BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12172
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35362|OPSD_SPHSP Rhodopsin OS=Sphodromantis sp. PE=2 SV=1
Length = 376
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG + CLG +S+VGNG+V+YIF TK LRTPSN+LVVNLAFSDF MM SM+
Sbjct: 47 MNPLWHGLLGFVIGCLGFVSVVGNGMVIYIFSTTKGLRTPSNLLVVNLAFSDFLMMLSMS 106
Query: 61 PTMVLNCFYETWTLGKF 77
P MV+NC+YETW LG F
Sbjct: 107 PPMVINCYYETWVLGPF 123
>sp|Q95YI3|OPSCE_BOMMO Ceropsin OS=Bombyx mori GN=Bcop PE=1 SV=1
Length = 381
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 63/78 (80%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG T+ LG +SM+GNG+V+YIF+ TKNL+TPSN+LVVNLAFSDF MM +M+
Sbjct: 53 MNPLWHALLGFTIGVLGFISMMGNGMVIYIFMTTKNLKTPSNLLVVNLAFSDFLMMCAMS 112
Query: 61 PTMVLNCFYETWTLGKFC 78
P MV+NC+ ETW G F
Sbjct: 113 PAMVINCYNETWVFGPFA 130
>sp|O02464|OPS1_MANSE Opsin-1 OS=Manduca sexta GN=OP1 PE=1 SV=2
Length = 377
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 63/78 (80%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG T+ LG +S+ GNG+V+YIF+ TK+L+TPSN+LVVNLAFSDF MM +M+
Sbjct: 49 MNPLWHALLGFTIGVLGFVSISGNGMVIYIFMSTKSLKTPSNLLVVNLAFSDFLMMCAMS 108
Query: 61 PTMVLNCFYETWTLGKFC 78
P MV+NC+YETW G F
Sbjct: 109 PAMVVNCYYETWVWGPFA 126
>sp|Q94741|OPS1_SCHGR Opsin-1 OS=Schistocerca gregaria GN=Lo1 PE=2 SV=1
Length = 381
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG + LG +S++GNG+V+YIF TK+LRTPSN+LVVNLAFSDF MMF+M+
Sbjct: 49 MNPLWHGLLGFVIGVLGVISVIGNGMVIYIFSTTKSLRTPSNLLVVNLAFSDFLMMFTMS 108
Query: 61 PTMVLNCFYETWTLGKF 77
M +NC+YETW LG F
Sbjct: 109 APMGINCYYETWVLGPF 125
>sp|Q17296|OPSD_CATBO Rhodopsin OS=Cataglyphis bombycina PE=2 SV=1
Length = 378
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 61/75 (81%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG + LG +S++GNG+V+YIF TK+LRTPSN+LV+NLA SDF MM SM+
Sbjct: 49 MNPLWHAILGFVIGILGMISVIGNGMVIYIFTTTKSLRTPSNLLVINLAISDFLMMLSMS 108
Query: 61 PTMVLNCFYETWTLG 75
P MV+NC+YETW LG
Sbjct: 109 PAMVINCYYETWVLG 123
>sp|P35361|OPSO_LIMPO Ocellar opsin OS=Limulus polyphemus PE=1 SV=1
Length = 376
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLWY LG+ MI LG + ++GNG+V+Y+ + TK+LRTP+N+LVVNLAFSDFCMM M
Sbjct: 42 MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFMM 101
Query: 61 PTMVLNCFYETWTLGKF 77
PTM NCF ETW LG F
Sbjct: 102 PTMASNCFAETWILGPF 118
>sp|P35360|OPSL_LIMPO Lateral eye opsin OS=Limulus polyphemus PE=1 SV=1
Length = 376
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLWY LG+ MI LG + ++GNG+V+Y+ + TK+LRTP+N+LVVNLAFSDFCMM M
Sbjct: 42 MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFMM 101
Query: 61 PTMVLNCFYETWTLGKF 77
PTM NCF ETW LG F
Sbjct: 102 PTMTSNCFAETWILGPF 118
>sp|Q17292|OPSD_CAMAT Rhodopsin OS=Camponotus atriceps PE=2 SV=1
Length = 378
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+PLW+ LG + LG +S++GNG+V+YIF TK+LRTPSN+LVVNLA SDF MM M+
Sbjct: 49 MNPLWHALLGFVIGVLGVISVIGNGMVIYIFTTTKSLRTPSNLLVVNLAISDFLMMLCMS 108
Query: 61 PTMVLNCFYETWTLGK-FC 78
P MV+NC+YETW LG FC
Sbjct: 109 PAMVINCYYETWVLGPLFC 127
>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1
Length = 377
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
++P+W+ LG + LG +S +GNG+VVYIFL TK+LRTPSN+ V+NLA S+F MMF M+
Sbjct: 47 LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106
Query: 61 PTMVLNCFYETWTLGK-FC 78
P MV+NC+YETW LG FC
Sbjct: 107 PPMVINCYYETWVLGPLFC 125
>sp|O01668|OPS6_DROME Opsin Rh6 OS=Drosophila melanogaster GN=Rh6 PE=2 SV=1
Length = 369
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 57/77 (74%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
+ P+W+ +G + LGTMS+ GN IV+YIF +K LRTPSN+ VVNLAFSDF MMF+M
Sbjct: 42 LEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMF 101
Query: 61 PTMVLNCFYETWTLGKF 77
P +VLN FY TW +G F
Sbjct: 102 PPVVLNGFYGTWIMGPF 118
>sp|P08099|OPS2_DROME Opsin Rh2 OS=Drosophila melanogaster GN=Rh2 PE=1 SV=1
Length = 381
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 57/75 (76%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M P+ + LGL + + +S GNG+VVYIF TK+LRTP+N+LV+NLAFSDFCMM S +
Sbjct: 52 MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQS 111
Query: 61 PTMVLNCFYETWTLG 75
P M++N +YETW LG
Sbjct: 112 PVMIINFYYETWVLG 126
>sp|P28679|OPS2_DROPS Opsin Rh2 OS=Drosophila pseudoobscura pseudoobscura GN=Rh2 PE=1
SV=3
Length = 381
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M P + LGL + + +S GNG+VVYIF TK+LRTP+N+LV+NLAFSDFCMM S +
Sbjct: 52 MDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQS 111
Query: 61 PTMVLNCFYETWTLG 75
P M++N +YETW LG
Sbjct: 112 PVMIINFYYETWVLG 126
>sp|P22269|OPS1_CALVI Opsin Rh1 OS=Calliphora vicina GN=NINAE PE=1 SV=1
Length = 371
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M P W + L M+ + T+S GNG+V+YIF TK+LRTP+N+LV+NLA SDF +M +
Sbjct: 43 MEPKWAKFLAAYMVLIATISWCGNGVVIYIFSTTKSLRTPANLLVINLAISDFGIMITNT 102
Query: 61 PTMVLNCFYETWTLG 75
P M +N FYETW LG
Sbjct: 103 PMMGINLFYETWVLG 117
>sp|P28678|OPS1_DROPS Opsin Rh1 OS=Drosophila pseudoobscura pseudoobscura GN=ninaE PE=1
SV=4
Length = 373
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M P+W + L MI +G +S GNG+V+YIF TK+LRTP+N+LV+NLA SDF +M +
Sbjct: 45 MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNT 104
Query: 61 PTMVLNCFYETWTLG 75
P M +N ++ETW LG
Sbjct: 105 PMMGINLYFETWVLG 119
>sp|P06002|OPS1_DROME Opsin Rh1 OS=Drosophila melanogaster GN=ninaE PE=1 SV=1
Length = 373
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M P+W + L MI +G +S GNG+V+YIF TK+LRTP+N+LV+NLA SDF +M +
Sbjct: 45 MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNT 104
Query: 61 PTMVLNCFYETWTLG 75
P M +N ++ETW LG
Sbjct: 105 PMMGINLYFETWVLG 119
>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4 PE=1 SV=1
Length = 706
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
PL + +G + C+G M GN +VVY F+ +K LRTP+N ++NLA SDF M + P
Sbjct: 82 PLAHYIVGTAVFCIGCCGMFGNAVVVYSFIKSKGLRTPANFFIINLALSDFLMNLTNMPI 141
Query: 63 MVLNCFYETWTLGKF 77
+N ++ W L F
Sbjct: 142 FAVNSAFQRWLLSDF 156
>sp|Q25158|OPSC2_HEMSA Compound eye opsin BCRH2 OS=Hemigrapsus sanguineus PE=2 SV=1
Length = 377
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
++P+W+ LG+ + LGT+S+ GNG+V+Y+F + LRTP+NILVVNLA SD M+ +
Sbjct: 49 VNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTNV 108
Query: 61 PTMVLNCF 68
P NCF
Sbjct: 109 PFFTYNCF 116
>sp|O18481|OPSD_ORCAU Rhodopsin (Fragment) OS=Orconectes australis GN=RHO PE=3 SV=1
Length = 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPIMYPLLLVFMLITGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMITCYYHTWTLGATFC 92
>sp|O16017|OPSD_CAMLU Rhodopsin (Fragment) OS=Cambarus ludovicianus GN=RHO PE=3 SV=1
Length = 301
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLVFMLITGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMITCYYHTWTLGATFC 92
>sp|O18315|OPSD_CAMMA Rhodopsin (Fragment) OS=Cambarus maculatus GN=RHO PE=3 SV=1
Length = 300
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLVFMLITGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMVTCYYHTWTLGATFC 92
>sp|P35356|OPSD_PROCL Rhodopsin OS=Procambarus clarkii GN=RHO PE=2 SV=1
Length = 376
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 1 MHPLWYQALGLT----------MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAF 50
+HP WYQ + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA
Sbjct: 38 IHPHWYQYPPMNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAM 97
Query: 51 SDFCMMFSMAPTMVLNCFYETWTLGK-FC 78
SDF MMF+M P M++ C+Y TWTLG FC
Sbjct: 98 SDFLMMFTMFPPMMVTCYYHTWTLGPTFC 126
>sp|O16020|OPSD_PROML Rhodopsin (Fragment) OS=Procambarus milleri GN=RHO PE=3 SV=1
Length = 301
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMVTCYYHTWTLGPTFC 92
>sp|O18485|OPSD_PROOR Rhodopsin (Fragment) OS=Procambarus orcinus GN=RHO PE=3 SV=1
Length = 298
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 11 MNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 70
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 71 PPMMVTCYYHTWTLGPTFC 89
>sp|O16019|OPSD_ORCVI Rhodopsin (Fragment) OS=Orconectes virilis GN=RHO PE=3 SV=1
Length = 301
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMVTCYYHTWTLGPTFC 92
>sp|O18312|OPSD_CAMHU Rhodopsin (Fragment) OS=Cambarus hubrichti GN=RHO PE=3 SV=1
Length = 301
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMVTCYYHTWTLGPTFC 92
>sp|O18486|OPSD_PROSE Rhodopsin (Fragment) OS=Procambarus seminolae GN=RHO PE=3 SV=1
Length = 301
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M+ G + + GN + +++F+ TK+LRTP+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLIFMLFTGILCLAGNFVTIWVFMNTKSLRTPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMVTCYYHTWTLGPTFC 92
>sp|P04950|OPS3_DROME Opsin Rh3 OS=Drosophila melanogaster GN=Rh3 PE=1 SV=1
Length = 383
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG I MSM+GNG+V+++F K+LRTPSNILV+NLAF DF MM P + N F
Sbjct: 61 LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK-TPIFIYNSF 119
Query: 69 YETWTLG 75
++ + LG
Sbjct: 120 HQGYALG 126
>sp|Q25157|OPSC1_HEMSA Compound eye opsin BCRH1 OS=Hemigrapsus sanguineus PE=2 SV=1
Length = 377
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
++P+W+ LG+ + LG +S+ GNG+V+Y+++ ++ L+TP+N+L+VNLA SD M+ +
Sbjct: 49 VNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTNF 108
Query: 61 PTMVLNCF 68
P NCF
Sbjct: 109 PPFCYNCF 116
>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1
SV=3
Length = 382
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG I +SM+GNG+V+++F K+LRTPSNILV+NLAF DF MM P + N F
Sbjct: 60 LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK-TPIFIYNSF 118
Query: 69 YETWTLGK 76
++ + LG
Sbjct: 119 HQGYALGH 126
>sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 15/88 (17%)
Query: 1 MHPLW----------YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAF 50
+HP W Y +LG+ + G + VGNG+V+Y+F TK+L+TP+N+ ++NLAF
Sbjct: 19 IHPHWKQFDQVPAAVYYSLGIFIAICGIIGCVGNGVVIYLFTKTKSLQTPANMFIINLAF 78
Query: 51 SDFCMMFSMA---PTMVLNCFYETWTLG 75
SDF FS+ P M ++CF + W G
Sbjct: 79 SDFT--FSLVNGFPLMTISCFMKYWVFG 104
>sp|Q17094|OPSD_ALLSU Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1
Length = 439
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PT 62
Y +LG+ + G + GNGIV+Y+F TK+L+TP+N+ ++NLAFSDF FS+ P
Sbjct: 27 YYSLGIFIAICGIIGCAGNGIVIYLFTKTKSLQTPANMFIINLAFSDF--TFSLVNGFPM 84
Query: 63 MVLNCFYETWTLGK 76
M ++CF + W G+
Sbjct: 85 MTISCFLKHWVFGQ 98
>sp|Q8R456|OPN4_RAT Melanopsin OS=Rattus norvegicus GN=Opn4 PE=2 SV=1
Length = 474
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
+ LG ++ +G M+GN V+Y F + LRTP+N+L++NLA SDF M F+ AP
Sbjct: 70 HYTLGTVILLVGLTGMLGNLTVIYTFCRNRGLRTPANMLIINLAVSDFLMSFTQAPVFFA 129
Query: 66 NCFYETWTLGKFCLRF 81
+ Y+ W G+ +F
Sbjct: 130 SSLYKKWLFGETGCKF 145
>sp|O16018|OPSD_CAMSC Rhodopsin (Fragment) OS=Cambarellus shufeldtii GN=RHO PE=3 SV=1
Length = 301
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P+ Y L + M G + GN + +++F+ TK+LR+P+N+LVVNLA SDF MMF+M
Sbjct: 14 MNPMMYPLLLIFMFITGIPCLAGNFVTIWVFMTTKSLRSPANLLVVNLAMSDFLMMFTMF 73
Query: 61 PTMVLNCFYETWTLGK-FC 78
P M++ C+Y TWTLG FC
Sbjct: 74 PPMMITCYYHTWTLGPTFC 92
>sp|Q5XXP2|OPN4_PHOSU Melanopsin OS=Phodopus sungorus GN=OPN4 PE=2 SV=1
Length = 469
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG ++ +G M+GN V+Y F +++LRTP+N+L++NLA SDF M F+ AP +
Sbjct: 72 LGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMLIINLAVSDFLMSFTQAPVFFASSL 131
Query: 69 YETWTLGKFCLRF 81
Y+ W G+ F
Sbjct: 132 YKKWLFGETGCEF 144
>sp|Q804Q2|OPN4B_GADMO Melanopsin-B OS=Gadus morhua GN=opn4b PE=2 SV=1
Length = 615
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
+ + ++ +G + + GN +V+Y FLC K LRTP N ++NLA SDF M + +P +
Sbjct: 18 HYVIAFFVLIIGVVGVTGNALVMYAFLCNKKLRTPPNYFIMNLAVSDFLMAITQSPIFFI 77
Query: 66 NCFYETWTLGK 76
N ++ W G+
Sbjct: 78 NSLFKEWIFGE 88
>sp|Q9UHM6|OPN4_HUMAN Melanopsin OS=Homo sapiens GN=OPN4 PE=1 SV=1
Length = 478
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG ++ +G M+GN V+Y F +++LRTP+N+ ++NLA SDF M F+ AP +
Sbjct: 73 LGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSL 132
Query: 69 YETWTLGK 76
Y+ W G+
Sbjct: 133 YKQWLFGE 140
>sp|Q9QXZ9|OPN4_MOUSE Melanopsin OS=Mus musculus GN=Opn4 PE=1 SV=1
Length = 521
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
+ LG ++ +G M+GN V+Y F + LRTP+N+ ++NLA SDF M + AP
Sbjct: 69 HYTLGTVILLVGLTGMLGNLTVIYTFCRNRGLRTPANMFIINLAVSDFLMSVTQAPVFFA 128
Query: 66 NCFYETWTLGKFCLRF 81
+ Y+ W G+ F
Sbjct: 129 SSLYKKWLFGETGCEF 144
>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1
Length = 499
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---P 61
W+ +G+ + +G + ++GN VVYIF TK+LR+PSN+ VVNLA SD ++FS P
Sbjct: 50 WHYIIGVYITIVGLLGIMGNTTVVYIFSNTKSLRSPSNLFVVNLAVSD--LIFSAVNGFP 107
Query: 62 TMVLNCFYETWTLGK-FC 78
+ ++ F++ W G FC
Sbjct: 108 LLTVSSFHQKWIFGSLFC 125
>sp|Q4U4D2|OPN4_PODSI Melanopsin OS=Podarcis sicula GN=OPN4 PE=2 SV=2
Length = 475
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
+G ++ +G++ + GN +V+Y F K LRTP+N ++NLA SDF M + AP LN
Sbjct: 19 VGSCVLVIGSIGITGNLLVLYAFYSNKRLRTPANYFIMNLAASDFLMSATQAPICFLNSM 78
Query: 69 YETWTLGKFCLRFLV 83
+ W LG F V
Sbjct: 79 HTEWILGDIGCNFYV 93
>sp|Q5YKK9|OPN4_FELCA Melanopsin OS=Felis catus GN=OPN4 PE=2 SV=1
Length = 487
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG ++ +G ++GN +V+Y F ++ LRTP+N+ ++NLA SDF M F+ AP +
Sbjct: 68 LGTVILLVGLTGILGNLMVIYTFCRSRGLRTPANMFIINLAVSDFFMSFTQAPVFFASSL 127
Query: 69 YETWTLGKFCLRF 81
++ W G+ F
Sbjct: 128 HKRWLFGEAGCEF 140
>sp|Q2KNE5|OPN4A_DANRE Melanopsin-A OS=Danio rerio GN=opn4a PE=2 SV=3
Length = 593
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
+ +G ++ +G M+GN +V+Y F ++ LRTP+N+ ++NLA +DF M + AP
Sbjct: 75 HYTIGAVILTVGITGMLGNFLVIYAFSRSRTLRTPANLFIINLAITDFLMCATQAPIFFT 134
Query: 66 NCFYETWTLGK 76
++ W G+
Sbjct: 135 TSMHKRWIFGE 145
>sp|O16005|OPSD_SEPOF Rhodopsin OS=Sepia officinalis GN=RHO PE=2 SV=1
Length = 464
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 5/55 (9%)
Query: 24 NGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLG 75
NGIV+Y+F TK+L+TP+N+ ++NLAFSDF FS+ P M ++CF + W G
Sbjct: 52 NGIVIYLFTKTKSLQTPANMFIINLAFSDF--TFSLVNGFPLMTISCFIKKWVFG 104
>sp|P09241|OPSD_ENTDO Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1
Length = 455
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 1 MHPLW----------YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAF 50
+HP W Y ++G+ + +G + ++GNG+V+Y+F TK+L+TP+N+ ++NLA
Sbjct: 20 IHPHWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAM 79
Query: 51 SDFCM-MFSMAPTMVLNCFYETWTLGK 76
SD + P ++ F + W GK
Sbjct: 80 SDLSFSAINGFPLKTISAFMKKWIFGK 106
>sp|Q26495|OPS2_SCHGR Opsin-2 OS=Schistocerca gregaria GN=Lo2 PE=2 SV=1
Length = 380
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMV 64
W+ L L MS +GNGIV++I+ TK++RTPSN+ +VNLA D M+ M +V
Sbjct: 51 WHFGLAFVYFMLMCMSSLGNGIVLWIYATTKSIRTPSNMFIVNLALFDVLMLLEMPMLVV 110
Query: 65 LNCFYET---WTLG 75
+ FY+ W LG
Sbjct: 111 SSLFYQRPVGWELG 124
>sp|O57422|OPN4B_XENLA Melanopsin-B OS=Xenopus laevis GN=opn4b PE=2 SV=1
Length = 534
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
+G ++ +G++ ++GN +V+Y F K LRT N ++NLA SDF M + AP L+
Sbjct: 30 IGSFILIIGSVGIIGNMLVLYAFYRNKKLRTAPNYFIINLAISDFLMSATQAPVCFLSSL 89
Query: 69 YETWTLG 75
+ W LG
Sbjct: 90 HREWILG 96
>sp|P17646|OPS4_DROVI Opsin Rh4 OS=Drosophila virilis GN=Rh4 PE=3 SV=2
Length = 383
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG+ I L S VGNG+V++IF +K LRTPSN+ V+NLA DF M AP + N F
Sbjct: 61 LGVFYIFLFCASTVGNGMVIWIFSTSKALRTPSNMFVLNLAVFDFIMCLK-APIFIYNSF 119
Query: 69 YETWTLGK 76
+ + LG
Sbjct: 120 HRGFALGN 127
>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1
Length = 371
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
+P + L L I ++++GNG+V++IF K+LRTPSN+ VVNLA DF MM P
Sbjct: 44 NPSLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIK-TP 102
Query: 62 TMVLNCFYETWTLGK 76
+ N F + LG
Sbjct: 103 IFIYNSFNTGFALGN 117
>sp|Q6XL69|OPN4_RUTRU Melanopsin OS=Rutilus rutilus GN=opn4 PE=2 SV=1
Length = 500
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
+G ++ +G ++GN +V+Y+F ++ LRT N+ VVNLA +DF M + +P
Sbjct: 67 IGAVILIVGITGVIGNALVIYVFCRSRTLRTAGNMFVVNLAVADFFMSLTQSPVFFAASL 126
Query: 69 YETWTLGK 76
+ W G+
Sbjct: 127 HRRWIFGE 134
>sp|Q1JPS6|OPN4L_DANRE Melanopsin-like OS=Danio rerio GN=opn4l PE=2 SV=1
Length = 500
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
+G ++ +G ++GN +VVY+F ++ LRT N+ +VNLA +DF M + +P
Sbjct: 67 IGSVILIVGITGVIGNALVVYVFCRSRTLRTAGNMFIVNLAVADFLMSVTQSPVFFAASL 126
Query: 69 YETWTLGK 76
+ W G+
Sbjct: 127 HRRWVFGE 134
>sp|P08255|OPS4_DROME Opsin Rh4 OS=Drosophila melanogaster GN=Rh4 PE=1 SV=2
Length = 378
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
LG+ I L S VGNG+V++IF +K+LRTPSN+ V+NLA D M AP + N F
Sbjct: 57 LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK-APIFIYNSF 115
Query: 69 YETWTLGK 76
+ + LG
Sbjct: 116 HRGFALGN 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.144 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,083,011
Number of Sequences: 539616
Number of extensions: 860249
Number of successful extensions: 4243
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 3159
Number of HSP's gapped (non-prelim): 1189
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)