RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12169
(263 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 192 bits (490), Expect = 5e-59
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFF 59
+G +FG SI +M MI+ DRY VI + + A K M+ A + ++FVW+ ++LW + P F
Sbjct: 113 FIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF 172
Query: 60 GWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 119
GW Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK
Sbjct: 173 GWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEK 232
Query: 120 QMREQAKKMNVATLRSGDQS 139
+M AK++N LR
Sbjct: 233 EMAAMAKRLNAKELRKAQAG 252
Score = 116 bits (293), Expect = 2e-30
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 140 GTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 199
G AY EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK
Sbjct: 173 GWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEK 232
Query: 200 QMREQAKKMNVATLRSGDQSGTSAEIKLAKV 230
+M AK++N LR Q+G +AE++LAK+
Sbjct: 233 EMAAMAKRLNAKELRKA-QAGANAEMRLAKI 262
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 173 bits (441), Expect = 1e-52
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFG 60
+L G ++WS+V++A +RY V+ K ++ A++ + F WV AL P G
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175
Query: 61 WNRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE 118
W+RY+PEG +CG DY T ++ ++ S++I+ + +PLI+I + Y +V V
Sbjct: 176 WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 119 KQMREQAKKMN 129
Q +E A
Sbjct: 236 AQQQESATTQK 246
Score = 89.8 bits (223), Expect = 5e-21
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 140 GTSAYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH 197
G S Y+PEG +CG DY T ++ ++ S++I+ + +PLI+I + Y +V V
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA 234
Query: 198 EKQMREQAKKMNVATLRSGDQSGTSAEIKLAKV 230
Q +E A AE ++ ++
Sbjct: 235 AAQQQESATTQ-------------KAEKEVTRM 254
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 72.5 bits (177), Expect = 9e-15
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 10/145 (6%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYV 65
SI+S++ IA DRY I + +T A + WV + L P GWN
Sbjct: 103 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 162
Query: 66 PEGNLTACGTDY-------LTKDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVH 117
L +D +Y++++ FF VPL+L++ Y I A
Sbjct: 163 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ 222
Query: 118 EKQMREQAKKMNVATLRSGDQSGTS 142
+ D G
Sbjct: 223 LNIFEMLRIDEGLRLKIYKDTEGYY 247
Score = 37.0 bits (85), Expect = 0.005
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 161 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 219
D +Y++++ FF VPL+L++ Y I A + D
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 220 GTSAEIKLAKVRSPPTMTT 238
G + P++
Sbjct: 245 GYYTIGIGHLLTKSPSLNA 263
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 70.9 bits (173), Expect = 3e-14
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYV 65
T SI+S+ ++ DRY + + + K T A ++ W + LW + P GWN ++
Sbjct: 92 STASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFM 150
Query: 66 PEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQA 125
+ ++ + + + +++P +L+++ Y I +AV H
Sbjct: 151 QQTSVRREDKCET-DFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLR 209
Query: 126 KKMNVATLRSGDQSGTSA 143
+ D G
Sbjct: 210 IDEGLRLKIYKDTEGYYT 227
Score = 33.9 bits (77), Expect = 0.053
Identities = 10/78 (12%), Positives = 24/78 (30%)
Query: 163 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 222
+ + +++P +L+++ Y I +AV H + D G
Sbjct: 167 DVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYY 226
Query: 223 AEIKLAKVRSPPTMTTMT 240
+ P++
Sbjct: 227 TIGIGHLLTKSPSLNAAK 244
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 70.6 bits (172), Expect = 4e-14
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 15/142 (10%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT----AKPMTIGGALLRLMFVWVHALLWTLFPFFGWN 62
CT SIW++ I+ DRYT +V + + L + VWV A + FG+N
Sbjct: 123 CTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFN 182
Query: 63 RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122
C + ++I+ +++P + + Y I + ++
Sbjct: 183 TTGDPT---VC-------SISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNI 232
Query: 123 EQAKKMNVATLRSGDQSGTSAY 144
+ +++ + Y
Sbjct: 233 FEMLRIDEGLRLKIYKDTEGYY 254
Score = 32.0 bits (72), Expect = 0.17
Identities = 4/46 (8%), Positives = 20/46 (43%)
Query: 164 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN 209
+ ++I+ +++P + + Y I + ++ + +++
Sbjct: 194 NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRID 239
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 69.1 bits (168), Expect = 1e-13
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 7/134 (5%)
Query: 5 LFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRY 64
+ S++S++ IA +RY ++K L + WV +L+ P GWN
Sbjct: 144 VALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI 203
Query: 65 VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 124
+ + +H+ Y++F V+ + L+ I+ Y I V +
Sbjct: 204 SALSSCSTV------LPLYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLR 256
Query: 125 AKKMNVATLRSGDQ 138
+ + +
Sbjct: 257 IDEGLRLKIYKDTE 270
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 68.8 bits (168), Expect = 1e-13
Identities = 31/192 (16%), Positives = 73/192 (38%), Gaps = 13/192 (6%)
Query: 5 LFGCTSIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFP-FFGWN 62
L SI ++ +IA DRY I +T A + ++ VW+ + L + P W
Sbjct: 264 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY 323
Query: 63 RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122
R + + + + +++Y I ++VPL+++++ Y + + +
Sbjct: 324 RATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA-------K 376
Query: 123 EQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSY----LIFYGFFVYFV 178
Q +K++ + R Q+ + H++ +I F + ++
Sbjct: 377 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 436
Query: 179 PLILIIYAYYFI 190
P ++ +
Sbjct: 437 PFFIVNIVHVIQ 448
Score = 32.2 bits (73), Expect = 0.16
Identities = 10/63 (15%), Positives = 30/63 (47%)
Query: 164 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 223
+++Y I ++VPL+++++ Y + + +++ + + +V L +Q G +
Sbjct: 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG 404
Query: 224 EIK 226
Sbjct: 405 HGL 407
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 69.0 bits (168), Expect = 1e-13
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFP-FFGWNRY 64
T SI ++ +IA DRY I +T A + ++ VW+ + L + P W R
Sbjct: 124 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRA 183
Query: 65 VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 124
+ + + + +++Y I ++VPL+++++ Y + +
Sbjct: 184 THQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEML 243
Query: 125 AKK 127
Sbjct: 244 RID 246
Score = 33.9 bits (77), Expect = 0.046
Identities = 9/75 (12%), Positives = 25/75 (33%)
Query: 164 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 223
+++Y I ++VPL+++++ Y + + + D G
Sbjct: 203 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYT 262
Query: 224 EIKLAKVRSPPTMTT 238
+ P++
Sbjct: 263 IGIGHLLTKSPSLNA 277
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 68.2 bits (166), Expect = 2e-13
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 8/139 (5%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYV 65
S+ ++++I+FDRY + K +T T A + + WV + + W V
Sbjct: 107 SNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIV 166
Query: 66 PEGNL--TACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 123
+ C + + + + +++P+I++ Y+ I RA
Sbjct: 167 GVRTVEDGECYIQFFS----NAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEM 222
Query: 124 QAKKMNVATLRSGDQSGTS 142
+ D G
Sbjct: 223 LRIDEGLRLKIYKDTEGYY 241
Score = 34.3 bits (78), Expect = 0.034
Identities = 9/76 (11%), Positives = 22/76 (28%)
Query: 163 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 222
+ + +++P+I++ Y+ I RA + D G
Sbjct: 182 SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYY 241
Query: 223 AEIKLAKVRSPPTMTT 238
+ P++
Sbjct: 242 TIGIGHLLTKSPSLNA 257
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 66.6 bits (162), Expect = 8e-13
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE 67
TSI+++ ++ DRY + + A T A + + W+ + L P
Sbjct: 102 TSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGL-PVMFMATTKYR 160
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMREQAK 126
C + W+ + L F + +P+++I Y ++ +
Sbjct: 161 QGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRI 220
Query: 127 KMNV 130
+
Sbjct: 221 DEGL 224
Score = 41.5 bits (97), Expect = 2e-04
Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 86 SYLIFYGFF--VYFVPLILI-IYAYYFIVRAVSVHEKQMREQAKKMNV-----ATLRSGD 137
+ +Y F ++ L + + Y + V + + AK +NV ++
Sbjct: 93 ISIDYYNMFTSIFT--LCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLP 150
Query: 138 QSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSV 196
+ C + W+ + L F + +P+++I Y ++ +
Sbjct: 151 VMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKS 210
Query: 197 HEKQMREQAKKMNV 210
+
Sbjct: 211 VRNIFEMLRIDEGL 224
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 65.9 bits (160), Expect = 1e-12
Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 8 CT-SIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYV 65
SI+S++ IA DRY I + +T A + WV + L P GWN
Sbjct: 113 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 172
Query: 66 P----EGNLTACGTDYLT---KDWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVH 117
+ + CG + +D +Y++++ FF VPL+L++ Y I A
Sbjct: 173 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ 232
Query: 118 EKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRS 166
+ + L+ +++ +A V + +
Sbjct: 233 LADLE-DNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPK 280
Score = 34.7 bits (79), Expect = 0.027
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 161 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 219
D +Y++++ FF VPL+L++ Y I A + + L+ +++
Sbjct: 195 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLE-DNWETLNDNLKVIEKA 253
Query: 220 GTSAEIKLAKVRSPPTMTTMTYILVNFYISGASHSDRQRGNHDP 263
+A++K A + + S +
Sbjct: 254 DNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHG 297
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 64.8 bits (158), Expect = 3e-12
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITAKPM-TIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE 67
TS +++ ++ DRY I I A + T A + +W A + + P E
Sbjct: 210 TSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGV-PVAIMGSAQVE 268
Query: 68 GNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVR----AVSVHEKQMR 122
C + T + F + VP+++I Y ++R + + +
Sbjct: 269 DEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREK 328
Query: 123 EQAKK 127
++ +
Sbjct: 329 DRNLR 333
Score = 39.8 bits (93), Expect = 6e-04
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 144 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVR----AVSVHE 198
E C + T + F + VP+++I Y ++R +
Sbjct: 265 AQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSG 324
Query: 199 KQMREQAKK 207
+ +++ +
Sbjct: 325 SREKDRNLR 333
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 61.6 bits (150), Expect = 3e-11
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 8 CTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE 67
SI+SM +AFDRY I+ + + ++ + + +WV ALL P ++
Sbjct: 117 FASIYSMTAVAFDRYMAIIHPLQPR-LSATATKVVICVIWVLALLLAF-PQGYYSTTETM 174
Query: 68 GNLTACGTDY--LTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVR 112
+ C ++ + + Y I +YF+PL++I YAY +
Sbjct: 175 PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI 221
Score = 31.9 bits (73), Expect = 0.19
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 144 YVPEGNLTACGTDY--LTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVR 192
+ C ++ + + Y I +YF+PL++I YAY +
Sbjct: 171 TETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI 221
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 59.9 bits (145), Expect = 1e-10
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 9 TSIWSMVMIAFDRYTVIVKGITAKPM-TIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE 67
+S+W + I+ DRY IV ++ + + + VW+ ALL T+ P F +
Sbjct: 132 SSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI-PDFIFANVSEA 190
Query: 68 GNLTACGTDYLTKDWHH--RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQA 125
+ C Y W + I G + P I+I+ Y I+ +S + E
Sbjct: 191 DDRYICDRFYPNDLWVVVFQFQHIMVGLIL---PGIVILSCYCIIISKLSHSGSNIFEML 247
Query: 126 KKMNVATLR 134
+ L+
Sbjct: 248 RIDEGLRLK 256
Score = 37.2 bits (86), Expect = 0.004
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 86 SYLIFYGFF--VYFVPLILI-IYAYYFIVRAVSVHEKQMREQAKKMNV-----ATLRSGD 137
+ + V+ L I + Y IV A + + K + V A L +
Sbjct: 123 HVIYTVNLYSSVWI--LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180
Query: 138 QSGTSAYVPEGNLTACGTDYLTKDWHH--RSYLIFYGFFVYFVPLILIIYAYYFIVRAVS 195
+ + C Y W + I G + P I+I+ Y I+ +S
Sbjct: 181 DFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLIL---PGIVILSCYCIIISKLS 237
Query: 196 VHEKQMREQAKKMNVATLR 214
+ E + L+
Sbjct: 238 HSGSNIFEMLRIDEGLRLK 256
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 59.4 bits (144), Expect = 2e-10
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 5 LFGCTSIWSMVMIAFDRYTVIVKGIT-AKPMTIGGALLRLMFVWVHALLWTLFPFF-GWN 62
L SI ++ +IA DRY I MT A + + VW + L + P W
Sbjct: 93 LCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWW 152
Query: 63 RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122
R L +R+Y I +++PL+++I+ + R +++
Sbjct: 153 RDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKID 212
Query: 123 EQAKKMN 129
+K+
Sbjct: 213 RASKRKT 219
Score = 30.5 bits (69), Expect = 0.49
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 165 RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAE 224
R+Y I +++PL+++I+ + R ++Q+R+ + T R A
Sbjct: 175 RAYAIASSIISFYIPLLIMIFVALRVYREA---KEQIRKIDRASKRKTSRVMLMREHKAL 231
Query: 225 IKLA 228
L
Sbjct: 232 KTLG 235
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 24.7 bits (54), Expect = 4.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 10 SIWSMVMIAFDRYTVIVKGIT 30
SI + I+ DRY I + I
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.445
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,204,665
Number of extensions: 242474
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 36
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.8 bits)