RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1217
         (130 letters)



>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; NMR {Rhodobacter sphaeroides 2}
          Length = 70

 Score = 53.0 bits (127), Expect = 9e-11
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 106 EIGGPRGPEPTRYGDWERKGRVTDF 130
           EIGG  GPEP R+GDWE+KG   DF
Sbjct: 38  EIGGRNGPEPVRFGDWEKKGIAIDF 62


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,151,088
Number of extensions: 119490
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 8
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.3 bits)