Query psy1217
Match_columns 130
No_of_seqs 135 out of 239
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 20:28:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5k_A Uncharacterized protein 99.5 4.4E-15 1.5E-19 102.7 3.0 30 101-130 33-62 (70)
2 4b2v_A S64; toxin, ICK; NMR {S 19.0 88 0.003 18.3 2.5 21 106-128 5-25 (32)
3 2i9n_A MHB4A peptide; beta-hai 14.1 60 0.002 19.2 0.9 10 119-128 2-11 (33)
4 2i9o_A MHB8A peptide; beta-hai 10.5 83 0.0028 18.9 0.7 10 119-128 2-11 (37)
5 2kaf_A Non-structural protein 9.4 93 0.0032 20.9 0.8 12 118-129 16-27 (67)
6 3lrr_A Probable ATP-dependent 8.3 87 0.003 22.6 0.3 14 115-128 48-61 (121)
7 4a2v_A RIG-I, retinoic acid in 8.3 98 0.0033 22.7 0.5 14 115-128 50-63 (131)
8 2hi6_A UPF0107 protein AF0055; 7.8 1.4E+02 0.0047 22.2 1.2 13 95-107 26-38 (141)
9 3eqt_A ATP-dependent RNA helic 7.7 1.1E+02 0.0037 22.9 0.5 15 114-128 57-71 (145)
10 3arc_O Photosystem II manganes 6.4 68 0.0023 26.2 -1.2 12 99-110 200-211 (243)
No 1
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=99.51 E-value=4.4e-15 Score=102.71 Aligned_cols=30 Identities=57% Similarity=1.101 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCeeecC
Q psy1217 101 NPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130 (130)
Q Consensus 101 np~tgE~gGpk~~EPtryGDWe~~Gr~~DF 130 (130)
...+.|+|||+|+|||||||||+|||||||
T Consensus 33 ~~~p~E~GG~~G~EPtRYGDWE~kG~a~~~ 62 (70)
T 2k5k_A 33 LDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62 (70)
T ss_dssp CCCCCCSCCCCCCCCCSCCCCCCCSTTCCC
T ss_pred ccCCcccCCCCCCCCcccccchhcceeehh
Confidence 356899999999999999999999999998
No 2
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=19.03 E-value=88 Score=18.32 Aligned_cols=21 Identities=48% Similarity=0.931 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCcccccccCCeee
Q psy1217 106 EIGGPRGPEPTRYGDWERKGRVT 128 (130)
Q Consensus 106 E~gGpk~~EPtryGDWe~~Gr~~ 128 (130)
|-||=- ++|-+.|||- -|||+
T Consensus 5 enggfc-pdpekmgdwc-cgrci 25 (32)
T 4b2v_A 5 ENGGFC-PDPEKMGDWC-CGRCI 25 (32)
T ss_dssp CTTCBC-CCTTTTCCCC-SSEEE
T ss_pred hcCCcC-CChHHhcchh-hhHHH
Confidence 556654 5999999996 46765
No 3
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=14.05 E-value=60 Score=19.15 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=8.2
Q ss_pred cccccCCeee
Q psy1217 119 GDWERKGRVT 128 (130)
Q Consensus 119 GDWe~~Gr~~ 128 (130)
|.|.+||+..
T Consensus 2 gkwtyngity 11 (33)
T 2i9n_A 2 GKWTYNGITY 11 (33)
T ss_dssp CCCBSSSCBC
T ss_pred CceeECCEEe
Confidence 7899999864
No 4
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=10.51 E-value=83 Score=18.94 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=8.1
Q ss_pred cccccCCeee
Q psy1217 119 GDWERKGRVT 128 (130)
Q Consensus 119 GDWe~~Gr~~ 128 (130)
|.|.+||+..
T Consensus 2 gkwtyngity 11 (37)
T 2i9o_A 2 GKWTYNGITY 11 (37)
T ss_dssp CCCCSSSCCC
T ss_pred CceeECCEEe
Confidence 7899999764
No 5
>2kaf_A Non-structural protein 3; SARS-unique domain-C, automation in structure determination, viral protein; NMR {Sars coronavirus}
Probab=9.44 E-value=93 Score=20.86 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.4
Q ss_pred ccccccCCeeec
Q psy1217 118 YGDWERKGRVTD 129 (130)
Q Consensus 118 yGDWe~~Gr~~D 129 (130)
|-||++.|..+.
T Consensus 16 y~dWsysgqrte 27 (67)
T 2kaf_A 16 YRDWSYSGQRTE 27 (67)
T ss_dssp ETTEECCCCEET
T ss_pred ccCceeecccch
Confidence 679999987654
No 6
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=8.33 E-value=87 Score=22.62 Aligned_cols=14 Identities=14% Similarity=0.759 Sum_probs=11.7
Q ss_pred CCcccccccCCeee
Q psy1217 115 PTRYGDWERKGRVT 128 (130)
Q Consensus 115 PtryGDWe~~Gr~~ 128 (130)
|-+|+||+.+|.+.
T Consensus 48 ~k~f~d~~~~g~I~ 61 (121)
T 3lrr_A 48 PKQFSSFEKRAKIF 61 (121)
T ss_dssp CCEETTEEEEEEEE
T ss_pred CchhhcccCCcEEE
Confidence 67799999999863
No 7
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=8.31 E-value=98 Score=22.71 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.6
Q ss_pred CCcccccccCCeee
Q psy1217 115 PTRYGDWERKGRVT 128 (130)
Q Consensus 115 PtryGDWe~~Gr~~ 128 (130)
|-+|+||+.+|.+.
T Consensus 50 ~k~f~d~~~~g~I~ 63 (131)
T 4a2v_A 50 PMQFDGFEKKSKMY 63 (131)
T ss_dssp CCCTTSEEEEEEEE
T ss_pred CchhhcccCCcEEE
Confidence 67799999999863
No 8
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=7.81 E-value=1.4e+02 Score=22.17 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCC
Q psy1217 95 AWPDNTNPHTGEI 107 (130)
Q Consensus 95 ~f~~~vnp~tgE~ 107 (130)
.|=+++||+||++
T Consensus 26 SF~GgvDp~tG~i 38 (141)
T 2hi6_A 26 SFLGGIDKETGIV 38 (141)
T ss_dssp CTTSCBCTTTCBB
T ss_pred eEeeeecCCCCEE
Confidence 5779999999999
No 9
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=7.73 E-value=1.1e+02 Score=22.93 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=11.8
Q ss_pred CCCcccccccCCeee
Q psy1217 114 EPTRYGDWERKGRVT 128 (130)
Q Consensus 114 EPtryGDWe~~Gr~~ 128 (130)
-|-.|+||+.+|.+.
T Consensus 57 ~~k~f~d~~~~g~I~ 71 (145)
T 3eqt_A 57 INKVFKDWKPGGVIS 71 (145)
T ss_dssp CSSCCSSEEEEEEEE
T ss_pred CCcccccccCCcEEE
Confidence 456789999999863
No 10
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=6.44 E-value=68 Score=26.24 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCC
Q psy1217 99 NTNPHTGEIGGP 110 (130)
Q Consensus 99 ~vnp~tgE~gGp 110 (130)
-||+.||||+|-
T Consensus 200 kvd~~TGEiaGv 211 (243)
T 3arc_O 200 KVDGRTGEIAGT 211 (243)
T ss_dssp EEETTTTEEEEE
T ss_pred eeCCCCceEEEE
Confidence 689999999984
Done!