BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12172
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 29 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLG 75
Y+F TK+L+TP+N+ ++NLAFSDF FS+ P M ++CF + W G
Sbjct: 57 YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFG 104
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 29 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLG 75
Y+F TK+L+TP+N+ ++NLAFSDF FS+ P M ++CF + W G
Sbjct: 56 YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFG 103
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 4 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTM 63
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 180 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239
Query: 64 VLNCFYETWTLGKFCLRF 81
+ +TWT G F F
Sbjct: 240 AAHILTKTWTFGNFWCEF 257
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates
Crystallization Of A G Protein Coupled Receptor
Length = 309
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 1 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 60
Query: 62 TMVLNCFYETWTLGKFCLRF 81
+ +TWT G F F
Sbjct: 61 FGAAHILTKTWTFGNFWCEF 80
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 14 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM 59
+C+G ++GN +V+Y+ L ++T +NI + NLA +D ++ ++
Sbjct: 135 VCVG--GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTL 178
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 7 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 66
Query: 63 MVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 67 GAAHILMKMWTFGNFWCEF 85
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 31 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 90
Query: 63 MVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 91 GAAHILMKMWTFGNFWCEF 109
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 30 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 89
Query: 63 MVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 90 GAAHILMKMWTFGNFWCEF 108
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 37 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 96
Query: 62 TMVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 97 FGAAHILMKMWTFGNFWCEF 116
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 11 LTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYE 70
L+ ICL T+ + N +V+Y + L T N+ +V+L+ +D + + P +L
Sbjct: 15 LSTICLVTVGL--NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS 72
Query: 71 TWTLGK 76
W+LG+
Sbjct: 73 KWSLGR 78
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 37 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 96
Query: 62 TMVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 97 FGAAHILMKMWTFGNFWCEF 116
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 36 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 95
Query: 62 TMVLNCFYETWTLGKFCLRF 81
+ + WT G F F
Sbjct: 96 FGAAHILMKMWTFGNFWCEF 115
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 12 TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYET 71
+++C+ + + GN +V+Y+ + ++T +NI + NLA +D + S P +N T
Sbjct: 25 SIVCV--VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGT 81
Query: 72 WTLGKFCLRFLV 83
W G + ++
Sbjct: 82 WPFGNILCKIVI 93
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of
Ground-State Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of
Ground-State Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of
Ground-State Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A
Hexagonal Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled
Receptor Opsin In Complex With A C-terminal Peptide
Derived From The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active
E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact
Peptide
Length = 349
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
P + L M L + N + +Y+ + K LRTP N +++NLA +D M+F
Sbjct: 34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 5 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 64
Query: 62 TMVLNCFYETWTLGKFCLRF 81
+ WT G F F
Sbjct: 65 FGAACILMKMWTFGNFWCEF 84
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 18 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKF 77
+ ++GN +V++ + L+T +NI + NLA +D + S P ETW G+
Sbjct: 26 AVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGEL 84
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
P Y AL + L + GNG+V L + L+T +N LVV+LA +D + + P
Sbjct: 36 RPHAYYALSYCALILAIV--FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93
Query: 62 TMV-LNCFYETWTLGKFC 78
+V L W + C
Sbjct: 94 WVVYLEVTGGVWNFSRIC 111
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 19 MSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM 59
+ +VGN +V+++ + ++T +NI + NLA +D + +M
Sbjct: 35 VGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTM 75
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 29 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFY---ETWTLGKFCLRF 81
+I L K +RT +N +VNLAF++ M A V+N Y W G F +F
Sbjct: 55 WIILAHKRMRTVTNYFLVNLAFAEASM---AAFNTVVNFTYAVHNEWYYGLFYCKF 107
>pdb|2LSN|A Chain A, Solution Structure Of Pfv Rnase H Domain
Length = 165
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAF 50
YQ L I LG + I F C K L+ P +LV+ +F
Sbjct: 41 YQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITDSF 85
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 16 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM 55
L ++++GN +V+ F K L+T +N +++LA +D +
Sbjct: 22 LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII 61
>pdb|2V5O|A Chain A, Structure Of Human Igf2r Domains 11-14
Length = 627
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 GTMSMVGNGIVVYIFLCTKNLRTP 40
G+ S+V NG+ YI LC K + P
Sbjct: 506 GSWSLVHNGVSYYINLCQKIYKGP 529
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril
In Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 14 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM 55
+ + ++++GN +V + NL+ +N VV+LA +D +
Sbjct: 39 LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.336 0.144 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,232,659
Number of Sequences: 62578
Number of extensions: 67554
Number of successful extensions: 181
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 33
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)