RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12170
(73 letters)
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 37.9 bits (88), Expect = 5e-05
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 26 YRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
+RP LE L QT FT++E++V+YRGFK
Sbjct: 1 HRPEGLEQLEAQTNFTKRELQVLYRGFKN 29
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 37.5 bits (87), Expect = 8e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 21 KHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K K RP ++DLL+ T FT EI+ Y+GF +
Sbjct: 3 KQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLR 36
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION
transport, ionic channel, membrane, PO potassium
channel, potassium transport, transport; 3.00A {Mus
musculus} PDB: 2e6w_A
Length = 229
Score = 36.4 bits (84), Expect = 2e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 18 ESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
E ++RP ALE L Q+KFT++E++++YRGFK
Sbjct: 39 ELEMATVRHRPEALELLEAQSKFTKKELQILYRGFKN 75
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 36.4 bits (84), Expect = 2e-04
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 25 KYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K +P +E+L ++T FT +E++ Y+GF +
Sbjct: 7 KLKPEVVEELTRKTYFTEKEVQQWYKGFIK 36
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on
protein STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 36.1 bits (83), Expect = 3e-04
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 20 SKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
+ LE+L TKF+ +E+ Y+ F +
Sbjct: 10 NSKSGALSKEILEELQLNTKFSEEELCSWYQSFLK 44
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein;
2.20A {Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 35.9 bits (83), Expect = 3e-04
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 20 SKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
S+ R LE++ K+T F+ +I +Y F
Sbjct: 3 SRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSL 38
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal
binding protein; HET: MYR; NMR {Schizosaccharomyces
pombe}
Length = 190
Score = 35.6 bits (82), Expect = 3e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 24 QKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K L+DL++ T+F ++E++ Y+GF +
Sbjct: 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFK 36
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR
{Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A
1y1a_A*
Length = 183
Score = 35.1 bits (81), Expect = 5e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQF 55
L + T T+QEI + +R F +
Sbjct: 5 LAEYQDLTFLTKQEILLAHRRFCEL 29
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 35.2 bits (81), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 21 KHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K L L + T F R+EI+ ++GF +
Sbjct: 3 AKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLR 36
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens}
SCOP: a.39.1.5
Length = 224
Score = 35.0 bits (80), Expect = 6e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 14 AFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
E E + +RP LE L QT FT++E++V+YRGFK
Sbjct: 22 KIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKN 62
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 35.0 bits (80), Expect = 6e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 18 ESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
E +++P L+ L QTKFT++E++ +YRGFK
Sbjct: 66 ELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKN 102
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 34.8 bits (80), Expect = 7e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 25 KYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
+ L + T T+QEI + +R F +
Sbjct: 30 RLSKELLAEYQDLTFLTKQEILLAHRRFCEL 60
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 34.8 bits (80), Expect = 9e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 24 QKYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
Q E L + T F+ EI +Y FK+
Sbjct: 26 QSGGLGDPELLARDTVFSVSEIEALYELFKKI 57
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound
to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A
{Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 24 QKYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
+ E L T FT +E+ +Y FK+
Sbjct: 15 RPPGYEDPELLASVTPFTVEEVEALYELFKKL 46
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 32.5 bits (74), Expect = 0.005
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 24 QKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
Q++ E+ +++ Y+ F +
Sbjct: 3 QQFSWEEAEENGAVGAADAAQLQEWYKKFLE 33
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 32.1 bits (73), Expect = 0.007
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 26 YRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
+ Q QE V YR F
Sbjct: 2 HMGNGKSIAGDQKAVPTQETHVWYRTFMM 30
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 29.7 bits (67), Expect = 0.041
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 32 EDLLKQTKFTRQEIRVMYRGFKQ 54
D + + E Y+ F
Sbjct: 3 MDSKAVEELSATECHQWYKKFMT 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.080
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 18/74 (24%)
Query: 2 ASDDESDVEEVVAFEI-ESSKHVQKYRPIALEDLLKQTKFTRQ------EI---RVM-YR 50
D E + EI E S + LL T+FT Q E + +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSE---KGLLSATQFT-QPALTLMEKAAFEDLKSK 1750
Query: 51 GFKQFL-TFIGLNH 63
G TF G H
Sbjct: 1751 GLIPADATFAG--H 1762
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 27.8 bits (61), Expect = 0.25
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 14 AFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQFLTF 58
A++ + V + +E + + E+RV Y G F F
Sbjct: 251 AYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAF 295
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 27.4 bits (61), Expect = 0.28
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQF 55
+ + ++T F++ + ++ F+
Sbjct: 14 GDSIRRETGFSQASLLRLHHRFRAL 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 0.85
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 4 DDESDVEEVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ------FLT 57
+ + + AF + S K + R + D L T + L
Sbjct: 251 LNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 58 FIGLNHPTL 66
++ L
Sbjct: 310 YLDCRPQDL 318
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 24.5 bits (54), Expect = 4.1
Identities = 4/51 (7%), Positives = 20/51 (39%)
Query: 5 DESDVEEVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
+ ++ ++ +FE +V + ++++ + + + + F
Sbjct: 457 ADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSF 507
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin,
2-isocyano-6,7-dihydroxycoum transferase; HET: PGE;
2.10A {Pseudomonas aeruginosa}
Length = 330
Score = 23.4 bits (50), Expect = 9.2
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 35 LKQTKFTRQEIRVMYRGFKQFLTFIGLNHPTLKDNT 70
+++T +E ++YR +FL GL T
Sbjct: 185 IRETLLASEEGLLLYRAITRFLYEDGLTPDYQGSKT 220
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 23.3 bits (50), Expect = 9.7
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 23 VQKYRPIALEDLLKQTKFTRQ 43
KY P L+ + +
Sbjct: 30 TVKYAPTNLQQVCGNKGSVMK 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.372
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,071,692
Number of extensions: 50448
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 32
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)