RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12172
(84 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs,
mainly the seven transmembrane helices, GCPRs of the
rhodopsin superfamily. All opsins bind a chromophore,
such as 11-cis-retinal. The function of most opsins
other than the photoisomerases is split into two steps:
light absorption and G-protein activation.
Photoisomerases, on the other hand, are not coupled to
G-proteins - they are thought to generate and supply
the chromophore that is used by visual opsins.
Length = 251
Score = 41.1 bits (97), Expect = 9e-06
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 29 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKF 77
+ L TK LRTP+NI ++NLA +D + ++ P + W G
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDA 49
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 30.8 bits (69), Expect = 0.047
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
M+P + + + I + + + GN ++ I C K ++T ++I + NLA SD ++F +
Sbjct: 93 MYPSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISD--LIFVID 149
Query: 61 PTMVLNCFYETWTLGKF 77
++ ++ W G F
Sbjct: 150 FPFIIYNEFDQWIFGDF 166
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srsx is a
solo family amongst the superfamilies of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 257
Score = 29.9 bits (68), Expect = 0.091
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 20 SMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCL 79
+ GN I++ + K LR+ + L+ +D + +VL F T C
Sbjct: 4 GIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLL-FTGTQLTRNECF 62
Query: 80 RFLV 83
++
Sbjct: 63 LIII 66
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srx is part
of the Srg superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 275
Score = 29.1 bits (66), Expect = 0.16
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 16 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
+ ++ N ++ YIFL +L+ IL N A S+ +
Sbjct: 3 ISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTI 45
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 28.2 bits (63), Expect = 0.39
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 19 MSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD--FCMMFSMAPTMVLNCFYETWTLGK 76
+VGN IV+Y+ L ++TP +I ++NLA SD F M P + W+ G+
Sbjct: 53 FGLVGNIIVIYV-LTKTKIKTPMDIYLLNLAVSDLLFVMTL---PFQIYYYILFQWSFGE 108
Query: 77 FCLRF 81
F +
Sbjct: 109 FACKI 113
>gnl|CDD|205507 pfam13327, T3SS_LEE_assoc, Type III secretion system subunit.
This is a family of bacterial putative type III
secretion apparatus proteins associated with the locus
of enterocyte effacement (LEE).
Length = 163
Score = 26.5 bits (59), Expect = 1.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 1 MHPLWYQALGLT 12
HPLW ALGL
Sbjct: 15 AHPLWLAALGLN 26
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 26.2 bits (58), Expect = 2.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 39 TPSNILVVNLAFSDFCMMFSMA 60
TP I+VV+ A+ +FC +S+A
Sbjct: 176 TPDAIVVVDEAYIEFCPEYSVA 197
>gnl|CDD|240305 PTZ00174, PTZ00174, phosphomannomutase; Provisional.
Length = 247
Score = 26.1 bits (58), Expect = 2.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 49 AFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL 82
FSD + FS+ + + F + W +CLR L
Sbjct: 164 EFSDLGLKFSIGGQISFDVFPKGWD-KTYCLRHL 196
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 25.2 bits (56), Expect = 4.2
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 37 LRTPSNILVVNLAF-SDFC-----MMFSMAPTMVLNC 67
LRT +++ LA +D + ++ C
Sbjct: 294 LRTGADV-AKALALGADAVGIGTAALIALGCIQARKC 329
>gnl|CDD|227482 COG5153, CVT17, Putative lipase essential for disintegration of
autophagic bodies inside the vacuole [Intracellular
trafficking and secretion / Lipid metabolism].
Length = 425
Score = 25.3 bits (55), Expect = 4.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 47 NLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR 84
NL FS C S T V +C+ +++ K CL +R
Sbjct: 216 NLLFSCCCARVSYLWTTVCDCYVKSYICDKECLEEEIR 253
>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport
and metabolism].
Length = 283
Score = 24.9 bits (55), Expect = 6.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 MHPLWYQALGLTMI 14
MH ++ALGL +
Sbjct: 24 MHNAAFRALGLDYV 37
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 24.5 bits (53), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 16/50 (32%)
Query: 28 VYIFLCTKNLRTPSNILVVNL-----AFSDFCMMFSMAPTMVLNCFYETW 72
+Y+ T L P+++L++NL FSD LN YE W
Sbjct: 865 LYMVKWTTLLIPPTSLLIINLVGVVAGFSD-----------ALNKGYEAW 903
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.336 0.144 0.491
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,104,160
Number of extensions: 312675
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 30
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.2 bits)