BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12173
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136
Query: 174 AEEVGVALDLSSISSRQHRIK 194
+ AL+L SI S RI+
Sbjct: 137 CNAIQEALELDSIRSHHWRIQ 157
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136
Query: 174 AEEVGVALDLSSISSRQHRIK 194
+ AL+L SI S RI+
Sbjct: 137 XNAIQEALELDSIRSHHWRIQ 157
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 96/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GG +++R
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGLKSLR 59
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 60 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 119
Query: 174 AEEVGVALDLSSISSRQHRIK 194
+ AL+L SI S RI+
Sbjct: 120 CNAIQEALELDSIRSHHWRIQ 140
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 99/151 (65%), Gaps = 3/151 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDID---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 75 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
+ + L+L SI S I+ + NL
Sbjct: 135 SNAIREVLELDSIRSHHWCIQGCSAVTGENL 165
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + S ++ PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + S ++ PT+GFNI +Q + LN++++GGQ +R
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQ 155
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 6 RILLLGLDNAGKTTLLKQLAS--EDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQ 143
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Query: 61 DNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYF 120
DN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R +W YF
Sbjct: 27 DNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVA 180
E TD L++VVDSAD + EL++LL ++RL+ +L+ ANKQD+PGALS + A
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEA 143
Query: 181 LDLSSISSRQHRIK 194
L+L SI S RI+
Sbjct: 144 LELDSIRSHHWRIQ 157
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S +SH + PT+GFNI +Q + LN++++GG +R
Sbjct: 6 RILLLGLDNAGKTTLLKQLAS--EDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQ 143
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLD +GK+T++ ++ G + KPT GFN+ L LN+++LGGQ ++R
Sbjct: 20 RILILGLDGAGKTTILYRLQIGEVVTT---KPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W Y+ DT ++FVVDS D ++ A+ EL +L ++ L +LV ANKQD PGALS
Sbjct: 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 174 AEEVGVALDLSSISSRQHRI 193
A EV L+L + R I
Sbjct: 137 ASEVSKELNLVELKDRSWSI 156
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++ ++GL SGK+T + I+SG + ++ PT GFN+ + KG T+ ++++GGQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASG--QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 81
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y +V++VD+AD K+ + EL NLL +L +P+LV+ NK+D+PGAL
Sbjct: 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 141
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
+E+ ++LS+I R+ I+ + N+
Sbjct: 142 EKELIEKMNLSAIQDREICCYSISCKEKDNI 172
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++ ++GL SGK+T + I+SG + ++ PT GFN+ + KG T+ ++++GGQ
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASG--QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 88
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
R W Y +V++VD+AD K+ + EL NLL +L +P+LV+ NK+D+PGA
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 148
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
L +E+ ++LS+I R+ I+ + N+
Sbjct: 149 LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 181
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 50 IFQRK---ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFEL 106
+FQ+K IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++
Sbjct: 12 LFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT---IPTIGFNVETVEFRNISFTVWDV 68
Query: 107 GGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
GGQ+ +R W Y+ +TD L+FVVDS D ++ A EL ++ ++ L ILV ANKQ
Sbjct: 69 GGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQ 128
Query: 167 DVPGALSAEEVGVALDLSSISSRQHRIK 194
D+P A+SA EV L L++I R I+
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQ 156
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++ ++GL SGK+T + I+SG S ++ PT GFN+ + KG T+ I+++GGQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASG--QFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFR 81
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y + +V+++D+AD K+ + EL NLL +L +P+LV+ NK+D+P AL
Sbjct: 82 SMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 141
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
+++ ++LS+I R+ I+ + N+
Sbjct: 142 EKQLIEKMNLSAIQDREICCYSISCKEKDNI 172
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLD +GK+T++ ++ G + PT GFN+ +Q + ++++GGQ+
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITT---IPTIGFNVECVQYCNISFTVWDVGGQDR 73
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W Y+ +T+ ++FVVDS D S++ A ++ +L + L LV ANKQD+P A
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEA 133
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
+SA E+ L L SI +R I+ + L+
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYE 168
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++++ GLDNSGK+T+I Q+ +S H + T G+N+ +KG +F++GG + R
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKH-ITATVGYNVETFEKGRVAFTVFDMGGAKKFR 77
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRL-------STVPILVIANKQ 166
W TY+++ D ++FVVDS+D +L V E++ +L + + VP L ANK
Sbjct: 78 GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKM 137
Query: 167 DVPGALSAEEVGVALDLSSI 186
D GA +A E+ LDL+++
Sbjct: 138 DAAGAKTAAELVEILDLTTL 157
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK++++ ++ G+ + N+ LQ + +++LGGQ VR
Sbjct: 24 RVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV---NLETLQYKNISFEVWDLGGQTGVR 80
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YF DTD +++VVDS D ++ VA EL LL + L +L+ ANKQD+P A S
Sbjct: 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 174 AEEVGVALDLSSISSRQHRI 193
E+ L +SSI +R I
Sbjct: 141 EAEIAEQLGVSSIMNRTWTI 160
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ +Q + ++++GGQ+ +R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITT---IPTIGFNVETVQYKNISFTVWDVGGQDRIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ +T+ ++FVVDS D S++ A ++ +L + L LV ANKQD+P A+S
Sbjct: 59 SLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMS 118
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
A E+ L L SI +R I+ + L+
Sbjct: 119 AAEITEKLGLHSIRNRPWFIQATCATSGEGLYE 151
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
A E+ L L S+ R I+ + L+
Sbjct: 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
A E+ L L S+ R I+ + L+
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLD +GK+T++ ++ G + PT GFN+ +Q + ++++GGQ+
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITT---IPTIGFNVETVQYKNISFTVWDVGGQDR 73
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W Y+ +T+ ++FVVDS D S++ A ++ +L + L LV ANKQD+P A
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 133
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
+SA E+ L L SI +R I+ + L+
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYE 168
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A+
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ L L+ I R ++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQ 139
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A+
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ L L+ I R ++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQ 139
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
A E+ L L S+ R I+ + L+
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G + PT GFN+ + +++LGGQ +
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKNLKFQVWDLGGQTS 58
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ +TD +++VVDS D ++ ++ EL +L ++ L ++V ANKQD+ A
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 118
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
++ E+ AL L ++ R+ +I
Sbjct: 119 MTPSEMANALGLPALKDRKWQI 140
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 75 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 134
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
A E+ L L S+ R I+ + L+
Sbjct: 135 AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 166
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ L L+ I R ++
Sbjct: 132 PHEIQEKLGLTRIRDRNWYVQ 152
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A+
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ L L+ I R ++
Sbjct: 131 PHEIQEKLGLTRIRDRNWYVQ 151
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDK 76
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 136
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
++A E+ L L S+ R I+ + L+
Sbjct: 137 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 170
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGEYTLNIFELGGQE 110
+ K++I+GLDN+GK+T++ Q + PT G N+ I+ K + L ++++GGQE
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVV---HTSPTIGSNVEEIVVKNTHFL-MWDIGGQE 71
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
++R WNTY+ +T+ ++ VVDS D +L + EL +L + L +L+ ANKQD+ G
Sbjct: 72 SLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKG 131
Query: 171 ALSAEEVGVALDLSSISSRQHRIK 194
++A E+ L LSSI I+
Sbjct: 132 CMTAAEISKYLTLSSIKDHPWHIQ 155
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDK 378
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438
Query: 172 LSAEEVGVALDLSSISSRQHRIK 194
+ E+ L L+ I R ++
Sbjct: 439 MKPHEIQEKLGLTRIRDRNWYVQ 461
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ +Q + ++++GGQ+ +R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITT---IPTIGFNVETVQYKNISFTVWDVGGQDRIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ +T+ ++FV+DS D S++ A ++ +L + L LV ANKQD+P A+S
Sbjct: 76 SLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMS 135
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
A E+ L L SI +R I+ + L+
Sbjct: 136 AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYE 168
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q +IL++GLD +GK+T++ ++ G + PT GFN+ ++ ++++GGQ+
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNICFTVWDVGGQDK 85
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ +A EL+ +L + L +LV ANKQD+P A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
+ E+ L L + SR ++ + L+
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 41 FEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT 100
F + ++ + + K++I+GLDN+GK+T++ Q S + PT G N+ +
Sbjct: 5 FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTR 61
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
++++GGQE++R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L
Sbjct: 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 121
Query: 161 VIANKQDVPGALSAEEVGVALDLSSISSRQHRIK 194
+ ANKQDV ++ E+ L L+SI Q I+
Sbjct: 122 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 41 FEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT 100
F + ++ + + K++I+GLDN+GK+T++ Q S + PT G N+ +
Sbjct: 5 FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTR 61
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
++++GGQE++R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L
Sbjct: 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 121
Query: 161 VIANKQDVPGALSAEEVGVALDLSSISSRQHRIK 194
+ ANKQDV ++ E+ L L+SI Q I+
Sbjct: 122 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110
+ +IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GG +
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGLD 57
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
+R W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 171 ALSAEEVGVALDLSSISSRQHRIK 194
A+ E+ L L+ I R ++
Sbjct: 118 AMKPHEIQEKLGLTRIRDRNWYVQ 141
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110
+ +IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GG +
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGLD 58
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
+R W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 171 ALSAEEVGVALDLSSISSRQHRIK 194
A+ E+ L L+ I R ++
Sbjct: 119 AMKPHEIQEKLGLTRIRDRNWYVQ 142
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K++I+GLDN+GK+T++ Q S + PT G N+ + ++++GGQE+
Sbjct: 22 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+ ANKQDV
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 172 LSAEEVGVALDLSSISSRQHRIK 194
++ E+ L L+SI Q I+
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQ 161
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GG + +R
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGLDKIR 60
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 61 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 120
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
A E+ L L S+ R I+ + L+
Sbjct: 121 AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 152
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 44 VSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNI 103
+SK+ + +IL+LGLD +GK+T++ ++ G + + PT GFN+ + N+
Sbjct: 5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNV 61
Query: 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+++GG + +R W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ A
Sbjct: 62 WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 121
Query: 164 NKQDVPGALSAEEVGVALDLSSISSRQHRIK 194
NKQD+P A+ E+ L L+ I R ++
Sbjct: 122 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 152
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K++I+GLDN+GK+T++ Q S + PT G N+ + ++++GGQE+
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+ ANKQDV
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 172 LSAEEVGVALDLSSISSRQHRIK 194
++ E+ L L+SI Q I+
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQ 160
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ IL+ ANKQD+P A
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXK 118
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ L L+ I R ++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQ 139
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G + PT GFN+ + +++LGG +
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKNLKFQVWDLGGLTS 60
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ +TD +++VVDS D ++ ++ EL +L ++ L ++V ANKQD+ A
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 120
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
+++ E+ +L L ++ R+ +I
Sbjct: 121 MTSSEMANSLGLPALKDRKWQI 142
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q +IL++GLD +GK+T++ ++ G + PT GFN+ ++ ++++GGQ+
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNICFTVWDVGGQDR 73
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ A EL+ +L L +L+ ANKQD+P A
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNA 133
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
++ E+ L L S+ +R ++ + L+
Sbjct: 134 MAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYE 168
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLD +GK++++ ++ G + PT GFN+ ++ + ++++GGQ+
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDK 73
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W Y+++T ++FVVDS D ++ A EL +L + + +LV ANK D+P A
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 172 LSAEEVGVALDLSSISSRQ 190
+S EV L L +I +R+
Sbjct: 134 MSISEVTEKLGLQTIKNRK 152
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
+L LGLDNSGK+T+I ++ N S N+ PT GF+I + + +F++ GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQ-SQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN 82
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLG--DQRLSTVPILVIANKQDVPGAL 172
W Y+++ ++FV+DS+D ++ VA EL LL D + +PIL ANK D+ A+
Sbjct: 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV 142
Query: 173 SAEEVGVALDLSSISSRQHRI 193
++ +V L L +I + I
Sbjct: 143 TSVKVSQLLCLENIKDKPWHI 163
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L LGLDN+GK+TL+ + + + L+PT L G F+LGG R
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 59
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +VF+VD+ADP + A +EL L L VP +++ NK D P A+S
Sbjct: 60 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 119
Query: 174 AEEVGVALDLSSISSRQ 190
E+ AL L + + Q
Sbjct: 120 EAELRSALGLLNTTGSQ 136
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L LGLDN+GK+TL+ + + + L+PT L G F+LGG R
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +VF+VD+ADP + A +EL L L VP +++ NK D P A+S
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 174 AEEVGVALDLSSISSRQH 191
E+ AL L + + Q
Sbjct: 142 EAELRSALGLLNTTGSQR 159
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 9/142 (6%)
Query: 40 GFEEVSKVDDIFQR--KILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ 95
GF V + ++++ K++ LGLDN+GK+TL+ + H L PT +TI
Sbjct: 21 GFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE-ELTI-- 76
Query: 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155
T F+LGG E RR W Y + +VF+VD AD S+L + +EL L+ D+ +S
Sbjct: 77 -AGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETIS 135
Query: 156 TVPILVIANKQDVPGALSAEEV 177
VPIL++ NK D A+S E++
Sbjct: 136 NVPILILGNKIDRTDAISEEKL 157
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G + PT GFN+ + +++LGG +
Sbjct: 7 EXRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKNLKFQVWDLGGLTS 63
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ +TD +++VVDS D ++ ++ EL L ++ L ++V ANKQD A
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
++ E +L L ++ R+ +I
Sbjct: 124 XTSSEXANSLGLPALKDRKWQI 145
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 40 GFEEVSKVDDIFQR--KILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ 95
GF V + ++++ K++ LGLDN+GK+TL+ + H L PT +TI
Sbjct: 11 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE-ELTI-- 66
Query: 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155
T F+LGG RR W Y + +VF+VD AD +L + EL +L+ D+ ++
Sbjct: 67 -AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 125
Query: 156 TVPILVIANKQDVPGALSAEEV 177
VPIL++ NK D P A+S E +
Sbjct: 126 NVPILILGNKIDRPEAISEERL 147
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 40 GFEEVSKVDDIFQR--KILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ 95
GF V + ++++ K++ LGLDN+GK+TL+ + H L PT +TI
Sbjct: 8 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE-ELTI-- 63
Query: 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155
T F+LGG RR W Y + +VF+VD AD +L + EL +L+ D+ ++
Sbjct: 64 -AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 122
Query: 156 TVPILVIANKQDVPGALSAEEV 177
VPIL++ NK D P A+S E +
Sbjct: 123 NVPILILGNKIDRPEAISEERL 144
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 40 GFEEVSKVDDIFQR--KILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ 95
GF V + ++++ K++ LGLDN+GK+TL+ + H L PT +TI
Sbjct: 2 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE-ELTI-- 57
Query: 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155
T F+LGG RR W Y + +VF+VD AD +L + EL +L+ D+ ++
Sbjct: 58 -AGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 116
Query: 156 TVPILVIANKQDVPGALSAEEV 177
VPIL++ NK D P A+S E +
Sbjct: 117 NVPILILGNKIDRPEAISEERL 138
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYT-LNIFELGGQ 109
KI++ G GKS+ + ++ N+ T G + T++ GE T L +++ GQ
Sbjct: 30 KIVLAGDAAVGKSSFLMRLC--KNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 110 ENVRRFWNTYFEDTDLLVFVVD-SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
E R +YF D ++ + D + + S L + E +++ D TVPI+++ NK D+
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI--REWVDMIEDAAHETVPIMLVGNKADI 145
Query: 169 PGALSAE 175
+ E
Sbjct: 146 RDTAATE 152
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DP 135
T G T Q + ++F++GGQ + RR W F D ++FVV S+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
Query: 136 SKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L A K++ ++ L T+ +++ NKQD+
Sbjct: 250 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DP 135
T G T Q + ++F++GGQ + RR W F D ++FVV S+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
Query: 136 SKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L A K++ ++ L T+ +++ NKQD+
Sbjct: 250 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DP 135
T G T Q + ++F++GGQ + RR W F D ++FVV S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 136 SKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L A K++ ++ L T+ +++ NKQD+
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQEN 111
RKI ILG + GKS+L Q G S++ F I G EY L + + GQ+
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
F TY D + +LV+ V S + + V +L +++G + +PI+++ NK+D+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DP 135
T G T Q + ++F++GGQ + RR W F D ++FVV S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 136 SKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L A K++ ++ L T+ +++ NKQD+
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DP 135
T G T Q + ++F++GGQ + RR W F D ++FVV S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 136 SKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L A K++ ++ L T+ +++ NKQD+
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQEN 111
RKI ILG + GKS+L Q G S++ F I G EY L + + GQ+
Sbjct: 2 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 61
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
F TY D + +LV+ V S + + V +L +++G + +PI+++ NK+D+
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQEN 111
RKI ILG + GKS+L Q G S++ F I G EY L + + GQ+
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
F TY D + +LV+ V S + + V +L +++G + +PI+++ NK+D+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQEN 111
RKI ILG + GKS+L Q G S + F I G EY L + + GQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
F TY D + +LV+ V S + + V +L +++G + +PI+++ NK+D+
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 27/151 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSG--------NTSLSHNLKPTEGFNITILQKGEYT----- 100
KI+ G SGK+T +K I S SL+ + T F+ L GE
Sbjct: 16 KIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 101 LNIFELGGQENVRRFWNT----YFEDTDLLVFVVDSADPSKLPVAAMELKNL---LGDQR 153
+++ + GQ F+N D +VFV DSA P++L A ++N+ L +
Sbjct: 76 FHLYTVPGQV----FYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYG 130
Query: 154 LS--TVPILVIANKQDVPGALSAEEVGVALD 182
L+ VPI++ NK+D+P AL E V +D
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
QR +L +GL +SGK+ L ++ +G + + +L + +L G E+
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66
Query: 112 VR-RFWNTYFEDTDLLVFVVDSADPSK--LPVAAMELKNLLGDQRLSTVPILVIA-NKQD 167
+R + + + +VFVVDSA + VA + L+ L P L+IA NKQD
Sbjct: 67 LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126
Query: 168 VPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
+ A SA+ + L+ + +++ + APS L
Sbjct: 127 IAMAKSAKLIQQQLE-----KELNTLRVTRSAAPSTL 158
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS L PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGG 108
+ ++K++++G GK+ L+ S + E + I G + L +++ G
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 82
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F VDS D P K E+K+ VPI++
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW---VPEVKHF-----CPNVPIIL 134
Query: 162 IANKQDV 168
+ANK+D+
Sbjct: 135 VANKKDL 141
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGEYT-LNIFELGGQEN 111
K+LI+G GKS+L+ + + S S+ F I T+ GE L I++ GQE
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
R +TY+ T ++ V D L + +Q V +++ NK D P
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP-- 126
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
E V + + + Q I+L T A N++
Sbjct: 127 ---ERKVVETEDAYKFAGQMGIQLFETSAKENVN 157
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 7 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 64
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 8 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 65
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPS 91
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 6 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 63
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPS 89
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 12 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 69
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPS 95
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 8 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 65
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 15 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 72
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 100
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 7 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 64
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGG 108
++K++I+G GK+ L+ I + PT E + I G + L +++ G
Sbjct: 5 RKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F +DS D P K E+K+ VPI++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIIL 114
Query: 162 IANKQDV 168
+ NK+D+
Sbjct: 115 VGNKKDL 121
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGG 108
++K++I+G GK+ L+ I + PT E + I G + L +++ G
Sbjct: 5 RKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F +DS D P K E+K+ VPI++
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIIL 114
Query: 162 IANKQDV 168
+ NK+D+
Sbjct: 115 VGNKKDL 121
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEY-TLNIFELGGQ 109
KI+++G N GK+ L + +G + T G + + GE + +++ GQ
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGR--FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 110 ENVRR-FWNTYFEDTDLLVFVVDSADPS---KLPVAAMELK-NLLGDQRLSTVPILVIAN 164
E R+ Y+ + +VFV D + + LP E K +LL + +P +++ N
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND----IPRILVGN 144
Query: 165 KQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212
K D+ A+ V DL+ + H L T A + + HV +
Sbjct: 145 KCDLRSAIQ-----VPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAI 187
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELG 107
++K++I+G GK+ L+ I + PT E + I G + L +++
Sbjct: 4 IRKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 61
Query: 108 GQENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPIL 160
GQE+ R + DTD L+ F +DS D P K E+K+ VPI+
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPII 113
Query: 161 VIANKQDV 168
++ NK+D+
Sbjct: 114 LVGNKKDL 121
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 9 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 66
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGG 108
++K++I+G GK+ L+ I + PT E + I G + L +++ G
Sbjct: 3 RKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F +DS D P K E+K+ VPI++
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIIL 112
Query: 162 IANKQDV 168
+ NK+D+
Sbjct: 113 VGNKKDL 119
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGG 108
++K++I+G GK+ L+ I + PT E + I G + L +++ G
Sbjct: 3 RKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F +DS D P K E+K+ VPI++
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIIL 112
Query: 162 IANKQDV 168
+ NK+D+
Sbjct: 113 VGNKKDL 119
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEY-TLNIFELGGQ 109
KI+++G N GK+ L + +G + T G + + GE + +++ GQ
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGR--FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 110 ENVRR-FWNTYFEDTDLLVFVVDSADPS---KLPVAAMELK-NLLGDQRLSTVPILVIAN 164
E R+ Y+ + +VFV D + + LP E K +LL + +P +++ N
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND----IPRILVGN 135
Query: 165 KQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212
K D+ A+ V DL+ + H + L T A + + HV +
Sbjct: 136 KCDLRSAIQ-----VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 178
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDVAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 27/151 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSG--------NTSLSHNLKPTEGFNITILQKGEYT----- 100
KI+ G SGK+T +K I S SL+ + T F+ L GE
Sbjct: 16 KIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 101 LNIFELGGQENVRRFWNT----YFEDTDLLVFVVDSADPSKLPVAAMELKNL---LGDQR 153
+++ + GQ F+N D +VFV DSA P++L A +N L +
Sbjct: 76 FHLYTVPGQV----FYNASRKLILRGVDGIVFVADSA-PNRLRANAESXRNXRENLAEYG 130
Query: 154 LS--TVPILVIANKQDVPGALSAEEVGVALD 182
L+ VPI++ NK+D+P AL E V +D
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEXVRAVVD 161
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELG 107
++K++I+G GK+ L+ I + PT E + I G + L +++
Sbjct: 4 IRKKLVIVGDGACGKTCLL--IVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTA 61
Query: 108 GQENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPIL 160
GQE+ R + DTD L+ F +DS D P K E+K+ VPI+
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPII 113
Query: 161 VIANKQDV 168
++ NK+D+
Sbjct: 114 LVGNKKDL 121
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ GQE
Sbjct: 12 KCVVVGDGAVGKNCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 69
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT-LNIFELGGQENV 112
K++++G GK++L+ + G S+ E + + + KG+ L+I++ GQ++
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPILVIANKQ 166
R ++ D +L+ D P+ N+ + VPI+V+ K
Sbjct: 96 DRLRPLFYPDASVLLLCFDVTSPN-------SFDNIFNRWYPEVNHFCKKVPIIVVGCKT 148
Query: 167 DV 168
D+
Sbjct: 149 DL 150
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 9 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 68
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 69 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 120
Query: 164 NKQDV 168
NK+D+
Sbjct: 121 NKKDL 125
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 67 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 118
Query: 164 NKQDV 168
NK+D+
Sbjct: 119 NKKDL 123
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 6 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 66 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 117
Query: 164 NKQDV 168
NK+D+
Sbjct: 118 NKKDL 122
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T+ GE YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 136
Query: 164 NKQDV 168
NK+D+
Sbjct: 137 NKKDL 141
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 116
Query: 164 NKQDV 168
NK+D+
Sbjct: 117 NKKDL 121
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGG 108
++K++I+G GK+ L+ I PT E + I G + L +++ G
Sbjct: 7 RKKLVIVGDGACGKTCLL--IVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 64
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILV 161
QE+ R + DTD L+ F +DS D P K E+K+ VPI++
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIIL 116
Query: 162 IANKQDV 168
+ NK+D+
Sbjct: 117 VGNKKDL 123
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 67 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 118
Query: 164 NKQDV 168
NK+D+
Sbjct: 119 NKKDL 123
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 8 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 67
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 119
Query: 164 NKQDV 168
NK+D+
Sbjct: 120 NKKDL 124
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 79 LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV-------- 130
L HN T G + + ++ ++GGQ + R+ W ++F D D +FV
Sbjct: 141 LIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXK 200
Query: 131 --DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + S+L + K++ ++ L L+ NK D+
Sbjct: 201 LYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDL 240
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYT 100
S+ D +F K+L++G GKS L+ + S + + +++ T G + I L
Sbjct: 16 SEYDYLF--KLLLIGNSGVGKSCLLLRFS--DDTYTNDYISTIGVDFKIKTVELDGKTVK 71
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
L I++ GQE R ++Y+ + ++ V D D M L+ + STV L
Sbjct: 72 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKL 130
Query: 161 VIANKQDV 168
++ NK D+
Sbjct: 131 LVGNKCDL 138
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K +++G GK+ L+ ++ + + + +T++ GE YTL +F+ GQE+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKL 138
R + TD+ + PS
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 6 RKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 66 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 117
Query: 164 NKQDV 168
NK+D+
Sbjct: 118 NKKDL 122
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----XPNVPIILVG 136
Query: 164 NKQDV 168
NK+D+
Sbjct: 137 NKKDL 141
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
++K++I+G GK+ L+ S + E + I G + L +++ GQE
Sbjct: 5 RKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+ R + DTD L+ F +DS D P K E+K+ VPI+++
Sbjct: 65 DYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF-----CPNVPIILVG 116
Query: 164 NKQDV 168
NK+D+
Sbjct: 117 NKKDL 121
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYT 100
S+ D +F K+L++G GKS L+ + S + + +++ T G + I L
Sbjct: 3 SEYDYLF--KLLLIGNSGVGKSCLLLRFS--DDTYTNDYISTIGVDFKIKTVELDGKTVK 58
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
L I++ GQE R ++Y+ + ++ V D D M L+ + STV L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKL 117
Query: 161 VIANKQDVP 169
++ NK D+
Sbjct: 118 LVGNKCDLK 126
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYT 100
S+ D +F K+L++G GKS L+ + S + + +++ T G + I L
Sbjct: 3 SEYDYLF--KLLLIGNSGVGKSCLLLRFS--DDTYTNDYISTIGVDFKIKTVELDGKTVK 58
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
L I++ GQE R ++Y+ + ++ V D D M L+ + STV L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKL 117
Query: 161 VIANKQDVP 169
++ NK D+
Sbjct: 118 LVGNKCDLK 126
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGEYTLNIFELGGQEN 111
RK++ILG GK++L Q G S ++ ++ I L K E+ L++ + GQ+
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++ V V V + L + VP++++ NK D+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ G E
Sbjct: 9 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLE 66
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPS 92
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL +F+ G E
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPS 136
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPS 88
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI----TILQKGEYTLNIFELGGQ 109
K++ILG GK++L+ Q N S+ K T G + ++ T+ I++ GQ
Sbjct: 10 KVIILGDSGVGKTSLMNQYV--NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLL---GDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L + P +V+ NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 167 DV 168
D+
Sbjct: 128 DL 129
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV--- 140
+PT+G + T + +F++GGQ + R+ W FE ++F V +D ++ +
Sbjct: 165 RPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDR 224
Query: 141 ------AAMEL-KNLLGDQRLSTVPILVIANKQDV 168
+M+L ++ ++ + I++ NK+D+
Sbjct: 225 QTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI----TILQKGEYTLNIFELGGQ 109
K++ILG GK++L+ Q N S+ K T G + ++ T+ I++ GQ
Sbjct: 10 KVIILGDSGVGKTSLMNQYV--NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLL---GDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L + P +V+ NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 167 DV 168
D+
Sbjct: 128 DL 129
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI----TILQKGEYTLNIFELGGQ 109
K++ILG GK++L+ Q N S+ K T G + ++ T+ I++ GQ
Sbjct: 10 KVIILGDSGVGKTSLMNQYV--NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLL---GDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L + P +V+ NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 167 D 167
D
Sbjct: 128 D 128
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ IS PT + + +T++ GE YTL + + GQE
Sbjct: 5 KCVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKL 138
+ R + TD+ + PS
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN---ITILQKGEYTLNIFELGGQE 110
K +I+G GKS L+ Q + H+L F ITI K + L I++ GQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWDTAGQE 70
Query: 111 NVRRFWNTYFEDT--DLLVFVVDSADPSKLPVAAMELKNLLGDQRL---STVPILVIANK 165
+ R +Y+ LLV+ + D L L D R S + I++I NK
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFN------HLTTWLEDARQHSNSNMVIMLIGNK 124
Query: 166 QDVPGALSA-EEVGVALDLSSISSRQHRIKLIATQAPS 202
D+ +E G A +R+H + + T A +
Sbjct: 125 SDLESRREVKKEEGEAF------AREHGLIFMETSAKT 156
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + GQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + + V + A + +L + VP L++ NK D+
Sbjct: 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 42 EEVSKVD--DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQ 95
+EV +D + K+ ++G GKS LI +S + + T G + + +
Sbjct: 8 KEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67
Query: 96 KGEYTLNIFELGG------QENVRRFWN-TYFEDTDLLVFVVDSADPSKLPVAAMELKNL 148
++ +F L +E + ++WN Y+ +LVF V S + + A EL
Sbjct: 68 DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYA---ILVFDVSSMESFESCKAWFELLKS 124
Query: 149 LGDQRLSTVPILVIANKQDVP 169
R + +++ANK D+P
Sbjct: 125 ARPDRERPLRAVLVANKTDLP 145
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ----KG--------EYTL 101
K+ ++G +GK++L+KQ+ + T G N+ Q KG E
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIG--ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 102 NIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILV 161
+ ++ GGQE + + + + + ++DS S ++ G P++V
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKS-----PVIV 155
Query: 162 IANKQDVPGALSAEEVGVALDLSSISSRQHRI 193
+ NK D + + E+ + +I +R HRI
Sbjct: 156 VMNKIDENPSYNIEQKKINERFPAIENRFHRI 187
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ-KGEYT-LNIFELGG 108
F K L++G +GKS L+ Q N F I+ G+Y L I++ G
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 109 QENVRRFWNTYFEDT--DLLVFVVDSADPSKLPVAAMELKNLLGDQRL---STVPILVIA 163
QE R +Y+ LLV+ + S + L N L D R+ + I++
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYN------ALTNWLTDARMLASQNIVIILCG 122
Query: 164 NKQDV 168
NK+D+
Sbjct: 123 NKKDL 127
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFEL 106
F K++++G + GK+ ++++ +G + S T G + T+ +Q L I++
Sbjct: 28 FLFKLVLVGDASVGKTCVVQRFKTG--AFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 107 GGQENVRRFWNTYFEDTDLLVFVVDSADPSKL---PVAAMELKNLLGDQRLSTVPILVIA 163
GQE R +Y+ + + D S P +++ G S + L+I
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIG 141
Query: 164 NKQDV 168
NK D+
Sbjct: 142 NKSDL 146
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + GQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + + V + A + +L + VP L++ NK D+
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVV----------DSADPSKLPVAAMELKNLLG 150
+F++GGQ + R+ W FED ++F V + +++ + M ++
Sbjct: 176 FRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICN 235
Query: 151 DQRLSTVPILVIANKQDVPG 170
++ I++ NK+D+ G
Sbjct: 236 NKFFIDTSIILFLNKKDLFG 255
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 14 KLLLLGAGESGKSTIVKQM 32
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ-KGEYT-LNIFELGG 108
F K L++G +GKS L+ Q N F I+ G+Y L I++ G
Sbjct: 10 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 69
Query: 109 QENVRRFWNTYFEDT--DLLVFVVDSADPSKLPVAAMELKNLLGDQRL---STVPILVIA 163
QE R +Y+ LLV+ + S + L N L D R+ + I++
Sbjct: 70 QERFRSVTRSYYRGAAGALLVYDITSRETYN------ALTNWLTDARMLASQNIVIILCG 123
Query: 164 NKQDV 168
NK+D+
Sbjct: 124 NKKDL 128
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGEYTLNIFE 105
D +F K+++LG GKSTL +H ++ +E ++ K E TL +++
Sbjct: 10 DGVF--KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD 67
Query: 106 LGGQENVRRFWNTYF---EDTDLLVF-VVDSADPSKLPVAAMELKNLLGDQRLSTVPILV 161
+ Q + + + D L+VF V D SK+P + L+ + +P+++
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR---AGRPHHDLPVIL 124
Query: 162 IANKQDV 168
+ NK D+
Sbjct: 125 VGNKSDL 131
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + GQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + + V + A + +L + VP L++ NK D+
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + GQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 65
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + + V + A + +L + VP L++ NK D+
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
KI+++G GK+ L+ S G ++ E F+ + K E + L++++ GQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 113 RRFWNTYFEDTD--LLVFVVDS 132
R + D+D LL F V++
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNN 106
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT-LNIFELGGQENV 112
K++++G D GKS L Q+ + ++ + + ++ GE L+I + GQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 113 RRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
+ Y + L VF +++ + E + D VP++++ NK D+P
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS--EDVPMVLVGNKSDLP 122
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT-LNIFELGGQENV 112
K++++G D GKS L Q+ + ++ + + ++ GE L+I + GQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 113 RRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
+ Y + L VF +++ + E + D VP++++ NK D+P
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS--EDVPMVLVGNKCDLP 122
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKG-EYTLNIFELGGQE 110
K +++G GK+ L+ +S N + PT + + +++ G +Y L +++ GQE
Sbjct: 20 KCVVVGDGAVGKTCLL--MSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ R + TD+ + +P+ E L + VP L+I + D+
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGTQIDL 134
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGN--TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K +I+G GKS L+ Q + H + G I + + L I++ GQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP---ILVIANKQDV 168
R +Y+ + V D S L + L D R T P I++I NK D+
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYN----HLSSWLTDARNLTNPNTVIILIGNKADL 132
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
KI+++G GK+ L+ S G ++ E F+ + K E + L++++ GQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 113 RRFWNTYFEDTD--LLVFVVDS 132
R + D+D LL F V++
Sbjct: 84 DRLRPLSYADSDVVLLCFAVNN 105
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K+L+LG GKS L + I G ++ +I+ GE +L ++++ Q+
Sbjct: 9 KVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172
R D V V D A+ L ++ VPI+++ NK D+ +
Sbjct: 68 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL---V 124
Query: 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
+ EV V D + K I T A LHH
Sbjct: 125 RSREVSV--DEGRACAVVFDCKFIETSAA--LHH 154
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K+L+LG GKS L + I G ++ +I+ GE +L ++++ Q+
Sbjct: 4 KVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172
R D V V D A+ L ++ VPI+++ NK D+ +
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL---V 119
Query: 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
+ EV V D + K I T A LHH
Sbjct: 120 RSREVSV--DEGRACAVVFDCKFIETSAA--LHH 149
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K+L+LG GKS L + I G ++ +I+ GE +L ++++ Q+
Sbjct: 9 KVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172
R D V V D A+ L ++ VPI+++ NK D+ +
Sbjct: 68 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL---V 124
Query: 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206
+ EV V D + K I T A LHH
Sbjct: 125 RSREVSV--DEGRACAVVFDCKFIETSAA--LHH 154
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFV----------VDSADPSKLPVAAMELKNLLG 150
+F++GGQ + R+ W FE ++F+ V+ + +++ + ++
Sbjct: 166 FRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICN 225
Query: 151 DQRLSTVPILVIANKQDV 168
+ +T I++ NK+DV
Sbjct: 226 HRYFATTSIVLFLNKKDV 243
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 5 KLLLLGAGESGKSTIVKQM 23
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG 108
++I G N GKSTL+K +++ ++ T G N+ + G + I + G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFELGGQ 109
K+L++G GKS L+ + + + + + + T G + I L+ L I++ GQ
Sbjct: 11 KLLLIGDSGVGKSCLLLRFA--DDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
E R ++Y+ ++ V D D ++ + + V L++ NK D
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE-IDRYAMENVNKLLVGNKCD-- 125
Query: 170 GALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202
L ++ V V D + H IK I T A +
Sbjct: 126 --LVSKRV-VTSDEGRELADSHGIKFIETSAKN 155
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKGEYTLNIFELGGQEN 111
K +I+G GKS L+ Q + H+L F + + + L I++ GQE+
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRL---STVPILVIANKQDV 168
R +Y+ + V D L + L D R S + I++I NK D+
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFN----HLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 169 PGALSAE-EVGVALDLSSISSRQHRIKLIATQAPS 202
+ E G A +R+H + + T A +
Sbjct: 139 ESRRDVKREEGEAF------AREHGLIFMETSAKT 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI----TILQKGEYTLNIFELGGQ 109
K++ILG GK++L+ Q N S+ K T G + ++ T+ I++ G
Sbjct: 10 KVIILGDSGVGKTSLMNQYV--NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLL---GDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L + P +V+ NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 167 DV 168
D+
Sbjct: 128 DL 129
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGG 108
F K L++G +GKS L+ Q N F ++ G T L I++ G
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 109 QENVRRFWNTYFEDT--DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP---ILVIA 163
QE R +Y+ LLV+ + S + L L D R P +++
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYN------SLAAWLTDARTLASPNIVVILCG 137
Query: 164 NKQDV 168
NK+D+
Sbjct: 138 NKKDL 142
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 85 PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAME 144
PT G T + +F++GGQ + R+ W FE ++F V +D + E
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 145 LKNL----------LGDQRLSTVPILVIANKQDV 168
+ + ++ + I++ NK+D+
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-------TILQKGEYT-LN 102
F KI+++G GK+ L+++ + G P +G I T+ GE L
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGL------FPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 103 IFELGGQENVRRFWNTYFEDTDLLVFVVD 131
I++ GQE R +Y+ + L+ D
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYD 107
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT-LNIFELGGQENV 112
K++++G D GKS L Q+ + ++ + + ++ GE L+I + GQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 113 RRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
+ Y + L VF +++ + E + D VP++++ NK D+
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS--DDVPMVLVGNKCDL-- 120
Query: 171 ALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202
A E A DL +R + I I T A +
Sbjct: 121 AARTVESRQAQDL----ARSYGIPYIETSAKT 148
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTS-------LSHNLKP-----TEGFNITILQKGEYTL 101
K++I+G N GKS+L ++ ++ ++ +LK G + + G ++
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 102 NIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILV 161
+ +E QE V R ED ++++F VD ++L A E+ L R P+++
Sbjct: 63 DKWEKKIQEKVDR----ALEDAEVVLFAVDGR--AELTQADYEVAEYL---RRKGKPVIL 113
Query: 162 IANKQDVP 169
+A K D P
Sbjct: 114 VATKVDDP 121
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 35/196 (17%)
Query: 42 EEVSKVDD--IFQR--KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQ 95
EE+ K D + R +++I+G N GKSTL+ ++ + + ++ ++ T I+ I+
Sbjct: 229 EELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI 288
Query: 96 KGEYTLNIFELGGQENVRRFWNTY------------FEDTDLLVFVVDSADPSKLPVAAM 143
+G +F + VR N E D+++FV+D++ P
Sbjct: 289 RG----ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP-----LDE 339
Query: 144 ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
E + +L +R+ LV+ NK DV ++ EE+ + + + +H +K+ A +
Sbjct: 340 EDRKIL--ERIKNKRYLVVINKVDVVEKINEEEIK-----NKLGTDRHMVKISALKG-EG 391
Query: 204 LHHLHVSVVEAEQAMY 219
L L S+ Q ++
Sbjct: 392 LEKLEESIYRETQEIF 407
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD--------- 134
+PT+G + + + ++GGQ + R+ W F+ ++F+V S++
Sbjct: 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 245
Query: 135 -PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L + + ++ ++ S V I++ NK D+
Sbjct: 246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
KIL+LG SGKST +KQ+
Sbjct: 35 KILLLGAGESGKSTFLKQM 53
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 53 RKILILGLDNSGKSTLIKQIS 73
RK+L+LG SGKST+ KQI
Sbjct: 10 RKLLLLGAGESGKSTIFKQIK 30
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 103 IFELGGQENVRRFWNTYFEDTDLLVFV 129
+F++GGQ N RR W FE ++F
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFC 213
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD--------- 134
+PT+G + + + ++GGQ + R+ W F+ ++F+V S++
Sbjct: 162 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 221
Query: 135 -PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
++L + + ++ ++ S V I++ NK D+
Sbjct: 222 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
KIL+LG SGKST +KQ+
Sbjct: 11 KILLLGAGESGKSTFLKQM 29
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + G E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLE 62
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD- 167
+ + YF + LLVF + + S A + L +P+LV+ NK D
Sbjct: 63 DYAAIRDNYFRSGEGFLLVFSI-TEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 168 -----VP---GALSAEEVGVALDLSSISSR 189
VP AEE GV +S +R
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTR 151
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + G E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLE 66
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD- 167
+ + YF + LLVF + + S A + L +P+LV+ NK D
Sbjct: 67 DYAAIRDNYFRSGEGFLLVFSI-TEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 168 -----VP---GALSAEEVGVALDLSSISSR 189
VP AEE GV +S +R
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTR 155
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ-KGEYT-LNIFELGG 108
F K L++G +GKS L+ Q N F I+ G+Y L I++ G
Sbjct: 7 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
Query: 109 QENVRRFWNTYFEDT--DLLVFVVDSADPSKLPVAAMELKNLLGDQRL---STVPILVIA 163
E R +Y+ LLV+ + S + L N L D R+ + I++
Sbjct: 67 LERFRSVTRSYYRGAAGALLVYDITSRETYN------ALTNWLTDARMLASQNIVIILCG 120
Query: 164 NKQDVP 169
NK+D+
Sbjct: 121 NKKDLD 126
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGEYTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + +L E ++I + G E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLE 65
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + + V + A + +L + VP L++ NK D+
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDVP 169
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 117
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 123
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 123
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
+ I+G + GK+TL+ I + T+ + + + + G E
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+ TD+++ VV +AD +P + + + + VPI+V NK D P A
Sbjct: 71 MRARGAQVTDIVILVV-AADDGVMP----QTVEAINHAKAANVPIIVAINKMDKPEA 122
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 142
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL-------QKGEYTLNIFEL 106
K+ I+G SGK+TL++Q+ S T G ++ +K + LN+++
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 107 GGQENVRRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
G+E F++T +F L V + V A + R S+ P++++
Sbjct: 62 AGREE---FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGT 118
Query: 165 KQDV 168
DV
Sbjct: 119 HLDV 122
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 150
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 225 NKWFTETSIILFLNKKDL 242
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 4 KLLLLGAGESGKSTIVKQM 22
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 232 NKWFTETSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 11 KLLLLGAGESGKSTIVKQM 29
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 232 NKWFTETSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 11 KLLLLGAGESGKSTIVKQM 29
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 169 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 228
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 229 NKWFTDTSIILFLNKKDL 246
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 8 KLLLLGAGESGKSTIVKQM 26
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 164 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 223
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 224 NKWFTDTSIILFLNKKDL 241
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 3 KLLLLGAGESGKSTIVKQM 21
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 170 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 229
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 230 NKWFTDTSIILFLNKKDL 247
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 9 KLLLLGAGESGKSTIVKQM 27
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 202 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 261
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 262 NKWFTDTSIILFLNKKDL 279
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 41 KLLLLGAGESGKSTIVKQM 59
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 225 NKWFTDTSIILFLNKKDL 242
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 4 KLLLLGAGESGKSTIVKQM 22
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 170 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 229
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 230 NKWFTDTSIILFLNKKDL 247
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 9 KLLLLGARESGKSTIVKQM 27
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 255 NKWFTDTSIILFLNKKDL 272
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 255 NKWFTETSIILFLNKKDL 272
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 225 NKWFTDTSIILFLNKKDL 242
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 4 KLLLLGAGESGKSTIVKQM 22
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 255 NKWFTDTSIILFLNKKDL 272
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 232 NKWFTDTSIILFLNKKDL 249
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 11 KLLLLGAGESGKSTIVKQM 29
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 167 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 227 NKWFTDTSIILFLNKKDL 244
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 6 KLLLLGARESGKSTIVKQM 24
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL-------QKGEYTLNIFEL 106
K+ I+G SGK+TL++Q+ S T G ++ +K + LN+++
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 107 GGQENVRRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
G+E F++T +F L V + V A + R S+ P++++
Sbjct: 64 AGREE---FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGT 120
Query: 165 KQDV 168
DV
Sbjct: 121 HLDV 124
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 196 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 255
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 256 NKWFTDTSIILFLNKKDL 273
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 35 KLLLLGAGESGKSTIVKQM 53
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 166 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 225
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 226 NKWFTDTSIILFLNKKDL 243
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 5 KLLLLGAGESGKSTIVKQM 23
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 167 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 227 NKWFTDTSIILFLNKKDL 244
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 6 KLLLLGAGESGKSTIVKQM 24
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 171 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 230
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 231 NKWFTDTSIILFLNKKDL 248
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 10 KLLLLGAGESGKSTIVKQM 28
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 198 FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICN 257
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 258 NKWFTDTSIILFLNKKDL 275
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 37 KLLLLGAGESGKSTIVKQM 55
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 198 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 257
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 258 NKWFTDTSIILFLNKKDL 275
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 37 KLLLLGAGESGKSTIVKQM 55
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNL----------LG 150
+F++GGQ + R+ W FE ++F V +D + E+ +
Sbjct: 167 FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 151 DQRLSTVPILVIANKQDV 168
++ + I++ NK+D+
Sbjct: 227 NKWFTDTSIILFLNKKDL 244
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 6 KLLLLGAGESGKSTIVKQM 24
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST IKQ+
Sbjct: 35 KLLLLGTGESGKSTFIKQM 53
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 40 GFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI 93
GF E++ +D QR + + ++G + T+L H L PT G I I
Sbjct: 425 GFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGI 478
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST IKQ+
Sbjct: 35 KLLLLGTGESGKSTFIKQM 53
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta
Gamma In Complex With An Inhibitor Ym-254890
Length = 355
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST IKQ+
Sbjct: 37 KLLLLGTGESGKSTFIKQM 55
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST IKQ+
Sbjct: 29 KLLLLGTGESGKSTFIKQM 47
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST IKQ+
Sbjct: 9 KLLLLGTGESGKSTFIKQM 27
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFELGGQ 109
KILI+G GKS+L+ + + + + L T G + + + + L I++ GQ
Sbjct: 17 KILIIGESGVGKSSLLLRFT--DDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 110 ENVRRFWNTYFEDTDLLVFVVD 131
E R +Y+ ++ V D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYD 96
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 112 VRRFWNTYFEDTDLLVFVVDSAD 134
R ++Y+ ++ V D D
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTD 92
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGEYTLNIFELG 107
I Q K+++LG GKS+L+ + G F L I++
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA---N 164
GQE Y+ + V D + A KN + + + P +VIA N
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA----KNWVKELQRQASPNIVIALAGN 118
Query: 165 KQDVPGALSAE 175
K D+ + E
Sbjct: 119 KADLASKRAVE 129
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human
G-Alpha-I1
Length = 354
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 35 KLLLLGAGESGKSTIVKQM 53
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN-----------LLGDQ 152
F++GGQ + R+ W FE ++F V +D L +A E N + ++
Sbjct: 195 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD-LVLAEDEEXNRXHESXKLFDSICNNK 253
Query: 153 RLSTVPILVIANKQDV 168
+ I++ NK+D+
Sbjct: 254 WFTDTSIILFLNKKDL 269
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human
G-Alpha-I1
Length = 354
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 35 KLLLLGAGESGKSTIVKQM 53
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp,
Mg2+ And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp,
Mg2+ And Alf4-
Length = 359
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
KIL+LG SGKST +KQ+
Sbjct: 37 KILLLGAGESGKSTFLKQM 55
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPT---EGFNITILQKGEYTLNIFELG 107
++K+L++G SGKS++ I S ++ + L T E ++ L G TLN+++ G
Sbjct: 6 RKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL--GNMTLNLWDCG 63
Query: 108 GQENVRRFWNTYF 120
GQ+ F YF
Sbjct: 64 GQD---VFMENYF 73
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 54 KILILGLDNSGKSTLIKQI 72
KIL+LG SGKST +KQ+
Sbjct: 11 KILLLGAGESGKSTFLKQM 29
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQEN 111
K+L++G GK+ L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDV 168
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYT--LNIFELGGQENV 112
+L++G GKS L+ + + + S+ F I ++ T L I++ GQE
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS-TVPILVIANKQDVP 169
R ++Y+ ++ V D D L+ + D+ S V L++ NK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 116
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 20 CTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSL 79
C Y T + R STP G + + + +S L+ +++G T L
Sbjct: 175 CKYITLYGYDPSRPSTPATYGKHRPTYATVFYYSTL-------PARSRLLANLAAGPTVL 227
Query: 80 SHNLKPTEGFNITILQKGE 98
H PT G ++ + Q G+
Sbjct: 228 EHFDSPTYGPHLLLPQTGD 246
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFE 105
+D + I I+G N GKSTL+ ++ S+ S + T + I +G Y +
Sbjct: 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62
Query: 106 LGG-----QENVRRFWN----TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST 156
G + + R N + D +L++FVV+ + P M L L R
Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKL----REGK 116
Query: 157 VPILVIANKQD 167
P+++ NK D
Sbjct: 117 APVILAVNKVD 127
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKP--TEGFNITILQKGEYTLN 102
++LI+G+ N+GKST+I ++ G + S +P T+G L+ G L+
Sbjct: 101 RVLIVGVPNTGKSTIINKL-KGKRASSVGAQPGITKGIQWFSLENGVKILD 150
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGG----- 108
I I+G N GKSTL+ ++ S+ S + T + I +G Y + G
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 109 QENVRRFWN----TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
+ + R N + D +L++FVV+ + P M L L R P+++ N
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKL----REGKAPVILAVN 121
Query: 165 KQD 167
K D
Sbjct: 122 KVD 124
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTS 78
+ LI+G+ N GKSTLI +++ N +
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIA 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,181,495
Number of Sequences: 62578
Number of extensions: 238295
Number of successful extensions: 1253
Number of sequences better than 100.0: 241
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 288
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)