RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12170
(73 letters)
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId:
9913]}
Length = 181
Score = 35.2 bits (80), Expect = 2e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 25 KYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K RP ++DLL+ T FT EI+ Y+GF +
Sbjct: 3 KLRPEVMQDLLESTDFTEHEIQEWYKGFLR 32
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 34.8 bits (79), Expect = 2e-04
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQ 54
LE L QT FT++E++V+YRGFK
Sbjct: 1 LEQLEAQTNFTKRELQVLYRGFKN 24
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 34.8 bits (79), Expect = 3e-04
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 25 KYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K +P +E+L ++T FT +E++ Y+GF +
Sbjct: 4 KLKPEVVEELTRKTYFTEKEVQQWYKGFIK 33
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 190
Score = 34.0 bits (77), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 21 KHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
K L L + T F R+EI+ ++GF +
Sbjct: 3 AKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLR 36
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 33.7 bits (76), Expect = 8e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQ 54
LE+L TKFT +E+ Y+ F +
Sbjct: 13 LEELQLNTKFTEEELSSWYQSFLK 36
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 32.4 bits (73), Expect = 0.002
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQFLT 57
L + T T+QEI + +R F + L
Sbjct: 2 LAEYQDLTFLTKQEILLAHRRFCELLP 28
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 32.2 bits (72), Expect = 0.002
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 31 LEDLLKQTKFTRQEIRVMYRGFKQF 55
E L + T F+ EI +Y FK+
Sbjct: 2 PELLARDTVFSVSEIEALYELFKKI 26
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 31.9 bits (72), Expect = 0.002
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 25 KYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
P L K +++ +++ + + F+
Sbjct: 7 LISPSDFAQLQKYMEYSTKKVSDVLKLFED 36
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2,
GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}
Length = 189
Score = 29.1 bits (64), Expect = 0.029
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 24 QKYRPIALEDLLKQTKFTRQEIRVMYRGFKQ 54
Q++ E+ +++ Y+ F +
Sbjct: 2 QQFSWEEAEENGAVGAADAAQLQEWYKKFLE 32
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 343
Score = 27.9 bits (62), Expect = 0.077
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 14 AFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQF 55
A++ + V + +E + + E+RV Y G F
Sbjct: 251 AYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSF 292
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 24.7 bits (52), Expect = 1.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 38 TKFTRQEIRVMYRGFKQF 55
+ F EI+ + + FK+
Sbjct: 8 SHFDADEIKRLGKRFKKL 25
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 24.4 bits (51), Expect = 1.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 23 VQKYRPIALEDLLKQTKFTRQ 43
V KYRP +L L + T
Sbjct: 2 VDKYRPKSLNALSHNEELTNF 22
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 208
Score = 24.1 bits (52), Expect = 1.9
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 11 EVVAFEIESSKHVQKYRPIALEDLLKQTKFTRQEIRV---MYRGFKQFLTFIGLNHPTLK 67
E V F + +E L ++ +R + V Y FK F+ F + L
Sbjct: 152 EPVRFVYQRDMP-----NALVEVLREKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLV 206
Query: 68 D 68
+
Sbjct: 207 N 207
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 23.9 bits (50), Expect = 2.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 23 VQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQFLTFIG 60
V+KYRP L+++ Q + + + G L F G
Sbjct: 5 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYG 42
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 23.4 bits (49), Expect = 2.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 23 VQKYRPIALEDLLKQTKFTRQ 43
V+KYRP L D++ + +
Sbjct: 6 VEKYRPQVLSDIVGNKETIDR 26
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 23.5 bits (49), Expect = 2.9
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 23 VQKYRPIALEDLLKQTKFTRQEIRVMYRGFKQFLTFIG 60
V+KYRP L+++ Q + + + F G
Sbjct: 3 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYG 40
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 23.6 bits (49), Expect = 3.3
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 23 VQKYRPIALEDLLKQTKFTRQ 43
KY P L+ + +
Sbjct: 5 TVKYAPTNLQQVCGNKGSVMK 25
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 23.4 bits (49), Expect = 3.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 23 VQKYRPIALEDLLKQTKFTRQ 43
V+KYRP L+D++ Q ++
Sbjct: 15 VEKYRPQRLDDIVGQEHIVKR 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.372
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 257,767
Number of extensions: 9746
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 21
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)