RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12172
         (84 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 3   PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
           P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+F    T
Sbjct: 34  PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93

Query: 63  MVLNCFYETWTLGKFC 78
            +    +  +  G   
Sbjct: 94  TLYTSLHGYFVFGPTG 109


>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 27.3 bits (60), Expect = 0.22
 Identities = 1/36 (2%), Positives = 10/36 (27%)

Query: 18  TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDF 53
                   + +  +  +        + + N+   ++
Sbjct: 270 IGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNW 305


>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 373

 Score = 26.2 bits (57), Expect = 0.55
 Identities = 2/35 (5%), Positives = 8/35 (22%)

Query: 18  TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD 52
               +   +     L         N+   +   ++
Sbjct: 282 VCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTN 316


>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1,
          Nlp) {Fruit fly (Drosophila melanogaster) [TaxId:
          7227]}
          Length = 105

 Score = 23.3 bits (50), Expect = 4.0
 Identities = 8/57 (14%), Positives = 18/57 (31%)

Query: 9  LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
          L +  I LG  +      VV +     +++ P  +L      +    +      +  
Sbjct: 30 LVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIAVLKAGETRAVNPDVEFYESKVTF 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.144    0.491 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,081
Number of extensions: 10903
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.6 bits)