ + EL+ + VH+ G + + + ID V R D
Sbjct: 68 ELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDK 127
Query: 111 NDDGVVTLEEFIES 124
N+DG + EF +S
Sbjct: 128 NNDGYIDYAEFAKS 141
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 65.9 bits (161), Expect = 2e-14
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK-------LRWTFKLYDINGDGCISRSE 73
V + IS + V + L E+ + D + DG +S E
Sbjct: 64 VADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPE 123
Query: 74 LTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+QAV + TD ++ F LD N +G ++ +EF+
Sbjct: 124 FKAFLQAVGP-----DLTD------DKAITCFNTLDFNKNGQISRDEFLV 162
Score = 60.9 bits (148), Expect = 2e-12
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
K++ + D+ GDG ISR + I + ++ + A + +++ V +L L
Sbjct: 14 RKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLS--AEKAEETRQEFLRVADQLGLA 71
Query: 112 DDGVVTLEEFIE 123
+++EE
Sbjct: 72 PGVRISVEEAAV 83
Score = 58.6 bits (142), Expect = 1e-11
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGS---------IYEKLRWTFKLYDINGDGCI 69
+ DV +G IS D + + + + ++ + I
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI 76
Query: 70 SRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
S E + + K + + A Q ++ +D + DG V+L EF
Sbjct: 77 SVEE---AAVNATDSL-LKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEF 124
Score = 48.2 bits (115), Expect = 9e-08
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 16 LYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELT 75
+ + ++ D + +G +S + L + +K F D N +G ISR E
Sbjct: 102 IQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFL 161
Query: 76 QIVQ 79
V
Sbjct: 162 VTVN 165
Score = 28.6 bits (64), Expect = 0.59
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIE 123
++ +++D+ DG ++ E++
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYEL 38
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 64.0 bits (156), Expect = 9e-14
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 18/116 (15%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLR-------GSIYEKLRWTFKLY--------DING 65
F +D + NGA+ D + + + L+ F +
Sbjct: 12 RFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGS 71
Query: 66 DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
DG ++ + ++ L+ + + R + + D N DG + +EF
Sbjct: 72 DGSLTEEQF---IRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEF 124
Score = 61.7 bits (150), Expect = 7e-13
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 21/115 (18%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK--------LRWTFKLYDINGDGC 68
Y+ K V +G+++ + L+ ++ + D N DG
Sbjct: 59 LFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQ 118
Query: 69 ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
I+ E + + + F ++D N +G ++L+E +
Sbjct: 119 INADEFAA-------WLTALGMSK------AEAAEAFNQVDTNGNGELSLDELLT 160
Score = 60.9 bits (148), Expect = 1e-12
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQI----DFVFRK 107
++L+ F +D +G+G + R++ + Q + E G+ + K D++ ++
Sbjct: 7 DRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE 66
Query: 108 LDLNDDGVVTLEEFIESCLK 127
+ DG +T E+FI
Sbjct: 67 AGVGSDGSLTEEQFIRVTEN 86
Score = 44.7 bits (106), Expect = 1e-06
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 1 MSNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKL 60
+ + R + D N +G I+ + L+ L G + F
Sbjct: 87 LIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQ 144
Query: 61 YDINGDGCISRSELTQIVQA 80
D NG+G +S EL V+
Sbjct: 145 VDTNGNGELSLDELLTAVRD 164
Score = 28.6 bits (64), Expect = 0.58
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 97 AKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIES 138
A +++ F + D + +G + +F + ++ K +
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGA 46
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 62.6 bits (152), Expect = 5e-13
Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 24 AFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83
+ G+ F + L L + +L F D +G+ + E +
Sbjct: 102 GSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEF----KRAVP 157
Query: 84 LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVS 143
+ E +F++LD N G VT +EF V + ++ + +
Sbjct: 158 KLEAWGAKV------EDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPDNVPESA 211
Query: 144 TQNLRN 149
++ +
Sbjct: 212 LEHHHH 217
Score = 45.7 bits (108), Expect = 9e-07
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK----------LRWTFKLYDINGDGCIS 70
+FK FD N G + + ++ +L+ + + + G
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC 125
E E ++ +F ++D + + +V EEF +
Sbjct: 113 FVEF-------LEFRLMLCYIY----DFFELTVMFDEIDASGNMLVDEEEFKRAV 156
Score = 44.9 bits (106), Expect = 2e-06
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKA--KEQIDFVFRKLD 109
++ FK +D N G + E+ E++ T R +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVY---SGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSK 104
Query: 110 LNDDGVVTLEEFIESCLKVS 129
L + G EF+E L +
Sbjct: 105 LENKGSEDFVEFLEFRLMLC 124
Score = 30.6 bits (69), Expect = 0.15
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIE 137
K++ +F+K D N+ G + +E CL+V E +
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSR 86
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 62.0 bits (151), Expect = 5e-13
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGS-----IYEKLR------WTFKLYDINGDGCI 69
F D + +GAI+ D + S + L W L + G I
Sbjct: 11 YFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGI 70
Query: 70 SRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ ++ + +A + + FR +D N+D ++ +E+
Sbjct: 71 DETTF------INSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEY 116
Score = 59.0 bits (143), Expect = 7e-12
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEK-----LRWTFKLYDINGDGCISRSELTQIVQA 80
V I + ++ +++ + L F+ D N D ISR E
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI---- 118
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G F +D N+DG+++LEEF+
Sbjct: 119 ---FFGMLGLDK------TMAPASFDAIDTNNDGLLSLEEFVI 152
Score = 57.0 bits (138), Expect = 3e-11
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL--D 109
+K++ F D + DG I+R + + + + K + A+ + + V+
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMK--AEHAKVLMDSLTGVWDNFLTA 63
Query: 110 LNDDGVVTLEEFIESCLKV 128
+ + FI S ++
Sbjct: 64 VAGGKGIDETTFINSMKEM 82
Score = 44.3 bits (105), Expect = 2e-06
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
F+A D N + IS + + L G +F D N DG +S E
Sbjct: 95 PLPLFFRAVDTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
Query: 77 IV 78
Sbjct: 153 AG 154
Score = 30.5 bits (69), Expect = 0.12
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIE 137
+++ F ++D + DG +T +F + + + E E
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAE 44
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 62.1 bits (151), Expect = 7e-13
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRG---------SIYEKLRWTFKLYDINGDGCISR 71
F FD++ +G + ++L + + + + +R F + + R
Sbjct: 41 RFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLR 100
Query: 72 SELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + + E + + + + LD + DG V ++E
Sbjct: 101 EDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDEL 150
Score = 60.2 bits (146), Expect = 4e-12
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+L F +D++ DG + E+ + +L+ + K ++ + F +
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNAT--DEQVEKMRDAVRVFFLHKGVE 93
Query: 112 DDGVVTLEEFIE 123
+ E+++E
Sbjct: 94 PVNGLLREDWVE 105
Score = 58.3 bits (141), Expect = 2e-11
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 24/114 (21%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRG-----------SIYEKLRWTFKLYDINGDGCI 69
F V + D + I + + D +GDG +
Sbjct: 86 FFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTV 145
Query: 70 SRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
EL + M + E F K D + G + E +
Sbjct: 146 DVDELKTM-------MKAFDVPQ------EAAYTFFEKADTDKSGKLERTELVH 186
Score = 42.1 bits (99), Expect = 2e-05
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
+ D + +G + +L + E F+ D + G + R+EL + +
Sbjct: 133 YYDVLDDDGDGTVDVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 62.2 bits (151), Expect = 7e-13
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGS---------IYEKLRWTFKLYDINGDGCISRS 72
K D N + ++ + L + ++ + + + + F + D +GD I +
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E + + + K D F L +VT E F
Sbjct: 130 EYSTVYMSYG-------------IPKSDCDAAFDTLSDGGKTMVTREIFAR 167
Score = 55.6 bits (134), Expect = 2e-10
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 19 HYVFKA-FDVNCNGAISFRDLLVTLSTL---------------LRGSIYEKLRWTFKLYD 62
VF +D N +G I + D + + + R ++ K D
Sbjct: 15 LRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYAD 74
Query: 63 INGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
N D +++ E ++ + + + ++F+F D + D ++ E+
Sbjct: 75 ENEDEQVTKEEWLKMWA--ECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEY 131
Score = 53.7 bits (129), Expect = 8e-10
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 52 EKLRWTFK-LYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL-- 108
K+ F YD N DG I + ++ + L +A+ + ++ L
Sbjct: 12 NKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRK 71
Query: 109 --DLNDDGVVTLEEFIE 123
D N+D VT EE+++
Sbjct: 72 YADENEDEQVTKEEWLK 88
Score = 47.5 bits (113), Expect = 1e-07
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 1 MSNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKL 60
+ +V E + Y +++F D + + I + + G F
Sbjct: 94 VKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY--GIPKSDCDAAFDT 151
Query: 61 YDINGDGCISRSELTQIVQ 79
G ++R ++
Sbjct: 152 LSDGGKTMVTREIFARLWT 170
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 62.6 bits (152), Expect = 9e-13
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEK---------LRWTFKLYDINGDGCISRSE 73
+ +G I +L L T + + T++ YD + G I E
Sbjct: 65 DQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEE 124
Query: 74 LTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
L + +L+ + N+T K E D + + D N+DG + L E
Sbjct: 125 L---KNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMA 170
Score = 54.1 bits (130), Expect = 1e-09
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRG--------SIYEKLRWTFKLYDINGDGCISRS 72
++ +D + +G I +L L LL + E KL+D N DG + +
Sbjct: 108 TWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
E+ +++ + + ++ + F D + +G + E
Sbjct: 168 EMARLLPVQ---ENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL 213
Score = 52.6 bits (126), Expect = 4e-09
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIY--------EKLRWTFKLYDINGDGC 68
Y + K FD N +G + ++ L + ++ F+LYD +G+G
Sbjct: 148 YTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGY 207
Query: 69 ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
I +EL +++ + E ++ + K+ I + L+D G + +
Sbjct: 208 IDENELDALLKDLCEKNKQELDINNISTYKKNI------MALSDGGKLYRTDL 254
Score = 51.4 bits (123), Expect = 9e-09
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLL------RGSIYEKLRWTFKLYDINGDGCISRSEL 74
++ FD + +G + ++L + LL + +++ Y DG I EL
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVEL 80
Query: 75 TQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
++ + K+ E+ +RK D + G + EE
Sbjct: 81 AHVLPTEENFLLLFRCQQ--LKSCEEFMKTWRKYDTDHSGFIETEEL 125
Score = 46.0 bits (109), Expect = 7e-07
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + +D +G G + EL ++Q + + + A + ++ +
Sbjct: 16 SQFFEIWLHFDADGSGYLEGKELQNLIQE----LL-QARKKAGLELSPEMKTFVDQYGQR 70
Query: 112 DDGVVTLEEFIE 123
DDG + + E
Sbjct: 71 DDGKIGIVELAH 82
Score = 35.2 bits (81), Expect = 0.004
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKL-----RWTFKLYDINGDGCISRSELT 75
F+ +D + NG I +L L L + E + + ++ G + R++L
Sbjct: 196 AFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLA 255
Query: 76 QIVQA 80
I+ A
Sbjct: 256 LILSA 260
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 62.0 bits (150), Expect = 2e-12
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIY-----------EKLRWTFKLYDINGDGCI 69
A+D +G + +L + + + ++ YD + G I
Sbjct: 62 FMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYI 121
Query: 70 SRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
S +EL + +L + + K E D + + D N DG + L +
Sbjct: 122 SAAELKN---FLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLA 171
Score = 56.2 bits (135), Expect = 2e-10
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRG----------SIYEKLRWTFKLYDINGDGCIS 70
+++ FD + NG I ++L +L+ + + + YD DG +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
EL ++ E + +A + ++RK D + G ++ E
Sbjct: 76 IEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAEL 126
Score = 54.3 bits (130), Expect = 1e-09
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGS--------IYEKLRWTFKLYDINGDGCISRS 72
+++ +D + +G IS +L L L + E K++D N DG + +
Sbjct: 109 IWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Query: 73 ELTQIVQAVH-ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQ 131
+L +I+ L+ K + + K + +F D++ G + E +
Sbjct: 169 DLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMEL 228
Query: 132 LEKSIE 137
+ SI
Sbjct: 229 VRPSIS 234
Score = 52.4 bits (125), Expect = 5e-09
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIY------------EKLRWTFKLYDINGDGC 68
+ K FD N +G + DL L+ + F YD++ G
Sbjct: 153 MMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGA 212
Query: 69 ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128
+ E+ V+ ++M + + + + + D+N DG + E CL +
Sbjct: 213 LEGPEVDGFVK---DMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSEL-ALCLGL 268
Score = 45.4 bits (107), Expect = 1e-06
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++ +D + +G I EL + + + + K + ++ D
Sbjct: 11 AGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPK-DKITDERVQQIKKSFMSAYDAT 69
Query: 112 DDGVVTLEEFIE 123
DG + +EE
Sbjct: 70 FDGRLQIEELAN 81
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 60.5 bits (147), Expect = 2e-12
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL--- 108
++ F +D +G+G I RS+ + +A+ G ++D + + +++ L
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 109 -DLNDDGVVTLEEFIE 123
D + D +T EEF+
Sbjct: 64 ADRDGDQRITREEFVT 79
Score = 58.6 bits (142), Expect = 7e-12
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL---------------LRGSIYEKLRWTFKLYDING 65
F FD + NG I D + L G + + D +G
Sbjct: 9 RFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG 68
Query: 66 DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
D I+R E V + + R A A+ + D + DG VT+ +
Sbjct: 69 DQRITREEF---VTGAVKRL-RDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Score = 57.8 bits (140), Expect = 1e-11
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGS-------IYEKLRWTFKLYDINGDGCISRSEL 74
D + + I+ + + LR L + D +GDG ++ ++
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 75 TQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ + + + LD + DG V E +
Sbjct: 121 ARA-------LTAFGVPE------DLARQAAAALDTDGDGKVGETEIVP 156
Score = 45.1 bits (107), Expect = 7e-07
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
+ H D + +GA++ D L+ G + R D +GDG + +E+
Sbjct: 99 FLHAALGVADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEIVP 156
Query: 77 IVQA 80
Sbjct: 157 AFAR 160
Score = 28.9 bits (65), Expect = 0.48
Identities = 6/50 (12%), Positives = 17/50 (34%)
Query: 97 AKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVSTQN 146
+ +I F D + +G + +F + + + + S +
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYG 51
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 60.8 bits (148), Expect = 2e-12
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
++ D + NG I + + + E+L F+ +D +G G I+ EL ++
Sbjct: 93 LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRL---- 148
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G D E V ++ D N+DG V EEF+E
Sbjct: 149 ---FGVTEVDD------ETWHQVLQECDKNNDGEVDFEEFVE 181
Score = 53.8 bits (130), Expect = 6e-10
Identities = 18/83 (21%), Positives = 40/83 (48%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++L F+ D NGDG + R EL + + + + G + + + ++D + + +D +
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFD 99
Query: 112 DDGVVTLEEFIESCLKVSTQLEK 134
+G + EF+ C+ L +
Sbjct: 100 RNGYIEYSEFVTVCMDKQLLLSR 122
Score = 47.3 bits (113), Expect = 2e-07
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 24/113 (21%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIY-----------EKLRWTFKLYDINGDGCI 69
+F+ D N +G + ++L+ L++ ++ + D + +G I
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
Query: 70 SRSE-LTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
SE +T + K ++E++ F++ D + G +T EE
Sbjct: 105 EYSEFVT--------VCMDKQLLL----SRERLLAAFQQFDSDGSGKITNEEL 145
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 104 VFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIES 138
+FR+LD N DG + +E IE K+ ++
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSD 79
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 56.0 bits (136), Expect = 9e-12
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+FK DVN +GA+S+ ++ +S + L+ FK D +G+G I ++E + +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Query: 81 V 81
+
Sbjct: 65 I 65
Score = 47.6 bits (114), Expect = 2e-08
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
FK D+NGDG +S E+ V + ++ + +F+ +D + +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIK-----------NEQLLQLIFKSIDADGN 50
Query: 114 GVVTLEEFIE 123
G + EF +
Sbjct: 51 GEIDQNEFAK 60
Score = 31.0 bits (71), Expect = 0.029
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 104 VFRKLDLNDDGVVTLEEFIESCLKVSTQL 132
+F+++D+N DG V+ EE K
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIK 33
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 58.8 bits (142), Expect = 1e-11
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 19 HYVFKAF-DVNCNGAISFRDLLVTLSTL---------------LRGSIYEKLRWTFKLYD 62
+ F F D+N +G+I D ++ ++ S+ ++ R D
Sbjct: 11 KFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRAD 70
Query: 63 INGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
IN D +S E + + + K+ D + +I F+F+ +D++ DG+V LEEF
Sbjct: 71 INKDDVVSWEEYLAMWE--KTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ 128
Query: 123 ESC 125
C
Sbjct: 129 NYC 131
Score = 54.5 bits (131), Expect = 4e-10
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 52 EKLRWTFK-LYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL-- 108
+K+++TF D+N DG I ++ ++ E+ + + ++ +R L
Sbjct: 8 QKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKG 67
Query: 109 --DLNDDGVVTLEEFIE 123
D+N D VV+ EE++
Sbjct: 68 RADINKDDVVSWEEYLA 84
Score = 54.2 bits (130), Expect = 6e-10
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 22/113 (19%)
Query: 20 YVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK---------LRWTFKLYDINGDGCIS 70
+ D+N + +S+ + L + + + FK D++GDG +
Sbjct: 64 DLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVD 123
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E + + V+ + L + E
Sbjct: 124 LEEFQNYCKNFQL-------------QCADVPAVYNVITDGGKVTFDLNRYKE 163
Score = 45.3 bits (107), Expect = 1e-06
Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 1 MSNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKL 60
++ S + ++FK DV+ +G + + + + +
Sbjct: 90 IATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNF--QLQCADVPAVYNV 147
Query: 61 YDINGDGCISRSELTQIVQAVHELMG 86
G + + + L+
Sbjct: 148 ITDGGKVTFDLNR---YKELYYRLLT 170
Score = 27.6 bits (61), Expect = 1.3
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 98 KEQIDFVFRK-LDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVSTQNL 147
K++I F F LD+N DG + +F + + + S+ S Q
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQAS 57
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 58.9 bits (143), Expect = 1e-11
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
V + +D N +G + + L L + + + F D +GDG ++ +L +
Sbjct: 78 VCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSG 137
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLND-DGVVTLEEFIESCLKVSTQLE 133
R + E + D ++ DG VTL EF + VS +
Sbjct: 138 RAHPKVRSGEWT----EDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMN 187
Score = 50.0 bits (120), Expect = 2e-08
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK--LRWTFKLYDINGDGCISRSELTQIV 78
F+ D + + ++ + L+ L G + ++ + +D NG G + E +
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKL--GLVLDQAEAEGVCRKWDRNGSGTLDLEEF---L 96
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+A+ M + + I F KLD + DGVVT+++
Sbjct: 97 RALRPPMSQAR--------EAVIAAAFAKLDRSGDGVVTVDDL 131
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ L F+ D +G + E Q + + ++ + + + V RK D N
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVL-----------DQAEAEGVCRKWDRN 85
Query: 112 DDGVVTLEEFIE 123
G + LEEF+
Sbjct: 86 GSGTLDLEEFLR 97
Score = 31.2 bits (71), Expect = 0.089
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 67 GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDF--VFRKLDLNDDGVVTLEEFIES 124
G + R L + AV M + +R A FR+LD + + +EF +
Sbjct: 3 GLVPRGPLGSHMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQG 62
Query: 125 CLKVSTQLEKS 135
K+ L+++
Sbjct: 63 LAKLGLVLDQA 73
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 59.8 bits (145), Expect = 1e-11
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+F + + G +S+ L+ + L L F+ D N +G +SR E +
Sbjct: 163 LFVMVENDTKGRMSYITLVAVANDL------AALVADFRKIDTNSNGTLSRKEFREHFVR 216
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129
+ K D +FR D ++ V E++ L +
Sbjct: 217 LGF------------DKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL 253
Score = 58.7 bits (142), Expect = 3e-11
Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+F+ D + + + F + + L LR + D + G +S+ E+ ++++
Sbjct: 228 LFRYADEDESDDVGFSEYVHLGLCL------LVLRILYAFADFDKSGQLSKEEVQKVLED 281
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
++ + F +D++D ++ +EF+ L
Sbjct: 282 ----AHIPESAR------KKFEHQFSVVDVDDSKSLSYQEFVMLVLL 318
Score = 52.5 bits (126), Expect = 5e-09
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+F + V+ +G SF+DL L+ L+ F + + + G +S L +
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND 186
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIE 137
+ L FRK+D N +G ++ +EF E +++ + +
Sbjct: 187 LAAL----------VAD-------FRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQD 226
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 57.2 bits (139), Expect = 2e-11
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIY---EKLRWTFKLYDINGDGCISRSELTQIV 78
FK+ D + NG I + ++ + L+ +KL D++GDG +++ E+T
Sbjct: 42 FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF 101
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ E++ K D N DG +TLEEF+E
Sbjct: 102 KKHGI---------------EKVAEQVMKADANGDGYITLEEFLE 131
Score = 47.9 bits (115), Expect = 4e-08
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+FK DVN +GA+S+ ++ +S + L+ FK D +G+G I ++E
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA----- 59
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEE 120
+ G D + K + +++ +D++ DG +T EE
Sbjct: 60 --KFYGSIQGQDLSDD-KIGLKVLYKLMDVDGDGKLTKEE 96
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
FK D+NGDG +S E+ V K ++ + +F+ +D + +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSK----KRAI-------KNEQLLQLIFKSIDADGN 50
Query: 114 GVVTLEEFIE 123
G + EF +
Sbjct: 51 GEIDQNEFAK 60
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 58.0 bits (141), Expect = 2e-11
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D + +G I + + + + S + + F+++D++ DG I+ +EL I+
Sbjct: 93 LDQIDSDGSGKIDYTEFIAAALDRKQLSK-KLIYCAFRVFDVDNDGEITTAELAHILYNG 151
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
++ + ++ + R +D N+DG + EF E
Sbjct: 152 NKKGNITQRDV------NRVKRMIRDVDKNNDGKIDFHEFSE 187
Score = 47.6 bits (114), Expect = 1e-07
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
EKL+ TF + D +G G I++ +L + ++ K D + ++D +
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQLKKGLEKDGL------------KLPYNFDLLLDQIDSD 99
Query: 112 DDGVVTLEEFIESCLKVSTQLEKSIESCLKV 142
G + EFI + L +K I +V
Sbjct: 100 GSGKIDYTEFIAAALDRKQLSKKLIYCAFRV 130
Score = 45.3 bits (108), Expect = 8e-07
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE-LTQIVQ 79
F D + G I+ L L + D +G G I +E +
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEK-DGLKLPYNFDLLLDQIDSDGSGKIDYTEFIA---- 111
Query: 80 AVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ Q K+ I FR D+++DG +T E
Sbjct: 112 ----AALDRKQLS-----KKLIYCAFRVFDVDNDGEITTAEL 144
Score = 33.0 bits (76), Expect = 0.017
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTL-----LRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
F+ FDV+ +G I+ +L L + +++ + D N DG I E ++
Sbjct: 128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
Query: 77 IVQ 79
+++
Sbjct: 188 MMK 190
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 58.1 bits (141), Expect = 2e-11
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
+D N +G I+F + + +R F+ D +GDG + +E+ + +
Sbjct: 70 HMYDKNHSGEITFDEFKDLHHFI------LSMREGFRKRDSSGDGRLDSNEVRAALLSSG 123
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128
++ + + RK D G + ++++E + V
Sbjct: 124 Y-----QVSE------QTFQALMRKFDRQRRGSLGFDDYVELSIFV 158
Score = 43.4 bits (103), Expect = 5e-06
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 25/111 (22%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL---LRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
F+ D + +G + ++ L + + ++ L + +D G + + ++
Sbjct: 98 GFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQAL---MRKFDRQRRGSLGFDDYVEL 154
Query: 78 VQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTL--EEFIESCL 126
V + + F D G VT + FI +
Sbjct: 155 SIFVCRV------RNV-----------FAFYDRERTGQVTFTFDTFIGGSV 188
Score = 33.0 bits (76), Expect = 0.021
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++L F+ D +G G IS EL + + + + D N
Sbjct: 27 QELMEWFRAVDTDGSGAISVPELNAA-------LSSAGV----PFSLATTEKLLHMYDKN 75
Query: 112 DDGVVTLEEFIE 123
G +T +EF +
Sbjct: 76 HSGEITFDEFKD 87
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 57.4 bits (138), Expect = 3e-11
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 6/128 (4%)
Query: 11 IRDSNLYAHYVFKA---FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDG 67
+ S+ +A +F + ++ +L L +LR F + D N DG
Sbjct: 54 MDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADG 113
Query: 68 CISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
++ E+ +I+ + +A E + +LD + G + +E+ L+
Sbjct: 114 RLTAEEVKEIIALSASANKLSKIKE---RADEYTALIMEELDPTNLGYIEMEDLEALLLQ 170
Query: 128 VSTQLEKS 135
++
Sbjct: 171 SPSEAAAR 178
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 55.1 bits (133), Expect = 3e-11
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+LR F D N G + R E L + VF++LD +
Sbjct: 27 ARLRSVFAACDANRSGRLEREEFRA-------LCTELRVRP------ADAEAVFQRLDAD 73
Query: 112 DDGVVTLEEFIE 123
DG +T +EF
Sbjct: 74 RDGAITFQEFAR 85
Score = 38.1 bits (89), Expect = 1e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
VF A D N +G + + + L F+ D + DG I+ E +
Sbjct: 32 VFAACDANRSGRLEREEFRALCTEL--RVRPADAEAVFQRLDADRDGAITFQEFARGFLG 89
Score = 25.8 bits (57), Expect = 3.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 104 VFRKLDLNDDGVVTLEEFIESC 125
VF D N G + EEF C
Sbjct: 32 VFAACDANRSGRLEREEFRALC 53
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 56.8 bits (138), Expect = 7e-11
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
V + D N +G I + D L E FK +DI+G+G IS EL +I
Sbjct: 98 VLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRI--- 154
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
GR + + + ID + +++DLN DG + EF+
Sbjct: 155 ----FGRDDIEN--PLIDKAIDSLLQEVDLNGDGEIDFHEFML 191
Score = 46.8 bits (112), Expect = 2e-07
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE-LTQIVQA 80
F A DV+ +G +S +++L L + I + + D N G I ++ L
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLA----- 117
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
K KE F+ D++ +G +++EE
Sbjct: 118 ---ATIDKQTYL----KKEVCLIPFKFFDIDGNGKISVEEL 151
Score = 43.3 bits (103), Expect = 5e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
LR F D++ G +S E+ ++ +G + K I V R +D N
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEILDGLKK----IGYQ-------KIPPDIHQVLRDIDSN 105
Query: 112 DDGVVTLEEFIESCLKVSTQLEK 134
G + +F+ + + T L+K
Sbjct: 106 ASGQIHYTDFLAATIDKQTYLKK 128
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 54.4 bits (131), Expect = 1e-10
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 32 AISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQT 91
A + RD+L L + Y + F+ +D ISR E I +++ T
Sbjct: 5 ATADRDILARLHKAVTSH-YHAITQEFENFDTMKTNTISREEFRAICNRRVQIL-----T 58
Query: 92 DAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
D EQ D ++ ++ +N G + +F+
Sbjct: 59 D------EQFDRLWNEMPVNAKGRLKYPDFLS 84
Score = 35.9 bits (83), Expect = 7e-04
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
F+ FD IS + + ++ E+ + +N G + +
Sbjct: 30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Score = 26.3 bits (58), Expect = 2.7
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 105 FRKLDLNDDGVVTLEEFIESCLKVSTQL 132
F D ++ EEF C + L
Sbjct: 30 FENFDTMKTNTISREEFRAICNRRVQIL 57
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 56.6 bits (137), Expect = 2e-10
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++L FK D NGDG + + EL ++ + L KN+ + +E++D + +++D +
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKEL---IEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD 411
Query: 112 DDGVVTLEEFIESCL 126
+G + EFI C+
Sbjct: 412 KNGYIEYSEFISVCM 426
Score = 55.1 bits (133), Expect = 7e-10
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 21 VFKAFDVNCNGAISFRD-LLVTLSTLLRGSIYE-KLRWTFKLYDINGDGCISRSELTQIV 78
+ K D + NG I + + + V + + E +LR F L+D + G I++ EL +
Sbjct: 404 ILKEVDFDKNGYIEYSEFISVCMD--KQILFSEERLRRAFNLFDTDKSGKITKEELANL- 460
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G + ++ + + V + D N D ++ +EF+
Sbjct: 461 ------FGLTSISE------KTWNDVLGEADQNKDNMIDFDEFVS 493
Score = 43.9 bits (104), Expect = 5e-06
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEK--------LRWTFKLYDINGDGCISRS 72
+FK D N +G + ++L+ + L + K D + +G I S
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132
E I + + + ++ E++ F D + G +T EE + + +++
Sbjct: 420 EF--ISVCMDK---QILFSE------ERLRRAFNLFDTDKSGKITKEE-LANLFGLTSIS 467
Query: 133 EKSIESCLK 141
EK+ L
Sbjct: 468 EKTWNDVLG 476
Score = 33.5 bits (77), Expect = 0.016
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 6 SKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65
K+ + + L F FD + +G I+ +L L + D N
Sbjct: 427 DKQILFSEERLRR--AFNLFDTDKSGKITKEELANLFG--LTSISEKTWNDVLGEADQNK 482
Query: 66 DGCISRSELTQIVQAV 81
D I E ++ +
Sbjct: 483 DNMIDFDEFVSMMHKI 498
Score = 30.8 bits (70), Expect = 0.15
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIE 123
++++ +F+KLD N DG + +E IE
Sbjct: 354 RKELTDIFKKLDKNGDGQLDKKELIE 379
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 56.6 bits (137), Expect = 2e-10
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++L F D NGDG + R+EL + + + + G+ A + ++D V +D +
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFD 394
Query: 112 DDGVVTLEEFIESCL 126
+G + EF+ +
Sbjct: 395 KNGYIEYSEFVTVAM 409
Score = 55.5 bits (134), Expect = 5e-10
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRW--TFKLYDINGDGCISRSELTQIV 78
V A D + NG I + + + + R ++ + R F+++D + G IS +EL I
Sbjct: 387 VLDAVDFDKNGYIEYSEFVT--VAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI- 443
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G + E V ++D N+DG V +EF +
Sbjct: 444 ------FGVSDVDS------ETWKSVLSEVDKNNDGEVDFDEFQQ 476
Score = 43.9 bits (104), Expect = 4e-06
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-----------FKLYDINGDGCI 69
+F D N +G + +L+ L+R + D + +G I
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
Query: 70 SRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVS 129
SE + A+ + + E+++ FR D ++ G ++ E + + VS
Sbjct: 400 EYSEF--VTVAMDR---KTLLSR------ERLERAFRMFDSDNSGKISSTE-LATIFGVS 447
Query: 130 TQLEKSIESCLK 141
++ +S L
Sbjct: 448 DVDSETWKSVLS 459
Score = 32.7 bits (75), Expect = 0.037
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 6 SKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65
++ ++ L F+ FD + +G IS +L + E + D N
Sbjct: 410 DRKTLLSRERLER--AFRMFDSDNSGKISSTELATIFG--VSDVDSETWKSVLSEVDKNN 465
Query: 66 DGCISRSELTQIVQAV 81
DG + E Q++ +
Sbjct: 466 DGEVDFDEFQQMLLKL 481
Score = 32.0 bits (73), Expect = 0.064
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIES 138
+++ +F K+D N DG + E IE ++ +
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASM 374
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 56.4 bits (136), Expect = 3e-10
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGS-IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83
D + NG I F + L ++ ++ + E++R F+++D +G+G IS +EL ++ + E
Sbjct: 357 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416
Query: 84 LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
TD E++D + R+ D++ DG V EEF++
Sbjct: 417 -----KLTD------EEVDEMIREADIDGDGQVNYEEFVQ 445
Score = 42.6 bits (100), Expect = 1e-05
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 30 NGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKN 89
+G I L L + + F L+D +GDG I+ EL ++++ +G+ N
Sbjct: 290 DGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS----LGQ-N 344
Query: 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
T + ++ + ++D + +G + EF+
Sbjct: 345 PT------EAELQDMINEVDADGNGTIDFPEFLT 372
Score = 37.6 bits (87), Expect = 8e-04
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 18/88 (20%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVH--------------ELMGRKNQTDAARK- 96
E ++ + +R+E+ + ++G K + + +
Sbjct: 247 EGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQL 306
Query: 97 AKEQID---FVFRKLDLNDDGVVTLEEF 121
+EQI F D + DG +T +E
Sbjct: 307 TEEQIAEFKEAFSLFDKDGDGTITTKEL 334
Score = 33.7 bits (77), Expect = 0.017
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-------FKLYDINGDGCISRSEL 74
F+ FD + NG IS +L ++ L EKL T + DI+GDG ++ E
Sbjct: 391 FRVFDKDGNGYISAAELRHVMTNL-----GEKL--TDEEVDEMIREADIDGDGQVNYEEF 443
Query: 75 TQIV 78
Q++
Sbjct: 444 VQMM 447
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+ F+ +D N DG +S E ++ A T E I F ++D++ +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSP-----YFTQ------EDIVKFFEEIDVDGN 51
Query: 114 GVVTLEEFIE 123
G + +EF
Sbjct: 52 GELNADEFTS 61
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
VF+ FD N +G +S + E + F+ D++G+G ++ E
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 54.4 bits (132), Expect = 3e-10
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
+A DV+ +G I +++ + L + + L F +D +G G I+ EL Q
Sbjct: 69 MQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQA---- 124
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
D +I+ + R +D ++DG + EF+
Sbjct: 125 ---CEEFGVED------VRIEELMRDVDQDNDGRIDYNEFVA 157
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE-LTQIVQ 79
+F D + +G I+F +L L + ++ + D++ G I E +
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIA---- 87
Query: 80 AVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEE 120
N+ + ++ + F D + G +T +E
Sbjct: 88 ----ATLHLNKIE----REDHLFAAFTYFDKDGSGYITPDE 120
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
L+ F + D + G I+ EL ++ +G + +I + + D++
Sbjct: 27 AGLKEMFNMIDADKSGQITFEELKAGLKR----VGAN-------LKESEILDLMQAADVD 75
Query: 112 DDGVVTLEEFIESCLKVSTQLEK 134
+ G + +EFI + L ++ +
Sbjct: 76 NSGTIDYKEFIAATLHLNKIERE 98
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 55.5 bits (134), Expect = 6e-10
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+ A D + NG I + + + +KL F+ +D +G+G IS EL
Sbjct: 395 ILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL------ 448
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ G + + + +D N+DG V EEF +
Sbjct: 449 -ASVFGLDHLES------KTWKEMISGIDSNNDGDVDFEEFCK 484
Score = 54.3 bits (131), Expect = 1e-09
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++L F+ D NGDG + R EL + +L G + + + ++D + D +
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQEL---IDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
Query: 112 DDGVVTLEEFIESCL 126
+G + EF+ +
Sbjct: 403 RNGYIDYSEFVTVAM 417
Score = 42.8 bits (101), Expect = 1e-05
Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT--------FKLYDINGDGCISRS 72
+F+ D N +G + ++L+ S L + D + +G I S
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQL 132
E + A+ + + K++++ F+K D + +G ++++E + S +
Sbjct: 411 EF--VTVAMD-----RKSLLS----KDKLESAFQKFDQDGNGKISVDE-LASVFGLDHLE 458
Query: 133 EKSIESCLK 141
K+ + +
Sbjct: 459 SKTWKEMIS 467
Score = 33.5 bits (77), Expect = 0.017
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 104 VFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVS 143
+FR +D N DG + +E I+ K+S + + S
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIES 390
Score = 32.7 bits (75), Expect = 0.029
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 6 SKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65
++ ++ L + F+ FD + NG IS +L L + + D N
Sbjct: 418 DRKSLLSKDKLES--AFQKFDQDGNGKISVDELASVFG--LDHLESKTWKEMISGIDSNN 473
Query: 66 DGCISRSELTQIVQ 79
DG + E +++Q
Sbjct: 474 DGDVDFEEFCKMIQ 487
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 53.1 bits (128), Expect = 6e-10
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 13/119 (10%)
Query: 25 FDVNCNGAISFRDLLVTLSTLL--RGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
+ D+L ++ + + +L F L I+ L +
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKMDVEEFV-SELCKGFSLLADPERHLITAESLRRNSGI-- 68
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLK 141
+G + + E + R+ DL+ DG + EF +++S ++ + E+ L+
Sbjct: 69 --LGIEGMSK------EDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLE 119
Score = 33.5 bits (77), Expect = 0.011
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSI-YEKLRWTFKLYDINGDGCISRSE 73
F I+ L L + E + + D++GDG ++++E
Sbjct: 45 GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTE 98
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 53.4 bits (129), Expect = 8e-10
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
FD ++F + + + F+ YD + G I ++EL Q +
Sbjct: 51 SMFDRENKAGVNFSEFTGVWKYI------TDWQNVFRTYDRDNSGMIDKNELKQALSGFG 104
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKV 128
+ + D + RK D G + ++FI+ C+ +
Sbjct: 105 YRLS-----------DQFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139
Score = 38.0 bits (89), Expect = 3e-04
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL---LRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
VF+ +D + +G I +L LS L ++ L + +D G G I+ + Q
Sbjct: 79 VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL---IRKFDRQGRGQIAFDDFIQG 135
Query: 78 VQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTL--EEFIESCLKV 128
+ L TD FR+ D + DG + + E+++ +
Sbjct: 136 CIVLQRL------TDI-----------FRRYDTDQDGWIQVSYEQYLSMVFSI 171
Score = 30.7 bits (70), Expect = 0.13
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
L F+ D + G IS +EL Q + T + + D
Sbjct: 7 SFLWNVFQRVDKDRSGVISDTELQQA-------LSNGTWT---PFNPVTVRSIISMFDRE 56
Query: 112 DDGVVTLEEFIE 123
+ V EF
Sbjct: 57 NKAGVNFSEFTG 68
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 51.5 bits (124), Expect = 8e-10
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+L FK D NGDG ++ EL + + KE + + D N
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKV-----KEASAKLIKMADKN 61
Query: 112 DDGVVTLEEFIE 123
DG ++ EEF+
Sbjct: 62 SDGKISKEEFLN 73
Score = 35.3 bits (82), Expect = 9e-04
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 21 VFKAFDVNCNGAISFRDL------LVTLSTLLRGSIYEKLRWTFKLYDINGDGCIS 70
FK D N +G ++ +L L L + + E K+ D N DG IS
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKIS 67
Score = 28.0 bits (63), Expect = 0.43
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 94 ARKAKEQIDFVFRKLDLNDDGVVTLEE 120
A K K +++ F+KLD N DG VT E
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALE 28
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 53.4 bits (129), Expect = 1e-09
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
A D++ +G I + + + L + E L F +D +G G I+ E+ Q
Sbjct: 53 DAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQA----- 107
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
D ID + +++D ++DG + EF
Sbjct: 108 --CKDFGLDD------IHIDDMIKEIDQDNDGQIDYGEFAA 140
Score = 38.0 bits (89), Expect = 4e-04
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 33/98 (33%)
Query: 52 EKLRWTFKLYDINGDGCIS----------------RSELTQIVQAVH------------- 82
L+ FK+ D + G I+ SE+ ++ A
Sbjct: 10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 69
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEE 120
N+ + +E + F D + G +TL+E
Sbjct: 70 AATVHLNKLE----REENLVSAFSYFDKDGSGYITLDE 103
Score = 37.2 bits (87), Expect = 7e-04
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F FD + +G I+ ++ G + K D + DG I E +++
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDF--GLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRK- 144
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
G + + +D + V+
Sbjct: 145 --RKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 182
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 52.6 bits (127), Expect = 2e-09
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIY----EKLRWTFKLYDINGDGCISRSELTQIV 78
+ D + +G I F + LV + ++ E+L F+++D N DG I EL +I+
Sbjct: 63 EEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEIL 122
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+A E + T+ E I+ + + D N+DG + +EF++
Sbjct: 123 RATGE-----HVTE------EDIEDLMKDSDKNNDGRIDFDEFLK 156
Score = 47.2 bits (113), Expect = 1e-07
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 23/108 (21%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL--------LRGSIYEKLRWTFKLYDINGDGCISRS 72
F FD + G IS ++L + L L I E D +G G I
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE--------VDEDGSGTIDFE 76
Query: 73 ELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEE 120
E +M R+ + DA K++E++ FR D N DG + +EE
Sbjct: 77 EFL-------VMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEE 117
Score = 34.1 bits (79), Expect = 0.008
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD N +G I +L L E + K D N DG I E ++++ V
Sbjct: 102 FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV 161
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 52.2 bits (126), Expect = 2e-09
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLR-----GSIYEKLRWTFKLYDINGDGCISRSELTQI 77
+ ++N G + F D + + L ++LR F+ +D NGDG IS SEL +
Sbjct: 54 QQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREA 113
Query: 78 VQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
++ L+G I+ + R +DLN DG V EEF+
Sbjct: 114 MR---ALLG-HQVGH------RDIEEIIRDVDLNGDGRVDFEEFVR 149
Score = 43.7 bits (104), Expect = 3e-06
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 24/110 (21%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL--------LRGSIYEKLRWTFKLYDINGDGCISRS 72
F+ FD + +G I+ RDL + T+ L + ++N G +
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--------INMNLGGHVDFD 67
Query: 73 ELTQIVQAVHELMGRKN-QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ ELMG K A +++ FR+ D N DG ++ E
Sbjct: 68 DFV-------ELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSEL 110
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 52.5 bits (126), Expect = 2e-09
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 50 IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
I F + D + +G I+ E +A Q+ E + FR D
Sbjct: 107 IRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGI-----IQSS------EDCEETFRVCD 155
Query: 110 LNDDGVVTLEEFIE 123
+++ G + ++E
Sbjct: 156 IDESGQLDVDEMTR 169
Score = 47.5 bits (113), Expect = 2e-07
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSI-----YEKLRWTFKLYDINGDGC-----IS 70
+F DVN NG IS +++ S ++ ++ K G G
Sbjct: 21 MFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETD 80
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + + K + + D +F +D + +G +TL+E+
Sbjct: 81 WPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEW 131
Score = 44.4 bits (105), Expect = 2e-06
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFR-KLDL 110
+ + F D+N +G IS E+ + ++ T K + F +
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVYKASDI--VINNLGATPEQAKRHKDAVEAFFGGAGM 73
Query: 111 NDDGVVTLEEFIE 123
+IE
Sbjct: 74 KYGVETDWPAYIE 86
Score = 42.1 bits (99), Expect = 1e-05
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
+F D + NGAI+ + E TF++ DI+ G + E+T+
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Score = 27.1 bits (60), Expect = 2.0
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 98 KEQID---FVFRKLDLNDDGVVTLEEFIESCLKV 128
I +F LD+N +G ++L+E + +
Sbjct: 12 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDI 45
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 53.5 bits (129), Expect = 2e-09
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
+ D++ +G+I + + + + E++ FK++D +G G IS EL ++
Sbjct: 386 LMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQ 445
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ E+++ + ++D N DG V EF+E
Sbjct: 446 ADSSIQ-----------MEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 51.2 bits (123), Expect = 1e-08
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAAR---KAKEQIDFVFRKL 108
++L F+ D N DG + R EL + L G + + ++QID + L
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL 390
Query: 109 DLNDDGVVTLEEFIESCL 126
D++ G + EFI S +
Sbjct: 391 DMDGSGSIEYSEFIASAI 408
Score = 40.4 bits (95), Expect = 7e-05
Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT--------------FKLYDINGD 66
+F+ D N +G + +L+ +R + L D++G
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 67 GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCL 126
G I SE I A+ + E+++ F+ D + G ++ +E +
Sbjct: 396 GSIEYSEF--IASAIDR---TILLSR------ERMERAFKMFDKDGSGKISTKELFKLFS 444
Query: 127 KVSTQL-EKSIESCLK 141
+ + + + +ES ++
Sbjct: 445 QADSSIQMEELESIIE 460
Score = 35.4 bits (82), Expect = 0.004
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 6 SKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDING 65
+ ++ + FK FD + +G IS ++L S E+L + D N
Sbjct: 409 DRTILLSRERMER--AFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNK 466
Query: 66 DGCISRSELTQIVQ 79
DG + +E +++Q
Sbjct: 467 DGEVDFNEFVEMLQ 480
Score = 31.6 bits (72), Expect = 0.078
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 104 VFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVSTQ 145
+FRKLD N+DG++ +E + + S ++
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGS 377
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 51.8 bits (125), Expect = 3e-09
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIY-----EKLRWTFKLYDINGDGCISRSELTQI 77
FD NG I F + + L + ++LR F+LYD G+G IS + +I
Sbjct: 57 DEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREI 116
Query: 78 VQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ + E + E +D + ++D + G V EEF+
Sbjct: 117 LAELDE-----TLSS------EDLDAMIDEIDADGSGTVDFEEFMG 151
Score = 33.7 bits (78), Expect = 0.009
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 54 LRWTFKLYD-INGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLND 112
L F+ ++ G G +S ++ I++ +G QT K I + + D
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEV----LGI-QQT------KSTIRQLIDEFDPFG 63
Query: 113 DGVVTLEEFIE 123
+G + + F
Sbjct: 64 NGDIDFDSFKI 74
Score = 31.0 bits (71), Expect = 0.077
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
F+ +D NG IS + L+ L E L D +G G + E ++
Sbjct: 97 FRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 51.4 bits (124), Expect = 3e-09
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGS-IYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
+D + + D + + + ++++ F+L+D + G IS L ++ + +
Sbjct: 66 DEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKEL 125
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E TD E++ + + DL+ DG + EFI
Sbjct: 126 GE-----TLTD------EELRAMIEEFDLDGDGEINENEFIA 156
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+ F L+D+N DG + EL ++A +G K +I + + D
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKA----LG-FELP------KREILDLIDEYDSEGR 73
Query: 114 GVVTLEEFIE 123
++ ++F
Sbjct: 74 HLMKYDDFYI 83
Score = 31.0 bits (71), Expect = 0.090
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
F+ FD + G IS ++L L E+LR + +D++GDG I+ +E I
Sbjct: 102 FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 50.9 bits (123), Expect = 4e-09
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D G ++F D L ++ + E++ FKL+D + G IS L ++ + +
Sbjct: 49 SEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL 108
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E N TD E++ + + D + DG V+ +EF+
Sbjct: 109 GE-----NLTD------EELQEMIDEADRDGDGEVSEQEFLR 139
Score = 37.4 bits (88), Expect = 4e-04
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+R F L+D +G G I EL ++A +G KE+I + ++D
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRA----LGF-EPK------KEEIKKMISEIDKEGT 56
Query: 114 GVVTLEEFIE 123
G + +F+
Sbjct: 57 GKMNFGDFLT 66
Score = 30.1 bits (69), Expect = 0.13
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
FK FD + G ISF++L L E+L+ D +GDG +S E +I++
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 50.6 bits (122), Expect = 7e-09
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLR----GSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
D + +G + F + LV + ++ G E+L F+++D N DG I EL ++
Sbjct: 62 DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIML 121
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
QA E T+ + I+ + + D N+DG + +EF+E
Sbjct: 122 QATGE-----TITE------DDIEELMKDGDKNNDGRIDYDEFLE 155
Score = 32.9 bits (76), Expect = 0.018
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD N +G I +L + L + + K D N DG I E + ++ V
Sbjct: 101 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGV 160
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 51.0 bits (123), Expect = 7e-09
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D + NG I F + L ++ + E++R F+++D +G+G IS +EL ++ +
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL 113
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E TD E++D + R+ D++ DG V EEF++
Sbjct: 114 GE-----KLTD------EEVDEMIREADIDGDGQVNYEEFVQ 144
Score = 44.8 bits (107), Expect = 1e-06
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD + NG IS +L ++ L E++ + DI+GDG ++ E Q+
Sbjct: 90 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM---- 145
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTL 118
M K A KE I R + L
Sbjct: 146 ---MTAKGGGGGAAARKEVIRNKIRAIGKMARVFSVL 179
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+ F L+D +GDG I+ EL ++++ +G+ N T + ++ + ++D + +
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRS----LGQ-NPT------EAELQDMINEVDADGN 61
Query: 114 GVVTLEEFIE 123
G + EF+
Sbjct: 62 GTIDFPEFLT 71
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 48.7 bits (117), Expect = 7e-09
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + FK +D NGDG IS SELT ++ + + +++ + ++D +
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGS------------TSADEVQRMMAEIDTD 50
Query: 112 DDGVVTLEEFIE 123
DG + EFI
Sbjct: 51 GDGFIDFNEFIS 62
Score = 30.6 bits (70), Expect = 0.037
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSI-YEKLRWTFKLYDINGDGCISRSE 73
+FK FD N +G IS +L L TL GS ++++ D +GDG I +E
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTL--GSTSADEVQRMMAEIDTDGDGFIDFNE 59
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 50.9 bits (122), Expect = 9e-09
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGS-----------IYEKLRWTFKLYDINGDGCISRSEL 74
+ I+F L L I E F ++D +G G I+ E
Sbjct: 76 GMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW 135
Query: 75 TQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ + + E + FR DL++ G + ++E
Sbjct: 136 KAYGKISGI-----SPSQ------EDCEATFRHCDLDNAGDLDVDEMTR 173
Score = 45.9 bits (109), Expect = 6e-07
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQI-DFVFRKLDL 110
++ + F DING+G I+ E+ + + T K + + FR +
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDD--ICAKLEATPEQTKRHQVCVEAFFRGCGM 77
Query: 111 NDDGVVTLEEFIESCLKVSTQLEKSIE 137
+ +F++ +++T K
Sbjct: 78 EYGKEIAFPQFLDGWKQLATSELKKWA 104
Score = 42.4 bits (100), Expect = 9e-06
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLS-TLLR--GS--IYEKLRWTFKLYDINGDG-----CIS 70
+F D+N NG I+ +++ S + + K G G I+
Sbjct: 25 MFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIA 84
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + + +K + +E D VF D + G +TL+E+
Sbjct: 85 FPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW 135
Score = 34.7 bits (80), Expect = 0.005
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
VF FD + +G I+ + E TF+ D++ G + E+T+
Sbjct: 118 VFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQ 174
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 50.8 bits (122), Expect = 9e-09
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + F D N +G +S E+ + + I+ + + LD+N
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTV-------LASVGIKK------WDINRILQALDIN 85
Query: 112 DDGVVTLEEFIESCLKVSTQLEKSIESCLKV 142
D G +T EF+ C + +++
Sbjct: 86 DRGNITYTEFMAGCYRWKNIESTFLKAAFNK 116
Score = 48.1 bits (115), Expect = 7e-08
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE-LTQIVQ 79
+F D N NG++S R++ L+++ G + + DIN G I+ +E +
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLASV--GIKKWDINRILQALDINDRGNITYTEFMA---- 97
Query: 80 AVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
R + + F K+D ++DG ++ +
Sbjct: 98 ----GCYRWKNIE-----STFLKAAFNKIDKDEDGYISKSDI 130
Score = 32.7 bits (75), Expect = 0.027
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 4 VTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT--FKLY 61
+ I + L A F D + +G IS D+ +L+ + + F
Sbjct: 98 GCYRWKNIESTFLKA--AFNKIDKDEDGYISKSDI----VSLVHDKVLDNNDIDNFFLSV 151
Query: 62 DINGDGCISRSELTQI 77
G + +I
Sbjct: 152 HSIKKGIPREHIINKI 167
Score = 27.6 bits (62), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ I+ +F KLD N +G ++ E
Sbjct: 38 IKYINELFYKLDTNHNGSLSHREIYT 63
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 48.3 bits (116), Expect = 1e-08
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E++ FK++D NGDG I E I+Q +G + TD +++ ++ D +
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQK----VGEEPLTD------AEVEEAMKEADED 57
Query: 112 DDGVVTLEEFIE 123
+GV+ + EF++
Sbjct: 58 GNGVIDIPEFMD 69
Score = 31.0 bits (71), Expect = 0.029
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSI-YEKLRWTFKLYDINGDGCISRSELTQIVQA 80
FK FD N +G I F + + + + ++ K D +G+G I E +
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL--- 70
Query: 81 VHELMGRKNQTD 92
+ +
Sbjct: 71 ----IKKSKNAL 78
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/104 (13%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 26 DVNCNGAISFRDLLVTLSTLLR------GSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
+ +++ + + + + E F+++D G +S +L ++
Sbjct: 51 SLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLT 110
Query: 80 AVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ E TD ++D + + ++++ +G + ++FIE
Sbjct: 111 GLGE-----KLTD------AEVDELLKGVEVDSNGEIDYKKFIE 143
Score = 36.8 bits (86), Expect = 7e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 58 FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
F L+D G G I++ L ++A +G N T+ D + L D +T
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRA----IG-YNPTNQ-----LVQDIINADSSLRDASSLT 59
Query: 118 LEEFIE 123
L++
Sbjct: 60 LDQITG 65
Score = 34.1 bits (79), Expect = 0.006
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
F+ FD G +S DL L+ L ++ K +++ +G I + + V
Sbjct: 89 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 48.0 bits (115), Expect = 2e-08
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 30 NGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKN 89
+ S + L S + E++R F++ D +G+G IS +EL ++ + E
Sbjct: 7 HHHGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGE-----K 61
Query: 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
TD E++D + R+ D++ DG V EEF++
Sbjct: 62 LTD------EEVDEMIREADIDGDGQVNYEEFVQ 89
Score = 34.9 bits (81), Expect = 0.002
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
F+ D + NG IS +L ++ L E++ + DI+GDG ++ E Q++
Sbjct: 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 91
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 49.9 bits (120), Expect = 2e-08
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D + +G I F + L ++ + E++ F+L+D + G I+ +L ++ + +
Sbjct: 71 SEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKEL 130
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E N T+ E++ + + D NDD + +EFI
Sbjct: 131 GE-----NLTE------EELQEMIAEADRNDDNEIDEDEFIR 161
Score = 36.0 bits (84), Expect = 0.002
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+R F L+D +G G I EL ++A +G KE+I + ++D +
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRA----LGF-EPK------KEEIKKMISEIDKDGS 78
Query: 114 GVVTLEEFIE 123
G + EEF+
Sbjct: 79 GTIDFEEFLT 88
Score = 31.0 bits (71), Expect = 0.087
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD + +G I+ +DL L E+L+ D N D I E +I
Sbjct: 107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI---- 162
Query: 82 HELMGRKN 89
M + +
Sbjct: 163 ---MKKTS 167
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 49.4 bits (119), Expect = 2e-08
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGS-IYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
D + NG I F + L ++ ++ E+L FK++D +G+G IS +EL ++ +
Sbjct: 53 NEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNL 112
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E TD +++D + R+ D++ DG + EEF+
Sbjct: 113 GE-----KLTD------DEVDEMIREADIDGDGHINYEEFVR 143
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + F L+D +GDG I+ EL ++++ +G+ N T + ++ + ++D +
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRS----LGQ-NPT------EAELQDMINEVDAD 58
Query: 112 DDGVVTLEEFIE 123
+G + EF+
Sbjct: 59 GNGTIDFPEFLS 70
Score = 31.7 bits (73), Expect = 0.042
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-------FKLYDINGDGCISRSEL 74
FK FD + NG IS +L ++ L G EKL T + DI+GDG I+ E
Sbjct: 89 FKVFDRDGNGLISAAELRHVMTNL--G---EKL--TDDEVDEMIREADIDGDGHINYEEF 141
Query: 75 TQIV 78
+++
Sbjct: 142 VRMM 145
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 50.2 bits (120), Expect = 2e-08
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 18/108 (16%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
+ FD + NG ISF + + + E F + G + E+ +Q
Sbjct: 94 RIFDTDFNGHISFYEFMAMYKFM------ELAYNLFVMNARARSGTLEPHEILPALQQ-- 145
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130
+G ++ + +L L +I C +
Sbjct: 146 --LG--------FYINQRTSLLLHRLFARGMAFCDLNCWIAICAFAAQ 183
Score = 39.8 bits (93), Expect = 9e-05
Identities = 12/120 (10%), Positives = 35/120 (29%), Gaps = 21/120 (17%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA 80
F D + +G + +L++ + +++D + +G IS E + +
Sbjct: 56 WFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF 115
Query: 81 VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESC----LKVSTQLEKSI 136
+ +F G + E + + ++ + +
Sbjct: 116 MELAYN-----------------LFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLL 158
Score = 32.4 bits (74), Expect = 0.029
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++ F D + G + +EL R + + + R D +
Sbjct: 51 TRIYQWFMGVDRDRSGTLEINELMMG-------QFPGGI----RLSPQTALRMMRIFDTD 99
Query: 112 DDGVVTLEEFIE 123
+G ++ EF+
Sbjct: 100 FNGHISFYEFMA 111
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 47.9 bits (115), Expect = 6e-08
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTL--------LR-------GSIY--------------- 51
F D N +G I DL L+++ L G I
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGT 72
Query: 52 ---EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108
+ +R F +D G I L +++ + + TD E++D ++R+
Sbjct: 73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGD-----RFTD------EEVDEMYREA 121
Query: 109 DLNDDGVVTLEEFI 122
++ G EF
Sbjct: 122 PIDKKGNFNYVEFT 135
Score = 35.2 bits (82), Expect = 0.002
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 30/94 (31%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQA-------------VHE------------LMGRK 88
+ F + D N DG I + +L ++ + + E + G K
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEK 68
Query: 89 -NQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
N TD ++ I F D G + +
Sbjct: 69 LNGTD----PEDVIRNAFACFDEEASGFIHEDHL 98
Score = 33.2 bits (77), Expect = 0.010
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKL-----RWTFKLYDINGDGCISRSELTQ 76
F FD +G I L L+T+ G ++ ++ I+ G + E T+
Sbjct: 82 FACFDEEASGFIHEDHLRELLTTM--G---DRFTDEEVDEMYREAPIDKKGNFNYVEFTR 136
Query: 77 IV 78
I+
Sbjct: 137 IL 138
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 46.1 bits (110), Expect = 8e-08
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
FK +D NGDG IS SEL ++ + + +++ + ++D +
Sbjct: 11 ADRERIFKRFDTNGDGKISSSELGDALKTLGSVT------------PDEVRRMMAEIDTD 58
Query: 112 DDGVVTLEEFIE 123
DG ++ +EF +
Sbjct: 59 GDGFISFDEFTD 70
Score = 34.2 bits (79), Expect = 0.003
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSI-YEKLRWTFKLYDINGDGCISRSELTQIVQ 79
+FK FD N +G IS +L L TL GS+ +++R D +GDG IS E T +
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTL--GSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73
Query: 80 AVHELM 85
A L+
Sbjct: 74 ANRGLV 79
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 47.7 bits (114), Expect = 9e-08
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 25/121 (20%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHEL 84
D + G + F + L + F D +G G + EL Q + +
Sbjct: 49 LDRDHTGKMGFNAFKELWAAL------NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYR 102
Query: 85 MGRKNQTDAARKAKE--QIDF---------------VFRKLDLNDDGVVTL--EEFIESC 125
+ + T ++ + +I F FRK D G ++F++
Sbjct: 103 LSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGT 162
Query: 126 L 126
+
Sbjct: 163 M 163
Score = 25.4 bits (56), Expect = 7.6
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 11 IRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCIS 70
R S + K + NG I F D + L L F+ D G +
Sbjct: 101 YRLSPQTLTTIVKRYS--KNGRIFFDDYVACCVKL------RALTDFFRKRDHLQQGSAN 152
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 47.2 bits (113), Expect = 1e-07
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEK-LRWTFKLYDINGDGCISRSELTQIVQAV 81
A +G I+F L L+G+ E + FK+ D +G G I +S L +++
Sbjct: 65 DAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG 124
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
T E+I ++ + G V +
Sbjct: 125 GG-----RFTP------EEIKNMWAAFPPDVAGNVDYKNIC 154
Score = 36.8 bits (86), Expect = 9e-04
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+ F + D N DG I + +L + A MGR N + E++D +
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAA----MGRLNVKN------EELD----AMIKEAS 72
Query: 114 GVVTLEEFIE 123
G + F+
Sbjct: 73 GPINFTVFLT 82
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
FK D + G+I L L+T E+++ + + + G + + ++
Sbjct: 101 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 157
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 47.5 bits (113), Expect = 1e-07
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 37/129 (28%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA---- 80
D + +G + F + + L R F +D + G + EL + +
Sbjct: 82 LDRDMSGTMGFNEFKELWAVL------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFR 135
Query: 81 ----VHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVTL--E 119
+ ++ T+ +I F FR+ D GVV +
Sbjct: 136 LSPQAVNSIAKRYSTN------GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYD 189
Query: 120 EFIESCLKV 128
+FI+ + V
Sbjct: 190 DFIQCVMSV 198
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 56 WTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGV 115
+ + DG I EL + L E + LD + G
Sbjct: 36 YGYFAAVAGQDGQIDADELQRC------LTQSGIAGGYKPFNLETCRLMVSMLDRDMSGT 89
Query: 116 VTLEEFIE 123
+ EF E
Sbjct: 90 MGFNEFKE 97
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 45.2 bits (108), Expect = 2e-07
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E L+ F+ +D +GDG I+ EL + + + + E++D + R+ D++
Sbjct: 6 EDLQVAFRAFDQDGDGHITVDELRRAMAGLGQ-----PLPQ------EELDAMIREADVD 54
Query: 112 DDGVVTLEEFIE 123
DG V EEF
Sbjct: 55 QDGRVNYEEFAR 66
Score = 31.3 bits (72), Expect = 0.023
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
F+AFD + +G I+ +L ++ L + E+L + D++ DG ++ E
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEE 63
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 45.7 bits (109), Expect = 2e-07
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E+L+ FK++D + +G IS SEL ++ + E TD E+++ + ++ DL+
Sbjct: 9 EELKEAFKVFDKDQNGYISASELRHVMINLGE-----KLTD------EEVEQMIKEADLD 57
Query: 112 DDGVVTLEEFIE 123
DG V EEF++
Sbjct: 58 GDGQVNYEEFVK 69
Score = 32.2 bits (74), Expect = 0.013
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
FK FD + NG IS +L + L E++ K D++GDG ++ E ++
Sbjct: 15 FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM---- 70
Query: 82 HELMGRKNQTDAARKAKE 99
M
Sbjct: 71 ---MMTVRGGGGGNGWSR 85
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 46.3 bits (111), Expect = 2e-07
Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGS---IYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
+ + L L+ E+ F+++D + G I EL ++
Sbjct: 44 TEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLT 103
Query: 80 AVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
++ E ++ E++D + + + + DG+V +F+
Sbjct: 104 SLGE-----KLSN------EEMDELLKGVPV-KDGMVNYHDFV 134
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ F L+D +G G I ++ + +++A G +N T +I +++
Sbjct: 5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRA----CG-QNPT------LAEI----TEIEST 49
Query: 112 DDGVVTLEEFIE 123
V +E+F++
Sbjct: 50 LPAEVDMEQFLQ 61
Score = 28.2 bits (64), Expect = 0.57
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-------FKLYDINGDGCISRSEL 74
F+ FD + G I +L L++L G EKL + K + DG ++ +
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTSL--G---EKL--SNEEMDELLKGVPVK-DGMVNYHDF 133
Query: 75 TQIVQA 80
Q++ A
Sbjct: 134 VQMILA 139
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 46.9 bits (112), Expect = 2e-07
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 45/136 (33%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL--------LR-------GSI--------------- 50
F+ D + +G IS D+ T +L L G I
Sbjct: 62 AFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAG 121
Query: 51 ---YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRK 107
+ + F L+D GDG L + + E + +++D +
Sbjct: 122 TDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGE-----KFSQ------DEVDQALSE 169
Query: 108 LDLNDDGVVTLEEFIE 123
++ +G++ +++F +
Sbjct: 170 APIDGNGLIDIKKFAQ 185
Score = 34.6 bits (80), Expect = 0.005
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 31/94 (32%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQA-------------VHE------------LMGRK 88
+ F+L D + DG IS++++ + V E + G +
Sbjct: 59 FKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDR 118
Query: 89 -NQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
TD ++ I F D DG E
Sbjct: 119 IAGTD----EEDVIVNAFNLFD-EGDGKCKEETL 147
Score = 31.9 bits (73), Expect = 0.046
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 18/78 (23%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKL-----RWTFKLYDINGDGCISRSELTQ 76
F FD +G L +L+T G EK I+G+G I + Q
Sbjct: 132 FNLFDEG-DGKCKEETLKRSLTTW--G---EKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185
Query: 77 IVQAVHELMGRKNQTDAA 94
I + + + + A
Sbjct: 186 I-------LTKGAKEEGA 196
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 46.3 bits (111), Expect = 2e-07
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEK-LRWTFKLYDINGDGCISRSELTQIVQAV 81
D NG I F + L + ++ + E LR F+ +D G G I ++ L + +
Sbjct: 49 NEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNL 108
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ + + + G + + FI
Sbjct: 109 GD-----RLKP------HEFAEFLGITET-EKGQIRYDNFIN 138
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 58 FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
F+L+D G I++ L +++ G + +F + D +G +
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQ----FG-VRVE------PAAFNEMFNEADATGNGKIQ 60
Query: 118 LEEFIE 123
EF+
Sbjct: 61 FPEFLS 66
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 46.4 bits (111), Expect = 2e-07
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 26 DVNCNGAISFRDLLVTLSTLLR---GSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
A ++L + G+ ++ FK +D G G IS +E+ +++ +
Sbjct: 56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG 115
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDL--NDDGVVTLEEFI 122
E T+ +Q + +F D+ + DG + E+ +
Sbjct: 116 E-----RITE------DQCNDIFTFCDIREDIDGNIKYEDLM 146
Score = 30.2 bits (69), Expect = 0.14
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 31/100 (31%)
Query: 52 EKLRWTFKLYDI--NGDGCISRSELTQI------------VQAVHE-------------- 83
E++R F L+D DG + +++ + V
Sbjct: 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEI 68
Query: 84 --LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + D A E ++ F+ D G+++ E
Sbjct: 69 LPIYEEMSSKDTGTAADEFME-AFKTFDREGQGLISSAEI 107
Score = 29.9 bits (68), Expect = 0.21
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-------FKLYDI--NGDGCISRS 72
FK FD G IS ++ L L G E++ T F DI + DG I
Sbjct: 91 FKTFDREGQGLISSAEIRNVLKML--G---ERI--TEDQCNDIFTFCDIREDIDGNIKYE 143
Query: 73 ELTQIV 78
+L + V
Sbjct: 144 DLMKKV 149
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 46.4 bits (111), Expect = 3e-07
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGS--IYEKLRWTFKLYDINGDGCISRSELTQIVQAVHE 83
++ F + L L+ + FK +D G G IS +EL ++ A+ E
Sbjct: 56 HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGE 115
Query: 84 LMGRKNQTDAARKAKEQIDFVFRKLDLNDD--GVVTLEEFIE 123
+D E +D + + DL +D G V E+F++
Sbjct: 116 -----RLSD------EDVDEIIKLTDLQEDLEGNVKYEDFVK 146
Score = 31.0 bits (71), Expect = 0.085
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 32/100 (32%)
Query: 52 EKLRWTFKLYDI--NGDGCISRSELTQI------------VQAVHE-------------- 83
+ L+ F+L+D DG + +L + V AV
Sbjct: 9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEF 68
Query: 84 --LMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEF 121
+ + F+ D G ++ E
Sbjct: 69 LPAYEGLMDCE--QGTFADYMEAFKTFDREGQGFISGAEL 106
Score = 28.7 bits (65), Expect = 0.56
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT-------FKLYDIN--GDGCISRS 72
FK FD G IS +L L+ L G E+L + KL D+ +G +
Sbjct: 90 FKTFDREGQGFISGAELRHVLTAL--G---ERL--SDEDVDEIIKLTDLQEDLEGNVKYE 142
Query: 73 ELTQIV 78
+ + V
Sbjct: 143 DFVKKV 148
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 44.9 bits (107), Expect = 4e-07
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM 85
+ +++ T L ++++ F + D + G I EL ++
Sbjct: 18 SCQAADSFNYKSFFST--VGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFS--S 73
Query: 86 GRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ T + D + DG + +EEF
Sbjct: 74 SARVLTS------AETKAFLAAGDTDGDGKIGVEEFQS 105
Score = 34.2 bits (79), Expect = 0.003
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 21 VFKAFDVNCNGAISF---RDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
VF D + +G I + L S+ R + + D +GDG I E +
Sbjct: 47 VFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
Query: 78 VQA 80
V+A
Sbjct: 107 VKA 109
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 45.2 bits (108), Expect = 5e-07
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 46/138 (33%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL--------LRGSI---------------------- 50
F+ FD + +G +S +L L +L L
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIK 69
Query: 51 -----YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVF 105
+++ F+ D G+G I +EL Q++ + + T +++ +
Sbjct: 70 TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGD-----ALTS------SEVEELM 118
Query: 106 RKLDLNDDGVVTLEEFIE 123
+++ ++ DG + E F++
Sbjct: 119 KEVSVSGDGAINYESFVD 136
Score = 36.4 bits (85), Expect = 0.001
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAV------HELMGRKNQTDA------------ 93
++++ F+++D + DG +S EL ++++ EL K Q +A
Sbjct: 5 DQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVY 64
Query: 94 ARKAKEQIDF------VFRKLDLNDDGVVTLEEF 121
+ K + FR LD +G + E
Sbjct: 65 RKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAEL 98
Score = 34.8 bits (81), Expect = 0.004
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 1 MSNVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWT--- 57
+ T + + D F+A D NG I +L L L G + L T
Sbjct: 68 IKTPTEQSKEMLD-------AFRALDKEGNGTIQEAELRQLLLNL--G---DAL--TSSE 113
Query: 58 ----FKLYDINGDGCISRSELTQIV 78
K ++GDG I+ ++
Sbjct: 114 VEELMKEVSVSGDGAINYESFVDML 138
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 44.5 bits (106), Expect = 6e-07
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
A G+ + + + L+ ++ FK D + G I EL ++++
Sbjct: 17 DAVKAE--GSFNHKKFFALVG--LKAMSANDVKKVFKAIDADASGFIEEEELKFVLKS-F 71
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
GR TD + + D + DG + ++EF
Sbjct: 72 AADGRDL-TD------AETKAFLKAADKDGDGKIGIDEFET 105
Score = 29.9 bits (68), Expect = 0.15
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
VFKA D + +G I +L L + + R + + K D +GDG I E +
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
Query: 78 VQ 79
V
Sbjct: 107 VH 108
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 45.1 bits (108), Expect = 6e-07
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 23 KAFDVNCNGAISFRDLLVTLST-LLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
DV+ N AI F + L +S L ++L FK++D NGDG IS +EL ++ ++
Sbjct: 54 NEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 113
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E + TD ++D + R++ + G + +++F
Sbjct: 114 GEKL-----TD------AEVDEMLREVS-DGSGEINIKQFAA 143
Score = 35.1 bits (82), Expect = 0.002
Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 54 LRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDD 113
+ F L+D + G IS SEL ++++ +G + + + ++ + ++D++ +
Sbjct: 13 FKEAFALFDKDNSGSISASELATVMRS----LGL-SPS------EAEVADLMNEIDVDGN 61
Query: 114 GVVTLEEFIE 123
+ EF+
Sbjct: 62 HAIEFSEFLA 71
Score = 26.3 bits (59), Expect = 2.7
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
FK FD N +G IS +L L+++ ++ + +G G I+ + ++
Sbjct: 90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALLS 146
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 44.5 bits (106), Expect = 6e-07
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM 85
+ +++ L + ++ F + D + G I EL +Q V
Sbjct: 18 ACEAADSFNYKAFFAK--VGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQ-VFSAG 74
Query: 86 GRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
R TD + + D + DG + ++E+
Sbjct: 75 ARAL-TD------AETKAFLKAGDSDGDGAIGVDEWAA 105
Score = 32.6 bits (75), Expect = 0.012
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
F D + +G I +L L S R + + K D +GDG I E +
Sbjct: 47 AFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
Query: 78 VQA 80
V+A
Sbjct: 107 VKA 109
Score = 24.9 bits (55), Expect = 7.6
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 17/77 (22%)
Query: 69 ISRSELTQIVQAVH-----------ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
++ +++ ++A +G K+ + I F +D + G +
Sbjct: 7 LADADVAAALKACEAADSFNYKAFFAKVGLTA------KSADDIKKAFFVIDQDKSGFIE 60
Query: 118 LEEFIESCLKVSTQLEK 134
+E S
Sbjct: 61 EDELKLFLQVFSAGARA 77
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 45.3 bits (108), Expect = 6e-07
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGS---IYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
D + + F L L + + YE F+++D G+G + +EL ++ +
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLG 117
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E T+ E+++ V + +G + E F++
Sbjct: 118 E-----KMTE------EEVETVL-AGHEDSNGCINYEAFLK 146
Score = 34.5 bits (80), Expect = 0.004
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDA-ARKAKEQIDFVFRKLDL 110
E+ + F+L+D GDG I S+ +++A +G +N T+A K D
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRA----LG-QNPTNAEVLKVLGNPK-----SDE 59
Query: 111 NDDGVVTLEEFIE 123
V E F+
Sbjct: 60 LKSRRVDFETFLP 72
Score = 32.6 bits (75), Expect = 0.023
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD NG + +L L+TL E++ + +GCI+ + + +V
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKHILSV 151
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM 85
G ++ L+G +++ F++ D + G I EL +++
Sbjct: 17 AFKDPGTFDYKRFFHL--VGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFS--A 72
Query: 86 GRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
++ D + + D + DG + +EF +
Sbjct: 73 HGRDLND------TETKALLAAGDSDHDGKIGADEFAK 104
Score = 29.5 bits (67), Expect = 0.17
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 12 RDSNLYAHYVFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGC 68
D+ + VF+ D + +G I +L L S R + + D + DG
Sbjct: 39 TDAQVKE--VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGK 96
Query: 69 ISRSELTQIVQ 79
I E ++V
Sbjct: 97 IGADEFAKMVA 107
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 43.4 bits (103), Expect = 1e-06
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
AF + + + L+ + ++ F + D + G I EL I++
Sbjct: 16 GAFTAA--DSFDHKKFFQMVG--LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKG-F 70
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
R + ++ + D + DG + +EEF
Sbjct: 71 SSDARD-LSA------KETKTLMAAGDKDGDGKIGVEEFST 104
Score = 33.0 bits (76), Expect = 0.009
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
VF D + +G I +L L S+ R ++ + D +GDG I E + +
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105
Query: 78 VQ 79
V
Sbjct: 106 VA 107
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 43.0 bits (102), Expect = 2e-06
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + F ++D +G G IS EL +++ +G+ N T E++D + ++D +
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRM----LGQ-NPTK------EELDAIIEEVDED 68
Query: 112 DDGVVTLEEFIE 123
G + EEF+
Sbjct: 69 GSGTIDFEEFLV 80
Score = 33.0 bits (76), Expect = 0.008
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 23/80 (28%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTL--------LRGSIYEKLRWTFKLYDINGDGCISRSE 73
F FD + G IS ++L + L L I E D +G G I E
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE--------VDEDGSGTIDFEE 77
Query: 74 LTQIVQAVHELMGRKNQTDA 93
+ M R+ + DA
Sbjct: 78 FLVM-------MVRQMKEDA 90
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 42.9 bits (102), Expect = 2e-06
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 28 NCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGR 87
+ +G I D + L I L+ FK+ D + G I+ EL ++ +G
Sbjct: 1 HSSGHIDDDDKHMA-ERLSEEEIGG-LKELFKMIDTDNSGTITFDELKDGLKR----VGS 54
Query: 88 KNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
+ + +I + D++ G + EFI
Sbjct: 55 EL-------MESEIKDLMDAADIDKSGTIDYGEFI 82
Score = 32.5 bits (75), Expect = 0.012
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
+FK D + +G I+F +L L + + +++ DI+ G I E
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 45/136 (33%)
Query: 21 VFKAFDVNCNGAISFRDLLVTLSTL--------LR-------GSIY-------------- 51
F DV+ +G +S D+ L L G +
Sbjct: 23 AFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSG 82
Query: 52 ----EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRK 107
E +R F ++D ++ + +++ + + N +++ F++
Sbjct: 83 TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGD-----NFNK------DEMRMTFKE 131
Query: 108 LDLNDDGVVTLEEFIE 123
+ + G +F
Sbjct: 132 APV-EGGKFDYVKFTA 146
Score = 25.9 bits (58), Expect = 4.9
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F FD ++ + L + +++R TFK + G G + T +
Sbjct: 93 FAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTAM---- 147
Query: 82 HELMGRKNQTDA 93
+ + +A
Sbjct: 148 ---IKGSGEEEA 156
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 44.0 bits (105), Expect = 2e-06
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 45/134 (33%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTL--------LR-------GSIY--------------- 51
F D + +G I DL S+L L G +
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGT 81
Query: 52 ---EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108
+ LR F ++D +G G I L +++ + + N + E+I V++
Sbjct: 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGD-----NFSK------EEIKNVWKDA 130
Query: 109 DLNDDGVVTLEEFI 122
L + + +
Sbjct: 131 PL-KNKQFNYNKMV 143
Score = 26.3 bits (59), Expect = 2.9
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F FD + G I L L + E+++ +K + + + +++ I
Sbjct: 91 FSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI---- 145
Query: 82 HELMGRKNQTD 92
G+ D
Sbjct: 146 ---KGKAEDED 153
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 42.6 bits (101), Expect = 2e-06
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++ + F+L+D + D ++ EL +++A +G N T ++I + + D +
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRA----LGA-NPTK------QKISEIVKDYDKD 62
Query: 112 DDGVVTLEEFIE 123
+ G E F+
Sbjct: 63 NSGKFDQETFLT 74
Score = 35.7 bits (83), Expect = 6e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F+ FD + + ++ +L + L +K+ K YD + G + I
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTI---- 75
Query: 82 HELMGRK-NQTDA 93
M + D+
Sbjct: 76 ---MLEYGQEVDS 85
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 42.7 bits (101), Expect = 3e-06
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM 85
D + S + + +L+ F++ D + G I EL +Q
Sbjct: 17 DCQAPDSFSPKKFFQISG--MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFE--S 72
Query: 86 GRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
G + T + D + DG + EEF E
Sbjct: 73 GARVLTA------SETKTFLAAADHDGDGKIGAEEFQE 104
Score = 34.6 bits (80), Expect = 0.002
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
+F+ D + +G I +L L + R + + D +GDG I E ++
Sbjct: 46 IFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
Query: 78 VQA 80
VQ+
Sbjct: 106 VQS 108
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 43.5 bits (103), Expect = 3e-06
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 37/131 (28%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA-- 80
D + +G + F + + L R F +D + G + EL + +
Sbjct: 49 SMLDRDMSGTMGFNEFKELWAVL------NGWRQHFISFDSDRSGTVDPQELQKALTTMG 102
Query: 81 ------VHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVTL- 118
+ ++ T +I F FR+ D G+V
Sbjct: 103 FRLNPQTVNSIAKRYSTS------GKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFS 156
Query: 119 -EEFIESCLKV 128
++FI+ + V
Sbjct: 157 YDDFIQCVMTV 167
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 42.2 bits (100), Expect = 4e-06
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
A + ++ L + ++ F + D + G I EL +Q
Sbjct: 16 AACSAA--DSFKHKEFFAK--VGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFS 71
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ TD + D + DG++ ++EF
Sbjct: 72 --PSARALTD------AETKAFLADGDKDGDGMIGVDEFAA 104
Score = 32.5 bits (75), Expect = 0.015
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
F D + +G I +L L S R + + D +GDG I E +
Sbjct: 46 AFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
Query: 78 VQA 80
++A
Sbjct: 106 IKA 108
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 41.4 bits (98), Expect = 5e-06
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 52 EKLRWTFKLYDI-NGD-GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
E+++ F+++ GD IS+ EL ++Q + + K +D + ++D
Sbjct: 5 EEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLL---------KGMSTLDEMIEEVD 55
Query: 110 LNDDGVVTLEEFIE 123
N DG V+ EEF+
Sbjct: 56 KNGDGEVSFEEFLV 69
Score = 27.6 bits (62), Expect = 0.54
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 21 VFKAFDVN--CNGAISFRDLLVTLSTLL--RGSIYEKLRWTFKLYDINGDGCISRSELTQ 76
F+ F IS +L + + TL L + D NGDG +S E
Sbjct: 10 AFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLV 69
Query: 77 IVQAV 81
+++ +
Sbjct: 70 MMKKI 74
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 42.5 bits (101), Expect = 5e-06
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRG---SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVH 82
+ AI+F + L L +E +++D G+G + +EL ++ +
Sbjct: 56 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLG 115
Query: 83 ELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
E M T+ E+++ + + + + +G + E F++
Sbjct: 116 EKM-----TE------EEVEELMKGQE-DSNGCINYEAFVK 144
Score = 35.6 bits (83), Expect = 0.002
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDA-ARKAKEQIDFVFRKLDL 110
+ + F L+D GD I+ S++ I +A +G +N T+A K +
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARA----LG-QNPTNAEINKILGNPS-----KEE 57
Query: 111 NDDGVVTLEEFIE 123
+ +T EEF+
Sbjct: 58 MNAAAITFEEFLP 70
Score = 29.0 bits (66), Expect = 0.36
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 25/72 (34%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTL------------LRGSIYEKLRWTFKLYDINGDGCI 69
+ FD NG + +L L+TL ++G + +GCI
Sbjct: 91 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-------------QEDSNGCI 137
Query: 70 SRSELTQIVQAV 81
+ + + +V
Sbjct: 138 NYEAFVKHIMSV 149
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 40.9 bits (97), Expect = 6e-06
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
++++ F L+D N G I EL ++A +G + K +I + + D
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRA----LGF-DVK------KPEILELMNEYDRE 55
Query: 112 DDGVVTLEEFIE 123
+G + ++F++
Sbjct: 56 GNGYIGFDDFLD 67
Score = 31.3 bits (72), Expect = 0.025
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
F FD N G+I + +L V + L ++ YD G+G I +
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL------ 66
Query: 82 HELMGRK-NQTD 92
++M K D
Sbjct: 67 -DIMTEKIKNRD 77
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 41.6 bits (98), Expect = 2e-05
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 24 AFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA--- 80
D + G + F + + + +K + +K +D++ G I SEL +A
Sbjct: 55 VMDSDTTGKLGFEEFKYLWNNI------KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGF 108
Query: 81 -----VHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVTL-- 118
++ ++ R+ +DF F+ LD + G + +
Sbjct: 109 HLNEHLYSMIIRRYS-----DEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNI 163
Query: 119 EEFIESCL 126
+E+++ +
Sbjct: 164 QEWLQLTM 171
Score = 25.1 bits (55), Expect = 9.9
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 12 RDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISR 71
+ + + + G + F + + L L + + FK D +G G I
Sbjct: 109 HLNEHLYSMIIRRYSDE-GGNMDFDNFISCLVRL------DAMFRAFKSLDKDGTGQIQV 161
Query: 72 SE 73
+
Sbjct: 162 NI 163
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 40.4 bits (95), Expect = 2e-05
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E + + +D+NG+G I L ++++ +G +T ++ + ++
Sbjct: 32 EGFKEKYMEFDLNGNGDIDIMSLKRMLEK----LG-VPKTH------LELKKLIGEVSSG 80
Query: 112 DDGVVTLEEFIE 123
+ +F+
Sbjct: 81 SGETFSYPDFLR 92
Score = 32.0 bits (73), Expect = 0.023
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
+ FD+N NG I L L L + +L+ S +
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPD 89
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGS-IYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
K +++ L LS + E+L F +D N G +++S++ I+
Sbjct: 54 KKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTW 113
Query: 82 HELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
+ + TD ++ + + + F E
Sbjct: 114 GDAL-----TD------QEAIDALNAFS--SEDNIDYKLFCE 142
Score = 32.6 bits (75), Expect = 0.019
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 58 FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
+ + G IS + + +G + +K+ +T
Sbjct: 21 IYFNEKSSGGKISIDNASYNARK----LG-LAPS------SIDE----KKIKELYGDNLT 65
Query: 118 LEEFIE 123
E+++E
Sbjct: 66 YEQYLE 71
Score = 30.3 bits (69), Expect = 0.13
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFK-----LYDINGDGCISRSELTQ 76
F FD NC G ++ + L+T G + L T + L + + I +
Sbjct: 90 FAHFDNNCTGYLTKSQMKNILTTW--G---DAL--TDQEAIDALNAFSSEDNIDYKLFCE 142
Query: 77 IV 78
+
Sbjct: 143 DI 144
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 40.0 bits (94), Expect = 2e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELM 85
+ + T L +++ F+ D + G + EL +Q
Sbjct: 17 ECQDPDTFEPQKFFQTSG--LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSD- 73
Query: 86 GRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
R+ T+ + + D + DG + +EF E
Sbjct: 74 ARE-LTE------SETKSLMDAADNDGDGKIGADEFQE 104
Score = 33.8 bits (78), Expect = 0.006
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 21 VFKAFDVNCNGAISFRDL---LVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
+F+ D + +G + +L L + R + + D +GDG I E ++
Sbjct: 46 IFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Query: 78 VQA 80
V +
Sbjct: 106 VHS 108
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 39.8 bits (93), Expect = 5e-05
Identities = 8/72 (11%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
+ + +D+N +G I L ++++ +G +T ++ + ++
Sbjct: 50 TAFKEKYMEFDLNNEGEIDLMSLKRMMEK----LGV-PKTH------LEMKKMISEVTGG 98
Query: 112 DDGVVTLEEFIE 123
++ +F+
Sbjct: 99 VSDTISYRDFVN 110
Score = 28.7 bits (64), Expect = 0.47
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 9/81 (11%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQAV 81
+ FD+N G I L + L + +++ IS + +
Sbjct: 56 YMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM---- 111
Query: 82 HELMGRKNQTDAARKAKEQID 102
M K A K +
Sbjct: 112 ---MLGKR--SAVLKLVMMFE 127
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 39.9 bits (93), Expect = 6e-05
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLN 111
E + + +D+NG+G I L ++++ +G +T ++ + R++
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEK----LGVP-KTH------LELKRLIREVSSG 96
Query: 112 DDGVVTLEEFIE 123
+ + +F+
Sbjct: 97 SEETFSYSDFLR 108
Score = 29.5 bits (66), Expect = 0.23
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 22 FKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
+ FD+N NG I L L L + +L+ + + S S+
Sbjct: 54 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSD 105
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 40.3 bits (93), Expect = 9e-05
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 19 HYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
H + D N + ++F++L L L R F+ D + + E +I
Sbjct: 14 HSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSL---EDEEIE 70
Query: 79 QAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIE 123
L R +ID F + +++E +
Sbjct: 71 TFYKMLTQRA-----------EIDRAFEEAA-GSAETLSVERLVT 103
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 44/131 (33%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSEL---------- 74
D + G + F + + + +K + +K ++ + G I +EL
Sbjct: 783 MDSDTTGKLGFEEFKYLWNNI------KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFH 836
Query: 75 --TQIVQAVHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVT 117
I + + +DF FR LD N G +
Sbjct: 837 LNQHIYSMIIRRYSDETG---------NMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQ 887
Query: 118 L--EEFIESCL 126
+ +E+++ +
Sbjct: 888 VNIQEWLQLTM 898
Score = 33.2 bits (75), Expect = 0.029
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 36/138 (26%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA---- 80
D + NG + + + + + F+ +D++ G +S E+ ++A
Sbjct: 586 MDRDGNGKLGLVEFNILWNRI------RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFK 639
Query: 81 ----VHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVTL--E 119
+H+++ + + IDF +F++LD + G + L
Sbjct: 640 LPCQLHQVIVAR-----FADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLI 694
Query: 120 EFIESCLKVSTQLEKSIE 137
++ +
Sbjct: 695 SWLSFSVLGKLAAAIEHH 712
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 37.8 bits (88), Expect = 1e-04
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 66 DGCISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFI 122
D I + L +++ + ++ + VF K D N+D + EF+
Sbjct: 23 DDKIDKPSLLTMMKENFPNFLSACDKKG-----TNYLADVFEKKDKNEDKKIDFSEFL 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 1e-04
Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 51/166 (30%)
Query: 7 KEGVIRDSNLYA-H----YVFKAFDVNCNGAISFRDLLVTLSTLLRGSIY-------EKL 54
+G+I +A H Y A + +S L+ + RG E
Sbjct: 1749 SKGLIPADATFAGHSLGEYA--AL-ASLADVMSIESLVEVVF--YRGMTMQVAVPRDELG 1803
Query: 55 RWTFKLYDINGDGC---ISRSELTQIVQAVHELMGRK----N------Q------TDAAR 95
R + + IN S+ L +V+ V + G N Q A
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 96 KAKEQIDFV-FRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCL 140
++F+ +K+D+ IE L+ S LE+ +E L
Sbjct: 1864 TVTNVLNFIKLQKIDI-----------IE--LQKSLSLEE-VEGHL 1895
Score = 33.9 bits (77), Expect = 0.015
Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 34/160 (21%)
Query: 16 LYAHYV-FKAFDVNCNGAISFRDLLVTL-----STLLRGS-IYEKLRWTF--KLYDINGD 66
L ++ + + V + F +L + L G+ I+ KL N
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----ALAAKLLQENDT 114
Query: 67 GCISRSELTQI-VQAVHELMGR--KNQTDAA--RKAKE-----------Q--IDFVFRKL 108
+ EL + + A + R ++++A R E Q D F +L
Sbjct: 115 TLVKTKELIKNYITARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 109 -DLNDDGVVTLEEFIESCLKVSTQLEKSIESCLKVSTQNL 147
DL V + + I+ + ++L ++ KV TQ L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 28.9 bits (64), Expect = 0.72
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 3 NVTSKEGVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYD 62
N+T G + + +Y F+ +G + + ++ +
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR---------- 1720
Query: 63 INGD-GCISRSELTQ--IV---QAVHELMGRKN---QTDAA 94
+ G +S ++ TQ + +A E + + DA
Sbjct: 1721 --SEKGLLSATQFTQPALTLMEKAAFEDL-KSKGLIPADAT 1758
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 3e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 31/131 (23%)
Query: 11 IRDSNLYAHYVFKAFDVNCNGAISFRDLLVT--LSTLLRGSIY-EKLRWTF--------- 58
++++ + AF+++C ++ R VT LS I + T
Sbjct: 253 VQNAK-----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 59 -KLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
K D E+ ++ + A D ++ ++ +
Sbjct: 308 LKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLAT-----WDN-WKHVNCD-----K 354
Query: 118 LEEFIESCLKV 128
L IES L V
Sbjct: 355 LTTIIESSLNV 365
Score = 31.7 bits (71), Expect = 0.094
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 29/114 (25%)
Query: 17 YAHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGD---GCISRSE 73
+ H+ F+ ++D+L + F D+ D +S+ E
Sbjct: 1 HHHHHHMDFETG-EHQYQYKDILSVFE--------DAFVDNFDCKDVQ-DMPKSILSKEE 50
Query: 74 LTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLK 127
+ I+ + + +F L + +V ++F+E L+
Sbjct: 51 IDHIIMSKDAV--------------SGTLRLFWTLLSKQEEMV--QKFVEEVLR 88
Score = 30.6 bits (68), Expect = 0.18
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 37/145 (25%)
Query: 10 VIRDSNLYAHYVFKAF--DV-NCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGD 66
V + FK F ++ NCN S +L L L LY I+ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCN---SPETVLEMLQKL--------------LYQIDPN 212
Query: 67 GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVV----TLEEFI 122
+ I +H + + ++ + + L L + V F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVL-LN--VQNAKAWNAFN 263
Query: 123 ESC--LKVSTQLEKSIESCLKVSTQ 145
SC L ++T+ K + L +T
Sbjct: 264 LSCKIL-LTTR-FKQVTDFLSAATT 286
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 38.4 bits (88), Expect = 3e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 54 LRWTFKLYDING-DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLND 112
+ W F D + DG +S +EL + + + F DL++
Sbjct: 157 VHWQFGQLDQHPIDGYLSHTELAPLRAPLI-------------PMEHCTTRFFETCDLDN 203
Query: 113 DGVVTLEEFIESCLKVS 129
D + L+E+ C +
Sbjct: 204 DKYIALDEWA-GCFGIK 219
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 36.3 bits (84), Expect = 5e-04
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 52 EKLRWTFKLYDINGDGCISRSELTQIVQAVHELMG-RKNQTDAARKAKEQIDFVFRKLDL 110
E + +TF + + G +++ +L +++ E G +NQ D +D + + LD
Sbjct: 9 ETMMFTFHKFAGD-KGYLTKEDLRVLMEK--EFPGFLENQKD-----PLAVDKIMKDLDQ 60
Query: 111 NDDGVVTLEEFI 122
DG V + F
Sbjct: 61 CRDGKVGFQSFF 72
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 35.8 bits (83), Expect = 7e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 52 EKLRWTFKLYDI-NGD-GCISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKL 108
+L+ F+ Y GD +S+ EL Q++QA L+ K +D +F++L
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLL----------KGPRTLDDLFQEL 56
Query: 109 DLNDDGVVTLEEFI 122
D N DG V+ EEF
Sbjct: 57 DKNGDGEVSFEEFQ 70
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 37.5 bits (86), Expect = 8e-04
Identities = 15/127 (11%), Positives = 49/127 (38%), Gaps = 36/127 (28%)
Query: 25 FDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQA---- 80
D + +G + ++ + + + +K + ++ D++ G ++ E+ + ++
Sbjct: 584 LDEDGSGKLGLKEFYILWTKI------QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFK 637
Query: 81 ----VHELMGRKNQTDAARKAKEQIDF---------------VFRKLDLNDDGVVTL--E 119
+H+++ + + IDF +F++LD + G + L
Sbjct: 638 LPCQLHQVIVAR-----FADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLI 692
Query: 120 EFIESCL 126
++ +
Sbjct: 693 SWLSFSV 699
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 52 EKLRWT--FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
EK ++ F D + DG +S E+ +I + ++ D
Sbjct: 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLK-------------TGLPSTLLAHIWSLCD 54
Query: 110 LNDDGVVTLEEFI 122
D G ++ ++F
Sbjct: 55 TKDCGKLSKDQFA 67
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 35.5 bits (82), Expect = 0.001
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 52 EKLRWT--FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
+L++ F +D G ++ + I+ + + Q+ ++ D
Sbjct: 12 SRLKYRQLFNSHDKTMSGHLTGPQARTILMQ-------------SSLPQAQLASIWNLSD 58
Query: 110 LNDDGVVTLEEFI 122
++ DG +T EEFI
Sbjct: 59 IDQDGKLTAEEFI 71
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 35.2 bits (81), Expect = 0.001
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 43 STLLRGSIYEKLRWTFKLY-DINGDGC-ISRSELTQIVQA-VHELMGRKNQTDAARKAKE 99
++ L ++ + + TF Y GD +++SEL +++ + +G++ +
Sbjct: 5 ASPLEKAL-DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKR-------TDEA 56
Query: 100 QIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLK 141
+ LD N D V +E+ ++ + E
Sbjct: 57 AFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMMSNEFFEGFPD 98
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 35.3 bits (81), Expect = 0.002
Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 41 TLSTLLRGSIYEKLRWTFKLYDINGDGC--ISRSELTQIVQA-VHELMGRKNQTDAARKA 97
+++ L ++ + + TF Y +++SEL +++ + +G++
Sbjct: 12 SMACPLEKAL-DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKR-------TD 63
Query: 98 KEQIDFVFRKLDLNDDGVVTLEEFIESCLKVSTQLEKSIESCLK 141
+ + LD N D V +E+ ++ + E
Sbjct: 64 EAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPD 107
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 35.7 bits (83), Expect = 0.003
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 26 DVNCNGAISFRD-LLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIV 78
N + F L + ++ + + CI+ +TQ +
Sbjct: 355 LGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYL 408
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 34.4 bits (79), Expect = 0.003
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 43 STLLRGSIYEKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMG-RKNQTDAARKAKE 99
+ L ++ + TF+ Y GD + ++EL +++Q EL + +
Sbjct: 2 ARPLEQAV-AAIVCTFQEYAGRCGDKYKLCQAELKELLQ--KELATWTPTEFR-----EC 53
Query: 100 QIDFVFRKLDLNDDGVVTLEEFI 122
+ LD N D V E++
Sbjct: 54 DYNKFMSVLDTNKDCEVDFVEYV 76
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 33.2 bits (76), Expect = 0.006
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 43 STLLRGSIYEKLRWTFKLYDINGDGC--ISRSELTQIVQA-VHELMGRKNQTDAARKAKE 99
+ L ++ + + TF Y +++SEL +++ + +G++ +
Sbjct: 2 ACPLEKAL-DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKR-------TDEA 53
Query: 100 QIDFVFRKLDLNDDGVVTLEEFI 122
+ LD N D V +E+
Sbjct: 54 AFQKLMSNLDSNRDNEVDFQEYC 76
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 32.4 bits (74), Expect = 0.013
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 52 EKLRWT--FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
++ + FK + +G I S + ++ ++ ++ D
Sbjct: 7 QRQYYVNQFKTIQPDLNGFIPGSAAKEFFTK-------------SKLPILELSHIWELSD 53
Query: 110 LNDDGVVTLEEFI 122
+ DG +TL+EF
Sbjct: 54 FDKDGALTLDEFC 66
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 32.4 bits (74), Expect = 0.015
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 51 YEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDL 110
Y F+ + IS S ++ + ++ +++ D
Sbjct: 24 YVNQ---FRSLQPDPSSFISGSVAKNFFTK-------------SKLSIPELSYIWELSDA 67
Query: 111 NDDGVVTLEEFI 122
+ DG +TL EF
Sbjct: 68 DCDGALTLPEFC 79
Score = 31.3 bits (71), Expect = 0.050
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 21 VFKAFDVNCNGAISFRDLLVTL--STLLRGSIYEKLRWTFKLYDINGDGCISRSE 73
F++ + + IS S L +L + ++L D + DG ++ E
Sbjct: 27 QFRSLQPDPSSFISGSVAKNFFTKSKLSI----PELSYIWELSDADCDGALTLPE 77
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 32.2 bits (73), Expect = 0.019
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 57 TFKLY-DINGDGC-ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG 114
TF Y G +++ E ++V+ +L N K ++ I+ + LD N D
Sbjct: 17 TFHQYSVKLGHPDTLNQGEFKELVRK--DLQ---NFLKKENKNEKVIEHIMEDLDTNADK 71
Query: 115 VVTLEEFI 122
++ EEFI
Sbjct: 72 QLSFEEFI 79
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 31.7 bits (72), Expect = 0.022
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 43 STLLRGSIYEKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMGRKNQTDAARKAKEQ 100
+ L +I L F Y GD +S+ EL +++Q EL + +
Sbjct: 2 AMPLDQAI-GLLVAIFHKYSGREGDKHTLSKKELKELIQK--ELTIGS------KLQDAE 52
Query: 101 IDFVFRKLDLNDDGVVTLEEFI 122
I + LD N D V +E++
Sbjct: 53 IARLMEDLDRNKDQEVNFQEYV 74
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 31.7 bits (72), Expect = 0.023
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 57 TFKLYDINGDGC---ISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKLDLND 112
F Y IS+S +++Q ++ ++ ++ D + + LD N
Sbjct: 16 NFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDT-------GNRKAADKLIQNLDANH 68
Query: 113 DGVVTLEEFI 122
DG ++ +E+
Sbjct: 69 DGRISFDEYW 78
Score = 25.9 bits (57), Expect = 3.1
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 21 VFKAF---DVNCNGAISFRDLLVTLSTLLRGSIYEK-----LRWTFKLYDINGDGCISRS 72
F + IS L L + + + D N DG IS
Sbjct: 16 NFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFD 75
Query: 73 E----LTQIVQAVHELMGRKNQ 90
E + I + +L+ + Q
Sbjct: 76 EYWTLIGGITGPIAKLIHEQEQ 97
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 31.7 bits (72), Expect = 0.024
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
+ + Y I G+ + R +L ++++ E K+ D F++LD
Sbjct: 10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLET--ES--------PQYIRKKGADVWFKELD 59
Query: 110 LNDDGVVTLEEFI 122
+N DG V +EF+
Sbjct: 60 INTDGAVNFQEFL 72
Score = 24.4 bits (53), Expect = 9.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 14 SNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLL 46
A FK D+N +GA++F++ L+ + +
Sbjct: 47 RKKGADVWFKELDINTDGAVNFQEFLILVIKMG 79
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 32.5 bits (73), Expect = 0.027
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 54 LRWTFKLYDING-DGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLND 112
+ W F D + DG +S +EL + + + F DL++
Sbjct: 79 VHWQFGQLDQHPIDGYLSHTELAPLRAPL-------------IPMEHCTTRFFETCDLDN 125
Query: 113 DGVVTLEEFIESCLKVS 129
D + L+E+ C +
Sbjct: 126 DKYIALDEWAG-CFGIK 141
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 31.3 bits (71), Expect = 0.030
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMG-RKNQTDAARKAKEQIDFVFRKL 108
E + F Y G +S+ EL Q++ EL KN D K ID +F+ L
Sbjct: 12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTK--ELANTIKNIKD-----KAVIDEIFQGL 64
Query: 109 DLNDDGVVTLEEFI 122
D N D V +EFI
Sbjct: 65 DANQDEQVDFQEFI 78
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 31.0 bits (70), Expect = 0.048
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 43 STLLRGSIYEKLRWTFKLY-DINGDGC-ISRSELTQIVQA-VHELMGRKNQTDAARKAKE 99
S+ L ++ L TF Y GD +S+ E+ +++ + +G K +E
Sbjct: 3 SSSLEQAL-AVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEK-------VDEE 54
Query: 100 QIDFVFRKLDLNDDGVVTLEEFI 122
+ + LD N D V +E+
Sbjct: 55 GLKKLMGSLDENSDQQVDFQEYA 77
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 31.0 bits (70), Expect = 0.049
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 43 STLLRGSIYEKLRWTFKLYDINGDGC--ISRSELTQIVQA-VHELMGRKNQTDAARKAKE 99
+ L G++ + L F Y + +S+ EL +++ A + + + +
Sbjct: 2 PSKLEGAM-DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPML------ 54
Query: 100 QIDFVFRKLDLNDDGVVTLEEFI 122
++ + LD N D V EF+
Sbjct: 55 -VEKIMNDLDSNKDNEVDFNEFV 76
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 30.6 bits (69), Expect = 0.063
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
E + TF + G +S +E ++V Q K +D + LD
Sbjct: 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVT---------QQLPHLLKDVGSLDEKMKSLD 72
Query: 110 LNDDGVVTLEEFI 122
+N D + E+
Sbjct: 73 VNQDSELKFNEYW 85
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative,
BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB:
3p0d_A
Length = 88
Score = 30.0 bits (68), Expect = 0.079
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCI 69
DVN +G ++ DL + +L+ K D+N DG +
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRV 67
Score = 26.9 bits (60), Expect = 1.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 57 TFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVV 116
+ D+N DG ++ ++LT + + V + + + A + A D+N DG V
Sbjct: 19 GRHMGDVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNA-----------DVNRDGRV 67
Query: 117 T 117
Sbjct: 68 N 68
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 30.1 bits (68), Expect = 0.081
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKL 108
E L F + GD +S+ EL ++Q + + + K + +D + ++L
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQ-------KDADAVDKIMKEL 61
Query: 109 DLNDDGVVTLEEFI 122
D N DG V +EF+
Sbjct: 62 DENGDGEVDFQEFV 75
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.8 bits (67), Expect = 0.13
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLYDINGDGC--ISRSELTQIVQAVHELMG-RKNQTDAARKAKEQIDFVFRKL 108
L F Y + +SEL +++ EL + + +E +D V L
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINN--ELSHFLEEIKE-----QEVVDKVMETL 61
Query: 109 DLNDDGVVTLEEFI 122
D N DG +EF+
Sbjct: 62 DSNGDGECDFQEFM 75
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.3 bits (66), Expect = 0.14
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 43 STLLRGSIYEKLRWTFKLY-DINGD-GCISRSELTQIVQAVHELMGRKNQTDAARKAKEQ 100
T L ++ + TF Y G +SR EL ++++ EL + +
Sbjct: 2 ETPLEKAL-TTMVTTFHKYSGREGSKLTLSRKELKELIK--KELC--LGEMK-----ESS 51
Query: 101 IDFVFRKLDLNDDGVVTLEEFI 122
ID + + LD N D + +E+
Sbjct: 52 IDDLMKSLDKNSDQEIDFKEYS 73
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 29.4 bits (66), Expect = 0.17
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQAVHELMGR-KNQTDAARKAKEQIDFVFRKL 108
E L F+ + +G+ IS++E + EL +NQ D +D + +KL
Sbjct: 13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMN--TELAAFTQNQKD-----PGVLDRMMKKL 65
Query: 109 DLNDDGVVTLEEFI 122
DL+ DG + +EF+
Sbjct: 66 DLDSDGQLDFQEFL 79
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.0 bits (65), Expect = 0.20
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 52 EKLRWTFKLY-DINGDGC-ISRSELTQIVQA-VHELMGRKNQTDAARKAKEQIDFVFRKL 108
+ F Y G +++ EL +++ + + K K+ +D + + L
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSG-------KDKDAVDKLLKDL 61
Query: 109 DLNDDGVVTLEEFI 122
D N D V EFI
Sbjct: 62 DANGDAQVDFSEFI 75
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 29.0 bits (65), Expect = 0.21
Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 49 SIYEKLRWTFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKL 108
+YEK ++ + G + + ++ + + ++
Sbjct: 11 PVYEKY---YRQVEAGNTGRVLALDAAAFLKK-------------SGLPDLILGKIWDLA 54
Query: 109 DLNDDGVVTLEEFI 122
D + GV++ +EF
Sbjct: 55 DTDGKGVLSKQEFF 68
Score = 26.3 bits (58), Expect = 2.3
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 21 VFKAFDVNCNGAIS---FRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSEL 74
++ + G + L S L L + L D +G G +S+ E
Sbjct: 16 YYRQVEAGNTGRVLALDAAAFLKK-SGLPD----LILGKIWDLADTDGKGVLSKQEF 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.22
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 47 RGSIYEKLRWTFKLY--DINGDGCISRSELTQIVQAVHE 83
+ ++ +KL+ + KLY D S L ++A E
Sbjct: 19 KQAL-KKLQASLKLYADD-------SAPALA--IKATME 47
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 28.3 bits (64), Expect = 0.25
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 62 DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
D+NGDG I+ ++LT + ++ ++ TD A+ D++ +G +
Sbjct: 6 DVNGDGTINSTDLTMLKRS---VLRAITLTDDAKAR----------ADVDKNGSIN 48
Score = 27.9 bits (63), Expect = 0.33
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
DVN +G I+ DL + ++LR D++ +G I+ +++ + +
Sbjct: 6 DVNGDGTINSTDLTMLKRSVLR--AITLTDDAKARADVDKNGSINAADVLLLSR 57
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 29.5 bits (66), Expect = 0.28
Identities = 13/113 (11%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 18 AHYVFKAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQI 77
+ ++ NG + + L + F+ + G + S+L +
Sbjct: 48 CRSLVALMELKVNGRLDQEEFARLWKRL------VHYQHVFQKVQTSP-GVLLSSDLWKA 100
Query: 78 VQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVTLEEFIESCLKVST 130
++ L G ++E + V + + G V+ + +++
Sbjct: 101 IENTDFLRGI-------FISRELLHLVTLRYS-DSVGRVSFPSLVCFLMRLEA 145
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 28.0 bits (63), Expect = 0.32
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 62 DINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVVT 117
D+NGDG I+ +++ + Q+ KA DLN+DGV+
Sbjct: 8 DLNGDGVINMADVMILAQS---FGKAIGNPGVNEKA-----------DLNNDGVIN 49
Score = 28.0 bits (63), Expect = 0.33
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
D+N +G I+ D+++ + + + D+N DG I+ + + Q
Sbjct: 8 DLNGDGVINMADVMILAQSFGKAIGNPG---VNEKADLNNDGVINSDDAIILAQ 58
Score = 26.1 bits (58), Expect = 1.7
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 23 KAFDVNCNGAISFRDLLVTLSTLLRGSIYEKLRW 56
+ D+N +G I+ D ++ + E + +
Sbjct: 38 EKADLNNDGVINSDDAIILAQYFGKTKSAEVVMF 71
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 27.5 bits (62), Expect = 0.50
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCISRSELTQIVQ 79
DVN +G ++ D V L + S D+N DG ++ ++L + +
Sbjct: 8 DVNDDGKVNSTD-AVALKRYVLRSGISI---NTDNADLNEDGRVNSTDLGILKR 57
Score = 27.1 bits (61), Expect = 0.65
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 15/61 (24%)
Query: 57 TFKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDGVV 116
T D+N DG ++ ++ + + V N +A DLN+DG V
Sbjct: 3 TKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNA---------------DLNEDGRV 47
Query: 117 T 117
Sbjct: 48 N 48
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 28.2 bits (63), Expect = 0.51
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 52 EKLRWT--FKLYDINGDGCISRSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLD 109
+K ++ F +G +S ++ ++ ++ + + V+ D
Sbjct: 13 DKAKYDAIFDSLS-PVNGFLSGDKVKPVLLN-------------SKLPVDILGRVWELSD 58
Query: 110 LNDDGVVTLEEFIESCLKVSTQLEK 134
++ DG++ +EF + V LEK
Sbjct: 59 IDHDGMLDRDEFAVAMFLVYCALEK 83
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 0.91
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 90 QTDAARKAKEQIDFVFRKLDLNDDGVVTLEE 120
T+ R + E + + +++D + DG + +EE
Sbjct: 6 STEEDRFSLEALQTIHKQMDDDKDGGIEVEE 36
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 27.7 bits (61), Expect = 0.97
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 91 TDAARKAKEQIDFVFRKLDLNDDGVVTLEE---FIESCLKVSTQLEKS 135
++ + + E + + + +D + +G V +EE F+ L K
Sbjct: 7 SEDEKLSFEAVRNIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKH 54
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 26 DVNCNGAISFRDLLVTLSTLLRGSIYEKLRWTFKLYDINGDGCI 69
D N +G + D L+ I K D+N D +
Sbjct: 6 DYNNDGNVDSTDF-----AGLKKYIMAADHAYVKNLDVNLDNEV 44
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis
receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A
{Vibrio parahaemolyticus}
Length = 146
Score = 25.8 bits (57), Expect = 5.2
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG 114
+ EL + + +D K+ + + + DG
Sbjct: 15 KKELKAYMMMGVTAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 58
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1
PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G*
2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Length = 151
Score = 25.6 bits (56), Expect = 5.8
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 54 LRWTFKLYDINGDGCISR 71
L+W K G G I R
Sbjct: 126 LQWHEKALAAGGVGSIVR 143
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 25.4 bits (56), Expect = 6.8
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 71 RSELTQIVQAVHELMGRKNQTDAARKAKEQIDFVFRKLDLNDDG 114
+ EL + + +D K+ + + + DG
Sbjct: 22 KKELKAYMMMGVTAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 65
>2iiz_A Melanin biosynthesis protein TYRA, putative; NP_716371.1,
putative melanin biosynthesis protein TYRA, STR
genomics, PSI-2; HET: MSE HEM; 2.30A {Shewanella
oneidensis} SCOP: d.58.4.14 PDB: 2hag_A*
Length = 312
Score = 25.6 bits (56), Expect = 6.8
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 9 GVIRDSNLYAHYVFKAFDVNCNGAISFRDLLVTLSTLLR 47
GV + NL++ Y+ F+ N N R + ++ +
Sbjct: 13 GVCAEGNLHSVYL--MFNANDNVESQLRPCIANVAQYIY 49
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 152
Score = 25.2 bits (55), Expect = 8.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 54 LRWTFKLYDINGDGCISR 71
L W K+ +I+G GCI R
Sbjct: 127 LNWHEKVVEISGIGCIVR 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,164,855
Number of extensions: 118452
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 418
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)