RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12170
         (73 letters)



>gnl|CDD|233879 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
           sucrose phosphate phosphatase, plant.  Members of this
           family are sucrose-phosphate synthases of plants. This
           enzyme is known to exist in multigene families in
           several species of both monocots and dicots. The
           N-terminal domain is the glucosyltransferase domain.
           Members of this family also have a variable linker
           region and a C-terminal domain that resembles sucrose
           phosphate phosphatase (SPP) (EC 3.1.3.24) (see
           TIGR01485), the next and final enzyme of sucrose
           biosynthesis. The SPP-like domain likely serves a
           binding and not a catalytic function, as the reported
           SPP is always encoded by a distinct protein.
          Length = 1050

 Score = 26.3 bits (58), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 31  LEDLLKQTKFTRQEIRVMYR 50
           LE LLKQ + +++EI   Y+
Sbjct: 348 LEQLLKQGRMSKEEINSTYK 367


>gnl|CDD|226450 COG3941, COG3941, Mu-like prophage protein [General function
           prediction only].
          Length = 633

 Score = 26.4 bits (58), Expect = 1.4
 Identities = 10/40 (25%), Positives = 15/40 (37%)

Query: 12  VVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRG 51
           V A    + +      P  L  L  + K  R  IR ++ G
Sbjct: 191 VPAKGRLADEAGAGRTPAELSKLGSKGKLGRDAIRALFAG 230


>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
          Length = 644

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 32 EDLLKQTKFTRQEIRVMYRGFKQFLTFIGLNHPTLKDN 69
          +D +++ +   +EI V  +   ++ T+I +N P L DN
Sbjct: 43 QDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDN 80


>gnl|CDD|224073 COG1151, COG1151, 6Fe-6S prismane cluster-containing protein
           [Energy production and conversion].
          Length = 576

 Score = 25.8 bits (57), Expect = 2.0
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 11/42 (26%)

Query: 30  ALEDLLKQTKFT-RQEIRVM----------YRGFKQFLTFIG 60
            LE+LL+Q +    + I V           Y   +++  F+G
Sbjct: 261 DLEELLEQAEGAGAKGINVYTHSEMLPAHGYPELRKYKHFVG 302


>gnl|CDD|163646 cd07403, MPP_TTHA0053, Thermus thermophilus TTHA0053 and related
          proteins, metallophosphatase domain.  TTHA0053 is an
          uncharacterized Thermus thermophilus protein with a
          domain that belongs to the metallophosphatase (MPP)
          superfamily.  MPPs are functionally diverse, but all
          share a conserved domain with an active site consisting
          of two metal ions (usually manganese, iron, or zinc)
          coordinated with octahedral geometry by a cage of
          histidine, aspartate, and asparagine residues. The MPP
          superfamily includes: Mre11/SbcD-like exonucleases,
          Dbr1-like RNA lariat debranching enzymes, YfcE-like
          phosphodiesterases, purple acid phosphatases (PAPs),
          YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
          acid sphingomyelinases (ASMases).  The conserved domain
          is a double beta-sheet sandwich with a di-metal active
          site made up of residues located at the C-terminal side
          of the sheets. This domain is thought to allow for
          productive metal coordination.
          Length = 129

 Score = 25.3 bits (56), Expect = 2.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 49 YRGFKQFLTFIGLNHPTL 66
          +RGF+ FL FI    P L
Sbjct: 77 HRGFEAFLDFIDRFRPKL 94


>gnl|CDD|136027 PRK06743, PRK06743, flagellar motor protein MotP; Reviewed.
          Length = 254

 Score = 25.7 bits (56), Expect = 2.4
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 6   ESDVEEVVAFEIESSKHVQKYRPIALEDLLKQ--TKFTRQEIRVMYRGFKQ 54
           E D+E++    ++ SK  +K+  ++LE   +Q    F ++ IR+M  G+ +
Sbjct: 68  EEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDE 118


>gnl|CDD|238323 cd00578, L-fuc_L-ara-isomerases, L-fucose isomerase (FucIase) and
           L-arabinose isomerase (AI) family; composed of FucIase,
           AI and similar proteins. FucIase converts L-fucose, an
           aldohexose, to its ketose form, which prepares it for
           aldol cleavage (similar to the isomerization of glucose
           in glycolysis). L-fucose (or 6-deoxy-L-galactose) is
           found in various oligo- and polysaccharides in mammals,
           bacteria and plants. AI catalyzes the isomerization of
           L-arabinose to L-ribulose, the first reaction in its
           conversion to D-xylulose-5-phosphate, an intermediate in
           the pentose phosphate pathway, which allows L-arabinose
           to be used as a carbon source. AI can also convert
           D-galactose to D-tagatose at elevated temperatures in
           the presence of divalent metal ions. D-tagatose, rarely
           found in nature, is of commercial interest as a
           low-calorie sugar substitute.
          Length = 452

 Score = 25.3 bits (56), Expect = 2.6
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 1   MASDDESDVEEVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQFLT 57
           +    + +VEE++    E+   V   + +  E L K  +        +Y   ++ L 
Sbjct: 203 IDEVSDEEVEELLEEYEENYDVVLDAKGLTDESLRKAAR--------LYLALRRLLE 251


>gnl|CDD|223924 COG0855, Ppk, Polyphosphate kinase [Inorganic ion transport and
           metabolism].
          Length = 696

 Score = 25.3 bits (56), Expect = 2.9
 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 11/62 (17%)

Query: 11  EVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVM----YRGFKQFLTFIGLNHPTL 66
           E V  EI+         P AL + L   +    E  V         K       +  P L
Sbjct: 262 EPVRLEIQDDM------PEALREFL-LQELGLSENDVYVVGGPLNLKDLWEIPNVGRPDL 314

Query: 67  KD 68
           K 
Sbjct: 315 KY 316


>gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology
           domain of Sorting Nexin 22.  The PX domain is a
           phosphoinositide (PI) binding module present in many
           proteins with diverse functions. Sorting nexins (SNXs)
           make up the largest group among PX domain containing
           proteins. They are involved in regulating membrane
           traffic and protein sorting in the endosomal system. The
           PX domain of SNXs binds PIs and targets the protein to
           PI-enriched membranes. SNXs differ from each other in
           PI-binding specificity and affinity, and the presence of
           other protein-protein interaction domains, which help
           determine subcellular localization and specific function
           in the endocytic pathway. SNX22 may be involved in
           recruiting other proteins to the membrane via
           protein-protein and protein-ligand interaction. The
           biological function of SNX22 is not yet known.
          Length = 110

 Score = 24.9 bits (55), Expect = 3.5
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 14/53 (26%)

Query: 20  SKHVQKYRP-------IALEDLLKQTKFTRQEIRVMYRGFKQFLTFIGLNHPT 65
            K V+ + P         LE  L Q      E+       KQ L F+G+ H  
Sbjct: 60  PKRVRNWNPKVLEQRRQGLEAYL-QGLLKINELP------KQLLDFLGVRHFP 105


>gnl|CDD|238895 cd01914, HCP, Hybrid cluster protein (HCP), formerly known as
           prismane, is thought to play a role in nitrogen
           metabolism but its specific function is unknown. HCP has
           three structural domains, an N-terminal alpha-helical
           domain, and two similar domains comprising a central
           beta-sheet flanked by alpha-helices. HCP contains two
           iron-sulfur clusters, one of which is a [Fe4-S4] cubane
           cluster similar to that of carbon monoxide dehydrogenase
           (CODH).  The second cluster, referred to as the hybrid
           cluster, is a hybrid [Fe4-S2-O2] center located at the
           interface of the three domains. Although the hybrid
           cluster is buried within the protein, it is accessible
           through a large hydrophobic cavity.
          Length = 423

 Score = 24.9 bits (55), Expect = 4.0
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 14/42 (33%)

Query: 30  ALEDLLKQTK------FTRQEIRVM-----YRGFKQFLTFIG 60
            LE+LL+QT+      +T  E   M     Y   K++   +G
Sbjct: 129 DLEELLEQTEGTGVDVYTHGE---MLPAHGYPELKKYPHLVG 167


>gnl|CDD|238596 cd01191, INT_phiCTX_C, phiCTX phage and phage-related integrases,
           site-specific recombinases, DNA breaking-rejoining
           enzymes, C-terminal catalytic domain. This CD includes
           various phage and bacterial integrases, including those
           similar to phage integrases: Bordetella and Pseudomonas
           phiCTX;  E. coli  Rac, Qin, and Shiga toxin 2 933W; and
           Salmonella typhimurium LT2 Gifsy-2 and Fels-1; and a
           putative pore-forming cytotoxin integrase from Vibrio
           parahaemolyticus O3:K6.
          Length = 196

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 28  PIALEDLLKQTKFTR----QEIRVMYRGF----KQFLTFIGLN 62
           P AL  L +Q K TR     +I V+ R +    KQ  TF+  +
Sbjct: 81  PPALAALKEQAKLTRLSRPHQITVLEREYGRTEKQKGTFVFHD 123


>gnl|CDD|224620 COG1706, FlgI, Flagellar basal-body P-ring protein [Cell motility
          and secretion].
          Length = 365

 Score = 24.6 bits (54), Expect = 5.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 33 DLLKQTKFTRQEIRVMYRGF 52
          D L Q+ FT+Q I  M    
Sbjct: 53 DQLTQSPFTKQSINNMLEQL 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,693,537
Number of extensions: 281710
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 23
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)