Query psy1217
Match_columns 130
No_of_seqs 135 out of 239
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 20:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3245|consensus 99.9 1.9E-24 4E-29 160.0 4.3 83 4-130 21-106 (106)
2 PF07896 DUF1674: Protein of u 99.8 5.5E-20 1.2E-24 119.7 0.2 44 83-130 4-47 (47)
3 COG5508 Uncharacterized conser 99.4 3.8E-14 8.2E-19 101.9 1.9 29 102-130 56-84 (84)
4 PF12124 Nsp3_PL2pro: Coronavi 17.0 57 0.0012 22.7 0.5 13 117-129 14-26 (66)
5 KOG3102|consensus 15.8 2.5E+02 0.0055 24.3 4.1 24 93-117 41-64 (269)
6 PF01989 DUF126: Protein of un 15.0 75 0.0016 22.6 0.7 16 95-110 3-18 (82)
7 COG1786 Swiveling domain assoc 15.0 85 0.0018 24.6 1.1 18 95-112 25-42 (131)
8 cd07496 Peptidases_S8_13 Pepti 9.6 3.8E+02 0.0083 21.1 3.3 43 83-125 13-55 (285)
9 cd05853 Ig6_Contactin-4 Sixth 9.3 1.4E+02 0.003 20.4 0.6 11 120-130 20-30 (85)
10 PF06419 COG6: Conserved oligo 7.8 1.3E+02 0.0028 27.7 -0.1 7 114-120 249-256 (618)
No 1
>KOG3245|consensus
Probab=99.90 E-value=1.9e-24 Score=159.97 Aligned_cols=83 Identities=53% Similarity=0.920 Sum_probs=72.1
Q ss_pred cceeccCCCCCchhhhhhhh--hhccCCCCccchhhccCCCCCC-cCCcCCCCCCCCCCCCcccccccccccCCCcchhc
Q psy1217 4 ARLCRVPAPGELYSKQVAIV--IRSSKVPIGKLEELDAGKHPYQ-EKEPLEAWPDNTNPHKGYEITLKNVFDIPGKLEEL 80 (130)
Q Consensus 4 ~r~c~~p~~~~~~sk~~~~~--~~~~~~p~~~l~~~~~~~H~~~-~KEPl~~w~~NqsP~sG~~~~~k~~~d~~~~~~e~ 80 (130)
+|+.+.+.+....||++..+ +.-++.|...|+++ .+.|+++ +||||+.|
T Consensus 21 ~~s~ll~~~~~k~~k~~~~~qel~r~~~p~~~L~e~-~a~~~~~~Ekepl~~~--------------------------- 72 (106)
T KOG3245|consen 21 ARSELLCHPLRKTSKSQGAFQELLRQSLPLPMLPEG-DAPHPSHLEKEPLKPW--------------------------- 72 (106)
T ss_pred ccccccCCCCCCCccccchhHHHHHhhcCccccccc-cccChhhhhcccCCCC---------------------------
Confidence 46777778899999988887 33377899999998 4788888 88888888
Q ss_pred ccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCeeecC
Q psy1217 81 DAGKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130 (130)
Q Consensus 81 ~~~~hP~~~~~~~~~f~~~vnp~tgE~gGpk~~EPtryGDWe~~Gr~~DF 130 (130)
+++|||.|||||||.|+|||||||||++|||+||
T Consensus 73 ----------------p~~vNp~TgEiGGprGPEPTRYGDWErkgr~~~F 106 (106)
T KOG3245|consen 73 ----------------PNDVNPYTGEIGGPRGPEPTRYGDWERKGRCSDF 106 (106)
T ss_pred ----------------cccCCccccccCCCCCCCCccccchhhccccccC
Confidence 6789999999999999999999999999999999
No 2
>PF07896 DUF1674: Protein of unknown function (DUF1674); InterPro: IPR012875 The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long. ; PDB: 2K5K_A.
Probab=99.76 E-value=5.5e-20 Score=119.65 Aligned_cols=44 Identities=61% Similarity=1.224 Sum_probs=7.8
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCeeecC
Q psy1217 83 GKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130 (130)
Q Consensus 83 ~~hP~~~~~~~~~f~~~vnp~tgE~gGpk~~EPtryGDWe~~Gr~~DF 130 (130)
..|++++.... .+++|+|+|+|||+|+|||||||||+|||||||
T Consensus 4 ~rr~~~~~~~~----~~~~P~~~E~gGp~g~ePtRyGDWe~kGr~~DF 47 (47)
T PF07896_consen 4 ERRPDARAAAK----GDVNPKTGEIGGPKGPEPTRYGDWERKGRASDF 47 (47)
T ss_dssp T--TTTTT----------------S---------S-------STT---
T ss_pred HHhhhHhhccc----cccCCCccccCCCCCCCCccccccccCCEeccC
Confidence 34555443222 889999999999999999999999999999999
No 3
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=99.43 E-value=3.8e-14 Score=101.89 Aligned_cols=29 Identities=69% Similarity=1.212 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCCCCcccccccCCeeecC
Q psy1217 102 PHTGEIGGPRGPEPTRYGDWERKGRVTDF 130 (130)
Q Consensus 102 p~tgE~gGpk~~EPtryGDWe~~Gr~~DF 130 (130)
++..||||.+|+|||||||||.|||||||
T Consensus 56 s~pkEiGGrgGlePtRyGDWe~KGr~iDF 84 (84)
T COG5508 56 SLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84 (84)
T ss_pred ccchhhCCCCCCCccccccccccceecCC
Confidence 46789999999999999999999999999
No 4
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=16.97 E-value=57 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=6.5
Q ss_pred cccccccCCeeec
Q psy1217 117 RYGDWERKGRVTD 129 (130)
Q Consensus 117 ryGDWe~~Gr~~D 129 (130)
.|-||++.|..+.
T Consensus 14 sy~dwsysgqrte 26 (66)
T PF12124_consen 14 SYRDWSYSGQRTE 26 (66)
T ss_dssp EETTEE----EET
T ss_pred cccccccccceeh
Confidence 3779999997664
No 5
>KOG3102|consensus
Probab=15.76 E-value=2.5e+02 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCc
Q psy1217 93 LEAWPDNTNPHTGEIGGPRGPEPTR 117 (130)
Q Consensus 93 ~~~f~~~vnp~tgE~gGpk~~EPtr 117 (130)
+|.-.-.++|++|---++.. .||.
T Consensus 41 lp~~dsil~pkpg~eef~eD-vpte 64 (269)
T KOG3102|consen 41 LPLLDSILSPKPGSEEFFED-VPTE 64 (269)
T ss_pred CCchhhhcCCCCCccccccc-Cccc
Confidence 33333455555555555544 3443
No 6
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=15.05 E-value=75 Score=22.55 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCC
Q psy1217 95 AWPDNTNPHTGEIGGP 110 (130)
Q Consensus 95 ~f~~~vnp~tgE~gGp 110 (130)
.|=+++||+||++--+
T Consensus 3 Sf~ggvDp~tG~ii~~ 18 (82)
T PF01989_consen 3 SFWGGVDPETGVIIDK 18 (82)
T ss_dssp -TTS-B-TTT-BB-S-
T ss_pred cccccccCCceEEEec
Confidence 4789999999999644
No 7
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=15.01 E-value=85 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q psy1217 95 AWPDNTNPHTGEIGGPRG 112 (130)
Q Consensus 95 ~f~~~vnp~tgE~gGpk~ 112 (130)
.|=|.|||.||++-+++-
T Consensus 25 SFlGgVDPeTG~vid~~h 42 (131)
T COG1786 25 SFLGGVDPETGKVIDPHH 42 (131)
T ss_pred eeecccCcccccCcCCCC
Confidence 689999999999998753
No 8
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=9.61 E-value=3.8e+02 Score=21.08 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q psy1217 83 GKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKG 125 (130)
Q Consensus 83 ~~hP~~~~~~~~~f~~~vnp~tgE~gGpk~~EPtryGDWe~~G 125 (130)
..||++....+..+.-..+.....-|.....+|...+||...+
T Consensus 13 ~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 55 (285)
T cd07496 13 FHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGD 55 (285)
T ss_pred CCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccc
Confidence 4688887666555532223333333434455788888987654
No 9
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=9.30 E-value=1.4e+02 Score=20.43 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=9.5
Q ss_pred ccccCCeeecC
Q psy1217 120 DWERKGRVTDF 130 (130)
Q Consensus 120 DWe~~Gr~~DF 130 (130)
.|.++|+.+||
T Consensus 20 ~W~~dg~~i~~ 30 (85)
T cd05853 20 TWSFNGHLIDF 30 (85)
T ss_pred EEEECCEECcc
Confidence 89999998875
No 10
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=7.79 E-value=1.3e+02 Score=27.68 Aligned_cols=7 Identities=71% Similarity=1.559 Sum_probs=6.2
Q ss_pred CCCcc-cc
Q psy1217 114 EPTRY-GD 120 (130)
Q Consensus 114 EPtry-GD 120 (130)
||+|| ||
T Consensus 249 DP~RYvGD 256 (618)
T PF06419_consen 249 DPLRYVGD 256 (618)
T ss_pred ChHHHHHH
Confidence 89998 87
Done!