RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12172
         (84 letters)



>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
           chromophore, glycoprotein, lipoprotein, membrane,
           palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
           2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
          Length = 448

 Score = 98.1 bits (244), Expect = 5e-26
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM-FSM 59
           +    Y +LG+ +   G +   GNGIV+Y+F  TK+L+TP+N+ ++NLAFSDF     + 
Sbjct: 29  VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNG 88

Query: 60  APTMVLNCFYETWTLGKF 77
            P M ++CF + W  G  
Sbjct: 89  FPLMTISCFLKKWIFGFA 106


>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
           protei photoreceptor, signaling protein; HET: MAN NAG
           BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
           PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
           2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
           1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
           ...
          Length = 349

 Score = 93.6 bits (233), Expect = 8e-25
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
             P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+F   
Sbjct: 33  AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 92

Query: 61  PTMVLNCFYETWTLGKF 77
            T +    +  +  G  
Sbjct: 93  TTTLYTSLHGYFVFGPT 109


>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
           lipid receptor, multiple sclerosi autoimmunity,
           structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
           {Homo sapiens} PDB: 3v2w_A*
          Length = 520

 Score = 55.3 bits (132), Expect = 8e-11
 Identities = 12/77 (15%), Positives = 23/77 (29%)

Query: 3   PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
               +   +  I +    ++ N  V+     TK    P    + NLA SD     +    
Sbjct: 60  ENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTAN 119

Query: 63  MVLNCFYETWTLGKFCL 79
           ++L+             
Sbjct: 120 LLLSGATTYKLTPAQWF 136


>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
           receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
           2ksb_A
          Length = 364

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 2   HPLWYQAL---GLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
            P W   L     T+I +   S+VGN +V++I L  K +RT +N  +VNLAF++  M   
Sbjct: 27  QPAWQIVLWAAAYTVIVV--TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF 84

Query: 59  MAPTMVLNCFYETWTLGKF 77
                     +  W  G F
Sbjct: 85  NTVVNFTYAVHNEWYYGLF 103


>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
           lipidic cubic phase, lipidic, mesophase, cholesterol,
           membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
           sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
           3pds_A*
          Length = 500

 Score = 52.0 bits (124), Expect = 9e-10
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 2   HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
             +W   +G+ M  +    + GN +V+      + L+T +N  + +LA +D  M +  + 
Sbjct: 36  DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV- 94

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P    +   + WT G  +C
Sbjct: 95  PFGAAHILMKMWTFGNFWC 113


>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
           network, structural genomics, GPCR membrane 7TM NOP ORL1
           cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
           sapiens}
          Length = 434

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 13  MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETW 72
            +C+    ++GN +V+Y+ L    ++T +NI + NLA +D  ++ ++ P    +     W
Sbjct: 134 AVCV--GGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTL-PFQGTDILLGFW 190

Query: 73  TLGKF 77
             G  
Sbjct: 191 PFGNA 195


>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
          PSI-biology, membrane protein, GPCR NET GPCR,
          hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
          Length = 452

 Score = 50.5 bits (120), Expect = 4e-09
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSM 59
          M       L + +  +  +++  N +V+Y     + L T  N+ +V+L+ +D  +    M
Sbjct: 3  MASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVM 62

Query: 60 APTMVLNCFYETWTLGKF 77
           P  +L      W+LG+ 
Sbjct: 63 -PMNILYLLMSKWSLGRP 79


>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein;
          G protein-coupled receptor, GPCR, SI protein-antagonist
          complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB:
          4daj_A*
          Length = 467

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 3  PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMAP 61
                + L    L  ++++GN +V+      ++L+T +N  + +LA +D  + +FSM  
Sbjct: 20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSM-N 78

Query: 62 TMVLNCFYETWTLGKF 77
             L      W LG  
Sbjct: 79 LYTLYTVIGYWPLGPV 94


>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
          membrane protein, LCP, mesophase, structural genomics,
          PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
          Length = 488

 Score = 49.4 bits (117), Expect = 9e-09
 Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 2  HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
            +         + +  ++++GN +V +      NL+  +N  VV+LA +D  + + ++ 
Sbjct: 17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76

Query: 61 PTMVLNCFYETWTLGK-FCL 79
            + ++     +      CL
Sbjct: 77 FAITIS---TGFCAACHGCL 93


>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
           PSI-2, protein structure initiative, AC technologies
           center for gene to 3D structure; HET: ETQ MAL; 2.89A
           {Homo sapiens}
          Length = 481

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 2   HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
               +    L+   L    + GNG+V    L  + L+T +N LVV+LA +D  +    M 
Sbjct: 34  QARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93

Query: 61  PTMVLNCFYETWTLGKF 77
             + L      W   + 
Sbjct: 94  WVVYLEVTGGVWNFSRI 110


>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
           nanobody, G protein-coupled RE GPCR, signal
           transduction, G protein signaling; HET: P0G; 3.20A
           {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
          Length = 514

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
              +W   +G+ M  +    + GN +V+      + L+T +N  + +LA +D  M  ++ 
Sbjct: 177 ADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 236

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P    +   +TWT G  +C
Sbjct: 237 PFGAAHILTKTWTFGNFWC 255


>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
          receptor, 7 transmembrane receptor, signal
          protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
          {Mus musculus} PDB: 4ej4_A* 4djh_A*
          Length = 464

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 13 MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETW 72
          ++C+  + + GN +V+Y+ +    ++T +NI + NLA +D     ++ P   +N    TW
Sbjct: 26 IVCV--VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTL-PFQSVNYLMGTW 82

Query: 73 TLGKF 77
            G  
Sbjct: 83 PFGNI 87


>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
           engineering, GPCR network, PSI-biology, struct genomics,
           membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
           {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
           3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
          Length = 447

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 4   LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMAPT 62
           +         + +  ++++GN +V +      NL+  +N  VV+LA +D  + + ++   
Sbjct: 29  MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88

Query: 63  MVLNCFYETWTLGK-FCL 79
           + ++     +      CL
Sbjct: 89  ITIS---TGFCAACHGCL 103


>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
          BETA1-adrenoceptor, stabilising mutat biased agonist;
          HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
          2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
          2ycx_A* 2ycy_A* 2ycz_A*
          Length = 315

 Score = 43.9 bits (104), Expect = 6e-07
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          +   W   + L M  +  + + GN +V+     T+ L+T +N+ + +LA +D  +   + 
Sbjct: 6  LSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVV 65

Query: 61 PTMVLNCFYETWTLGK-FCL 79
          P         TW  G   C 
Sbjct: 66 PFGATLVVRGTWLWGSFLCE 85


>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
           genomics, PSI-2, protein structure initiative; HET: ITD
           OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
           3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
          Length = 502

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 12  TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYET 71
           ++I L    +VGNG+V+ +    K LR+ ++   ++L+ +D   + ++ P   ++     
Sbjct: 56  SIIFL--TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAVAN- 111

Query: 72  WTLGKF 77
           W  G F
Sbjct: 112 WYFGNF 117


>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
           beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
           {Aspergillus aculeatus} SCOP: b.80.1.3
          Length = 422

 Score = 28.6 bits (64), Expect = 0.17
 Identities = 1/36 (2%), Positives = 10/36 (27%)

Query: 18  TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDF 53
                   + +  +  +        + + N+   ++
Sbjct: 270 IGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNW 305


>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
           2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
           1ib4_A*
          Length = 339

 Score = 27.4 bits (61), Expect = 0.52
 Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 18  TMSMVGN-GIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNC 67
           T++ +   GIVV       +    + + + +    +       + T +L  
Sbjct: 255 TLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILIS 305


>3uyu_A Antifreeze protein; right-handed beta-helix fold, ICE binding
           protein; 1.57A {Leucosporidium} PDB: 3uyv_A*
          Length = 241

 Score = 25.4 bits (55), Expect = 2.4
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 5   WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRT--PSNILVVNLAFSD 52
           W  ++ +       ++  GNG   ++F     L         +   A S 
Sbjct: 122 WTSSVSVP----TDLTFEGNGDATWVFQIAGGLSMADGVAFTLAGGANST 167


>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein,
          protein-immune system complex; HET: NAG SIA GAL; 2.00A
          {Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A*
          3lzg_A* 3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 4f3z_A* 3gbn_A*
          3lzf_A* 3r2x_A* 4eef_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H*
          2wrg_H* 1ruz_H* 3hto_A* ...
          Length = 329

 Score = 24.7 bits (53), Expect = 4.0
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 14 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 73
          +C+G  +   +   V   L      T S  L+ +      C +  +AP  +  C    W 
Sbjct: 5  LCIGYHA-NNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWI 63

Query: 74 LG 75
          LG
Sbjct: 64 LG 65


>3vn3_A Antifreeze protein; right-handed beta-helix; HET: IYR; 0.95A
           {Typhula ishikariensis}
          Length = 223

 Score = 24.6 bits (53), Expect = 4.1
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 5   WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRT--PSNILVVNLAFSD 52
           W  ++G +       ++ G     +IF     L       I +V  A + 
Sbjct: 122 WTSSVGAS----ADFTISGTSTDTWIFQIDGTLDVATGKQITLVGGAQAK 167


>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion
          protein, protein, viral protein; HET: NAG; 1.60A
          {Influenza a virus} PDB: 3qqb_A* 3qqe_A* 3qqo_A*
          3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
          Length = 327

 Score = 24.7 bits (53), Expect = 4.4
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 14 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 73
          IC+G  +   +   V   L      T +  ++        C +  + P  + +C    W 
Sbjct: 5  ICIGYHA-NNSTEKVDTILERNVTVTHAKDILEKTHNGKLCKLNGIPPLELGDCSIAGWL 63

Query: 74 LG 75
          LG
Sbjct: 64 LG 65


>2v36_B Gamma-glutamyltranspeptidase small chain; transferase,
          glutathione biosynthesis, gamma-glutamyl transferase,
          acyltransferase, zymogen; 1.85A {Bacillus subtilis}
          PDB: 3a75_B*
          Length = 193

 Score = 24.1 bits (53), Expect = 5.8
 Identities = 4/11 (36%), Positives = 7/11 (63%)

Query: 55 MMFSMAPTMVL 65
           + SM PT++ 
Sbjct: 60 PLSSMTPTILF 70


>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
          structural GE oxidoreductase; HET: NDP; 1.60A
          {Escherichia coli} SCOP: c.1.7.1
          Length = 346

 Score = 24.0 bits (53), Expect = 6.7
 Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 5/19 (26%)

Query: 6  YQALGLT-----MICLGTM 19
          Y  +  +      + LGTM
Sbjct: 3  YHRIPHSSLEVSTLGLGTM 21


>2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase;
          HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B*
          2nqo_B* 3fnm_B*
          Length = 188

 Score = 24.1 bits (53), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 55 MMFSMAPTMVLN 66
           + SM+PT+VL 
Sbjct: 70 PLSSMSPTIVLK 81


>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A
           {Aspergillus niger} SCOP: b.80.1.3
          Length = 336

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 3/28 (10%), Positives = 7/28 (25%)

Query: 40  PSNILVVNLAFSDFCMMFSMAPTMVLNC 67
            + I + ++             T V   
Sbjct: 275 STGIPITDVTVDGVTGTLEDDATQVYIL 302


>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
          gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia
          coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B*
          2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
          Length = 190

 Score = 23.7 bits (52), Expect = 9.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 55 MMFSMAPTMVLN 66
           + SM+PT+V+ 
Sbjct: 70 PLSSMSPTIVVK 81


>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
          {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
          Length = 319

 Score = 23.9 bits (51), Expect = 9.3
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 14 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 73
          IC+G  S   +   V     T    T +  L+        C      P ++  C  E   
Sbjct: 3  ICIGYQS-TNSTETVDTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILDTCTIEGLI 61

Query: 74 LG 75
           G
Sbjct: 62 YG 63


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.336    0.144    0.491 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,244,745
Number of extensions: 54688
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 30
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.9 bits)