BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12169
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFG 60
+G +FG SI +M MI+ DRY VI + + A K M+ A + ++FVW+ ++LW + P FG
Sbjct: 113 IGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG 172
Query: 61 WNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120
W Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+
Sbjct: 173 WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE 232
Query: 121 MREQAKKMNVATLRSGDQSGTSA 143
M AK++N LR Q+G +A
Sbjct: 233 MAAMAKRLNAKELRKA-QAGANA 254
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 136 GDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVS 195
G G AY EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS
Sbjct: 168 GPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVS 227
Query: 196 VHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKV 230
HEK+M AK++N LR Q+G +AE++LAK+
Sbjct: 228 NHEKEMAAMAKRLNAKELRKA-QAGANAEMRLAKI 261
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFG 60
+G +FG SI +M MI+ DRY VI + + A K M+ A + ++FVW+ ++LW + P FG
Sbjct: 114 IGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG 173
Query: 61 WNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120
W Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+
Sbjct: 174 WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE 233
Query: 121 MREQAKKMNVATLRSGDQSGTSA 143
M AK++N LR Q+G +A
Sbjct: 234 MAAMAKRLNAKELRKA-QAGANA 255
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 136 GDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVS 195
G G AY EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS
Sbjct: 169 GPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVS 228
Query: 196 VHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKV 230
HEK+M AK++N LR Q+G +AE++LAK+
Sbjct: 229 NHEKEMAAMAKRLNAKELRKA-QAGANAEMRLAKI 262
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 117 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 176
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 119 KQMREQA 125
Q +E A
Sbjct: 236 AQQQESA 242
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 233
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 234 AAAQQQESA 242
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 116 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 175
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 176 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 234
Query: 119 KQMREQA 125
Q +E A
Sbjct: 235 AQQQESA 241
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 174 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 232
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 233 AAAQQQESA 241
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 117 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 176
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 119 KQMREQA 125
Q +E A
Sbjct: 236 AQQQESA 242
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 233
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 234 AAAQQQESA 242
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 116 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 175
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 176 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 234
Query: 119 KQMREQA 125
Q +E A
Sbjct: 235 AQQQESA 241
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 174 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 232
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 233 AAAQQQESA 241
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 117 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 176
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 119 KQMREQA 125
Q +E A
Sbjct: 236 AQQQESA 242
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 233
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 234 AAAQQQESA 242
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGW 61
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P GW
Sbjct: 117 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW 176
Query: 62 NRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHE 118
+RY+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 119 KQMREQA 125
Q +E A
Sbjct: 236 AQQQESA 242
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSV 196
G S Y+PEG +CG DY T ++ ++ S++I Y F V+F +PLI+I + Y +V V
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKE 233
Query: 197 HEKQMREQA 205
Q +E A
Sbjct: 234 AAAQQQESA 242
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITAKPMTIGG-ALLRLMFVWVHALLWTLFPFFGWNRY--V 65
+SI+S++ IA DRY I + + G A + WV + L P GWN
Sbjct: 90 SSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQP 149
Query: 66 PEG--NLTACG---TDYLTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEK 119
EG + CG L +D +Y++++ FF VPL+L++ Y I A K
Sbjct: 150 KEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLK 209
Query: 120 QMREQAKKMNVA--TLRSGDQSGTSAYVPEGNLTAC 153
QM Q A TL+ + SA + G C
Sbjct: 210 QMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALC 245
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 158 LTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVA--TLR 214
L +D +Y++++ FF VPL+L++ Y I A KQM Q A TL+
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQ 226
Query: 215 SGDQSGTSAEI 225
+ SA I
Sbjct: 227 KEVHAAKSAAI 237
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 9 TSIWSMVMIAFDRYTVI---------VKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF 59
+SI+S++ IA DRY I V G AK + + WV + L P
Sbjct: 90 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGI--------IAICWVLSFAIGLTPML 141
Query: 60 GWNRY--VPEGNL--TACG---TDYLTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIV 111
GWN EG CG L +D +Y++++ FF VPL+L++ Y I
Sbjct: 142 GWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIF 201
Query: 112 RAVSVHEKQMREQ 124
A KQM Q
Sbjct: 202 LAARRQLKQMESQ 214
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 158 LTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 216
L +D +Y++++ FF VPL+L++ Y I A KQM Q A RS
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERA--RST 224
Query: 217 DQSGTSAEIKLAKVRSPPTMTTMTYILVN---FYISGASHS 254
Q A LA + + + ++N F+ SH+
Sbjct: 225 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHA 265
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 9 TSIWSMVMIAFDRYTVI---------VKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF 59
+SI+S++ IA DRY I V G AK + + WV + L P
Sbjct: 90 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGI--------IAICWVLSFAIGLTPML 141
Query: 60 GWNRY--VPEGNL--TACG---TDYLTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIV 111
GWN EG CG L +D +Y++++ FF VPL+L++ Y I
Sbjct: 142 GWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIF 201
Query: 112 RAVSVHEKQMREQ 124
A KQM Q
Sbjct: 202 LAARRQLKQMESQ 214
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 129 NVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFF-VYFVPLILIIYAY 187
N + G Q S EG + AC L +D +Y++++ FF VPL+L++ Y
Sbjct: 145 NCGQPKEGKQH--SQGCGEGQV-AC----LFEDVVPMNYMVYFNFFACVLVPLLLMLGVY 197
Query: 188 YFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVN-- 245
I A KQM Q A RS Q A LA + + + ++N
Sbjct: 198 LRIFLAARRQLKQMESQPLPGERA--RSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCF 255
Query: 246 -FYISGASHS 254
F+ SH+
Sbjct: 256 TFFCPDCSHA 265
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 10 SIWSMVMIAFDRYTVIVKGITAKPM-TIGGALLRLMFVWVHALLWTLFPF-FGWNRYVPE 67
SI ++ +IA DRY I + + T A + ++ VW+ + L + P W R +
Sbjct: 120 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 179
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 127
+ + + +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 180 EAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 239
Query: 128 MNVATLRSGDQSGTSAY 144
+V L +Q G + +
Sbjct: 240 FHVQNLSQVEQDGRTGH 256
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 10 SIWSMVMIAFDRYTVIVKGITAKPM-TIGGALLRLMFVWVHALLWTLFPF-FGWNRYVPE 67
SI ++ +IA DRY I + + T A + ++ VW+ + L + P W R +
Sbjct: 97 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 156
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 127
+ + + +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 157 EAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 216
Query: 128 MNVATLRSGDQSGTSAY 144
+V L +Q G + +
Sbjct: 217 FHVQNLSQVEQDGRTGH 233
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 10 SIWSMVMIAFDRYTVIVKGITAKP-MTIGGALLRLMFVWVHALLWTLFPF-FGWNRYVPE 67
SIW++ +IA DRY I + +T A + ++ VW+ + L + P W R +
Sbjct: 128 SIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAY 107
+ + + +++Y I ++VPL+++++ Y
Sbjct: 188 EAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVY 227
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 10 SIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFP--FFGWNRYVPE 67
SI+SM +AFDRY I+ + + ++ + + +WV ALL FP ++ +P
Sbjct: 119 SIYSMTAVAFDRYMAIIHPLQPR-LSATATKVVICVIWVLALLLA-FPQGYYSTTETMPS 176
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAY 107
+ + + Y I +YF+PL++I YAY
Sbjct: 177 RVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAY 216
>pdb|1EDV|A Chain A, Solution Structure Of 2nd Intradiskal Loop Of Bovine
Rhodopsin (Residues 172-205)
Length = 34
Score = 35.0 bits (79), Expect = 0.043, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 60 GWNRYVPEGNLTACGTDYLT--KDWHHRSYLI 89
GW+RY+PEG +CG DY T ++ ++ S++I
Sbjct: 3 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI 34
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLI 169
G S Y+PEG +CG DY T ++ ++ S++I
Sbjct: 3 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI 34
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 3 GSLFGC--TSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFV----WVHALLWTLF 56
GS+F S++S++ IA +RY ++K + G RL + WV +L+
Sbjct: 140 GSMFVALSASVFSLLAIAIERYITMLK----MKLHNGSNNFRLFLLISACWVISLILGGL 195
Query: 57 PFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFY-GFFVYFVPLILIIYA-YYFIVRAV 114
P GWN L++C T +H+ Y++F F + I+I+Y Y +VR
Sbjct: 196 PIMGWNCI---SALSSCST---VLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTR 249
Query: 115 SVHEKQMREQAKKMNV 130
++ E ++ ++ +
Sbjct: 250 NIFEMLRIDEGLRLKI 265
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMF----VWVHALLWTLFPFFGWN 62
CT SIW++ I+ DRYT +V + + T + R+ VWV A + FG+N
Sbjct: 123 CTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFN 182
Query: 63 RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVP--LILIIYAYYFIV 111
G+ T C + ++I+ +++P + +++YA ++V
Sbjct: 183 ---TTGDPTVCSIS-------NPDFVIYSSVVSFYLPFGVTVLVYARIYVV 223
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITAKP-MTIGGALLRLMFVWVHALLWTLFPFFG--WNRYV 65
SI ++ +IA DRY I + MT A + + VW + L + P W
Sbjct: 97 ASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDED 156
Query: 66 PEGNLTACGTDYLTKDW-HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 124
P+ C D D+ +R+Y I +++PL+++I+ + R +++
Sbjct: 157 PQA--LKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRA 214
Query: 125 AKKMNVATLRS 135
+K+ V +R
Sbjct: 215 SKRKRVMLMRE 225
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 10 SIWSMVMIAFDRYTVIVKGITAKP-MTIGGALLRLMFVWVHALLWTLFPFFG--WNRYVP 66
SI ++ +IA DRY I + MT A + + VW + L + P W P
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP 157
Query: 67 EGNLTACGTDYLTKDW-HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQA 125
+ C D D+ +R+Y I +++PL+++I+ A+ V+ ++ +EQ
Sbjct: 158 QA--LKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFV------ALRVY-REAKEQI 208
Query: 126 KKMNVATLRSGDQ 138
+K++ A+ R +
Sbjct: 209 RKIDRASKRKTSR 221
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPF 58
+S+W + I+ DRY IV + +P + + + VW+ ALL T+ F
Sbjct: 132 SSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPF 58
+S+W + I+ DRY IV + +P + + + VW+ ALL T+ F
Sbjct: 132 SSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPF 58
+S+W + I+ DRY IV + +P + + + VW+ ALL T+ F
Sbjct: 132 SSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,894,702
Number of Sequences: 62578
Number of extensions: 307130
Number of successful extensions: 709
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 43
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)