BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12170
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 6 ESDVEEVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQFLTFIGLNHPT 65
E+ +E+ V E+E + ++RP ALE L Q+KFT++E++++YRGFK +N T
Sbjct: 29 EAGLEDSVEDELEMA--TVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEET 86
Query: 66 LKD 68
K+
Sbjct: 87 FKE 89
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 26 YRPIALEDLLKQTKFTRQEIRVMYRGFKQFLTFIGLNHPTLK 67
+RP LE L QT FT++E++V+YRGFK +N T K
Sbjct: 34 HRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFK 75
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And
Kv4.2 N1-30
Length = 183
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 26 YRPIALEDLLKQTKFTRQEIRVMYRGFK 53
+RP LE L QT FT++E++V+YRGFK
Sbjct: 1 HRPEGLEQLEAQTNFTKRELQVLYRGFK 28
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 5 DESDVEEVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFK 53
D SD E E+ + +H +P L+ L QTKFT++E++ +YRGFK
Sbjct: 61 DSSDSE----LELSTVRH----QPEGLDQLQAQTKFTKKELQSLYRGFK 101
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 29 IALEDLLKQTKFTRQEIRVMYRGFK 53
+ LE L QT FT++E++V+YRGFK
Sbjct: 1 MGLEQLEAQTNFTKRELQVLYRGFK 25
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
Length = 193
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 20 SKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGF 52
K K RP ++DLL+ T FT EI+ Y+GF
Sbjct: 2 GKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGF 34
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 30 ALEDLLKQTKFTRQEIRVMYRGFK 53
LE L QT FT++E++V+YRGFK
Sbjct: 2 GLEQLEAQTNFTKRELQVLYRGFK 25
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 SKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGF 52
K K +P +E+L ++T FT +E++ Y+GF
Sbjct: 2 GKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGF 34
>pdb|2ATM|A Chain A, Crystal Structure Of The Recombinant Allergen Ves V 2
Length = 331
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 16 EIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGF 52
E+E+SK +KY +E+ LK K TR++ Y G+
Sbjct: 146 ELEASKRFEKYARFFMEETLKLAKKTRKQADWGYYGY 182
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo
Form
Length = 190
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGF 52
L+DL++ T+F ++E++ Y+GF
Sbjct: 13 LQDLVRSTRFDKKELQQWYKGF 34
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 YRPIALEDLLKQTKFTRQE-IRVMYRGFKQFLTF 58
+R I L+DL++Q RQE I+ Y KQ L F
Sbjct: 169 FRLIYLKDLVQQINIRRQEKIKCFYEYLKQALDF 202
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 YRPIALEDLLKQTKFTRQE-IRVMYRGFKQFLTF 58
+R I L+DL++Q RQE I+ Y KQ L F
Sbjct: 169 FRLIYLKDLVQQINIRRQEKIKCFYEYLKQALDF 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,021,894
Number of Sequences: 62578
Number of extensions: 60023
Number of successful extensions: 143
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 17
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)