RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1217
         (130 letters)



>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 174

 Score = 23.8 bits (51), Expect = 6.3
 Identities = 9/46 (19%), Positives = 11/46 (23%)

Query: 43 PYQEKEPLEAWPDNTNPHKGYEITLKNVFDIPGKLEELDAGKHPYQ 88
          P +     E     T P K     L+N             G    Q
Sbjct: 48 PGETANATEVKKCLTQPLKNLCQKLRNKVSNTKVDTHKTNGYPHLQ 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,732
Number of extensions: 24425
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.5 bits)