BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1217
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VUM1|CF057_HUMAN UPF0369 protein C6orf57 OS=Homo sapiens GN=C6orf57 PE=2 SV=1
Length = 108
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 80 LDAGKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
DA + + EKEPLE +PD+ NP T E GGPRGPEPTRYGDWERKGR DF
Sbjct: 58 FDAPEDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108
>sp|Q8BTE0|CF057_MOUSE UPF0369 protein C6orf57 homolog OS=Mus musculus PE=2 SV=2
Length = 104
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 77 LEELDAGKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
L D+ + +E+EPL+ +PD+ NP T E GGP+GPEPTRYGDWERKGR DF
Sbjct: 51 LGRFDSLEDSPEEREPLQKFPDDVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104
>sp|Q54Y25|U369_DICDI UPF0369 protein OS=Dictyostelium discoideum GN=DDB_G0278459 PE=3
SV=1
Length = 108
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 100 TNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
NP T EIGGP+GPEPTRY DWER GRV+DF
Sbjct: 78 VNPITKEIGGPKGPEPTRYNDWERNGRVSDF 108
>sp|Q9ZDZ6|Y167_RICPR UPF0369 protein RP167 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP167 PE=3 SV=1
Length = 78
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 106 EIGGPRGPEPTRYGDWERKGRVTDF 130
EIGG +G EPTRYGDW+ KG+VTDF
Sbjct: 54 EIGGIKGLEPTRYGDWQHKGKVTDF 78
>sp|Q92J60|Y209_RICCN UPF0369 protein RC0209 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=RC0209 PE=3 SV=1
Length = 93
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 102 PHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
P EIGG +G EPTRYGDW+ KG+VTDF
Sbjct: 65 PKEKEIGGVKGLEPTRYGDWQHKGKVTDF 93
>sp|Q4UKG8|Y1112_RICFE UPF0369 protein RF_1112 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=RF_1112 PE=3 SV=1
Length = 78
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 107 IGGPRGPEPTRYGDWERKGRVTDF 130
IGG +G EPTRYGDW+ KG+VTDF
Sbjct: 55 IGGVKGLEPTRYGDWQHKGKVTDF 78
>sp|C6Y4C4|FMP21_SCHPO Protein fmp21, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fmp21 PE=2 SV=1
Length = 100
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 90 KEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
+E + + + NP TGEIGGP+ EPT +GD+ +GRVTDF
Sbjct: 61 REKHKDFEGDVNPKTGEIGGPKS-EPTVHGDYSYEGRVTDF 100
>sp|P38345|FMP21_YEAST Protein FMP21, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FMP21 PE=1 SV=2
Length = 138
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 77 LEELDAGKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
L + D G + + + + + NP TGE+GGP+ +P R+GD+ GRVTDF
Sbjct: 86 LTKNDIGSFSPEFSKTIPEFEGDVNPKTGEVGGPK-QDPLRHGDYSFNGRVTDF 138
>sp|Q6TMK3|HSP88_DICDI Heat shock protein 88 OS=Dictyostelium discoideum GN=hspH PE=1 SV=1
Length = 772
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 25 RSSKVPIGKLEELDAGKHPYQE-KEPLEAWPDNTNPHKGYEITLKNVFDIPGK 76
++ V GKLEEL +P Q+ K+ LE +PD K +KN IPG+
Sbjct: 615 QTKSVYAGKLEELRRLGNPIQKRKQDLEDYPDAVQTLKNIASYVKNEAMIPGE 667
>sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOG2 PE=1 SV=1
Length = 486
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 10 PAPGELYSKQVAIVIRSSKVPIGKLEELDAGKHPYQEKEPLEAWPDNTNP---HKGYEIT 66
A GE +++R +K+P+ LEE DA + P E++ D P K +
Sbjct: 94 SALGETQKDTYQVLLRRNKLPMSLLEEKDADESPKARILDTESYADAFGPKAQRKRPRLA 153
Query: 67 LKNVFDIPGKLEELDAGKHPYQEKEPLEA 95
N+ D+ E D K Y+EK+ L+A
Sbjct: 154 ASNLEDLVKATNE-DITK--YEEKQVLDA 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,641,437
Number of Sequences: 539616
Number of extensions: 2755968
Number of successful extensions: 4378
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4349
Number of HSP's gapped (non-prelim): 50
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)