Query psy12169
Match_columns 263
No_of_seqs 175 out of 2495
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 20:27:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 8.4E-25 1.8E-29 171.9 5.8 196 1-211 113-336 (423)
2 PHA03235 DNA packaging protein 99.9 4.8E-22 1E-26 164.5 9.6 180 4-206 113-319 (409)
3 PHA02834 chemokine receptor-li 99.9 2.1E-21 4.5E-26 157.2 10.7 179 4-209 106-308 (323)
4 PHA03234 DNA packaging protein 99.9 2.6E-21 5.7E-26 156.7 9.8 179 3-206 112-312 (338)
5 PF00001 7tm_1: 7 transmembran 99.8 2.9E-20 6.3E-25 145.6 9.5 116 3-120 64-181 (257)
6 PHA02638 CC chemokine receptor 99.8 3.5E-19 7.6E-24 148.1 11.8 181 5-208 177-395 (417)
7 KOG4220|consensus 99.8 5.3E-19 1.2E-23 139.5 6.2 118 2-123 109-229 (503)
8 PHA03087 G protein-coupled che 99.8 3.5E-18 7.6E-23 139.4 10.4 183 4-209 119-322 (335)
9 KOG2087|consensus 99.6 5.5E-15 1.2E-19 115.7 7.1 180 1-206 109-302 (363)
10 PF10323 7TM_GPCR_Srv: Serpent 98.5 3.1E-07 6.8E-12 73.0 6.6 107 8-119 87-195 (283)
11 PF10324 7TM_GPCR_Srw: Serpent 98.3 2.2E-05 4.8E-10 63.8 13.5 119 5-123 87-228 (318)
12 PF10320 7TM_GPCR_Srsx: Serpen 98.3 4.5E-06 9.8E-11 65.5 8.2 106 5-119 70-176 (257)
13 PF10328 7TM_GPCR_Srx: Serpent 98.2 2.1E-05 4.6E-10 62.4 10.0 110 8-120 79-190 (274)
14 PHA03234 DNA packaging protein 98.1 6.3E-06 1.4E-10 67.3 6.7 55 173-249 203-261 (338)
15 KOG4219|consensus 98.0 3.9E-06 8.4E-11 67.6 2.2 74 169-252 211-288 (423)
16 PHA03235 DNA packaging protein 97.9 2E-05 4.3E-10 66.0 6.0 61 168-250 205-269 (409)
17 PHA02834 chemokine receptor-li 97.9 2.1E-05 4.4E-10 64.1 4.6 57 172-250 194-254 (323)
18 PHA02638 CC chemokine receptor 97.7 7.4E-05 1.6E-09 62.9 5.6 58 171-250 277-338 (417)
19 PHA03087 G protein-coupled che 97.3 0.00084 1.8E-08 55.0 6.5 57 172-249 208-268 (335)
20 PF11710 Git3: G protein-coupl 97.1 0.006 1.3E-07 45.9 9.0 109 4-120 82-200 (201)
21 PF02118 Srg: Srg family chemo 97.1 0.0017 3.7E-08 51.6 6.4 111 4-118 89-199 (275)
22 KOG4220|consensus 96.6 0.00059 1.3E-08 55.6 0.0 34 221-254 409-446 (503)
23 PF10316 7TM_GPCR_Srbc: Serpen 95.4 0.19 4.1E-06 39.8 9.3 30 8-37 93-122 (273)
24 PF05296 TAS2R: Mammalian tast 95.2 0.1 2.2E-06 42.1 7.4 119 5-124 91-217 (303)
25 PF10321 7TM_GPCR_Srt: Serpent 95.1 0.18 3.9E-06 40.8 8.3 107 8-120 118-228 (313)
26 PF10292 7TM_GPCR_Srab: Serpen 95.0 0.3 6.5E-06 39.9 9.8 48 5-52 105-152 (324)
27 PF03383 Serpentine_r_xa: Caen 94.7 0.017 3.7E-07 40.9 1.4 55 6-60 54-109 (153)
28 PF04789 DUF621: Protein of un 92.6 1.1 2.3E-05 35.2 8.0 109 6-115 100-214 (305)
29 PF10322 7TM_GPCR_Sru: Serpent 91.4 0.91 2E-05 36.7 6.8 112 4-118 111-226 (307)
30 PF02175 7TM_GPCR_Srb: Serpent 91.0 5.2 0.00011 30.7 10.0 28 5-32 94-121 (236)
31 PF02101 Ocular_alb: Ocular al 87.0 16 0.00036 30.3 11.8 43 8-55 128-170 (405)
32 PF05462 Dicty_CAR: Slime mold 85.9 10 0.00023 30.7 9.3 68 3-76 82-149 (303)
33 PF05296 TAS2R: Mammalian tast 85.0 4.2 9.1E-05 32.9 6.8 68 172-247 185-252 (303)
34 PF13853 7tm_4: Olfactory rece 84.8 0.041 8.8E-07 39.1 -4.3 78 40-117 4-87 (144)
35 PF10317 7TM_GPCR_Srd: Serpent 81.6 26 0.00055 28.2 10.6 50 6-59 92-141 (292)
36 PF10326 7TM_GPCR_Str: Serpent 77.3 1 2.2E-05 36.4 0.8 26 91-116 200-225 (307)
37 PF01534 Frizzled: Frizzled/Sm 74.7 45 0.00098 27.4 9.4 71 5-77 103-173 (328)
38 KOG4193|consensus 73.6 19 0.00041 32.3 7.5 99 6-117 396-495 (610)
39 PF15086 UPF0542: Uncharacteri 72.8 19 0.0004 21.9 6.4 40 87-126 20-60 (74)
40 PF00002 7tm_2: 7 transmembran 68.8 1.6 3.5E-05 33.8 0.0 51 6-59 82-132 (242)
41 PF05241 EBP: Emopamil binding 68.5 11 0.00025 28.2 4.5 36 83-118 157-192 (194)
42 PF11970 Git3_C: G protein-cou 67.7 11 0.00024 23.3 3.6 29 221-249 4-37 (76)
43 KOG2087|consensus 66.1 3 6.4E-05 34.2 1.0 56 176-250 201-260 (363)
44 PF02117 7TM_GPCR_Sra: Serpent 64.9 24 0.00051 29.0 6.0 24 8-31 113-136 (328)
45 PF02076 STE3: Pheromone A rec 62.1 82 0.0018 25.3 10.2 49 11-59 72-124 (283)
46 PF06681 DUF1182: Protein of u 61.2 19 0.0004 27.2 4.3 16 15-30 136-151 (226)
47 PF10324 7TM_GPCR_Srw: Serpent 60.8 26 0.00057 28.3 5.7 63 176-250 201-267 (318)
48 PF10327 7TM_GPCR_Sri: Serpent 57.9 1E+02 0.0022 25.0 9.1 110 12-121 106-227 (303)
49 COG1862 YajC Preprotein transl 54.6 37 0.0008 22.2 4.4 29 98-126 14-42 (97)
50 COG4736 CcoQ Cbb3-type cytochr 53.6 45 0.00097 19.6 4.7 37 91-127 7-43 (60)
51 PF10323 7TM_GPCR_Srv: Serpent 52.4 1E+02 0.0022 24.6 7.6 60 183-254 179-241 (283)
52 PF03125 Sre: C. elegans Sre G 51.6 1.1E+02 0.0025 25.5 8.0 28 8-35 135-162 (365)
53 PF02076 STE3: Pheromone A rec 46.2 1.6E+02 0.0034 23.8 14.0 42 34-75 19-61 (283)
54 PF10325 7TM_GPCR_Srz: Serpent 46.0 1.5E+02 0.0032 23.4 7.8 44 10-53 96-141 (267)
55 PF10318 7TM_GPCR_Srh: Serpent 43.3 1.7E+02 0.0037 23.4 9.7 51 8-59 97-147 (302)
56 COG3924 Predicted membrane pro 40.9 84 0.0018 19.2 5.1 23 92-114 47-69 (80)
57 PF03402 V1R: Vomeronasal orga 40.8 33 0.00072 27.2 3.1 113 6-122 58-182 (265)
58 TIGR00739 yajC preprotein tran 36.3 92 0.002 19.7 4.1 29 98-126 7-36 (84)
59 PF06305 DUF1049: Protein of u 35.6 96 0.0021 18.3 6.6 36 88-123 24-59 (68)
60 PRK06531 yajC preprotein trans 30.9 1.1E+02 0.0023 20.8 3.9 20 98-117 7-26 (113)
61 PF11119 DUF2633: Protein of u 30.1 37 0.00081 19.8 1.4 33 222-254 4-37 (59)
62 PF10319 7TM_GPCR_Srj: Serpent 29.0 3.2E+02 0.007 22.4 8.8 25 18-42 110-135 (310)
63 PF04505 Dispanin: Interferon- 26.5 21 0.00046 22.5 -0.0 19 235-253 27-45 (82)
64 PF14362 DUF4407: Domain of un 25.5 1.8E+02 0.0039 23.5 5.1 23 8-30 51-73 (301)
65 PF02699 YajC: Preprotein tran 25.0 1.4E+02 0.003 18.8 3.5 19 101-119 10-28 (82)
66 PRK05886 yajC preprotein trans 23.9 2.4E+02 0.0051 19.0 4.8 24 96-119 6-30 (109)
67 COG3771 Predicted membrane pro 23.4 2.1E+02 0.0046 18.3 9.4 41 88-128 45-85 (97)
68 KOG1380|consensus 22.3 35 0.00075 27.8 0.4 23 41-63 220-242 (409)
69 PF05545 FixQ: Cbb3-type cytoc 22.3 1.5E+02 0.0033 16.3 4.6 22 98-119 14-35 (49)
70 PRK05585 yajC preprotein trans 21.9 2.5E+02 0.0055 18.7 4.6 27 99-125 23-50 (106)
71 COG4068 Uncharacterized protei 21.1 49 0.0011 19.2 0.7 7 235-241 56-62 (64)
No 1
>KOG4219|consensus
Probab=99.91 E-value=8.4e-25 Score=171.89 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=134.2
Q ss_pred CccccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccC----CCcceeccc
Q psy12169 1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE----GNLTACGTD 76 (263)
Q Consensus 1 f~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~C~~~ 76 (263)
|+..++.++|+++|++||+|||.||.||++.| .+++.+.++++++|++++++++|..+..+..... .....|...
T Consensus 113 f~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~ 191 (423)
T KOG4219|consen 113 FFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA 191 (423)
T ss_pred ccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence 56778899999999999999999999999976 7899999999999999999999966644332221 113367665
Q ss_pred ccCC--c-c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCcc
Q psy12169 77 YLTK--D-W----HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGN 149 (263)
Q Consensus 77 ~~~~--~-~----~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (263)
|+.+ . . ....|......+.+++|++++..+|..|.+.++..+.. +++.. .. .+..+..++
T Consensus 192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~-gd~~d----------~~--~~~~kak~K 258 (423)
T KOG4219|consen 192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIP-GDQQD----------RK--HEQLKAKKK 258 (423)
T ss_pred cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCc-cchhc----------hh--hHHHHHHHH
Confidence 5443 1 1 11338888889999999999999999999999875311 11100 00 001111222
Q ss_pred ceeeee---eeeecccchhhHHHHHhHhh--------------hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCC
Q psy12169 150 LTACGT---DYLTKDWHHRSYLIFYGFFV--------------YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVA 211 (263)
Q Consensus 150 ~~~~~~---~~~~~~~~p~~~~~~~~~~~--------------~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~ 211 (263)
..+++. ..+..||+|+....+..... ...-++.-..||||++|.+. |.+++.++++.+++.
T Consensus 259 ~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~l-N~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 259 VVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFL-NKRFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhh-HHHHHHHHhhhhhee
Confidence 333333 33459999986554443211 12223445779999999999 888888888877654
No 2
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.87 E-value=4.8e-22 Score=164.52 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=118.4
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcc-----ccc-CCCcceecccc
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNR-----YVP-EGNLTACGTDY 77 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~-----~~~-~~~~~~C~~~~ 77 (263)
.+++.+|+++|++||+|||++|++|.+.+..+++++..+++++|+.++++++|+.+.... ..+ ..+...|...+
T Consensus 113 ~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~ 192 (409)
T PHA03235 113 YASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYF 192 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeC
Confidence 456789999999999999999999987555678889999999999999999997653221 111 12344686554
Q ss_pred cCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceeeee
Q psy12169 78 LTKDW--HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGT 155 (263)
Q Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
..+.. ....|.++..++.|++|+++|++||.+|++.++++.++. .++ ..+.....+
T Consensus 193 ~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~~-------------------~~k---~~~~v~iiv 250 (409)
T PHA03235 193 RADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYKK-------------------RSR---TLTFVCILL 250 (409)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------------------chh---hhhhHHHHH
Confidence 43321 123456666777899999999999999999998753310 000 111212223
Q ss_pred eeeecccchhhHHHHHhHhh-----------------hhh--hhhHHHHHHHHHHHHHhccHHHHHHHHH
Q psy12169 156 DYLTKDWHHRSYLIFYGFFV-----------------YFV--PLILIIYAYYFIVRAVSVHEKQMREQAK 206 (263)
Q Consensus 156 ~~~~~~~~p~~~~~~~~~~~-----------------~~~--P~~~~~~~y~~i~~~~~~~~~~~~~~~~ 206 (263)
..+..||.|+..+.....+. ..+ -+.....++||++|.+. +++++++.++
T Consensus 251 v~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~-~~~FRk~~~~ 319 (409)
T PHA03235 251 LSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFL-GNDFLKRFRQ 319 (409)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHh-hHHHHHHHHH
Confidence 34558999987665443211 001 12234667899999998 5666665543
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=157.16 Aligned_cols=179 Identities=15% Similarity=0.223 Sum_probs=117.5
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCcc-
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDW- 82 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~- 82 (263)
.++..+|+++|++||+|||++|++|++++..+.+++..+++++|+.+++.++|+++++... ..++...|......++.
T Consensus 106 ~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~-~~~~~~~C~~~~~~~~~~ 184 (323)
T PHA02834 106 FVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVD-NTDNLKQCIFNDYHENFS 184 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhc-cCCCceEEeccCCccchH
Confidence 3456689999999999999999999985444566777888899999999999987765432 22233468643222221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceee---eeeeee
Q psy12169 83 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTAC---GTDYLT 159 (263)
Q Consensus 83 ~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 159 (263)
....+.....+..|++|+++|+++|.+|+++++++.++ . +.+..+. .+..+.
T Consensus 185 ~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~----------------------~---~~k~~k~~~~vv~~F~ 239 (323)
T PHA02834 185 WSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNK----------------------N---KTRSIKIILTVVTFTV 239 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------------------c---cceEEeehhHHHHHHH
Confidence 11123334457789999999999999999988764210 0 1122332 233344
Q ss_pred cccchhhHHHHHhHhhh----------h----------hhhhHHHHHHHHHHHHHhccHHHHHHHHHhCC
Q psy12169 160 KDWHHRSYLIFYGFFVY----------F----------VPLILIIYAYYFIVRAVSVHEKQMREQAKKMN 209 (263)
Q Consensus 160 ~~~~p~~~~~~~~~~~~----------~----------~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~ 209 (263)
.||.|+........+.. . ..+.....+.||++|... +++++++.++..+
T Consensus 240 icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~-~~~fR~~~~~~~~ 308 (323)
T PHA02834 240 VFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFV-GKNFKKVFKNMFC 308 (323)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHh-cHHHHHHHHHHHH
Confidence 89999876654332210 0 011223456699999999 8888888876553
No 4
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.85 E-value=2.6e-21 Score=156.72 Aligned_cols=179 Identities=11% Similarity=0.026 Sum_probs=111.9
Q ss_pred cccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCcc
Q psy12169 3 GSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDW 82 (263)
Q Consensus 3 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 82 (263)
..+..++|+++|++||+|||+||++|.+.+. +.++....+++.|+.+++.++|+++.......+.+...|...++.++.
T Consensus 112 ~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~-~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~ 190 (338)
T PHA03234 112 YHASCSYSICMLAIIATIRYKTLHRRKKNDK-KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKA 190 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHeeeechhhhhh-hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchh
Confidence 4567889999999999999999999987542 334444566667999999999987644332222233469776643321
Q ss_pred chhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceeeeeeeee
Q psy12169 83 HHRSYL---IFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLT 159 (263)
Q Consensus 83 ~~~~~~---~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (263)
...+. ......+|++|+++|.+||.+|.+.++++..+ + +++ ..+.....+..+.
T Consensus 191 -~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~~------~-------------~~k---~~k~i~~vv~vF~ 247 (338)
T PHA03234 191 -YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTEK------K-------------HKK---TLFFIRILILSFL 247 (338)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------h-------------hhh---hhhHHHHHHHHHH
Confidence 11121 12233457899999999999999988653110 0 000 1222223344555
Q ss_pred cccchhhHHHHHhHhh-------------------hhhhhhHHHHHHHHHHHHHhccHHHHHHHHH
Q psy12169 160 KDWHHRSYLIFYGFFV-------------------YFVPLILIIYAYYFIVRAVSVHEKQMREQAK 206 (263)
Q Consensus 160 ~~~~p~~~~~~~~~~~-------------------~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~ 206 (263)
.||.|+..+....... ....+.....|.||++|... +++++++..+
T Consensus 248 iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~-~~~FR~~~~~ 312 (338)
T PHA03234 248 CIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFT-GGDFRLRFTA 312 (338)
T ss_pred HHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh-hHHHHHHHHH
Confidence 8999987655432110 01112334567899999998 6777766553
No 5
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.83 E-value=2.9e-20 Score=145.56 Aligned_cols=116 Identities=25% Similarity=0.462 Sum_probs=94.5
Q ss_pred cccccHHHHHHHHHHHHHHhHHhhcCCCcc-cccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCC-cceecccccCC
Q psy12169 3 GSLFGCTSIWSMVMIAFDRYTVIVKGITAK-PMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGN-LTACGTDYLTK 80 (263)
Q Consensus 3 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~ 80 (263)
..++..+|.+++++||+|||++|++|++++ ..+++++..+++++|+.+++.++|+.++........+ ...|..+...+
T Consensus 64 ~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 143 (257)
T PF00001_consen 64 FYFSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSS 143 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345678999999999999999999999944 5678999999999999999999999887554443333 56798766544
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 81 DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 120 (263)
. ...+........+++|+++++++|.+|.+.++++.++
T Consensus 144 ~--~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~ 181 (257)
T PF00001_consen 144 S--SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKR 181 (257)
T ss_dssp H--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred c--cccccccccccccccceeeeeeecccccccccccccc
Confidence 3 4567777888889999999999999999999887553
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.80 E-value=3.5e-19 Score=148.14 Aligned_cols=181 Identities=12% Similarity=0.142 Sum_probs=118.5
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcc-cccccchhhhhHHHHHHHHHHHHHhHHhhcccc-----cCC----Ccceec
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAK-PMTIGGALLRLMFVWVHALLWTLFPFFGWNRYV-----PEG----NLTACG 74 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~-~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~-----~~~----~~~~C~ 74 (263)
.+.++|+++|++||+|||+||+||.+++ ..+++.....++++|++++++++|+++.++... .+. ....|.
T Consensus 177 ~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~ 256 (417)
T PHA02638 177 IGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCT 256 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeee
Confidence 3567899999999999999999999844 446677778889999999999999987654321 011 134686
Q ss_pred ccccCCcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccc
Q psy12169 75 TDYLTKDW----HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNL 150 (263)
Q Consensus 75 ~~~~~~~~----~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (263)
..++.+.. ....+.+...+++|++|+++|++||.+|++.+++..++ ++.+ ..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~-------------------~k~k---~~rl 314 (417)
T PHA02638 257 LIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS-------------------KKTK---SIII 314 (417)
T ss_pred eeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------------ccch---hhhh
Confidence 55433221 11234445567788999999999999999998653211 0011 1122
Q ss_pred eeeeeeeeecccchhhHHHHHhHhhh------------------------hhhhhHHHHHHHHHHHHHhccHHHHHHHHH
Q psy12169 151 TACGTDYLTKDWHHRSYLIFYGFFVY------------------------FVPLILIIYAYYFIVRAVSVHEKQMREQAK 206 (263)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~------------------------~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~ 206 (263)
....+..+..+|.|+..+.....+.. ..-+.....|.||++|.+. .+++|++..+
T Consensus 315 i~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~-~~~FR~~l~~ 393 (417)
T PHA02638 315 VSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLI-GENFRMHLLM 393 (417)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-CHHHHHHHHH
Confidence 22223334489999877655433210 0012224567899999999 7888888765
Q ss_pred hC
Q psy12169 207 KM 208 (263)
Q Consensus 207 ~~ 208 (263)
..
T Consensus 394 ~~ 395 (417)
T PHA02638 394 IF 395 (417)
T ss_pred HH
Confidence 44
No 7
>KOG4220|consensus
Probab=99.77 E-value=5.3e-19 Score=139.47 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=97.3
Q ss_pred ccccccHHHHHHHHHHHHHHhHHhhcCCCcc-cccccchhhhhHHHHHHHHHHHHHhHHhhcccccC--CCcceeccccc
Q psy12169 2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAK-PMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE--GNLTACGTDYL 78 (263)
Q Consensus 2 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~C~~~~~ 78 (263)
++++.+-+|+++|..||+|||+.|++|+.|+ ++|.+++..+|+++|++|+++..|.++.|.-..+. .....|..++.
T Consensus 109 lDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFl 188 (503)
T KOG4220|consen 109 LDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFL 188 (503)
T ss_pred HHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEee
Confidence 4677889999999999999999999999965 68999999999999999999999988777654332 23346988886
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 79 TKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 123 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~ 123 (263)
.+.+ .+.-..+..|.+|..+|.+.|.+|+++.+++.+....
T Consensus 189 snp~----iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~ 229 (503)
T KOG4220|consen 189 SNPA----ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAK 229 (503)
T ss_pred cCce----eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6443 3445567789999999999999999999988776543
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.76 E-value=3.5e-18 Score=139.41 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=118.9
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCCc-ccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCcc
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDW 82 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~~-~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 82 (263)
..+..+|++++++||+|||++|++|+++ +..+.+++..+++++|+++++.++|+...+.. ..+.+...|...+..+..
T Consensus 119 ~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~-~~~~~~~~C~~~~~~~~~ 197 (335)
T PHA03087 119 YIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTT-KKDHETLICCMFYNNKTM 197 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeee-eccCCCceEEecCCCcch
Confidence 4566799999999999999999999994 45688999999999999999999987765443 333344568766653332
Q ss_pred chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceeeeeeeeecc
Q psy12169 83 HHRSY-LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKD 161 (263)
Q Consensus 83 ~~~~~-~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
....+ .+......+++|+++++++|.+|.+.++++.++.+ +++ ..+.....+..+..+
T Consensus 198 ~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~~~------------------~~k---~~k~l~~iv~~f~i~ 256 (335)
T PHA03087 198 NWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKSKK------------------NKK---AIKLVLIIVILFVIF 256 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh------------------cch---HHHhHHHHHHHHHHH
Confidence 22222 23345677899999999999999988876532100 000 111222223333479
Q ss_pred cchhhHHHHHhHhh---------------h--hhh--hhHHHHHHHHHHHHHhccHHHHHHHHHhCC
Q psy12169 162 WHHRSYLIFYGFFV---------------Y--FVP--LILIIYAYYFIVRAVSVHEKQMREQAKKMN 209 (263)
Q Consensus 162 ~~p~~~~~~~~~~~---------------~--~~P--~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~ 209 (263)
|.|+.......... . .+. +.....+.||++|... +++++++.++..+
T Consensus 257 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~-~~~fr~~~~~~~~ 322 (335)
T PHA03087 257 WLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFV-SEFFNKHKKKSLK 322 (335)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHc-CHHHHHHHHHHHH
Confidence 99976544322110 0 000 1123567899999999 6777776655443
No 9
>KOG2087|consensus
Probab=99.57 E-value=5.5e-15 Score=115.69 Aligned_cols=180 Identities=14% Similarity=0.194 Sum_probs=123.2
Q ss_pred CccccccHHHHHHHHHHHHHHhHHhhcCCC-cccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccC
Q psy12169 1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLT 79 (263)
Q Consensus 1 f~~~~~~~~S~~~l~~isidRy~aI~~P~~-~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 79 (263)
|+.++++..|++.|+.+++||+++|++|++ .++...|....+++..|+.+++.++.|+++-+.|.. ...|.+-...
T Consensus 109 flavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~---~~vClPL~~~ 185 (363)
T KOG2087|consen 109 FLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGA---SSVCLPLHIE 185 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcc---cceeeecccC
Confidence 456778899999999999999999999999 555566668999999999999999999998554432 3468654322
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceeeeeeeee
Q psy12169 80 KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLT 159 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (263)
+.....|.+...+..-.+-+++|.++|++|+..+++...... ... .....+....++.
T Consensus 186 -~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~------------------~~~---~~~akr~a~LvfT 243 (363)
T KOG2087|consen 186 -EPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT------------------LIS---TSVAKRMAFLVFT 243 (363)
T ss_pred -CccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc------------------cch---hhhhhCeeEEEEc
Confidence 223333556666666678899999999999998865322100 000 0112233344444
Q ss_pred --cccchhhHHHHHhHhhhhhhhhH-----------HHHHHHHHHHHHhccHHHHHHHHH
Q psy12169 160 --KDWHHRSYLIFYGFFVYFVPLIL-----------IIYAYYFIVRAVSVHEKQMREQAK 206 (263)
Q Consensus 160 --~~~~p~~~~~~~~~~~~~~P~~~-----------~~~~y~~i~~~~~~~~~~~~~~~~ 206 (263)
.||.|..+......++.-++... +..|.||+.|++. ++.++++...
T Consensus 244 d~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~f-T~~fk~d~~~ 302 (363)
T KOG2087|consen 244 DCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFF-TPVFKEDLFL 302 (363)
T ss_pred cccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHc-CHHHHHHHHH
Confidence 79999877766665543222111 3567899999999 6777666543
No 10
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.50 E-value=3.1e-07 Score=73.01 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhHHhhcCC-C-cccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCccchh
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGI-T-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHR 85 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~-~-~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 85 (263)
.+-....+++|++||.||++|. + .+..++.+...++++-|+.+++.++|.+. ......+.... .....|...-.
T Consensus 87 ~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~-~~~~~f~~~~~---~~~~~d~~~~~ 162 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFF-DTDFYFDNEEN---MSLFVDPEFIQ 162 (283)
T ss_pred HHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeec-cCceeeecccc---eeeecCHHHHH
Confidence 4556678899999999999999 4 44568889999999999999999998443 33332222211 11111221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 86 SYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 119 (263)
Q Consensus 86 ~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~ 119 (263)
...........+-.+..+++|+.++..+||+.|
T Consensus 163 -~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 163 -RNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 112222333445556689999999999997754
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.32 E-value=2.2e-05 Score=63.79 Aligned_cols=119 Identities=20% Similarity=0.353 Sum_probs=78.7
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcc---cccccchhhhhHHHHHHHHHHHHHhHHhhcccccC---CCcceeccc--
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAK---PMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE---GNLTACGTD-- 76 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~---~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~C~~~-- 76 (263)
.+..+|+|..++||+.|+++|.+|++.+ ..+++.+...+.++.++++++.++..+.....+.+ .....|...
T Consensus 87 ~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~ 166 (318)
T PF10324_consen 87 IFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPE 166 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccc
Confidence 4557899999999999999999999843 23688888888899999999988866544332211 112358511
Q ss_pred -ccCCc-------c-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 77 -YLTKD-------W-------HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 123 (263)
Q Consensus 77 -~~~~~-------~-------~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~ 123 (263)
...+. . ....|.....+..-++|.++..+....+.+.+|+.+++.++
T Consensus 167 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 167 NYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 10110 0 00112222233335789999999999999999987666443
No 12
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.28 E-value=4.5e-06 Score=65.51 Aligned_cols=106 Identities=14% Similarity=0.262 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcccc-cccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCccc
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAKPM-TIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWH 83 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~~~-t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 83 (263)
++..++...+.+|++||++||+.|++|+.. +.+....+.....+.+.... ..++-.. .++....|.+...-++
T Consensus 70 f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~---~~~~~~~-~~~~~~~C~pp~a~~~-- 143 (257)
T PF10320_consen 70 FFQCAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFT---VIGFLYR-DDETIVICNPPLAFHG-- 143 (257)
T ss_pred HHHHHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHH---hheeEec-CCcccccCCCccccCc--
Confidence 455677888999999999999999997755 44433333333333333322 2222222 2223457876433322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 84 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 119 (263)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~ 119 (263)
..+....... + +..++++..|......++++.+
T Consensus 144 -~~~~~~~~~~-~-~inv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 144 -TASQIWSYSN-I-IINVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred -cHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHcc
Confidence 2222222221 1 2223345666666666655433
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.16 E-value=2.1e-05 Score=62.42 Aligned_cols=110 Identities=15% Similarity=0.294 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCcc-cccccchhhhhHHHHHHHHHHHHHhHHhhccc-ccCCCcceecccccCCccchh
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITAK-PMTIGGALLRLMFVWVHALLWTLFPFFGWNRY-VPEGNLTACGTDYLTKDWHHR 85 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~~-~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~ 85 (263)
..+.++-.+||++|+.||..|.+++ ..+.+.+..++++.|++++....++.+.-+-+ .++++.. - ..+ +++....
T Consensus 79 ~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~-~-~~~-~~~~~C~ 155 (274)
T PF10328_consen 79 FIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETW-S-WSY-PTDPPCG 155 (274)
T ss_pred HHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceecccee-e-eec-CCCCccc
Confidence 4688888999999999999999944 56999999999999999997776644422211 1121111 0 010 1111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 86 SYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120 (263)
Q Consensus 86 ~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 120 (263)
.+...........-.+++..++..++.++++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~ 190 (274)
T PF10328_consen 156 NYSWYFDFYKNFILVIISNILNIITFIKLRKFRKK 190 (274)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22222223333344455777888888888876555
No 14
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.14 E-value=6.3e-06 Score=67.32 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=41.1
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHHHHHH
Q psy12169 173 FFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILVNFYI 248 (263)
Q Consensus 173 ~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~~l~~ 248 (263)
++++++|+.++..||..+.+.+.+. +.++++|++||++++ ++||+||+++.++.
T Consensus 203 ~~~f~iPl~im~~cY~~I~~~L~~~----------------------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~ 260 (338)
T PHA03234 203 FIWGIFPTMIFSFFYVIFCKALHAL----------------------TEKKHKKTLFFIRILILSFLCIQIPNIAILICE 260 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------------------hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3457899999999999988887521 012356777877666 99999999988764
Q ss_pred h
Q psy12169 249 S 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 261 ~ 261 (338)
T PHA03234 261 I 261 (338)
T ss_pred H
Confidence 3
No 15
>KOG4219|consensus
Probab=97.97 E-value=3.9e-06 Score=67.60 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=52.8
Q ss_pred HHHhHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHH
Q psy12169 169 IFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILV 244 (263)
Q Consensus 169 ~~~~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~ 244 (263)
..+.++.+++|+.++..+|..+...+...+ ...++++ +.....+..+|+.||+++| .+||+|||+.
T Consensus 211 ~vl~~lqYflPliVl~~~Yt~iav~LW~~~-~~gd~~d---------~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y 280 (423)
T KOG4219|consen 211 YVLLFLQYFLPLIVLGLAYTVIAVTLWGRR-IPGDQQD---------RKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIY 280 (423)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHhcc-Cccchhc---------hhhHHHHHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 345567799999999999988888877322 2111111 1234456788899999888 9999999999
Q ss_pred HHHHhCCC
Q psy12169 245 NFYISGAS 252 (263)
Q Consensus 245 ~l~~~~~~ 252 (263)
.++....|
T Consensus 281 ~il~~~~~ 288 (423)
T KOG4219|consen 281 FILNATNP 288 (423)
T ss_pred HHHHHhHH
Confidence 98875443
No 16
>PHA03235 DNA packaging protein UL33; Provisional
Probab=97.94 E-value=2e-05 Score=66.02 Aligned_cols=61 Identities=8% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHhHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHH
Q psy12169 168 LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYIL 243 (263)
Q Consensus 168 ~~~~~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i 243 (263)
.....++.+++|+.++..||..+...++++.+ ++++|.++|++++ ++||+||++
T Consensus 205 ~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~----------------------~~~~k~~~~v~iivv~F~iCWlPy~v 262 (409)
T PHA03235 205 KVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY----------------------KKRSRTLTFVCILLLSFLCLQTPFVA 262 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------hcchhhhhhHHHHHHHHHHHHhHHHH
Confidence 34445567899999999999999888763210 1123455554444 999999999
Q ss_pred HHHHHhC
Q psy12169 244 VNFYISG 250 (263)
Q Consensus 244 ~~l~~~~ 250 (263)
+.++...
T Consensus 263 ~~l~~~~ 269 (409)
T PHA03235 263 IMIFDSY 269 (409)
T ss_pred HHHHHHH
Confidence 9887543
No 17
>PHA02834 chemokine receptor-like protein; Provisional
Probab=97.85 E-value=2.1e-05 Score=64.08 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=41.6
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHHHHH
Q psy12169 172 GFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILVNFY 247 (263)
Q Consensus 172 ~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~~l~ 247 (263)
..+.+++|+.++..||..+...++++. +++++|.+||++++ ++||+||++..++
T Consensus 194 ~i~~f~iPl~ii~~~Y~~I~~~l~~~~----------------------~~~~~k~~k~~~~vv~~F~icWlPy~i~~~l 251 (323)
T PHA02834 194 NIFGIVIPLIILIYCYSKILYTLKNCK----------------------NKNKTRSIKIILTVVTFTVVFWVPFNIVLFI 251 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------CcccceEEeehhHHHHHHHHHHhhHHHHHHH
Confidence 356789999999999999988775321 01234566666655 9999999999887
Q ss_pred HhC
Q psy12169 248 ISG 250 (263)
Q Consensus 248 ~~~ 250 (263)
...
T Consensus 252 ~~~ 254 (323)
T PHA02834 252 NSL 254 (323)
T ss_pred HHH
Confidence 543
No 18
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=97.69 E-value=7.4e-05 Score=62.88 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=40.7
Q ss_pred HhHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHHHH
Q psy12169 171 YGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILVNF 246 (263)
Q Consensus 171 ~~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~~l 246 (263)
...+++++|+.++.+||..+...+.+.+ + ++++|.+|+++++ ++||+||++..+
T Consensus 277 ~~i~~f~lPl~vmi~cY~~I~~~L~~~~------------------~----~~k~k~~rli~~ivi~f~lcW~Py~i~~l 334 (417)
T PHA02638 277 INILGMFIPIIIFAFCYIKIILKLKQLK------------------K----SKKTKSIIIVSIIIICSLICWIPLNIVIL 334 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------c----cccchhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 3456788999999999999988875210 0 1123444555444 999999999988
Q ss_pred HHhC
Q psy12169 247 YISG 250 (263)
Q Consensus 247 ~~~~ 250 (263)
+...
T Consensus 335 l~~~ 338 (417)
T PHA02638 335 FATM 338 (417)
T ss_pred HHHH
Confidence 7654
No 19
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=97.26 E-value=0.00084 Score=54.97 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=39.5
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHHHHH
Q psy12169 172 GFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILVNFY 247 (263)
Q Consensus 172 ~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~~l~ 247 (263)
..+.+++|..++..+|..+...++++. ++++++|.+|++.++ ++||+||++..++
T Consensus 208 ~~~~~~lP~~ii~~~y~~i~~~l~~~~---------------------~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~ 266 (335)
T PHA03087 208 NIIGMLIPLTILLYCYSKILITLKGIN---------------------KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------cchhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999988876665211 112345566666665 9999999998766
Q ss_pred Hh
Q psy12169 248 IS 249 (263)
Q Consensus 248 ~~ 249 (263)
..
T Consensus 267 ~~ 268 (335)
T PHA03087 267 YS 268 (335)
T ss_pred HH
Confidence 43
No 20
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.09 E-value=0.006 Score=45.92 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=64.5
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCC----ccc----c--cccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCccee
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGIT----AKP----M--TIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTAC 73 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~----~~~----~--t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C 73 (263)
.+.-.++-+...+||++=|+.|.+|-. .+. . .+.....+..+.|++ .+.....+.+...+.+...+|
T Consensus 82 q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~---~~~la~i~~~~~~Y~~~g~WC 158 (201)
T PF11710_consen 82 QVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLL---LASLAFIGLGGPGYGPAGAWC 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHH---HHHHHHhccccCcccccCcEE
Confidence 345567889999999999999999922 111 1 111222222233333 333333333334445556789
Q ss_pred cccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 74 GTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120 (263)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 120 (263)
-..... ..+.+...-..-++-...++..|..|+..+|++.|+
T Consensus 159 Wi~~~~-----~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 159 WIPSRY-----EWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred EECCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 663221 224445555555667778899999999999987654
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.08 E-value=0.0017 Score=51.58 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCCccc
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWH 83 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 83 (263)
..+..+....-..||++|+-+|..|.++.+.=+|....+++++.++++....+....-.....++++..-... +. .
T Consensus 89 ~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~ 164 (275)
T PF02118_consen 89 YYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYN---DT-V 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHccccEEEEECCceEEEEE---ec-c
Confidence 3455667778889999999999999985544334455566666666665544433322222222222211111 10 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 84 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE 118 (263)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~ 118 (263)
............+.+-.++.+.++....+++++.+
T Consensus 165 ~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 165 SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11111122233334444556677777777776654
No 22
>KOG4220|consensus
Probab=96.55 E-value=0.00059 Score=55.55 Aligned_cols=34 Identities=21% Similarity=0.079 Sum_probs=30.4
Q ss_pred chHHHHHhhhhhhh----HHHhHHHHHHHHHHhCCCcc
Q psy12169 221 TSAEIKLAKVRSPP----TMTTMTYILVNFYISGASHS 254 (263)
Q Consensus 221 ~~~e~r~~k~~~~v----~icW~P~~i~~l~~~~~~~~ 254 (263)
..+|+|++|++..| ++||+||.|+.++..+++.-
T Consensus 409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~C 446 (503)
T KOG4220|consen 409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNC 446 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccc
Confidence 37899999999999 99999999999999887763
No 23
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=95.42 E-value=0.19 Score=39.78 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCccccccc
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITAKPMTIG 37 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~~~~t~~ 37 (263)
.+.......||+||-+|+..|..++...++
T Consensus 93 ~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k 122 (273)
T PF10316_consen 93 SIRSILALIIALDRVFAVYFPIFYHNYRKK 122 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCcc
Confidence 456667789999999999999985433333
No 24
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=95.21 E-value=0.1 Score=42.15 Aligned_cols=119 Identities=10% Similarity=0.099 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCc--ccccc---cchhhhhHHHHHHHHHHHHHhHHhhcccccCC---Ccceeccc
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITA--KPMTI---GGALLRLMFVWVHALLWTLFPFFGWNRYVPEG---NLTACGTD 76 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~--~~~t~---~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~C~~~ 76 (263)
++...|.+.-+.+++-=++.|+..-+. -+.+. +....++++.++.++...++....++...... ....++.+
T Consensus 91 f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~t~~ 170 (303)
T PF05296_consen 91 FSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNSTSN 170 (303)
T ss_pred HHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcceEE
Confidence 345678888899999888888876541 12222 22334556667777743333223333221111 11111111
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 77 YLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 124 (263)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~ 124 (263)
. .++..+..+.......+.++|+++++.+-..+...++||.|+++..
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n 217 (303)
T PF05296_consen 171 F-QESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKN 217 (303)
T ss_pred e-ecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 1112233344444457889999999999999999999999886643
No 25
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.05 E-value=0.18 Score=40.84 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCC-cccccccchhhhhHHHHHHHH--HHHHHhHHhhcccccCCCcceecccccC-Cccc
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHAL--LWTLFPFFGWNRYVPEGNLTACGTDYLT-KDWH 83 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~-~~~~t~~~~~~~i~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~ 83 (263)
.+|...-..++++|..-+..|.. ...+..+++...+++.-+.++ .+..+|... + .+...-..|... ++..
T Consensus 118 ~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~F-n-----s~~~sw~fDP~i~~g~~ 191 (313)
T PF10321_consen 118 CGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLF-N-----SEYMSWFFDPMIFEGKS 191 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccC-C-----CCcceEecCccccCCCC
Confidence 46677778999999999999987 334466666555555443333 333344431 1 111111111111 0111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 84 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120 (263)
Q Consensus 84 ~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 120 (263)
...|....-...=++-..++..+|..++..++++.+.
T Consensus 192 ~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~ 228 (313)
T PF10321_consen 192 PELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKY 228 (313)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1123322222222333456788888888888776444
No 26
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=95.05 E-value=0.3 Score=39.87 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHH
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALL 52 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~ 52 (263)
++...+..+..++++||++|-++.-+|.+.++.....+..+.|++++.
T Consensus 105 ~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 105 FGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLL 152 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 456778889999999999999998777654443333444444555544
No 27
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.68 E-value=0.017 Score=40.94 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHHhHHhhcCCCc-ccccccchhhhhHHHHHHHHHHHHHhHHh
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFG 60 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~~P~~~-~~~t~~~~~~~i~~~W~~~~~~~~~~~~~ 60 (263)
+-....+.-++|+++|-..|.+|++. ..+|.++...-+++..++.+...+.|.+.
T Consensus 54 ~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 54 SYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred HHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 33455666679999999999999985 46899999999988888888877777763
No 28
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=92.65 E-value=1.1 Score=35.22 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=64.3
Q ss_pred ccHHHHHHHHHHHHHHhHHhhcCCC-cccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCC----Ccceeccccc-C
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEG----NLTACGTDYL-T 79 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~~P~~-~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~C~~~~~-~ 79 (263)
+.++-.+.=..||+.|....-.--. .+.+.+....+.+..+|++++.........--+|.++. ..-.|..... .
T Consensus 100 ~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v 179 (305)
T PF04789_consen 100 CHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVV 179 (305)
T ss_pred HHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeE
Confidence 4455566778899999776543222 33445677888888899999887765333222232221 1225754310 1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 80 KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVS 115 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~ 115 (263)
+...-....+.-....+.+|.++ ...|+.+..++.
T Consensus 180 ~~~~P~~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~ 214 (305)
T PF04789_consen 180 DISPPRGIQIIEIILQFGIPIFI-LVIYIAIIIKII 214 (305)
T ss_pred eeCCCCchhHHHHHHHHhHHHHH-HHHHHHHHHHHH
Confidence 11122335567778889999665 566777776654
No 29
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=91.41 E-value=0.91 Score=36.67 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhc--ccccCC--CcceecccccC
Q psy12169 4 SLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWN--RYVPEG--NLTACGTDYLT 79 (263)
Q Consensus 4 ~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~--~~~~~~--~~~~C~~~~~~ 79 (263)
..+.+.|.+.-++.++=|-.-+..|-+++....+-....+-++.+.+++.++|-..+.+ .....+ .+. -... ..
T Consensus 111 ~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fGA-I~I~-~~ 188 (307)
T PF10322_consen 111 YYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFGA-IIIT-ST 188 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCCE-EEEE-EE
Confidence 34567888889999999999999997755555555556666667777777766443222 111111 000 0000 01
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 80 KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE 118 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~ 118 (263)
.++.+...... ......+-.+.++..++.++.++|+.+
T Consensus 189 ~~~~~~~~~~~-~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 189 GSWFNIRNSIF-HLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred cccccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222222 222233444557888888999888764
No 30
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.04 E-value=5.2 Score=30.72 Aligned_cols=28 Identities=4% Similarity=0.088 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcc
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAK 32 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~ 32 (263)
+.++.+++.-..+++|||+|....-+|.
T Consensus 94 flmT~~ml~PigftIERfiAl~~A~~YE 121 (236)
T PF02175_consen 94 FLMTIPMLFPIGFTIERFIALKMAEKYE 121 (236)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 4567888889999999999999955454
No 31
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=87.04 E-value=16 Score=30.34 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHH
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTL 55 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~ 55 (263)
.++-+=..+-|+|=|+.+.+.- ...+...-=.++|.++.++..
T Consensus 128 sAtfwWtfcYAVDv~Lv~~~~a-----g~~~~~lYH~~aWgl~~lL~~ 170 (405)
T PF02101_consen 128 SATFWWTFCYAVDVYLVIRRSA-----GRSTIWLYHMMAWGLPALLCA 170 (405)
T ss_pred HHHHHHHHHHHHHHhheeeccC-----CCcchhHHHHHHHHHHHHHHH
Confidence 3455556677888887765431 122234555678888877664
No 32
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=85.86 E-value=10 Score=30.66 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=46.1
Q ss_pred cccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceeccc
Q psy12169 3 GSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTD 76 (263)
Q Consensus 3 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 76 (263)
..++..+|.+=.++||++=|+.+++.... ..|.-....+++|.++++.++.++. -+.++ ..+.+|-..
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~~---~~k~e~~Y~l~~wGiPli~a~i~l~-~~~~g--~~G~WCWI~ 149 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYDE---LEKLEKYYHLVCWGIPLIPAVIPLI-GNDYG--PAGNWCWIK 149 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCcc---HHHHHHHHHHHHHHHHHHHHHHHHH-ccCCC--CCCCceeec
Confidence 34567788877788999999999876432 2344456788899999998877654 23332 333478653
No 33
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=85.02 E-value=4.2 Score=32.92 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=50.2
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhhHHHhHHHHHHHHH
Q psy12169 172 GFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVNFY 247 (263)
Q Consensus 172 ~~~~~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v~icW~P~~i~~l~ 247 (263)
...++.+|+.++..+...++..+.+|-++++.... ..+.-+.+.+.|++|+++..++-.+.|++..++
T Consensus 185 ~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~--------g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~ 252 (303)
T PF05296_consen 185 FNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNAT--------GFRDPSTEAHIRAIKTMISFLILYIIYFLSLIL 252 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCC--------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999988877664321 113345678999999999886666777665554
No 34
>PF13853 7tm_4: Olfactory receptor
Probab=84.83 E-value=0.041 Score=39.09 Aligned_cols=78 Identities=22% Similarity=0.208 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhccccc--CCCcceeccc----ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 40 LLRLMFVWVHALLWTLFPFFGWNRYVP--EGNLTACGTD----YLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRA 113 (263)
Q Consensus 40 ~~~i~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~ 113 (263)
..+.+..|+.+++..++....-..... ..+..-|... -..|...+..+...........|+.++++.|.+|++.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 455667888888887776543222211 1112223210 1233344445555556666779999999999999998
Q ss_pred HHHH
Q psy12169 114 VSVH 117 (263)
Q Consensus 114 l~~~ 117 (263)
+.|.
T Consensus 84 vlki 87 (144)
T PF13853_consen 84 VLKI 87 (144)
T ss_pred hhcc
Confidence 8764
No 35
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=81.64 E-value=26 Score=28.17 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHH
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF 59 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~ 59 (263)
+...|.+.+.+--.-||..+.++- .+.++...++++.+..++...+...+
T Consensus 92 ~~~~s~~~i~~sf~yRy~iL~~~~----~~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 92 FSIHSGWSIILSFYYRYYILRNPS----PSRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888888899999999873 25677777777888887777665443
No 36
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=77.31 E-value=1 Score=36.42 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 91 YGFFVYFVPLILIIYAYYFIVRAVSV 116 (263)
Q Consensus 91 ~~~~~~~~p~~ii~~~y~~I~~~l~~ 116 (263)
.......+...++++|-.++++++++
T Consensus 200 ~~~~im~~s~~iii~cg~~~~~~i~~ 225 (307)
T PF10326_consen 200 IMCIIMSISFFIIIYCGIKIYKKIKK 225 (307)
T ss_pred ecchhHHhHHHHHHHHHhhhHHHHhc
Confidence 33444567888899999999998854
No 37
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=74.66 E-value=45 Score=27.42 Aligned_cols=71 Identities=8% Similarity=0.091 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccc
Q psy12169 5 LFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDY 77 (263)
Q Consensus 5 ~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 77 (263)
+++.+|..=-+.+++.=|++...--.+... .+.....=+++|.++++..+. .+..+..+.|+-...|....
T Consensus 103 yf~mAa~~WWviLt~~W~lsa~~kw~~e~i-~~~s~yfH~~aW~iP~~~ti~-vL~~~~VdgD~ltGiC~Vg~ 173 (328)
T PF01534_consen 103 YFGMAASLWWVILTLTWFLSAGLKWGSEAI-EKKSSYFHLVAWGIPAVLTIA-VLALRKVDGDELTGICFVGN 173 (328)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccCcchh-hhhcchhhhHHhhhhHHHHHH-HHHhcccccccccceeEEeC
Confidence 445555555566677778776654332223 355667789999999998877 44466667777777897743
No 38
>KOG4193|consensus
Probab=73.61 E-value=19 Score=32.33 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHh-hcccccCCCcceecccccCCccch
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFG-WNRYVPEGNLTACGTDYLTKDWHH 84 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~ 84 (263)
+..+..+=|.+++++=|+.++.=+.. ..+++.....++.|..++++....... ...+........|-.+.....
T Consensus 396 f~LaaF~Wm~leg~hl~~~~v~vf~~--~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~--- 470 (610)
T KOG4193|consen 396 FFLAAFFWMLLEGFHLYLLLVEVFRS--RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGF--- 470 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCce---
Confidence 44555666777888888866655432 235555556569999998877653432 222111222233765432211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 85 RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH 117 (263)
Q Consensus 85 ~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~ 117 (263)
.| .|+-|..+|+.+++.++...-++
T Consensus 471 -~~-------~F~GPv~~ii~~Ni~~Fv~t~~~ 495 (610)
T KOG4193|consen 471 -IW-------SFLGPVTLIILVNIVMFVVTLKK 495 (610)
T ss_pred -EE-------EEehHHHHHHHHHHHHHHHHHHH
Confidence 11 16778888888887766655443
No 39
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=72.78 E-value=19 Score=21.93 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 87 YLIFYGFFVYFVPLILI-IYAYYFIVRAVSVHEKQMREQAK 126 (263)
Q Consensus 87 ~~~~~~~~~~~~p~~ii-~~~y~~I~~~l~~~~~~~~~~~~ 126 (263)
|..+..++..+.|+.++ .++-.++.+.+.+++++.+.+++
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~K~k~K 60 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEEREKKKKAK 60 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666787775 56667777888776666444443
No 40
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=68.76 E-value=1.6 Score=33.83 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHH
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF 59 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~ 59 (263)
+..++..=+.+.++|=|..++++... .+++.....++.|.+++++......
T Consensus 82 ~~la~f~Wm~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gwg~P~~iv~i~~~ 132 (242)
T PF00002_consen 82 FFLASFFWMLVEAFYLYRLLVKVFNS---SRRRFWWYYLIGWGIPALIVVISVA 132 (242)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeEEEeecc---cchhhheeeeeeecCcceeeeeeee
Confidence 44556666778899999999887432 2445566777889999887766443
No 41
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.45 E-value=11 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 83 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE 118 (263)
Q Consensus 83 ~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~ 118 (263)
....|.++.+.+..++|+.++.-+|-.|.+..+..+
T Consensus 157 y~W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 192 (194)
T PF05241_consen 157 YFWFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQ 192 (194)
T ss_pred hheeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788899999999999999999988876543
No 42
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=67.71 E-value=11 Score=23.35 Aligned_cols=29 Identities=0% Similarity=-0.182 Sum_probs=19.3
Q ss_pred chHHHHHhhhhhhh----HHHhH-HHHHHHHHHh
Q psy12169 221 TSAEIKLAKVRSPP----TMTTM-TYILVNFYIS 249 (263)
Q Consensus 221 ~~~e~r~~k~~~~v----~icW~-P~~i~~l~~~ 249 (263)
+++-+|.+|.+++= +++|+ |+.+-.+-..
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~ 37 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYM 37 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665 99999 9876555443
No 43
>KOG2087|consensus
Probab=66.07 E-value=3 Score=34.15 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=33.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHh-hhhhhh---HHHhHHHHHHHHHHhC
Q psy12169 176 YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLA-KVRSPP---TMTTMTYILVNFYISG 250 (263)
Q Consensus 176 ~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~-k~~~~v---~icW~P~~i~~l~~~~ 250 (263)
-.+.+.++..+|..+.+.+.+... +......+++ ||.+++ ++||.|.+...+....
T Consensus 201 N~lafiiia~~Y~~iy~~l~~~~~-------------------~~~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~ 260 (363)
T KOG2087|consen 201 NLLAFIIIAFSYGKIYCSLRKGDL-------------------SATLISTSVAKRMAFLVFTDCICWCPIAFFKFSALI 260 (363)
T ss_pred HHHHHHHHHHHhhhhheeeecCCC-------------------ccccchhhhhhCeeEEEEccccccCchheeeeHHhc
Confidence 455667788899888877762111 1111112333 344444 9999999998876544
No 44
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=64.91 E-value=24 Score=29.00 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCc
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITA 31 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~ 31 (263)
...++.-.++++||-+|-..|-.+
T Consensus 113 ~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 113 SGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhh
Confidence 455677889999999999888544
No 45
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=62.12 E-value=82 Score=25.32 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHH-hhcCCCcc---cccccchhhhhHHHHHHHHHHHHHhHH
Q psy12169 11 IWSMVMIAFDRYTV-IVKGITAK---PMTIGGALLRLMFVWVHALLWTLFPFF 59 (263)
Q Consensus 11 ~~~l~~isidRy~a-I~~P~~~~---~~t~~~~~~~i~~~W~~~~~~~~~~~~ 59 (263)
....+...+-|.++ |..+-+.. .-++|+...-+++++.++++.......
T Consensus 72 g~~~a~lcI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yi 124 (283)
T PF02076_consen 72 GIPAASLCIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYI 124 (283)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777766 33332221 123677777788888888876665444
No 46
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=61.20 E-value=19 Score=27.22 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.0
Q ss_pred HHHHHHHhHHhhcCCC
Q psy12169 15 VMIAFDRYTVIVKGIT 30 (263)
Q Consensus 15 ~~isidRy~aI~~P~~ 30 (263)
+++|+|||+-|+.-.+
T Consensus 136 ~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 136 VAVAIYRYLIVVLKKR 151 (226)
T ss_pred hhhhhhhhheeeeccc
Confidence 4799999999987543
No 47
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=60.77 E-value=26 Score=28.34 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=39.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh----HHHhHHHHHHHHHHhC
Q psy12169 176 YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP----TMTTMTYILVNFYISG 250 (263)
Q Consensus 176 ~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v----~icW~P~~i~~l~~~~ 250 (263)
-.+|..+.......++..+++.++.++... +++.+++.|.++++..+ +++=+|..++.++...
T Consensus 201 kiiP~il~~ilti~Li~~Lrk~~~~r~~~~------------~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~ 267 (318)
T PF10324_consen 201 KIIPCILLPILTILLIIELRKAKKRRKKLS------------SSKSKKSDRTTKLILFMTISFLISELPQGIIFLLESF 267 (318)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHhhhccc------------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456766665555666677664444433321 11134556666777666 9999999999998664
No 48
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=57.89 E-value=1e+02 Score=25.02 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHH-hhccccc----CCCcceecccccC-C-----
Q psy12169 12 WSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF-GWNRYVP----EGNLTACGTDYLT-K----- 80 (263)
Q Consensus 12 ~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~~~----~~~~~~C~~~~~~-~----- 80 (263)
-.|+.-=+-|+-+|.+..+.....+...........+.+++..+.-.. +.++.+. +.+...|...+.. +
T Consensus 106 ~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l~nf~iY 185 (303)
T PF10327_consen 106 ESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYPEYLSWFSSLPNFAIY 185 (303)
T ss_pred HHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCchhHHHhcCCCEEEE
Confidence 344455678999999987743455554445555555555554433111 2221110 1122234322211 0
Q ss_pred c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 81 D-WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQM 121 (263)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~ 121 (263)
+ .............+..+-..+..+++..+++.+++.++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i 227 (303)
T PF10327_consen 186 DFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI 227 (303)
T ss_pred eChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111122233344455666778888999999988766554
No 49
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=54.60 E-value=37 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 98 VPLILIIYAYYFIVRAVSVHEKQMREQAK 126 (263)
Q Consensus 98 ~p~~ii~~~y~~I~~~l~~~~~~~~~~~~ 126 (263)
.+++++++.|..+.|.=+++.++.++...
T Consensus 14 ~~vl~~~ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 14 PLVLIFAIFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 33444788899888887777666555444
No 50
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.61 E-value=45 Score=19.64 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12169 91 YGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 127 (263)
Q Consensus 91 ~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~ 127 (263)
....-.+..+.+.++.++.|+...+.+.|....++..
T Consensus 7 ~~~a~a~~t~~~~l~fiavi~~ayr~~~K~~~d~aa~ 43 (60)
T COG4736 7 RGFADAWGTIAFTLFFIAVIYFAYRPGKKGEFDEAAR 43 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHhc
Confidence 3333344444556677777777777777766666554
No 51
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=52.42 E-value=1e+02 Score=24.62 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhCCCCcCCCCCccCchHHHHHhhhhhhh---HHHhHHHHHHHHHHhCCCcc
Q psy12169 183 IIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPP---TMTTMTYILVNFYISGASHS 254 (263)
Q Consensus 183 ~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~v---~icW~P~~i~~l~~~~~~~~ 254 (263)
...+|.-+...++++.+ +...+.+++.++|.|.+.+.++. .++-+=|++.....+.....
T Consensus 179 ~iv~Y~~i~~~iRk~~k------------~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~ 241 (283)
T PF10323_consen 179 CIVCYGIIFIFIRKRNK------------KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYFAQNFNT 241 (283)
T ss_pred HHHHHHHHHHHHHHhhh------------hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35577777777663322 11112456678899999998877 44445555555555444433
No 52
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=51.57 E-value=1.1e+02 Score=25.47 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCccccc
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITAKPMT 35 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~~~~t 35 (263)
+.-++.+.++++||..|-..--.|.+-+
T Consensus 135 ~~~~~~~~~~~iER~~AT~~i~dYEk~~ 162 (365)
T PF03125_consen 135 FSAIFCLLAIVIERCFATYFIKDYEKKS 162 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4456889999999999988876665433
No 53
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=46.21 E-value=1.6e+02 Score=23.76 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=25.1
Q ss_pred ccccchhhhhHHHHHHHH-HHHHHhHHhhcccccCCCcceecc
Q psy12169 34 MTIGGALLRLMFVWVHAL-LWTLFPFFGWNRYVPEGNLTACGT 75 (263)
Q Consensus 34 ~t~~~~~~~i~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~C~~ 75 (263)
...+.......+.|+... +..+.....|.....+.-...|..
T Consensus 19 ~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~n~~~~~~~wCDI 61 (283)
T PF02076_consen 19 WRARNIGTCSLIFWLFLSNLIYFINAIIWRDNDINWWPVWCDI 61 (283)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCceeeee
Confidence 346777888889997654 344445555765443333346754
No 54
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=45.96 E-value=1.5e+02 Score=23.37 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHhhcCCCccc--ccccchhhhhHHHHHHHHHH
Q psy12169 10 SIWSMVMIAFDRYTVIVKGITAKP--MTIGGALLRLMFVWVHALLW 53 (263)
Q Consensus 10 S~~~l~~isidRy~aI~~P~~~~~--~t~~~~~~~i~~~W~~~~~~ 53 (263)
--+.+.++|++|++---.|-..+. .+.+.....+-...+..++-
T Consensus 96 ~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k 141 (267)
T PF10325_consen 96 FHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILK 141 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 345677999999999999975332 35555555444444444443
No 55
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=43.28 E-value=1.7e+02 Score=23.42 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHH
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFF 59 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~ 59 (263)
.....++..+=-+||.++...-+ +...++.-........+.+.+..+|..+
T Consensus 97 ~~~~~S~~~lFe~R~~~i~~~~~-~~~~~~~r~~~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 97 AFVGVSILSLFENRYQIIIRNRS-RSLWKKIRIIFIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred hhhhHHHHHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666677899999997644 2222333334444455666666666554
No 56
>COG3924 Predicted membrane protein [Function unknown]
Probab=40.88 E-value=84 Score=19.16 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 92 GFFVYFVPLILIIYAYYFIVRAV 114 (263)
Q Consensus 92 ~~~~~~~p~~ii~~~y~~I~~~l 114 (263)
-..++.+|++.++.||..|-..-
T Consensus 47 E~aCi~lPllFi~l~~~mvkfif 69 (80)
T COG3924 47 EMACILLPLLFIVLCWAMVKFIF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999998765443
No 57
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=40.75 E-value=33 Score=27.19 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=59.5
Q ss_pred ccHHHHHHHHHHHHHHhHHhh-cCCCccc-----ccccchhhhhHHHHHHHHHHHHHhHH---hhcccccC---CCccee
Q psy12169 6 FGCTSIWSMVMIAFDRYTVIV-KGITAKP-----MTIGGALLRLMFVWVHALLWTLFPFF---GWNRYVPE---GNLTAC 73 (263)
Q Consensus 6 ~~~~S~~~l~~isidRy~aI~-~P~~~~~-----~t~~~~~~~i~~~W~~~~~~~~~~~~---~~~~~~~~---~~~~~C 73 (263)
+=..|+.+-.++|+ |-||+ .|-..++ ..++.....+...|++-.++.....+ +-...... .....|
T Consensus 58 ~RglSictTCLLSv--fQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yC 135 (265)
T PF03402_consen 58 ARGLSICTTCLLSV--FQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYC 135 (265)
T ss_pred hchhhHHhhhHHHH--HhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeE
Confidence 34567778888877 44555 3333332 24666677777789988876654222 11111111 112357
Q ss_pred cccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 74 GTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122 (263)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~ 122 (263)
.....+. .....|..+. ..--++.+.+|+.+-+-+...++||+++.+
T Consensus 136 s~~~~~~-~~~~~~~~~~-~~~D~~fvgLM~~aSgyMV~~L~RH~q~Vq 182 (265)
T PF03402_consen 136 SSVPISY-IVSSLFATLL-SFRDVLFVGLMIWASGYMVFLLYRHHQQVQ 182 (265)
T ss_pred EEEecch-hhhhhhhhHH-HhhHHHHHHHHHhhhhhheeeeeecccccc
Confidence 5432211 1111222222 222345566788888888888888877643
No 58
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=36.29 E-value=92 Score=19.73 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=16.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 98 VPLIL-IIYAYYFIVRAVSVHEKQMREQAK 126 (263)
Q Consensus 98 ~p~~i-i~~~y~~I~~~l~~~~~~~~~~~~ 126 (263)
+|+++ +++.|..+.+.-+|+.++.++...
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~~m~~ 36 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHKKLIE 36 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHHHHHH
Confidence 34333 567787777776666555444433
No 59
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.63 E-value=96 Score=18.30 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 88 LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 123 (263)
Q Consensus 88 ~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~ 123 (263)
.+..+.+++++-.++....+.+.-+.+++..++..+
T Consensus 24 il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~ 59 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKK 59 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555565555555554444433
No 60
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=30.87 E-value=1.1e+02 Score=20.76 Aligned_cols=20 Identities=10% Similarity=0.379 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12169 98 VPLILIIYAYYFIVRAVSVH 117 (263)
Q Consensus 98 ~p~~ii~~~y~~I~~~l~~~ 117 (263)
+|+++++..|..+++.=+|+
T Consensus 7 l~~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHHHheechHHHH
Confidence 34444433333344433333
No 61
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=30.14 E-value=37 Score=19.80 Aligned_cols=33 Identities=3% Similarity=0.001 Sum_probs=15.6
Q ss_pred hHHHHHhhhhhhh-HHHhHHHHHHHHHHhCCCcc
Q psy12169 222 SAEIKLAKVRSPP-TMTTMTYILVNFYISGASHS 254 (263)
Q Consensus 222 ~~e~r~~k~~~~v-~icW~P~~i~~l~~~~~~~~ 254 (263)
++..+++|.+++| ++-..--.++..+-++..|.
T Consensus 4 k~~~~mtriVLLISfiIlfgRl~Y~~I~a~~hHq 37 (59)
T PF11119_consen 4 KKNSRMTRIVLLISFIILFGRLIYSAIGAWVHHQ 37 (59)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456677777766 33333323333334443443
No 62
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=29.03 E-value=3.2e+02 Score=22.36 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=16.4
Q ss_pred HHHHhHHhhcCCC-cccccccchhhh
Q psy12169 18 AFDRYTVIVKGIT-AKPMTIGGALLR 42 (263)
Q Consensus 18 sidRy~aI~~P~~-~~~~t~~~~~~~ 42 (263)
=+.||+++++|-. .+...+......
T Consensus 110 FvYRYl~l~~~~~~~~~F~p~gl~~s 135 (310)
T PF10319_consen 110 FVYRYLVLFNSKFINKYFMPYGLIGS 135 (310)
T ss_pred HHHHHHHHhCcHHHHHhhhhHHHHHH
Confidence 4799999999965 444445544333
No 63
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.54 E-value=21 Score=22.48 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHHhCCCc
Q psy12169 235 TMTTMTYILVNFYISGASH 253 (263)
Q Consensus 235 ~icW~P~~i~~l~~~~~~~ 253 (263)
+.|+.|+.+++++.+..=+
T Consensus 27 l~Cc~PlGi~Ai~~s~kv~ 45 (82)
T PF04505_consen 27 LCCCWPLGIVAIVYSSKVR 45 (82)
T ss_pred HHHHhhHHHHHheechhhH
Confidence 6777799999998765433
No 64
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.53 E-value=1.8e+02 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHHhhcCCC
Q psy12169 8 CTSIWSMVMIAFDRYTVIVKGIT 30 (263)
Q Consensus 8 ~~S~~~l~~isidRy~aI~~P~~ 30 (263)
+.-+|-++.+.+|||+...-...
T Consensus 51 ~glvwgl~I~~lDR~ivss~~~~ 73 (301)
T PF14362_consen 51 FGLVWGLVIFNLDRFIVSSIRKS 73 (301)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 45788899999999998765543
No 65
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.00 E-value=1.4e+02 Score=18.76 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12169 101 ILIIYAYYFIVRAVSVHEK 119 (263)
Q Consensus 101 ~ii~~~y~~I~~~l~~~~~ 119 (263)
++++..|..+.+.-+|+.+
T Consensus 10 ~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHH
Confidence 4456667666665544433
No 66
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.89 E-value=2.4e+02 Score=19.03 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=12.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Q psy12169 96 YFVPLIL-IIYAYYFIVRAVSVHEK 119 (263)
Q Consensus 96 ~~~p~~i-i~~~y~~I~~~l~~~~~ 119 (263)
.++|+++ +++.|..+.+.=+|+.+
T Consensus 6 ~ll~lv~i~~i~yF~~iRPQkKr~K 30 (109)
T PRK05886 6 LFLPFLLIMGGFMYFASRRQRKAMQ 30 (109)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3345544 45667666554444433
No 67
>COG3771 Predicted membrane protein [Function unknown]
Probab=23.41 E-value=2.1e+02 Score=18.28 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12169 88 LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKM 128 (263)
Q Consensus 88 ~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~ 128 (263)
.-..+..+|.+-.++-...|.+.-.++.+-.|+.+++..+.
T Consensus 45 la~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~q~ 85 (97)
T COG3771 45 LATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRLENQL 85 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455667888888888999988888888777776666543
No 68
>KOG1380|consensus
Probab=22.33 E-value=35 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.790 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHhHHhhcc
Q psy12169 41 LRLMFVWVHALLWTLFPFFGWNR 63 (263)
Q Consensus 41 ~~i~~~W~~~~~~~~~~~~~~~~ 63 (263)
+-++-.|+.+++-++||++||.-
T Consensus 220 ihiinTWvGavVGAIPPLMGwAA 242 (409)
T KOG1380|consen 220 IHIINTWVGAVVGAIPPLMGWAA 242 (409)
T ss_pred hhhhhhHHHHHhccCCccchhhh
Confidence 45667899999999999999975
No 69
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.30 E-value=1.5e+02 Score=16.29 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12169 98 VPLILIIYAYYFIVRAVSVHEK 119 (263)
Q Consensus 98 ~p~~ii~~~y~~I~~~l~~~~~ 119 (263)
..++.+++.++.+....++++|
T Consensus 14 ~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHcccch
Confidence 3334444445555555554433
No 70
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.92 E-value=2.5e+02 Score=18.70 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=14.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy12169 99 PLIL-IIYAYYFIVRAVSVHEKQMREQA 125 (263)
Q Consensus 99 p~~i-i~~~y~~I~~~l~~~~~~~~~~~ 125 (263)
|+++ +++.|..+.+.-+|+.++.++..
T Consensus 23 ~lvii~~i~yf~~~RpqkK~~k~~~~~~ 50 (106)
T PRK05585 23 PLVVFFAIFYFLIIRPQQKRQKEHKKML 50 (106)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444 45567777776666655544333
No 71
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.09 E-value=49 Score=19.21 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=4.6
Q ss_pred HHHhHHH
Q psy12169 235 TMTTMTY 241 (263)
Q Consensus 235 ~icW~P~ 241 (263)
+.-|+||
T Consensus 56 v~vvL~~ 62 (64)
T COG4068 56 VMVVLPY 62 (64)
T ss_pred HHHhhcc
Confidence 5667765
Done!