RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1217
(130 letters)
>gnl|CDD|219626 pfam07896, DUF1674, Protein of unknown function (DUF1674). The
members of this family are sequences derived from
hypothetical eukaryotic and bacterial proteins. The
region in question is approximately 60 residues long.
Length = 41
Score = 64.1 bits (157), Expect = 3e-15
Identities = 27/42 (64%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 89 EKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGRVTDF 130
E E + GEIGGP+GPEPTRYGDWERKGRVTDF
Sbjct: 1 EAEERRPAAAKA-VNPGEIGGPKGPEPTRYGDWERKGRVTDF 41
>gnl|CDD|227795 COG5508, COG5508, Uncharacterized conserved small protein [Function
unknown].
Length = 84
Score = 49.9 bits (119), Expect = 3e-09
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 106 EIGGPRGPEPTRYGDWERKGRVTDF 130
EIGG G EPTRYGDWE KGRV DF
Sbjct: 60 EIGGRGGLEPTRYGDWEHKGRVIDF 84
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 29.1 bits (65), Expect = 0.62
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 20/96 (20%)
Query: 21 AIVIR------SSKVPIGKLEELDAGKHPYQEKEPLE--AWPDNTNPHKGYEITLKNVFD 72
A V+R K P E A K P Q+ + + D + K+
Sbjct: 999 AAVVRVGGIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDN--------KDPLT 1050
Query: 73 IPGKLEELDAGKHPYQEKEPLEAWPDNTN--PHTGE 106
PG +E G+ P +E E PD P+TG
Sbjct: 1051 PPGSDDE--NGETPKGNEEKKEEQPDKGANLPNTGT 1084
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase
(P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is
involved in the pipecolic acid pathway of lysine
catabolism, catalyzing the oxidation of
alpha-aminoadipic semialdehyde to alpha-aminoadipate.
Arabidopsis thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 27.9 bits (63), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 9 VPAP--GELYSKQVAIVIRSSKVPIGKLEELDAGKHPYQE 46
VPAP GE+ +Q+ +R K +GKL L+ GK E
Sbjct: 53 VPAPKRGEIV-RQIGDALRKKKEALGKLVSLEMGK-ILPE 90
>gnl|CDD|240710 cd12264, RRM_AKAP17A, RNA recognition motif found in A-kinase
anchor protein 17A (AKAP-17A) and similar proteins.
This subfamily corresponds to the RRM domain of
AKAP-17A, also termed 721P, or splicing factor,
arginine/serine-rich 17A (SFRS17A). It was originally
reported as the pseudoautosomal or X inactivation escape
gene 7 (XE7) and as B-lymphocyte antigen precursor. It
has been suggested that AKAP-17A is an alternative
splicing factor and an SR-related splicing protein that
interacts with the classical SR protein ASF/SF2 and the
SR-related factor ZNF265. Additional studies have
indicated that AKAP-17A is a dual-specific protein
kinase A anchoring protein (AKAP) that can bind both
type I and type II protein kinase A (PKA) with high
affinity and co-localizes with the catalytic subunit of
PKA in nuclear speckles as well as the splicing factor
SC35 in splicing factor compartments. It is involved in
regulation of pre-mRNA splicing possibly by docking a
pool of PKA in splicing factor compartments. AKAP-17A
contains an RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain).
.
Length = 121
Score = 27.2 bits (61), Expect = 1.6
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 59 PHKGYEITLKNVFDIPGKLEELD-AGKHPYQEKEPLEAWPDNTNPHTGEIGGP 110
K E+ L+ VF G++ +D PY+++ D+ T G
Sbjct: 23 SDKPSELVLRTVFSKFGEIRNVDIPMLDPYRKE------MDDRGSDTFSFGSH 69
>gnl|CDD|182482 PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional.
Length = 567
Score = 27.4 bits (61), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 81 DAGKHP-YQEKEPLEAWPDNTNP-HTG 105
++ KH Y+++ P W T P + G
Sbjct: 329 ESAKHAWYKDEAPQAPWEGTTIPAYDG 355
Score = 27.0 bits (60), Expect = 3.6
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 38 DAGKHP-YQEKEPLEAWPDNTNP 59
++ KH Y+++ P W T P
Sbjct: 329 ESAKHAWYKDEAPQAPWEGTTIP 351
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences,
such as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 27.1 bits (61), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 8 RVPAP--GELYSKQVAIVIRSSKVPIGKLEELDAGKHPYQE 46
+VPAP GE+ +Q+ +R K +G+L L+ GK E
Sbjct: 53 KVPAPRRGEIV-RQIGEALRKKKEALGRLVSLEMGK-ILPE 91
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 27.0 bits (60), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 22 IVIRSSKVPIGKLEELDA 39
VIRSS +PIG L+E+D
Sbjct: 670 EVIRSSNLPIGILDEVDV 687
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain.
RanBP3, a Ran-interacting nuclear protein, unlike the
related proteins RanBP1 and RanBP2, which promote
disassembly of the export complex in the cytosol, acts
as a CRM1 cofactor, enhancing nuclear export signal
(NES) export by stabilizing the export complex in the
nucleus. CRM1/Exportin1 is responsible for exporting
many proteins and ribonucleoproteins from the nucleus
to the cytosol. RanBP3 also alters the cargo
selectivity of CRM1, promoting recognition of the NES
of HIV-1 Rev and of other cargos while deterring
recognition of the import adaptor protein Snurportin1.
RanBP3 contains a N-terminal nuclear localization
signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD
shares structural similarity to the PH domain, but
lacks detectable sequence similarity.
Length = 113
Score = 25.7 bits (57), Expect = 6.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 68 KNVFDIPGKLEELDAGKHPYQEK 90
+NV I KL D K + E+
Sbjct: 3 RNVLQINCKLFAFDKSKQSWVER 25
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 26.3 bits (58), Expect = 6.5
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 67 LKNVFDIPGKLEELDAGKHPYQEKEPLEAWPDNTNPHTGEIGGPRGPEPTRYGDWERKGR 126
+KN ++P KL E G + Q E L PD TRY +W+++ +
Sbjct: 228 IKNRLEVPAKLYEQMFGPNGPQTLEELGDIPD---------------AETRYKEWKKEHK 272
Query: 127 VTD 129
D
Sbjct: 273 DDD 275
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 25.8 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 16 YSKQVAIVIRSSKVPIGKLEELDAGKHPYQEKE 48
Y + +A I K + KLE LD GK P E
Sbjct: 77 YLRAIAAKITERKSELAKLETLDCGK-PLDEAA 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.137 0.430
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,933,607
Number of extensions: 607122
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 23
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)