Query psy1217
Match_columns 130
No_of_seqs 135 out of 239
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 20:29:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa1 a.159.1.1 (A:297-368) 10.9 33 0.0024 21.5 0.5 19 10-28 50-68 (72)
2 d1zaka2 g.41.2.1 (A:128-158) M 9.1 36 0.0026 18.5 0.2 9 100-108 4-12 (31)
3 d2axto1 f.4.1.4 (O:30-271) Man 8.7 32 0.0023 26.2 -0.2 12 99-110 200-211 (242)
4 d1k0ra4 d.202.1.1 (A:-4-99) Tr 5.8 3.2E+02 0.023 17.0 3.8 39 69-107 20-60 (104)
5 d1p71a_ a.55.1.1 (A:) HU prote 4.9 1E+02 0.0074 18.6 0.7 9 99-107 60-68 (94)
6 d2vv5a1 b.38.1.3 (A:113-179) M 4.6 97 0.0071 17.7 0.5 9 114-122 16-24 (67)
7 d1mwwa_ d.80.1.4 (A:) Hypothet 4.5 97 0.0071 19.2 0.4 9 119-127 107-115 (120)
8 d1exea_ a.55.1.1 (A:) Transcri 4.4 1.3E+02 0.0096 18.4 1.1 10 99-108 60-69 (99)
9 d1jkza_ g.3.7.5 (A:) Defensin 4.4 1.1E+02 0.008 17.8 0.6 7 124-130 32-38 (46)
10 d1owfb_ a.55.1.1 (B:) Integrat 4.2 1.2E+02 0.009 18.4 0.7 9 99-107 61-69 (94)
No 1
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.86 E-value=33 Score=21.52 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=14.9
Q ss_pred CCCCCchhhhhhhhhhccC
Q psy1217 10 PAPGELYSKQVAIVIRSSK 28 (130)
Q Consensus 10 p~~~~~~sk~~~~~~~~~~ 28 (130)
|-.++++||+..|+-.+++
T Consensus 50 PPGGGL~sK~~~IE~vy~~ 68 (72)
T d1a6qa1 50 PPGGELASKRNVIEAVYNR 68 (72)
T ss_dssp CTTTGGGGGHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 6678899999999865543
No 2
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=9.10 E-value=36 Score=18.50 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q psy1217 100 TNPHTGEIG 108 (130)
Q Consensus 100 vnp~tgE~g 108 (130)
+||.||||-
T Consensus 4 ~DP~TG~iY 12 (31)
T d1zaka2 4 LDPVTGKIY 12 (31)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCcEe
Confidence 578888873
No 3
>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.67 E-value=32 Score=26.20 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCC
Q psy1217 99 NTNPHTGEIGGP 110 (130)
Q Consensus 99 ~vnp~tgE~gGp 110 (130)
-||+.||||+|-
T Consensus 200 kVd~~TGEiaGv 211 (242)
T d2axto1 200 KVDGRTGEIAGT 211 (242)
T ss_dssp ECCTTTCEEEEE
T ss_pred eeCCCCCcEEEE
Confidence 699999999984
No 4
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.77 E-value=3.2e+02 Score=17.03 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=21.8
Q ss_pred ccccCCCcchhcccCCCCCccCCC--CCCCCCCCCCCCCCC
Q psy1217 69 NVFDIPGKLEELDAGKHPYQEKEP--LEAWPDNTNPHTGEI 107 (130)
Q Consensus 69 ~~~d~~~~~~e~~~~~hP~~~~~~--~~~f~~~vnp~tgE~ 107 (130)
+.|+....++-+++++.-.+++.. ...+.=.+|+.||++
T Consensus 20 KgI~~e~li~aie~Al~~Aykk~~g~~~~i~V~id~~tG~i 60 (104)
T d1k0ra4 20 RGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVV 60 (104)
T ss_dssp TTBCSSTTTTSSTTTTTSSGGGSSSCCSSCCCCCCSSSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccCCccceEEEEECCCCeE
Confidence 445554445555555555454432 234455778888876
No 5
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=4.88 E-value=1e+02 Score=18.62 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=7.3
Q ss_pred CCCCCCCCC
Q psy1217 99 NTNPHTGEI 107 (130)
Q Consensus 99 ~vnp~tgE~ 107 (130)
..||+|||.
T Consensus 60 grNP~Tge~ 68 (94)
T d1p71a_ 60 GRNPKTNEK 68 (94)
T ss_dssp EECTTTCCE
T ss_pred eECCCCCCE
Confidence 579999885
No 6
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=97 Score=17.73 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=7.2
Q ss_pred CCCcccccc
Q psy1217 114 EPTRYGDWE 122 (130)
Q Consensus 114 EPtryGDWe 122 (130)
.|.|-|||-
T Consensus 16 ~pf~vGD~I 24 (67)
T d2vv5a1 16 RPFRAGEYV 24 (67)
T ss_dssp CSSCTTCEE
T ss_pred CCccCCCEE
Confidence 588889995
No 7
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=4.51 E-value=97 Score=19.16 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=5.9
Q ss_pred cccccCCee
Q psy1217 119 GDWERKGRV 127 (130)
Q Consensus 119 GDWe~~Gr~ 127 (130)
.||.++|..
T Consensus 107 ~~W~~~G~t 115 (120)
T d1mwwa_ 107 HCWGFRGMT 115 (120)
T ss_dssp GGEEETTEE
T ss_pred HHeEECCEE
Confidence 467777764
No 8
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=4.45 E-value=1.3e+02 Score=18.41 Aligned_cols=10 Identities=40% Similarity=0.358 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q psy1217 99 NTNPHTGEIG 108 (130)
Q Consensus 99 ~vnp~tgE~g 108 (130)
..||+|||.-
T Consensus 60 grNP~Tge~i 69 (99)
T d1exea_ 60 GFNPQTQEAL 69 (99)
T ss_dssp CCCSSSSSCC
T ss_pred cCCcCCCCEE
Confidence 5899999864
No 9
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]}
Probab=4.36 E-value=1.1e+02 Score=17.79 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=3.9
Q ss_pred CCeeecC
Q psy1217 124 KGRVTDF 130 (130)
Q Consensus 124 ~Gr~~DF 130 (130)
.|||.||
T Consensus 32 SGrCrdf 38 (46)
T d1jkza_ 32 SGTCHNW 38 (46)
T ss_dssp CEEEETT
T ss_pred ccceecc
Confidence 4555555
No 10
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=4.19 E-value=1.2e+02 Score=18.38 Aligned_cols=9 Identities=44% Similarity=0.811 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q psy1217 99 NTNPHTGEI 107 (130)
Q Consensus 99 ~vnp~tgE~ 107 (130)
..||+|||.
T Consensus 61 grNP~Tge~ 69 (94)
T d1owfb_ 61 GRNPKTGDK 69 (94)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCCE
Confidence 478888884
Done!