BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1217
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K5K|A Chain A, Solution Structure Of Rhr2 From Rhodobacter Sphaeroides.
Northeast Structural Genomics Consortium
Length = 70
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 106 EIGGPRGPEPTRYGDWERKGRVTDF 130
EIGG GPEP R+GDWE+KG DF
Sbjct: 38 EIGGRNGPEPVRFGDWEKKGIAIDF 62
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 EAWPDNTNPHKGYEITLKNVFDIPGKLEEL 80
EAWPD + K E +KNV D G ++ L
Sbjct: 370 EAWPDQHDVAKDSEAIIKNVIDKYGTIDIL 399
>pdb|3PWU|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule
N01801(Bola-A11)
pdb|3PWV|A Chain A, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
pdb|3PWV|D Chain D, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
Length = 274
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 43 PYQEKEPLEAWPDNTNPHKGY-EITLKNVFDIPGKLEELDAGKHPYQEKEPLEAWPD 98
P+ E+E E W NT +K +I N+ G + +AG H +QE PD
Sbjct: 49 PWMEQEGPEYWDRNTRIYKDTAQIFRANLNTALGYYNQSEAGSHTFQEMYGCYVGPD 105
>pdb|1KJV|A Chain A, Tap-B-Associated Rat Mhc Class I Molecule
Length = 284
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 44 YQEKEPLEAWPDNTNPHKGYEITLK-NVFDIPGKLEELDAGKHPYQE 89
+ E+E E W NT +KG E T + N+ + G + + G H QE
Sbjct: 51 WMEREGPEYWERNTPIYKGKEQTFRVNLRTLRGYYNQSEGGSHTIQE 97
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 7 CRVPAPGELYSKQVAIVIRSSKVPIGKLEELDAGKHPYQEKEPLEAWPDNTNPHKGYEIT 66
R P P K+ A V+++ KV +G + DA + + + E W D + Y +
Sbjct: 212 ARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWAS 271
Query: 67 LKN 69
+KN
Sbjct: 272 VKN 274
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 108 GGPRGPEPTRYGDWERK 124
GGPR P+ R G+W+++
Sbjct: 551 GGPRAPQGPRPGNWDQE 567
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 45 QEKEPLEAWPDNTNPHKGYEI 65
Q PL +WPDNTN K +
Sbjct: 113 QRFAPLNSWPDNTNLDKARRL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,903,897
Number of Sequences: 62578
Number of extensions: 224624
Number of successful extensions: 362
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 30
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)