RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12169
         (263 letters)



>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna
          (Thunnus thynnus) [TaxId: 8237]}
          Length = 146

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 25 IVKGITAK--PMTIGGALLRLMFVWVHALLWTLFPFFG 60
          I+ GI A      IG   L      V+      F  +G
Sbjct: 10 IIAGIFANLNYEDIGPKALARCL-IVYPWTQRYFGAYG 46


>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 25.3 bits (55), Expect = 9.4
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 14  MVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFG---WNRYVPEGNL 70
            +  A  +Y +    ++  P+ +  AL   + +W  AL     P  G     R V     
Sbjct: 238 RIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 71  TACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN- 129
                  L+       + I Y   +        +    F V    +  K M ++   +  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIIT----CVMFGIFWVETTGLDPKSMAKRIGSLGM 353

Query: 130 -VATLRSGDQS 139
            +   R  +++
Sbjct: 354 AIKGFRKSEKA 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,029,688
Number of extensions: 46109
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.0 bits)