Query psy12173
Match_columns 224
No_of_seqs 138 out of 1896
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 20:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.2E-32 9.1E-37 201.1 15.4 165 47-221 4-175 (205)
2 PLN00223 ADP-ribosylation fact 100.0 3.7E-30 7.9E-35 196.5 19.0 161 51-216 16-176 (181)
3 cd04149 Arf6 Arf6 subfamily. 100.0 4.4E-30 9.5E-35 193.9 18.3 156 51-211 8-163 (168)
4 smart00177 ARF ARF-like small 100.0 7.8E-30 1.7E-34 193.7 18.7 161 51-217 12-172 (175)
5 cd04150 Arf1_5_like Arf1-Arf5- 100.0 7.7E-30 1.7E-34 190.8 17.9 154 53-211 1-154 (159)
6 KOG0092|consensus 100.0 1.3E-30 2.9E-35 192.5 12.8 158 50-217 3-166 (200)
7 KOG0078|consensus 100.0 5E-30 1.1E-34 192.7 15.3 164 48-221 8-177 (207)
8 PTZ00133 ADP-ribosylation fact 100.0 2.3E-29 4.9E-34 192.3 19.0 162 52-218 17-178 (182)
9 cd04121 Rab40 Rab40 subfamily. 100.0 3.3E-29 7.2E-34 192.1 18.3 159 50-219 4-168 (189)
10 KOG0098|consensus 100.0 1.6E-29 3.5E-34 185.5 14.6 162 50-221 4-171 (216)
11 KOG0094|consensus 100.0 2.2E-29 4.8E-34 186.1 15.2 160 51-218 21-184 (221)
12 cd04154 Arl2 Arl2 subfamily. 100.0 5.2E-29 1.1E-33 188.8 17.4 156 51-211 13-168 (173)
13 cd04120 Rab12 Rab12 subfamily. 100.0 9E-29 2E-33 191.5 18.3 158 54-220 2-165 (202)
14 cd04158 ARD1 ARD1 subfamily. 100.0 1.3E-28 2.7E-33 186.0 18.5 161 54-220 1-162 (169)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.8E-29 8.2E-34 190.9 15.6 158 50-218 3-180 (182)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.3E-28 5E-33 185.2 18.0 159 52-219 2-165 (172)
17 cd04133 Rop_like Rop subfamily 100.0 1.3E-28 2.8E-33 186.9 16.1 157 53-221 2-175 (176)
18 cd01875 RhoG RhoG subfamily. 100.0 1.1E-28 2.4E-33 190.0 15.9 163 51-218 2-177 (191)
19 cd04157 Arl6 Arl6 subfamily. 100.0 2.6E-28 5.6E-33 182.5 17.5 154 54-211 1-157 (162)
20 cd04122 Rab14 Rab14 subfamily. 100.0 2.5E-28 5.3E-33 183.8 17.4 157 52-218 2-164 (166)
21 KOG0394|consensus 100.0 2.4E-29 5.2E-34 184.2 10.6 163 50-220 7-180 (210)
22 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.7E-28 5.8E-33 183.4 16.2 154 55-214 2-162 (164)
23 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.2E-28 1.1E-32 183.5 17.7 156 52-212 15-170 (174)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.6E-28 5.7E-33 185.3 15.6 158 53-217 2-174 (175)
25 KOG0080|consensus 100.0 1E-28 2.2E-33 177.0 12.3 162 50-220 9-176 (209)
26 cd04131 Rnd Rnd subfamily. Th 100.0 2.6E-28 5.6E-33 185.8 15.3 155 53-218 2-176 (178)
27 cd00877 Ran Ran (Ras-related n 100.0 4.3E-28 9.3E-33 182.6 16.1 155 53-218 1-159 (166)
28 cd04127 Rab27A Rab27a subfamil 100.0 9.4E-28 2E-32 182.8 18.0 160 51-219 3-178 (180)
29 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.2E-28 1.8E-32 186.6 17.6 159 53-219 1-169 (201)
30 KOG0073|consensus 100.0 8.8E-28 1.9E-32 172.7 16.3 165 51-220 15-180 (185)
31 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.3E-27 2.8E-32 180.2 18.2 147 54-203 1-148 (167)
32 cd04151 Arl1 Arl1 subfamily. 100.0 1.1E-27 2.3E-32 178.9 17.4 153 54-211 1-153 (158)
33 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.7E-28 1E-32 185.0 15.5 158 53-217 1-165 (182)
34 cd04126 Rab20 Rab20 subfamily. 100.0 1E-27 2.2E-32 187.7 17.7 163 53-219 1-191 (220)
35 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-27 2.9E-32 180.0 17.3 157 51-217 2-164 (167)
36 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.2E-27 2.6E-32 188.4 17.5 159 51-220 12-190 (232)
37 PTZ00369 Ras-like protein; Pro 100.0 9.6E-28 2.1E-32 184.4 16.4 162 50-220 3-169 (189)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 8E-28 1.7E-32 188.4 16.1 159 53-220 2-178 (222)
39 PLN03071 GTP-binding nuclear p 100.0 9.8E-28 2.1E-32 188.4 15.9 158 50-219 11-173 (219)
40 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-27 4.1E-32 178.5 16.6 152 53-213 2-158 (164)
41 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.8E-27 8.3E-32 180.2 18.5 164 52-219 3-171 (183)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3E-27 6.5E-32 178.7 17.5 158 54-221 2-167 (170)
43 PF00025 Arf: ADP-ribosylation 100.0 1.1E-27 2.4E-32 181.8 14.9 156 50-210 12-168 (175)
44 cd04136 Rap_like Rap-like subf 100.0 1.7E-27 3.7E-32 178.3 15.7 152 53-213 2-158 (163)
45 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.1E-27 8.8E-32 175.6 17.4 154 54-212 1-154 (158)
46 cd04119 RJL RJL (RabJ-Like) su 100.0 3.8E-27 8.2E-32 176.9 17.3 155 53-216 1-165 (168)
47 cd00879 Sar1 Sar1 subfamily. 100.0 6.6E-27 1.4E-31 179.7 18.9 159 51-212 18-185 (190)
48 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4E-27 8.6E-32 175.9 17.2 153 54-211 1-155 (160)
49 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.3E-27 7.3E-32 177.5 16.7 158 54-211 1-162 (167)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.5E-27 1.4E-31 175.9 18.0 155 52-216 2-162 (166)
51 smart00178 SAR Sar1p-like memb 100.0 6.7E-27 1.4E-31 179.0 18.1 155 52-211 17-178 (184)
52 KOG0079|consensus 100.0 9.6E-28 2.1E-32 169.7 12.1 156 50-219 6-170 (198)
53 KOG0087|consensus 100.0 1.3E-27 2.9E-32 178.9 13.5 166 47-222 9-180 (222)
54 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.2E-27 1.3E-31 174.8 17.2 153 53-214 2-158 (162)
55 KOG0093|consensus 100.0 1.7E-27 3.7E-32 168.3 12.9 161 48-221 17-186 (193)
56 cd01864 Rab19 Rab19 subfamily. 100.0 8.7E-27 1.9E-31 175.1 17.8 154 51-213 2-161 (165)
57 cd01865 Rab3 Rab3 subfamily. 100.0 7.8E-27 1.7E-31 175.5 17.5 152 53-214 2-159 (165)
58 cd04117 Rab15 Rab15 subfamily. 100.0 7.4E-27 1.6E-31 175.0 16.9 152 53-214 1-158 (161)
59 cd01871 Rac1_like Rac1-like su 100.0 3.5E-27 7.6E-32 179.0 15.1 158 53-214 2-171 (174)
60 KOG0086|consensus 100.0 3.2E-27 6.9E-32 168.1 13.5 163 48-220 5-173 (214)
61 cd04144 Ras2 Ras2 subfamily. 100.0 7.7E-27 1.7E-31 179.6 16.8 155 54-217 1-162 (190)
62 cd04116 Rab9 Rab9 subfamily. 100.0 1.3E-26 2.8E-31 175.0 17.5 158 50-215 3-168 (170)
63 cd04124 RabL2 RabL2 subfamily. 100.0 8.7E-27 1.9E-31 174.6 16.2 155 53-219 1-159 (161)
64 cd04111 Rab39 Rab39 subfamily. 99.9 1.4E-26 3.1E-31 180.8 17.9 160 52-220 2-168 (211)
65 cd01866 Rab2 Rab2 subfamily. 99.9 2.3E-26 5E-31 173.4 18.3 158 51-218 3-166 (168)
66 smart00173 RAS Ras subfamily o 99.9 1.1E-26 2.4E-31 174.2 16.5 155 53-217 1-160 (164)
67 cd04103 Centaurin_gamma Centau 99.9 7E-27 1.5E-31 174.6 15.1 150 53-215 1-156 (158)
68 cd04159 Arl10_like Arl10-like 99.9 2.7E-26 5.9E-31 170.3 18.3 152 55-210 2-153 (159)
69 cd04134 Rho3 Rho3 subfamily. 99.9 3.8E-27 8.3E-32 181.1 14.1 163 53-219 1-175 (189)
70 cd04110 Rab35 Rab35 subfamily. 99.9 1.8E-26 3.9E-31 178.7 18.0 158 51-219 5-168 (199)
71 KOG0071|consensus 99.9 7.3E-27 1.6E-31 163.8 14.1 157 51-212 16-172 (180)
72 cd04145 M_R_Ras_like M-Ras/R-R 99.9 9.4E-27 2E-31 174.4 15.6 153 52-213 2-159 (164)
73 cd04176 Rap2 Rap2 subgroup. T 99.9 1.1E-26 2.4E-31 174.0 15.9 153 53-214 2-159 (163)
74 cd04109 Rab28 Rab28 subfamily. 99.9 2.1E-26 4.6E-31 180.4 18.1 155 53-216 1-164 (215)
75 PF00071 Ras: Ras family; Int 99.9 8.1E-27 1.8E-31 174.6 14.3 155 54-218 1-161 (162)
76 cd01868 Rab11_like Rab11-like. 99.9 3.4E-26 7.4E-31 171.8 17.6 153 52-214 3-161 (165)
77 cd04125 RabA_like RabA-like su 99.9 4.5E-26 9.7E-31 175.0 18.6 158 53-220 1-164 (188)
78 cd04106 Rab23_lke Rab23-like s 99.9 2.6E-26 5.5E-31 171.8 16.5 148 53-211 1-156 (162)
79 KOG0070|consensus 99.9 5.4E-27 1.2E-31 172.8 12.2 162 50-217 15-176 (181)
80 cd04140 ARHI_like ARHI subfami 99.9 2E-26 4.4E-31 173.2 15.6 152 53-213 2-160 (165)
81 cd04112 Rab26 Rab26 subfamily. 99.9 5.4E-26 1.2E-30 175.0 18.2 159 53-220 1-165 (191)
82 smart00176 RAN Ran (Ras-relate 99.9 1.5E-26 3.3E-31 178.8 15.1 151 58-219 1-155 (200)
83 PLN03108 Rab family protein; P 99.9 8.2E-26 1.8E-30 176.4 19.3 162 50-221 4-171 (210)
84 cd04132 Rho4_like Rho4-like su 99.9 4.4E-26 9.5E-31 174.7 17.2 157 53-219 1-168 (187)
85 cd04113 Rab4 Rab4 subfamily. 99.9 5.8E-26 1.3E-30 169.8 17.1 153 53-215 1-159 (161)
86 cd04155 Arl3 Arl3 subfamily. 99.9 7.7E-26 1.7E-30 171.1 17.9 156 51-211 13-168 (173)
87 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.3E-26 1.4E-30 171.4 17.1 154 52-214 2-165 (170)
88 PLN03110 Rab GTPase; Provision 99.9 9.2E-26 2E-30 176.9 18.5 159 50-218 10-174 (216)
89 cd04142 RRP22 RRP22 subfamily. 99.9 7.5E-26 1.6E-30 175.0 17.0 159 53-219 1-175 (198)
90 cd01861 Rab6 Rab6 subfamily. 99.9 1.2E-25 2.7E-30 167.9 17.3 153 53-216 1-159 (161)
91 KOG0095|consensus 99.9 1.5E-26 3.2E-31 164.1 11.5 163 50-221 5-172 (213)
92 cd04143 Rhes_like Rhes_like su 99.9 1.1E-25 2.5E-30 179.3 18.0 155 53-216 1-168 (247)
93 smart00175 RAB Rab subfamily o 99.9 1.5E-25 3.2E-30 167.8 17.6 154 53-216 1-160 (164)
94 KOG0091|consensus 99.9 2.2E-26 4.7E-31 165.5 12.0 165 50-223 6-178 (213)
95 smart00174 RHO Rho (Ras homolo 99.9 3.7E-26 8.1E-31 173.0 13.8 160 55-218 1-172 (174)
96 cd01892 Miro2 Miro2 subfamily. 99.9 9E-26 1.9E-30 170.5 15.3 154 50-217 2-165 (169)
97 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.9E-25 4.2E-30 167.4 17.0 151 53-214 1-160 (164)
98 cd01862 Rab7 Rab7 subfamily. 99.9 3.2E-25 7E-30 167.3 18.3 160 53-220 1-169 (172)
99 cd01860 Rab5_related Rab5-rela 99.9 2.7E-25 5.8E-30 166.4 17.6 153 52-214 1-159 (163)
100 cd01863 Rab18 Rab18 subfamily. 99.9 3.3E-25 7.2E-30 165.6 17.7 152 53-213 1-157 (161)
101 cd04177 RSR1 RSR1 subgroup. R 99.9 1.2E-25 2.6E-30 169.5 15.0 155 53-216 2-162 (168)
102 cd04139 RalA_RalB RalA/RalB su 99.9 2.8E-25 6.1E-30 166.2 16.4 154 53-215 1-159 (164)
103 KOG0075|consensus 99.9 7.6E-26 1.7E-30 159.9 12.2 156 52-212 20-175 (186)
104 cd01893 Miro1 Miro1 subfamily. 99.9 1.9E-25 4.2E-30 168.1 15.0 159 53-218 1-163 (166)
105 cd04135 Tc10 TC10 subfamily. 99.9 1.9E-25 4.2E-30 169.1 14.3 162 53-217 1-173 (174)
106 cd04118 Rab24 Rab24 subfamily. 99.9 1.3E-24 2.8E-29 167.4 18.5 157 53-219 1-167 (193)
107 PLN03118 Rab family protein; P 99.9 1.3E-24 2.8E-29 169.9 18.3 160 50-219 12-178 (211)
108 KOG0081|consensus 99.9 6.8E-27 1.5E-31 167.4 4.3 161 49-221 6-184 (219)
109 cd04130 Wrch_1 Wrch-1 subfamil 99.9 8E-25 1.7E-29 165.8 15.5 153 53-215 1-171 (173)
110 cd04123 Rab21 Rab21 subfamily. 99.9 1.9E-24 4E-29 161.3 17.2 150 53-212 1-156 (162)
111 cd01873 RhoBTB RhoBTB subfamil 99.9 4.7E-25 1E-29 170.1 14.1 153 52-215 2-193 (195)
112 cd04146 RERG_RasL11_like RERG/ 99.9 3.9E-25 8.4E-30 166.1 13.1 154 54-216 1-162 (165)
113 cd04148 RGK RGK subfamily. Th 99.9 1.8E-24 3.8E-29 170.1 17.3 154 53-217 1-162 (221)
114 cd01870 RhoA_like RhoA-like su 99.9 9.7E-25 2.1E-29 165.4 15.1 159 53-215 2-172 (175)
115 cd04147 Ras_dva Ras-dva subfam 99.9 1.2E-24 2.6E-29 168.5 15.6 155 54-216 1-161 (198)
116 KOG0097|consensus 99.9 1.2E-24 2.6E-29 153.2 13.4 163 49-221 8-176 (215)
117 cd00154 Rab Rab family. Rab G 99.9 2.8E-24 6E-29 159.3 16.3 149 53-211 1-155 (159)
118 cd04137 RheB Rheb (Ras Homolog 99.9 3.3E-24 7.1E-29 163.3 16.7 156 53-217 2-162 (180)
119 cd04114 Rab30 Rab30 subfamily. 99.9 6.5E-24 1.4E-28 159.9 18.0 155 51-214 6-165 (169)
120 KOG0395|consensus 99.9 1.3E-24 2.8E-29 167.0 14.3 160 51-219 2-166 (196)
121 KOG0088|consensus 99.9 6.6E-26 1.4E-30 162.2 6.3 166 50-223 11-180 (218)
122 PTZ00132 GTP-binding nuclear p 99.9 6.4E-24 1.4E-28 166.4 16.9 160 49-219 6-169 (215)
123 cd00876 Ras Ras family. The R 99.9 1.3E-23 2.9E-28 156.4 15.6 151 54-213 1-156 (160)
124 cd01897 NOG NOG1 is a nucleola 99.9 2.6E-23 5.6E-28 156.5 16.8 156 53-218 1-167 (168)
125 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.5E-23 5.4E-28 160.9 16.8 117 53-171 1-144 (202)
126 cd00157 Rho Rho (Ras homology) 99.9 8.3E-24 1.8E-28 159.4 13.9 150 53-211 1-166 (171)
127 KOG0393|consensus 99.9 1.1E-24 2.3E-29 164.5 8.0 166 51-220 3-181 (198)
128 cd04129 Rho2 Rho2 subfamily. 99.9 3.3E-23 7.2E-28 158.9 15.3 157 53-219 2-174 (187)
129 KOG0074|consensus 99.9 1.6E-23 3.4E-28 147.3 11.2 154 51-209 16-170 (185)
130 cd04171 SelB SelB subfamily. 99.9 6.8E-23 1.5E-27 153.3 14.8 148 53-208 1-156 (164)
131 PRK12299 obgE GTPase CgtA; Rev 99.9 1.1E-22 2.4E-27 168.3 17.1 182 31-220 137-329 (335)
132 KOG0076|consensus 99.9 7.5E-24 1.6E-28 154.0 8.3 177 21-219 5-187 (197)
133 cd01878 HflX HflX subfamily. 99.9 2.2E-22 4.8E-27 156.3 16.6 154 50-216 39-202 (204)
134 KOG0083|consensus 99.9 2.7E-24 5.8E-29 149.9 4.9 149 57-217 2-159 (192)
135 cd01898 Obg Obg subfamily. Th 99.9 1.9E-22 4E-27 152.0 15.3 151 54-210 2-163 (170)
136 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.6E-22 7.7E-27 150.1 15.8 159 54-219 2-166 (168)
137 PF02421 FeoB_N: Ferrous iron 99.9 2.6E-23 5.7E-28 153.1 9.2 143 53-213 1-155 (156)
138 PLN00023 GTP-binding protein; 99.9 2E-22 4.4E-27 163.6 14.6 124 46-171 15-166 (334)
139 TIGR02729 Obg_CgtA Obg family 99.9 5.9E-22 1.3E-26 163.7 16.4 178 33-217 138-327 (329)
140 TIGR03156 GTP_HflX GTP-binding 99.9 1E-21 2.2E-26 163.7 17.2 152 51-216 188-349 (351)
141 cd01891 TypA_BipA TypA (tyrosi 99.9 2.5E-21 5.4E-26 149.4 16.7 151 52-207 2-171 (194)
142 cd01890 LepA LepA subfamily. 99.9 2.9E-21 6.2E-26 146.8 16.3 151 53-216 1-174 (179)
143 KOG0072|consensus 99.9 1.7E-22 3.7E-27 142.5 8.5 161 51-217 17-177 (182)
144 TIGR00231 small_GTP small GTP- 99.9 5E-21 1.1E-25 141.4 16.5 148 53-209 2-155 (161)
145 PRK12297 obgE GTPase CgtA; Rev 99.9 3.6E-21 7.8E-26 163.1 17.1 179 32-221 138-329 (424)
146 PRK03003 GTP-binding protein D 99.9 7.9E-21 1.7E-25 164.8 19.2 162 51-220 210-383 (472)
147 COG1100 GTPase SAR1 and relate 99.9 3.7E-21 8.1E-26 150.9 14.8 166 52-219 5-186 (219)
148 cd01879 FeoB Ferrous iron tran 99.9 3.4E-21 7.5E-26 143.2 13.7 147 57-218 1-156 (158)
149 PRK12296 obgE GTPase CgtA; Rev 99.9 5.2E-21 1.1E-25 164.2 15.9 180 33-220 140-341 (500)
150 TIGR00436 era GTP-binding prot 99.9 9.9E-21 2.1E-25 153.2 16.2 152 54-218 2-163 (270)
151 PRK15494 era GTPase Era; Provi 99.9 1.5E-20 3.1E-25 156.5 17.4 155 50-216 50-213 (339)
152 TIGR02528 EutP ethanolamine ut 99.9 3E-21 6.5E-26 141.4 11.8 130 54-210 2-137 (142)
153 PRK04213 GTP-binding protein; 99.9 1.1E-20 2.5E-25 146.4 15.5 158 51-218 8-191 (201)
154 cd01881 Obg_like The Obg-like 99.9 3.1E-21 6.6E-26 146.0 11.6 152 57-214 1-172 (176)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.4E-20 7.4E-25 137.4 16.0 145 53-217 2-155 (157)
156 PRK03003 GTP-binding protein D 99.9 4.1E-20 8.8E-25 160.4 18.7 154 50-218 36-198 (472)
157 cd00881 GTP_translation_factor 99.9 2.9E-20 6.3E-25 142.1 15.6 159 54-218 1-186 (189)
158 cd01889 SelB_euk SelB subfamil 99.9 1.5E-20 3.3E-25 144.8 14.0 157 53-217 1-184 (192)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.4E-20 9.4E-25 158.1 17.8 151 51-220 202-361 (442)
160 cd01888 eIF2_gamma eIF2-gamma 99.8 1.8E-20 3.9E-25 145.5 13.1 160 53-220 1-200 (203)
161 PF00009 GTP_EFTU: Elongation 99.8 7.2E-21 1.6E-25 146.1 10.6 160 51-217 2-185 (188)
162 TIGR03598 GTPase_YsxC ribosome 99.8 3.6E-20 7.9E-25 141.1 14.0 145 50-207 16-179 (179)
163 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-19 2.9E-24 136.2 16.9 157 52-216 2-172 (174)
164 PRK05291 trmE tRNA modificatio 99.8 4.5E-20 9.7E-25 158.8 16.0 148 51-219 214-370 (449)
165 cd01894 EngA1 EngA1 subfamily. 99.8 3.4E-20 7.3E-25 137.5 13.2 145 56-215 1-154 (157)
166 TIGR03594 GTPase_EngA ribosome 99.8 4.5E-20 9.8E-25 158.7 15.9 162 51-220 171-345 (429)
167 PRK11058 GTPase HflX; Provisio 99.8 1.1E-19 2.4E-24 154.9 17.7 155 53-219 198-362 (426)
168 cd00882 Ras_like_GTPase Ras-li 99.8 3.1E-20 6.8E-25 135.7 12.4 145 57-210 1-152 (157)
169 TIGR00487 IF-2 translation ini 99.8 1E-19 2.2E-24 160.4 17.3 157 50-212 85-244 (587)
170 cd04105 SR_beta Signal recogni 99.8 7.7E-20 1.7E-24 141.9 13.7 122 54-178 2-131 (203)
171 PRK12298 obgE GTPase CgtA; Rev 99.8 1.2E-19 2.6E-24 153.0 15.8 182 34-220 141-334 (390)
172 TIGR00475 selB selenocysteine- 99.8 1.8E-19 3.9E-24 159.3 16.5 159 53-220 1-167 (581)
173 PRK05306 infB translation init 99.8 2.2E-19 4.9E-24 161.8 17.1 157 49-211 287-445 (787)
174 COG2229 Predicted GTPase [Gene 99.8 4.1E-19 8.9E-24 131.0 15.4 160 48-216 6-176 (187)
175 KOG4252|consensus 99.8 2.1E-21 4.6E-26 141.9 3.3 163 50-223 18-186 (246)
176 cd04163 Era Era subfamily. Er 99.8 4E-19 8.7E-24 132.5 15.4 154 52-216 3-166 (168)
177 PTZ00099 rab6; Provisional 99.8 2.8E-19 6.1E-24 135.7 14.6 134 75-219 3-142 (176)
178 PRK15467 ethanolamine utilizat 99.8 2.5E-19 5.4E-24 133.8 13.5 140 54-219 3-147 (158)
179 TIGR03594 GTPase_EngA ribosome 99.8 5.5E-19 1.2E-23 152.0 17.5 150 54-218 1-159 (429)
180 PRK09518 bifunctional cytidyla 99.8 6.8E-19 1.5E-23 159.4 18.7 162 51-220 449-622 (712)
181 PRK00093 GTP-binding protein D 99.8 4.5E-19 9.7E-24 152.8 16.5 162 51-220 172-345 (435)
182 PRK00093 GTP-binding protein D 99.8 5.4E-19 1.2E-23 152.3 16.9 148 53-215 2-158 (435)
183 PRK00454 engB GTP-binding prot 99.8 5.8E-19 1.3E-23 136.1 15.0 157 50-218 22-193 (196)
184 PRK00089 era GTPase Era; Revie 99.8 8.3E-19 1.8E-23 143.6 16.7 157 51-218 4-170 (292)
185 PF08477 Miro: Miro-like prote 99.8 2.9E-20 6.3E-25 132.1 6.8 112 54-167 1-119 (119)
186 COG1159 Era GTPase [General fu 99.8 6.7E-19 1.5E-23 139.6 15.0 159 50-219 4-172 (298)
187 CHL00189 infB translation init 99.8 7.7E-19 1.7E-23 157.1 16.9 159 50-215 242-406 (742)
188 PRK09554 feoB ferrous iron tra 99.8 6.2E-19 1.4E-23 159.5 15.8 150 51-218 2-167 (772)
189 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.4E-19 1.6E-23 137.0 14.1 151 54-210 1-186 (208)
190 COG1160 Predicted GTPases [Gen 99.8 7.1E-19 1.5E-23 146.7 14.5 151 53-218 4-164 (444)
191 KOG1673|consensus 99.8 7.4E-20 1.6E-24 130.8 7.3 170 45-218 13-186 (205)
192 cd00880 Era_like Era (E. coli 99.8 1E-18 2.3E-23 129.0 13.5 152 57-216 1-161 (163)
193 TIGR01393 lepA GTP-binding pro 99.8 2.1E-18 4.5E-23 152.7 17.5 155 51-218 2-179 (595)
194 PRK12317 elongation factor 1-a 99.8 1.2E-18 2.6E-23 149.6 15.4 156 50-209 4-196 (425)
195 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-18 2.3E-23 137.2 13.4 150 54-208 1-195 (219)
196 PRK09518 bifunctional cytidyla 99.8 3.8E-18 8.3E-23 154.5 17.8 153 51-218 274-435 (712)
197 TIGR00483 EF-1_alpha translati 99.8 9.6E-19 2.1E-23 150.1 13.2 155 50-208 5-197 (426)
198 cd01896 DRG The developmentall 99.8 3E-18 6.5E-23 135.6 15.0 83 54-136 2-91 (233)
199 cd01884 EF_Tu EF-Tu subfamily. 99.8 6E-18 1.3E-22 130.3 15.2 149 52-207 2-172 (195)
200 COG1160 Predicted GTPases [Gen 99.8 6.3E-18 1.4E-22 141.1 15.7 165 50-222 176-354 (444)
201 TIGR00437 feoB ferrous iron tr 99.8 1.7E-18 3.7E-23 153.2 13.0 140 59-216 1-152 (591)
202 COG0370 FeoB Fe2+ transport sy 99.8 2.8E-18 6E-23 149.1 13.9 147 51-215 2-160 (653)
203 PRK05433 GTP-binding protein L 99.8 1.4E-17 2.9E-22 147.7 17.6 156 50-218 5-183 (600)
204 COG0486 ThdF Predicted GTPase 99.8 1.4E-17 3E-22 139.4 16.1 154 51-221 216-378 (454)
205 PRK10512 selenocysteinyl-tRNA- 99.8 8.7E-18 1.9E-22 149.1 15.9 159 54-218 2-165 (614)
206 TIGR03680 eif2g_arch translati 99.8 4.9E-18 1.1E-22 144.7 13.5 160 50-217 2-194 (406)
207 KOG1489|consensus 99.8 4.9E-18 1.1E-22 135.1 11.6 175 32-216 176-364 (366)
208 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.7E-17 3.8E-22 130.4 14.7 152 54-211 1-215 (224)
209 TIGR00491 aIF-2 translation in 99.8 2.2E-17 4.8E-22 145.4 16.8 115 51-170 3-135 (590)
210 TIGR01394 TypA_BipA GTP-bindin 99.8 4.1E-17 8.9E-22 144.2 16.7 148 53-205 2-168 (594)
211 cd04168 TetM_like Tet(M)-like 99.8 4.9E-17 1.1E-21 129.0 15.4 112 54-170 1-130 (237)
212 PRK04000 translation initiatio 99.8 1.7E-17 3.8E-22 141.4 13.7 161 50-218 7-200 (411)
213 KOG0096|consensus 99.8 5.8E-18 1.3E-22 125.1 9.1 156 51-217 9-168 (216)
214 PRK10218 GTP-binding protein; 99.8 4.3E-17 9.3E-22 144.0 16.3 151 51-206 4-173 (607)
215 KOG0090|consensus 99.7 9.2E-17 2E-21 121.2 14.8 128 52-182 38-171 (238)
216 KOG3883|consensus 99.7 1.2E-16 2.6E-21 114.2 14.2 158 51-215 8-172 (198)
217 KOG1707|consensus 99.7 4.2E-18 9.1E-23 144.8 7.1 165 49-221 6-177 (625)
218 PF09439 SRPRB: Signal recogni 99.7 3E-18 6.5E-23 129.0 4.5 129 52-184 3-140 (181)
219 cd01876 YihA_EngB The YihA (En 99.7 1.5E-16 3.3E-21 118.9 13.9 153 54-216 1-168 (170)
220 cd04169 RF3 RF3 subfamily. Pe 99.7 2.2E-16 4.7E-21 127.3 15.4 126 53-183 3-153 (267)
221 COG1084 Predicted GTPase [Gene 99.7 2.5E-16 5.3E-21 126.3 15.4 148 51-207 167-325 (346)
222 COG2262 HflX GTPases [General 99.7 2.7E-16 5.9E-21 129.6 16.0 157 50-219 190-356 (411)
223 TIGR00485 EF-Tu translation el 99.7 2.5E-16 5.4E-21 133.9 15.8 154 50-210 10-185 (394)
224 PRK04004 translation initiatio 99.7 2.7E-16 5.8E-21 139.0 16.2 115 50-169 4-136 (586)
225 PRK12736 elongation factor Tu; 99.7 2.6E-16 5.6E-21 133.7 15.2 148 50-204 10-179 (394)
226 COG0532 InfB Translation initi 99.7 3.9E-16 8.5E-21 132.4 15.7 155 51-211 4-163 (509)
227 COG0536 Obg Predicted GTPase [ 99.7 1.3E-16 2.8E-21 128.5 11.8 201 15-221 122-335 (369)
228 cd01886 EF-G Elongation factor 99.7 7.3E-16 1.6E-20 124.4 15.9 137 54-201 1-158 (270)
229 KOG0077|consensus 99.7 1.1E-16 2.4E-21 115.9 9.7 150 52-206 20-181 (193)
230 PLN03126 Elongation factor Tu; 99.7 2.9E-16 6.3E-21 135.6 13.6 152 48-206 77-250 (478)
231 TIGR02034 CysN sulfate adenyly 99.7 2.3E-16 4.9E-21 134.5 12.7 152 53-208 1-187 (406)
232 PLN00043 elongation factor 1-a 99.7 7.9E-16 1.7E-20 132.3 15.8 152 50-208 5-203 (447)
233 cd04167 Snu114p Snu114p subfam 99.7 4E-16 8.7E-21 122.0 12.9 112 53-169 1-136 (213)
234 PRK12735 elongation factor Tu; 99.7 4.7E-16 1E-20 132.2 14.2 150 50-206 10-181 (396)
235 PF10662 PduV-EutP: Ethanolami 99.7 2.7E-16 5.8E-21 113.6 10.6 134 54-215 3-142 (143)
236 PRK05124 cysN sulfate adenylyl 99.7 3.6E-16 7.8E-21 135.3 13.4 157 49-209 24-216 (474)
237 PTZ00141 elongation factor 1- 99.7 5.8E-16 1.3E-20 133.1 14.6 153 50-208 5-203 (446)
238 CHL00071 tufA elongation facto 99.7 4.4E-16 9.6E-21 132.9 13.8 150 50-206 10-181 (409)
239 COG0218 Predicted GTPase [Gene 99.7 1.8E-15 3.8E-20 114.2 14.8 158 50-220 22-198 (200)
240 KOG4423|consensus 99.7 3.7E-18 8E-23 125.8 -1.7 165 50-222 23-198 (229)
241 PRK00049 elongation factor Tu; 99.7 3E-15 6.5E-20 127.2 14.9 149 50-205 10-180 (396)
242 PRK05506 bifunctional sulfate 99.7 1.3E-15 2.8E-20 136.6 13.2 155 50-208 22-211 (632)
243 PLN03127 Elongation factor Tu; 99.6 3.6E-15 7.7E-20 128.1 14.3 116 50-170 59-191 (447)
244 cd04104 p47_IIGP_like p47 (47- 99.6 1.8E-15 4E-20 116.9 11.4 158 53-220 2-185 (197)
245 PTZ00327 eukaryotic translatio 99.6 2.1E-15 4.7E-20 129.4 12.5 162 48-217 30-231 (460)
246 KOG1145|consensus 99.6 1.1E-14 2.4E-19 123.4 16.1 153 48-207 149-305 (683)
247 KOG1423|consensus 99.6 9.5E-15 2.1E-19 116.0 14.3 124 44-171 64-200 (379)
248 PF01926 MMR_HSR1: 50S ribosom 99.6 1.2E-14 2.6E-19 102.8 13.6 106 54-165 1-116 (116)
249 PRK13351 elongation factor G; 99.6 6E-15 1.3E-19 133.7 15.0 116 51-171 7-140 (687)
250 KOG0462|consensus 99.6 1.9E-15 4.2E-20 127.9 10.8 157 48-217 56-233 (650)
251 cd04170 EF-G_bact Elongation f 99.6 1.8E-14 4E-19 116.5 16.2 113 54-171 1-131 (268)
252 cd01885 EF2 EF2 (for archaea a 99.6 5.4E-15 1.2E-19 115.9 11.9 112 53-169 1-138 (222)
253 PRK00741 prfC peptide chain re 99.6 1.2E-14 2.6E-19 127.0 15.0 129 50-183 8-161 (526)
254 COG1163 DRG Predicted GTPase [ 99.6 2E-14 4.3E-19 115.1 14.3 158 48-218 59-288 (365)
255 cd01899 Ygr210 Ygr210 subfamil 99.6 3E-14 6.4E-19 117.2 15.4 80 55-134 1-111 (318)
256 TIGR00484 EF-G translation elo 99.6 2.9E-14 6.3E-19 129.1 15.4 143 50-203 8-171 (689)
257 COG5256 TEF1 Translation elong 99.6 2.2E-14 4.7E-19 118.4 11.4 157 50-209 5-202 (428)
258 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 6.3E-14 1.4E-18 110.0 12.9 116 54-171 1-126 (232)
259 COG3596 Predicted GTPase [Gene 99.6 1.9E-14 4.1E-19 113.1 8.8 164 49-218 36-221 (296)
260 PRK12739 elongation factor G; 99.6 1.3E-13 2.8E-18 124.8 15.4 117 50-171 6-140 (691)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 3.1E-13 6.6E-18 104.4 15.4 118 53-172 1-132 (196)
262 smart00275 G_alpha G protein a 99.6 3.1E-14 6.7E-19 118.5 10.4 86 85-170 170-265 (342)
263 TIGR00503 prfC peptide chain r 99.5 1.2E-13 2.6E-18 120.8 14.5 129 50-183 9-162 (527)
264 KOG1191|consensus 99.5 1.4E-13 3E-18 115.6 13.9 168 50-221 266-452 (531)
265 cd00066 G-alpha G protein alph 99.5 4.4E-14 9.6E-19 116.7 10.9 87 84-170 146-242 (317)
266 PRK00007 elongation factor G; 99.5 1.3E-13 2.8E-18 124.8 14.3 117 50-171 8-142 (693)
267 PRK09602 translation-associate 99.5 6.5E-13 1.4E-17 112.4 15.1 81 53-133 2-113 (396)
268 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.4E-12 2.9E-17 102.9 15.8 149 49-208 36-186 (225)
269 PRK09866 hypothetical protein; 99.5 5.1E-13 1.1E-17 116.5 14.3 112 99-216 230-350 (741)
270 COG0481 LepA Membrane GTPase L 99.5 8.3E-14 1.8E-18 116.5 9.1 154 50-216 7-183 (603)
271 KOG0082|consensus 99.5 1E-13 2.2E-18 113.7 8.8 89 83-171 179-277 (354)
272 COG2895 CysN GTPases - Sulfate 99.5 2.1E-13 4.5E-18 110.4 10.2 154 50-207 4-192 (431)
273 PRK12740 elongation factor G; 99.5 8.1E-13 1.8E-17 119.6 14.2 109 58-171 1-127 (668)
274 cd01850 CDC_Septin CDC/Septin. 99.5 1.2E-12 2.6E-17 106.1 12.6 114 52-171 4-158 (276)
275 KOG1490|consensus 99.4 5.3E-13 1.1E-17 112.3 9.7 165 50-218 166-341 (620)
276 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.4E-17 119.3 11.6 116 50-170 17-152 (720)
277 PRK14845 translation initiatio 99.4 6E-12 1.3E-16 116.6 15.5 103 63-170 472-592 (1049)
278 COG5257 GCD11 Translation init 99.4 1.1E-12 2.5E-17 104.9 7.8 161 50-219 8-202 (415)
279 KOG1144|consensus 99.4 5.7E-12 1.2E-16 110.3 11.5 117 47-169 470-605 (1064)
280 PRK13768 GTPase; Provisional 99.4 3.6E-13 7.8E-18 107.9 3.4 118 99-218 97-246 (253)
281 PLN00116 translation elongatio 99.4 7.3E-12 1.6E-16 115.6 12.1 116 49-169 16-163 (843)
282 cd01853 Toc34_like Toc34-like 99.4 3.2E-11 7E-16 96.2 14.2 121 48-170 27-163 (249)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.3 5.8E-11 1.2E-15 96.5 15.2 117 50-169 36-166 (313)
284 PTZ00416 elongation factor 2; 99.3 8.6E-12 1.9E-16 114.9 11.6 115 50-169 17-157 (836)
285 PTZ00258 GTP-binding protein; 99.3 2.5E-11 5.3E-16 102.0 13.0 84 50-133 19-126 (390)
286 COG1217 TypA Predicted membran 99.3 8.5E-12 1.8E-16 104.4 10.0 149 51-204 4-171 (603)
287 COG4108 PrfC Peptide chain rel 99.3 8.2E-12 1.8E-16 103.8 9.8 130 51-185 11-165 (528)
288 KOG0410|consensus 99.3 6.1E-12 1.3E-16 100.9 8.2 152 50-219 176-341 (410)
289 PRK09601 GTP-binding protein Y 99.3 4.9E-11 1.1E-15 99.2 13.8 81 53-133 3-107 (364)
290 COG4917 EutP Ethanolamine util 99.3 7.3E-12 1.6E-16 87.0 6.8 134 54-213 3-140 (148)
291 PF03029 ATP_bind_1: Conserved 99.3 5.3E-12 1.2E-16 100.0 6.6 112 100-219 92-237 (238)
292 PF04548 AIG1: AIG1 family; I 99.3 8.7E-11 1.9E-15 91.8 12.3 120 53-174 1-134 (212)
293 smart00010 small_GTPase Small 99.3 7.5E-12 1.6E-16 89.0 5.8 113 53-206 1-114 (124)
294 PRK09435 membrane ATPase/prote 99.3 7.3E-11 1.6E-15 97.5 12.3 111 98-221 148-262 (332)
295 KOG0458|consensus 99.3 2.2E-11 4.8E-16 104.3 9.4 168 50-219 175-384 (603)
296 PRK07560 elongation factor EF- 99.3 4.5E-11 9.7E-16 109.0 11.6 116 50-170 18-153 (731)
297 COG3276 SelB Selenocysteine-sp 99.3 5.7E-11 1.2E-15 99.1 11.0 157 54-218 2-161 (447)
298 KOG1532|consensus 99.2 3.3E-11 7.2E-16 94.8 7.9 117 99-219 116-264 (366)
299 KOG0461|consensus 99.2 1.7E-10 3.7E-15 93.4 11.8 163 50-219 5-189 (522)
300 COG0050 TufB GTPases - transla 99.2 3.9E-10 8.6E-15 89.6 11.8 161 50-219 10-194 (394)
301 PF03308 ArgK: ArgK protein; 99.2 1.9E-11 4.1E-16 96.1 4.4 156 51-221 28-232 (266)
302 PF00503 G-alpha: G-protein al 99.2 5.5E-11 1.2E-15 101.2 7.3 84 86-169 222-316 (389)
303 TIGR00750 lao LAO/AO transport 99.2 7.3E-10 1.6E-14 91.1 13.4 109 98-219 126-238 (300)
304 COG0480 FusA Translation elong 99.2 4.3E-10 9.3E-15 100.8 12.3 130 49-183 7-158 (697)
305 COG0012 Predicted GTPase, prob 99.1 1.6E-09 3.6E-14 89.2 14.1 83 52-134 2-109 (372)
306 COG1703 ArgK Putative periplas 99.1 3.7E-10 8.1E-15 90.1 9.5 160 50-222 49-257 (323)
307 KOG0447|consensus 99.1 2.9E-09 6.4E-14 91.0 15.3 161 50-217 306-538 (980)
308 PF00350 Dynamin_N: Dynamin fa 99.1 6.4E-10 1.4E-14 83.5 10.3 64 99-166 101-168 (168)
309 KOG3886|consensus 99.1 1.8E-10 3.9E-15 88.5 6.2 147 53-201 5-162 (295)
310 PF05049 IIGP: Interferon-indu 99.1 2.9E-10 6.3E-15 94.7 7.8 109 51-168 34-153 (376)
311 TIGR02836 spore_IV_A stage IV 99.1 4.4E-09 9.5E-14 88.0 14.5 116 50-168 15-192 (492)
312 TIGR00993 3a0901s04IAP86 chlor 99.1 3.1E-09 6.7E-14 93.6 13.2 119 50-170 116-250 (763)
313 smart00053 DYNc Dynamin, GTPas 99.1 1.9E-08 4.2E-13 79.6 16.2 117 51-171 25-207 (240)
314 cd01900 YchF YchF subfamily. 99.1 1.1E-09 2.4E-14 88.3 9.2 79 55-133 1-103 (274)
315 KOG0099|consensus 99.0 3.3E-10 7.1E-15 88.6 4.9 83 87-169 190-282 (379)
316 KOG0460|consensus 99.0 8.1E-09 1.8E-13 83.7 12.4 148 49-202 51-219 (449)
317 TIGR00157 ribosome small subun 99.0 1.1E-09 2.5E-14 87.3 7.3 90 110-210 24-115 (245)
318 TIGR00101 ureG urease accessor 99.0 5.4E-09 1.2E-13 80.8 10.5 98 99-216 92-193 (199)
319 KOG0085|consensus 99.0 6.4E-11 1.4E-15 91.1 -0.4 88 84-171 184-281 (359)
320 KOG0468|consensus 99.0 3.4E-09 7.4E-14 92.3 9.3 116 48-168 124-261 (971)
321 PF00735 Septin: Septin; Inte 98.9 8.3E-09 1.8E-13 83.8 10.5 117 52-174 4-160 (281)
322 KOG1707|consensus 98.9 3.1E-08 6.8E-13 85.3 13.9 155 45-216 418-581 (625)
323 TIGR00073 hypB hydrogenase acc 98.9 2.4E-09 5.3E-14 83.3 6.5 55 156-216 148-204 (207)
324 COG5258 GTPBP1 GTPase [General 98.9 2.5E-08 5.3E-13 82.2 11.8 154 48-206 113-327 (527)
325 KOG3905|consensus 98.8 7.6E-08 1.7E-12 77.8 12.1 82 51-135 51-140 (473)
326 KOG1491|consensus 98.8 9.9E-08 2.1E-12 77.5 12.3 85 50-134 18-126 (391)
327 KOG1954|consensus 98.8 1.1E-07 2.4E-12 78.1 11.6 118 50-171 56-226 (532)
328 PF05783 DLIC: Dynein light in 98.8 5.1E-08 1.1E-12 84.2 10.0 80 51-135 24-113 (472)
329 cd01859 MJ1464 MJ1464. This f 98.8 2.4E-08 5.2E-13 74.1 6.8 94 112-218 2-95 (156)
330 KOG1486|consensus 98.8 1.4E-07 3E-12 73.8 11.0 99 50-148 60-166 (364)
331 KOG0705|consensus 98.7 1.3E-08 2.9E-13 86.9 5.5 157 50-219 28-190 (749)
332 KOG0466|consensus 98.7 5.6E-09 1.2E-13 83.5 2.0 165 49-217 35-239 (466)
333 KOG2486|consensus 98.7 1.5E-07 3.3E-12 74.5 8.8 154 49-211 133-309 (320)
334 TIGR00092 GTP-binding protein 98.6 2.3E-07 5E-12 77.5 9.8 82 53-134 3-109 (368)
335 COG0378 HypB Ni2+-binding GTPa 98.6 2.8E-07 6.1E-12 69.6 8.8 76 125-215 120-197 (202)
336 KOG3887|consensus 98.6 1.5E-07 3.3E-12 73.1 7.5 169 52-223 27-207 (347)
337 PRK10463 hydrogenase nickel in 98.6 8.4E-08 1.8E-12 77.6 6.0 55 156-216 230-286 (290)
338 cd01855 YqeH YqeH. YqeH is an 98.6 1.9E-07 4.1E-12 71.7 7.8 97 112-218 24-124 (190)
339 KOG0448|consensus 98.6 1.3E-06 2.8E-11 76.9 13.0 147 50-202 107-310 (749)
340 KOG0467|consensus 98.6 2.9E-07 6.4E-12 81.6 8.5 115 49-168 6-136 (887)
341 COG5192 BMS1 GTP-binding prote 98.5 9.9E-07 2.1E-11 76.2 11.0 145 46-201 63-209 (1077)
342 PRK12289 GTPase RsgA; Reviewed 98.5 3.4E-07 7.4E-12 76.6 8.2 86 117-214 84-170 (352)
343 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.4E-07 7.5E-12 66.8 6.7 54 54-109 85-138 (141)
344 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.9E-07 6.2E-12 68.5 6.4 57 51-109 101-157 (157)
345 cd01854 YjeQ_engC YjeQ/EngC. 98.5 3.6E-07 7.8E-12 74.7 7.3 85 117-213 73-158 (287)
346 TIGR03348 VI_IcmF type VI secr 98.5 1.1E-06 2.3E-11 84.4 11.2 117 53-171 112-258 (1169)
347 KOG0463|consensus 98.5 1E-06 2.2E-11 72.8 9.2 149 51-206 132-346 (641)
348 COG5019 CDC3 Septin family pro 98.5 2.6E-06 5.6E-11 70.2 11.5 121 51-177 22-183 (373)
349 cd01858 NGP_1 NGP-1. Autoanti 98.5 6E-07 1.3E-11 66.7 7.2 90 119-218 5-94 (157)
350 PRK00098 GTPase RsgA; Reviewed 98.5 4.3E-07 9.3E-12 74.6 6.9 83 119-213 77-161 (298)
351 cd04178 Nucleostemin_like Nucl 98.5 4.9E-07 1.1E-11 68.3 6.4 56 51-109 116-172 (172)
352 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 5.9E-07 1.3E-11 65.6 6.3 78 118-205 7-84 (141)
353 KOG2655|consensus 98.4 5.6E-06 1.2E-10 68.6 11.5 117 51-173 20-175 (366)
354 cd01849 YlqF_related_GTPase Yl 98.4 1.5E-06 3.3E-11 64.4 7.5 82 124-217 1-83 (155)
355 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.3E-11 66.4 6.7 57 51-109 114-170 (171)
356 cd01856 YlqF YlqF. Proteins o 98.4 1.7E-06 3.7E-11 65.2 7.5 93 111-218 8-100 (171)
357 cd01851 GBP Guanylate-binding 98.3 1.1E-05 2.3E-10 63.7 11.8 86 51-136 6-105 (224)
358 KOG1143|consensus 98.3 1.2E-06 2.7E-11 72.1 6.6 151 51-206 166-376 (591)
359 KOG1487|consensus 98.3 1.4E-06 3E-11 68.6 6.3 85 51-135 58-149 (358)
360 cd01855 YqeH YqeH. YqeH is an 98.3 1.3E-06 2.7E-11 67.1 5.8 57 52-109 127-190 (190)
361 PRK12288 GTPase RsgA; Reviewed 98.3 3.4E-06 7.5E-11 70.5 8.7 86 120-214 118-203 (347)
362 KOG1547|consensus 98.3 5E-06 1.1E-10 64.7 8.5 125 51-181 45-209 (336)
363 cd01859 MJ1464 MJ1464. This f 98.3 3E-06 6.4E-11 62.8 7.2 56 51-109 100-156 (156)
364 TIGR03596 GTPase_YlqF ribosome 98.3 2.7E-06 5.9E-11 69.1 7.4 97 107-218 5-102 (276)
365 cd01849 YlqF_related_GTPase Yl 98.3 2.5E-06 5.4E-11 63.3 6.5 57 50-109 98-155 (155)
366 KOG0459|consensus 98.3 3.5E-07 7.7E-12 75.9 1.8 159 50-208 77-276 (501)
367 KOG0464|consensus 98.3 4.8E-07 1E-11 75.5 2.5 129 50-183 35-184 (753)
368 TIGR03596 GTPase_YlqF ribosome 98.2 3.3E-06 7.2E-11 68.6 7.2 56 51-109 117-173 (276)
369 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.4E-06 9.6E-11 68.3 7.4 57 51-110 120-177 (287)
370 TIGR03597 GTPase_YqeH ribosome 98.2 3.1E-06 6.7E-11 71.4 6.5 99 109-216 50-150 (360)
371 PRK09563 rbgA GTPase YlqF; Rev 98.1 6.3E-06 1.4E-10 67.4 6.6 98 106-218 7-105 (287)
372 COG1161 Predicted GTPases [Gen 98.1 6.4E-06 1.4E-10 68.3 6.3 57 51-110 131-188 (322)
373 PF03193 DUF258: Protein of un 98.1 2.4E-06 5.1E-11 63.4 3.1 59 53-112 36-100 (161)
374 COG1618 Predicted nucleotide k 98.1 6.3E-05 1.4E-09 55.3 10.3 111 51-168 4-142 (179)
375 cd03112 CobW_like The function 98.1 2.7E-05 5.9E-10 57.9 8.6 23 54-76 2-24 (158)
376 PRK12288 GTPase RsgA; Reviewed 98.1 6E-06 1.3E-10 69.1 5.4 59 54-113 207-271 (347)
377 PRK10416 signal recognition pa 98.0 6E-05 1.3E-09 62.4 10.8 138 52-208 114-300 (318)
378 PRK14974 cell division protein 98.0 3.3E-05 7.2E-10 64.3 9.2 93 98-209 222-321 (336)
379 TIGR01425 SRP54_euk signal rec 98.0 8.6E-05 1.9E-09 63.6 11.0 113 52-171 100-254 (429)
380 TIGR00064 ftsY signal recognit 98.0 0.00023 5E-09 57.7 13.0 93 97-208 153-258 (272)
381 PRK12289 GTPase RsgA; Reviewed 98.0 1.2E-05 2.7E-10 67.3 5.7 55 54-110 174-235 (352)
382 PRK14722 flhF flagellar biosyn 98.0 0.00011 2.4E-09 62.0 11.0 120 52-171 137-296 (374)
383 KOG0465|consensus 97.9 1E-05 2.3E-10 70.5 4.5 118 50-172 37-172 (721)
384 TIGR00157 ribosome small subun 97.9 2.2E-05 4.8E-10 62.7 5.8 56 52-111 120-183 (245)
385 COG3523 IcmF Type VI protein s 97.9 0.0001 2.2E-09 69.9 10.2 117 54-171 127-271 (1188)
386 TIGR03597 GTPase_YqeH ribosome 97.9 2E-05 4.4E-10 66.4 5.2 56 53-111 155-216 (360)
387 PF00448 SRP54: SRP54-type pro 97.8 0.00028 6.2E-09 54.4 10.1 109 54-171 3-155 (196)
388 cd01854 YjeQ_engC YjeQ/EngC. 97.8 4.5E-05 9.7E-10 62.4 5.6 59 53-112 162-226 (287)
389 PRK11889 flhF flagellar biosyn 97.8 0.0012 2.5E-08 56.0 13.5 150 52-220 241-430 (436)
390 COG3640 CooC CO dehydrogenase 97.8 0.00015 3.2E-09 56.6 7.6 62 100-169 135-198 (255)
391 PRK00098 GTPase RsgA; Reviewed 97.7 7.6E-05 1.6E-09 61.4 6.2 58 52-111 164-228 (298)
392 PRK13796 GTPase YqeH; Provisio 97.7 6.7E-05 1.5E-09 63.4 5.9 56 52-110 160-221 (365)
393 PRK13796 GTPase YqeH; Provisio 97.7 0.00019 4.2E-09 60.7 8.4 97 110-216 57-156 (365)
394 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00018 3.9E-09 43.4 5.8 46 120-167 11-58 (58)
395 PRK12727 flagellar biosynthesi 97.7 0.00069 1.5E-08 59.4 11.4 112 52-171 350-499 (559)
396 PRK01889 GTPase RsgA; Reviewed 97.7 0.00033 7.1E-09 59.1 9.1 83 120-214 110-192 (356)
397 cd03114 ArgK-like The function 97.7 0.00037 7.9E-09 51.3 8.2 58 98-167 91-148 (148)
398 PRK14721 flhF flagellar biosyn 97.6 0.00078 1.7E-08 57.7 11.2 113 52-171 191-341 (420)
399 KOG3859|consensus 97.6 0.00021 4.5E-09 57.1 6.9 117 50-171 40-191 (406)
400 PRK12724 flagellar biosynthesi 97.6 0.00086 1.9E-08 57.3 11.1 151 52-221 223-413 (432)
401 PRK05703 flhF flagellar biosyn 97.6 0.00088 1.9E-08 57.8 10.8 66 98-171 299-372 (424)
402 COG1162 Predicted GTPases [Gen 97.6 0.0001 2.2E-09 59.8 4.8 23 54-76 166-188 (301)
403 PRK12726 flagellar biosynthesi 97.6 0.0012 2.5E-08 55.7 11.0 24 51-74 205-228 (407)
404 PF09547 Spore_IV_A: Stage IV 97.5 0.0026 5.5E-08 54.1 11.7 25 51-75 16-40 (492)
405 cd03115 SRP The signal recogni 97.5 0.0011 2.4E-08 49.8 9.0 67 98-171 82-154 (173)
406 PRK06731 flhF flagellar biosyn 97.5 0.0021 4.5E-08 52.0 10.9 149 52-219 75-263 (270)
407 PRK00771 signal recognition pa 97.5 0.0023 5.1E-08 55.2 11.7 113 51-171 94-247 (437)
408 PRK11537 putative GTP-binding 97.4 0.0017 3.7E-08 53.9 10.1 24 52-75 4-27 (318)
409 COG0523 Putative GTPases (G3E 97.4 0.0038 8.1E-08 51.8 11.7 136 54-200 3-184 (323)
410 PRK10867 signal recognition pa 97.4 0.0017 3.8E-08 55.9 10.0 66 98-170 183-254 (433)
411 KOG0469|consensus 97.4 0.00031 6.8E-09 60.4 5.1 128 50-182 17-179 (842)
412 COG1419 FlhF Flagellar GTP-bin 97.3 0.0031 6.7E-08 53.3 10.7 112 52-171 203-353 (407)
413 KOG1424|consensus 97.3 0.00026 5.6E-09 60.9 4.3 55 52-109 314-369 (562)
414 PF05621 TniB: Bacterial TniB 97.3 0.0025 5.4E-08 51.9 9.8 103 51-165 60-189 (302)
415 PRK14723 flhF flagellar biosyn 97.3 0.0052 1.1E-07 56.4 12.5 115 53-171 186-338 (767)
416 PRK06995 flhF flagellar biosyn 97.3 0.0032 7E-08 54.9 10.7 22 53-74 257-278 (484)
417 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0032 6.9E-08 41.9 8.7 97 55-164 2-99 (99)
418 PRK12723 flagellar biosynthesi 97.2 0.012 2.6E-07 50.1 13.3 113 52-171 174-327 (388)
419 PRK10751 molybdopterin-guanine 97.2 0.0012 2.7E-08 49.7 6.4 54 51-113 5-58 (173)
420 KOG1534|consensus 97.2 0.0013 2.9E-08 50.6 6.2 82 99-184 98-192 (273)
421 PF13555 AAA_29: P-loop contai 97.1 0.00051 1.1E-08 42.4 3.0 22 54-75 25-46 (62)
422 TIGR02475 CobW cobalamin biosy 97.1 0.01 2.2E-07 49.8 11.6 23 53-75 5-27 (341)
423 PF13207 AAA_17: AAA domain; P 97.1 0.00046 9.9E-09 48.6 3.1 22 54-75 1-22 (121)
424 cd00009 AAA The AAA+ (ATPases 97.1 0.0072 1.6E-07 43.2 9.2 25 52-76 19-43 (151)
425 TIGR00959 ffh signal recogniti 97.0 0.0021 4.4E-08 55.4 7.0 66 98-170 182-253 (428)
426 PRK08118 topology modulation p 97.0 0.00063 1.4E-08 51.1 3.2 24 53-76 2-25 (167)
427 PRK07261 topology modulation p 97.0 0.00061 1.3E-08 51.4 3.1 23 53-75 1-23 (171)
428 PF13671 AAA_33: AAA domain; P 97.0 0.0006 1.3E-08 49.4 2.9 21 55-75 2-22 (143)
429 KOG2484|consensus 97.0 0.00071 1.5E-08 56.6 3.5 59 49-109 249-307 (435)
430 PF05729 NACHT: NACHT domain 97.0 0.005 1.1E-07 45.4 7.7 23 54-76 2-24 (166)
431 PF05673 DUF815: Protein of un 97.0 0.0062 1.4E-07 48.2 8.4 95 50-164 50-147 (249)
432 COG0563 Adk Adenylate kinase a 96.9 0.00079 1.7E-08 51.1 3.2 24 53-76 1-24 (178)
433 COG1162 Predicted GTPases [Gen 96.9 0.007 1.5E-07 49.3 8.3 84 120-214 77-162 (301)
434 PF00005 ABC_tran: ABC transpo 96.9 0.001 2.2E-08 47.9 3.1 25 52-76 11-35 (137)
435 KOG2485|consensus 96.8 0.0023 5E-08 52.0 5.2 59 50-108 141-205 (335)
436 COG0552 FtsY Signal recognitio 96.8 0.011 2.5E-07 48.7 8.8 150 51-219 138-336 (340)
437 cd02019 NK Nucleoside/nucleoti 96.8 0.0014 2.9E-08 41.6 2.8 21 55-75 2-22 (69)
438 PF13521 AAA_28: AAA domain; P 96.7 0.00089 1.9E-08 49.9 2.2 23 54-76 1-23 (163)
439 KOG0780|consensus 96.7 0.0042 9.1E-08 52.0 6.2 99 51-149 100-240 (483)
440 KOG0446|consensus 96.7 0.0011 2.4E-08 59.9 3.0 119 50-171 27-214 (657)
441 cd02038 FleN-like FleN is a me 96.7 0.005 1.1E-07 44.6 5.9 106 56-169 4-110 (139)
442 cd03116 MobB Molybdenum is an 96.7 0.0018 4E-08 48.1 3.7 51 54-113 3-53 (159)
443 cd02042 ParA ParA and ParB of 96.7 0.016 3.6E-07 39.5 8.1 81 55-146 2-84 (104)
444 PF03266 NTPase_1: NTPase; In 96.7 0.0016 3.4E-08 49.0 3.2 22 54-75 1-22 (168)
445 PRK14530 adenylate kinase; Pro 96.7 0.0017 3.7E-08 50.7 3.4 25 52-76 3-27 (215)
446 TIGR00235 udk uridine kinase. 96.7 0.0018 3.9E-08 50.3 3.4 26 50-75 4-29 (207)
447 COG1120 FepC ABC-type cobalami 96.6 0.0016 3.4E-08 52.1 3.0 24 53-76 29-52 (258)
448 smart00382 AAA ATPases associa 96.6 0.002 4.3E-08 45.7 3.3 27 53-79 3-29 (148)
449 cd00071 GMPK Guanosine monopho 96.6 0.0025 5.4E-08 46.2 3.9 22 55-76 2-23 (137)
450 cd04178 Nucleostemin_like Nucl 96.6 0.0031 6.7E-08 47.6 4.4 52 124-180 1-54 (172)
451 COG1116 TauB ABC-type nitrate/ 96.6 0.0017 3.7E-08 51.2 3.0 25 54-78 31-55 (248)
452 COG0541 Ffh Signal recognition 96.6 0.019 4.2E-07 48.9 9.4 99 50-148 98-238 (451)
453 KOG1424|consensus 96.6 0.0043 9.3E-08 53.7 5.5 82 110-202 163-244 (562)
454 COG1126 GlnQ ABC-type polar am 96.6 0.0026 5.7E-08 49.2 3.8 25 52-76 28-52 (240)
455 PRK14738 gmk guanylate kinase; 96.6 0.0037 8E-08 48.6 4.7 26 51-76 12-37 (206)
456 PF00004 AAA: ATPase family as 96.6 0.002 4.4E-08 45.7 3.0 22 55-76 1-22 (132)
457 cd03111 CpaE_like This protein 96.6 0.022 4.7E-07 39.2 8.1 98 58-165 6-106 (106)
458 PRK06217 hypothetical protein; 96.6 0.0021 4.5E-08 48.9 3.1 24 53-76 2-25 (183)
459 PRK08233 hypothetical protein; 96.6 0.0023 5E-08 48.3 3.3 25 52-76 3-27 (182)
460 PF13238 AAA_18: AAA domain; P 96.5 0.0021 4.5E-08 45.4 2.8 21 55-75 1-21 (129)
461 PRK03839 putative kinase; Prov 96.5 0.0023 5E-08 48.5 3.2 22 54-75 2-23 (180)
462 PRK01889 GTPase RsgA; Reviewed 96.5 0.0032 6.8E-08 53.2 4.2 24 53-76 196-219 (356)
463 COG1136 SalX ABC-type antimicr 96.5 0.0023 4.9E-08 50.2 3.0 24 53-76 32-55 (226)
464 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.0065 1.4E-07 47.6 5.6 26 51-76 37-62 (226)
465 PRK10078 ribose 1,5-bisphospho 96.5 0.0026 5.6E-08 48.6 3.2 23 54-76 4-26 (186)
466 COG4619 ABC-type uncharacteriz 96.5 0.0065 1.4E-07 45.4 5.1 25 52-76 29-53 (223)
467 PRK08727 hypothetical protein; 96.5 0.0082 1.8E-07 47.6 6.0 21 55-75 44-64 (233)
468 cd03238 ABC_UvrA The excision 96.4 0.0028 6E-08 48.0 3.1 24 51-74 20-43 (176)
469 PRK04195 replication factor C 96.4 0.0038 8.2E-08 54.9 4.4 25 52-76 39-63 (482)
470 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0026 5.7E-08 50.7 3.0 22 53-74 31-52 (254)
471 TIGR02322 phosphon_PhnN phosph 96.4 0.0026 5.5E-08 48.1 2.9 22 54-75 3-24 (179)
472 cd02036 MinD Bacterial cell di 96.4 0.086 1.9E-06 39.4 11.2 66 100-171 64-129 (179)
473 PRK14737 gmk guanylate kinase; 96.4 0.0047 1E-07 47.2 4.2 24 53-76 5-28 (186)
474 KOG4273|consensus 96.4 0.0089 1.9E-07 47.3 5.7 116 52-171 4-124 (418)
475 PF07728 AAA_5: AAA domain (dy 96.4 0.0031 6.8E-08 45.5 3.1 22 54-75 1-22 (139)
476 KOG2423|consensus 96.4 0.0017 3.7E-08 54.5 1.8 59 48-108 303-361 (572)
477 PRK14532 adenylate kinase; Pro 96.4 0.0029 6.3E-08 48.2 3.0 23 54-76 2-24 (188)
478 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0033 7.1E-08 47.7 3.3 22 53-74 4-25 (188)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0033 7.1E-08 49.1 3.3 26 51-76 29-54 (218)
480 cd01130 VirB11-like_ATPase Typ 96.4 0.0033 7.1E-08 48.0 3.2 25 52-76 25-49 (186)
481 TIGR03263 guanyl_kin guanylate 96.4 0.0032 6.9E-08 47.6 3.1 23 54-76 3-25 (180)
482 PRK05480 uridine/cytidine kina 96.4 0.0036 7.8E-08 48.6 3.4 25 51-75 5-29 (209)
483 cd02023 UMPK Uridine monophosp 96.4 0.0029 6.2E-08 48.7 2.8 21 55-75 2-22 (198)
484 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0037 8E-08 48.4 3.2 26 51-76 25-50 (205)
485 cd01129 PulE-GspE PulE/GspE Th 96.3 0.012 2.7E-07 47.5 6.4 24 53-76 81-104 (264)
486 TIGR00960 3a0501s02 Type II (G 96.3 0.0037 8E-08 48.8 3.3 26 51-76 28-53 (216)
487 cd03222 ABC_RNaseL_inhibitor T 96.3 0.0046 1E-07 46.9 3.6 26 51-76 24-49 (177)
488 PF03205 MobB: Molybdopterin g 96.3 0.0036 7.7E-08 45.6 2.9 22 54-75 2-23 (140)
489 TIGR01166 cbiO cobalt transpor 96.3 0.0039 8.5E-08 47.6 3.3 25 52-76 18-42 (190)
490 cd03225 ABC_cobalt_CbiO_domain 96.3 0.004 8.6E-08 48.4 3.3 26 51-76 26-51 (211)
491 TIGR03608 L_ocin_972_ABC putat 96.3 0.004 8.7E-08 48.1 3.3 25 52-76 24-48 (206)
492 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0039 8.5E-08 43.0 2.8 21 53-73 16-36 (107)
493 TIGR02673 FtsE cell division A 96.3 0.004 8.7E-08 48.5 3.3 26 51-76 27-52 (214)
494 cd03261 ABC_Org_Solvent_Resist 96.3 0.004 8.7E-08 49.3 3.3 26 51-76 25-50 (235)
495 COG4088 Predicted nucleotide k 96.3 0.03 6.5E-07 43.3 7.7 21 54-74 3-23 (261)
496 COG3839 MalK ABC-type sugar tr 96.3 0.0036 7.8E-08 52.1 3.0 24 54-77 31-54 (338)
497 PRK00625 shikimate kinase; Pro 96.3 0.0041 8.9E-08 46.9 3.1 22 54-75 2-23 (173)
498 PRK13949 shikimate kinase; Pro 96.3 0.0042 9.1E-08 46.7 3.2 22 54-75 3-24 (169)
499 PRK14531 adenylate kinase; Pro 96.3 0.0042 9.2E-08 47.2 3.2 24 53-76 3-26 (183)
500 cd03264 ABC_drug_resistance_li 96.3 0.0037 8.1E-08 48.6 3.0 23 54-76 27-49 (211)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.2e-32 Score=201.12 Aligned_cols=165 Identities=20% Similarity=0.271 Sum_probs=136.2
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+.++.+||+++|+.|+|||+|+.|+.++.|++ .+..|+|..... +.. +..++.+|||+||++++++...++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e--~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTE--SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcch--hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 345789999999999999999999999999999 888888866554 444 34899999999999999999999999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCccccee-EEEee
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIK-LIATQ 199 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 199 (224)
+|+||+|||+++.+||.++..|+.++..... .++|.++|+||+|+.+. ...++.+........ + |+++|
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~-------~~f~ETS 153 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI-------PIFLETS 153 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcCC-------cceeecc
Confidence 9999999999999999999999999988754 56899999999999875 333333333322111 5 99999
Q ss_pred cCCCCccccchHHHHHHHHHHh
Q psy12173 200 APSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~~ 221 (224)
|+.+.|+++.|...+.+...+.
T Consensus 154 AK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 154 AKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCccCHHHHHHHHHHHHHHhc
Confidence 9999999888887776665543
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.7e-30 Score=196.52 Aligned_cols=161 Identities=32% Similarity=0.539 Sum_probs=136.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..+||+++|+.+||||||++++..+.+.. +.||.+++...+..++..+.+||+||+++++..+..+++++|++|+|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 45799999999999999999999877643 468888888778888899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.+...++..++......+.|++|++||.|+.+....+++.+.+++.....+.+ .+++|||++|+|+++.|
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~--~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW--YIQSTCATSGEGLYEGL 170 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce--EEEeccCCCCCCHHHHH
Confidence 9999999999988888887654446799999999999988888888888887765544555 78899999999996665
Q ss_pred HHHHHH
Q psy12173 211 VVEAEQ 216 (224)
Q Consensus 211 ~~~i~~ 216 (224)
...+.+
T Consensus 171 ~~l~~~ 176 (181)
T PLN00223 171 DWLSNN 176 (181)
T ss_pred HHHHHH
Confidence 544433
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4.4e-30 Score=193.87 Aligned_cols=156 Identities=33% Similarity=0.572 Sum_probs=133.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++++|||||++++..+.+. .+.||++.....+...+..+.+|||||+++++..+..+++++|++|+|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~---~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc---cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4689999999999999999999987764 3467888777777778899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|++++.++.+..+++..+.......++|+++|+||+|+.+....+++.+.++......+.+ +++++||++|.|+++.|
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNW--YVQPSCATSGDGLYEGL 162 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcE--EEEEeeCCCCCChHHHH
Confidence 9999999999999998888754446789999999999987667788888877655444445 89999999999996655
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 163 ~ 163 (168)
T cd04149 163 T 163 (168)
T ss_pred H
Confidence 4
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=7.8e-30 Score=193.75 Aligned_cols=161 Identities=33% Similarity=0.544 Sum_probs=135.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..+||+++|++|+|||||++++..+.+. .+.||+++.......++..+.+||+||+++++..+..+++++|++|+|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV---TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 4589999999999999999999877763 3568888877777778899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++++..+++..+.......+.|+++|+||.|+.+....+++.+.++......+.+ .++++||++|.|+++.|
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW--YIQPTCATSGDGLYEGL 166 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE--EEEEeeCCCCCCHHHHH
Confidence 9999999999999999887754446789999999999987777778888777665555555 78899999999995555
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
. .+.+.
T Consensus 167 ~-~l~~~ 172 (175)
T smart00177 167 T-WLSNN 172 (175)
T ss_pred H-HHHHH
Confidence 4 44443
No 5
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=7.7e-30 Score=190.84 Aligned_cols=154 Identities=36% Similarity=0.583 Sum_probs=129.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++++|||||++++..+.+.. +.||++++...+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 489999999999999999998877653 56888887777777889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++++++++..+++..+.......+.|+++++||.|+.+....+++.+.+.......+.+ .++++||++|+|+++.|.
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW--YIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE--EEEEeeCCCCCCHHHHHH
Confidence 99999999999898887654445789999999999977656666666665444434444 789999999999965543
No 6
>KOG0092|consensus
Probab=99.97 E-value=1.3e-30 Score=192.46 Aligned_cols=158 Identities=21% Similarity=0.293 Sum_probs=131.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....|++++|+.++|||||+-|+..+.|.+ ...+|+| |-...+...+ +++.+|||+|+++|.++-..+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e--~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHE--NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccc--ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 356899999999999999999999999998 6788888 4455555544 899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||+++.+||.....|+.++..+.. ++.-+.+|+||+|+.+ ....+|.....+.... .|+++|||+|
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-------l~~ETSAKTg 152 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGL-------LFFETSAKTG 152 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-------EEEEEecccc
Confidence 9999999999999999999999988754 5566778999999987 3555555555543322 8999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+.+.
T Consensus 153 ~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKL 166 (200)
T ss_pred cCHHHHHHHHHHhc
Confidence 99977776655544
No 7
>KOG0078|consensus
Probab=99.97 E-value=5e-30 Score=192.66 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=135.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..+||+++|++++|||+++.++..+.|.. .+..|++..+. .+..++ +.+++|||.||++++.+...++++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcC--CccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 44678999999999999999999999999988 77778775544 455544 7899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++++|||+++..||+++..|+..+-.+.. .++|.++|+||+|+.+. ...+..++... ..++.|+|+||+
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-------e~G~~F~EtSAk 157 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-------EYGIKFFETSAK 157 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-------HhCCeEEEcccc
Confidence 999999999999999999998888766643 58999999999999874 22332222221 112399999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|.||++.|..++++.+.++
T Consensus 158 ~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999888654
No 8
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.3e-29 Score=192.33 Aligned_cols=162 Identities=31% Similarity=0.526 Sum_probs=135.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|++++|||||++++..+.+.. +.||.+++...+...+..+.+|||||+++++..+..+++.+|++|+|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 5799999999999999999998877653 4578888777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++++.....++..+.......++|+++++||.|+.+....+++...++......+.+ .++++||++|.|+++.|.
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~--~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW--YIQGCCATTAQGLYEGLD 171 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE--EEEeeeCCCCCCHHHHHH
Confidence 999999999988888887654445789999999999987767777777777654444444 788999999999966666
Q ss_pred HHHHHHH
Q psy12173 212 VEAEQAM 218 (224)
Q Consensus 212 ~~i~~~l 218 (224)
..+....
T Consensus 172 ~l~~~i~ 178 (182)
T PTZ00133 172 WLSANIK 178 (182)
T ss_pred HHHHHHH
Confidence 5444433
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=3.3e-29 Score=192.15 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=127.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||||+.++..+.|.. .+.++.+. ....+..++ ..+.+|||+|++++..++..+++++|+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTES--PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 356899999999999999999999988876 45555553 334455554 788999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++++++++++..|+..+.... ++.|++||+||.|+.+. ...++..+..+. .. ++|++|||++|
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----~~--~~~~e~SAk~g 152 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----NG--MTFFEVSPLCN 152 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----cC--CEEEEecCCCC
Confidence 999999999999999999999986543 58999999999999753 344444444421 22 38999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.||++.|...+..++.
T Consensus 153 ~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 153 FNITESFTELARIVLM 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9997777766665554
No 10
>KOG0098|consensus
Probab=99.97 E-value=1.6e-29 Score=185.48 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=134.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.+|+.++|+.|+|||+|+.|++++.|.+ ....|+|.. ...+.+ +.+++++|||+|++++++....+++.+.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~--~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQP--VHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccc--cccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 467899999999999999999999999999 555676643 444444 45899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||+++.++|..+..|+.++.++.. ++.-+++++||+||... .+.+|.+...+... -.|.++||+++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-------LifmETSakt~ 153 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-------LIFMETSAKTA 153 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHHHHHHcC-------ceeehhhhhhh
Confidence 9999999999999999999999998753 68899999999999765 33444433332211 17889999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
+|++|.|.+...+++.+.
T Consensus 154 ~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 154 ENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999988887777654
No 11
>KOG0094|consensus
Probab=99.97 E-value=2.2e-29 Score=186.13 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=129.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..|++++|+.++|||||+.|+..+.|.. .|.+|+|.++. .+...+ +.+.+|||+|||+|+.+...+++++.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~--~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcc--cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45899999999999999999999999999 88889885544 455544 7899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|||+++..||++..+|+..+..+....++-+++|+||.||.++......+-. .+.+..++.|+++||+.|+||
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-----~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-----RKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-----HHHHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999977556889999999999887222111111 111333448999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
. .++.-|..++
T Consensus 174 k-~lFrrIaa~l 184 (221)
T KOG0094|consen 174 K-QLFRRIAAAL 184 (221)
T ss_pred H-HHHHHHHHhc
Confidence 5 4444444443
No 12
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=5.2e-29 Score=188.76 Aligned_cols=156 Identities=43% Similarity=0.698 Sum_probs=130.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+ . .+.+|.++....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~--~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-D--TISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-C--CcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 457999999999999999999998754 3 4667888888788888899999999999999988888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.+...++..++......+.|+++++||+|+.+....+++.+.++........+ +++++||++|.|+++.|
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHW--RIQPCSAVTGEGLLQGI 167 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCce--EEEeccCCCCcCHHHHH
Confidence 9999999999888888887654446899999999999987766777777776543222333 89999999999996554
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 168 ~ 168 (173)
T cd04154 168 D 168 (173)
T ss_pred H
Confidence 4
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=9e-29 Score=191.52 Aligned_cols=158 Identities=16% Similarity=0.256 Sum_probs=124.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.|+++|+.|+|||||++++..+.|.. .+.+|++ +....+..++ ..+.+|||+|+++++.++..+++++|++|+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 68999999999999999999999887 6667765 4444566654 7889999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
||++++++++++..|+..+... ...+.|+++|+||+|+.+. ...++..+..+.. .. +.|++|||++|.|++
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----~~--~~~~etSAktg~gV~ 152 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----TG--MRFCEASAKDNFNVD 152 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhc----CC--CEEEEecCCCCCCHH
Confidence 9999999999999888766443 3357999999999999643 2333332222110 12 289999999999998
Q ss_pred cchHHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMYA 220 (224)
Q Consensus 208 ~~~~~~i~~~l~~ 220 (224)
+.|...+...+.+
T Consensus 153 e~F~~l~~~~~~~ 165 (202)
T cd04120 153 EIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHHh
Confidence 8887776665543
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.3e-28 Score=186.03 Aligned_cols=161 Identities=31% Similarity=0.522 Sum_probs=131.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|++++|||||++++.+..+. .+.||.+.....+..++..+.+|||||+++++..+..+++.+|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 6899999999999999999998654 3567888877777888899999999999999998888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEeecCCCCccccchHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
+++++.+...|+..+.......+.|+++++||.|+.+....+++.+.++.... ..+.+ .+++|||++|.|+++.|.
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~~~f~- 154 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSW--YIQGCDARSGMGLYEGLD- 154 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcE--EEEeCcCCCCCCHHHHHH-
Confidence 99999999999999987644456899999999999877677777776654332 12233 789999999999966555
Q ss_pred HHHHHHHH
Q psy12173 213 EAEQAMYA 220 (224)
Q Consensus 213 ~i~~~l~~ 220 (224)
.+.+.+..
T Consensus 155 ~l~~~~~~ 162 (169)
T cd04158 155 WLSRQLVA 162 (169)
T ss_pred HHHHHHhh
Confidence 44444443
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=3.8e-29 Score=190.87 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...+||+++|++++|||||++++..+.|.. .+.||++..+. .+..+ ...+.+|||+|++++..++..+++++|++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 356799999999999999999999999887 77888774433 34443 37899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
|+|||++++++|+++ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-------~~ 151 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK-------QI 151 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-------Hc
Confidence 999999999999997 67777776543 57899999999998642 22333333221 12
Q ss_pred c-eeEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 192 R-IKLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~-~~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
+ ++|++|||++|.| |++.|..++..++
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 2 2899999999998 9887777766544
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=2.3e-28 Score=185.17 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++..+.|+. .+.+|++..+. .+..++ ..+.+|||||+++++.++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 3699999999999999999999999887 67778774443 344544 679999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+ .. +++|++|||++|.|+
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~--~~~~~e~Sa~~~~~v 152 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EF--NCPFFETSAALRHYI 152 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----Hh--CCEEEEEecCCCCCH
Confidence 9999999999999887766655433357999999999998654 33333332221 12 249999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.|...+.+.+.
T Consensus 153 ~~~f~~l~~~~~~ 165 (172)
T cd04141 153 DDAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766554
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.3e-28 Score=186.86 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++++|||||+.++..+.|.. .+.||++..+. .+..+ ..++.+|||+|+++++.++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 589999999999999999999999987 77888864433 23443 37899999999999999998899999999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC------------CCHHHHHhhcCcccccCcccce-eE
Q psy12173 130 VDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA------------LSAEEVGVALDLSSISSRQHRI-KL 195 (224)
Q Consensus 130 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (224)
||+++++||+++ ..|+..+.... .+.|+++|+||+|+.+. ...++..+..+ ..++ .|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-------~~~~~~~ 150 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-------QIGAAAY 150 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-------HcCCCEE
Confidence 999999999998 57888776543 47999999999999653 22222222221 1122 69
Q ss_pred EEeecCCCCccccchHHHHHHHHHHh
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++|||++|.||++.|...+. .+.++
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~-~~~~~ 175 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIK-VVLQP 175 (176)
T ss_pred EECCCCcccCHHHHHHHHHH-HHhcC
Confidence 99999999999666665554 44443
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.1e-28 Score=189.96 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=121.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|+.++|||||+.++..+.|.. .+.||.+..+. .+..+ ...+.+|||+|+++++.++..+++++|++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 45799999999999999999999999887 77888875443 23333 378999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCccc--------ccCcccceeEEE
Q psy12173 128 FVVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSS--------ISSRQHRIKLIA 197 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~ 197 (224)
+|||+++++||+++.. |+..+.... .+.|+++|+||.|+.+... .+++.+ ..... +..+...++|++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999975 555554432 5799999999999975422 111111 11000 000111138999
Q ss_pred eecCCCCccccchHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l 218 (224)
|||++|.|+++.|...+..++
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHh
Confidence 999999999777776665544
No 19
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.6e-28 Score=182.53 Aligned_cols=154 Identities=36% Similarity=0.588 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+|+++|++++|||||++++.+..+ .. .+.||.++....+...+..+.+|||||++++...+..+++++|++++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ--IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc--eecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998763 44 567888877777777889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 133 ADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
+++.++.....++..+..... ..++|+++|+||+|+.+....+++.+.++........+ +++++||++|.|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~--~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPW--HIFASNALTGEGLDEGV 156 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceE--EEEEeeCCCCCchHHHH
Confidence 999999888888887766432 24799999999999987666666666665543322333 79999999999995555
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 157 ~ 157 (162)
T cd04157 157 Q 157 (162)
T ss_pred H
Confidence 4
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=2.5e-28 Score=183.78 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.|.. .+.+|.+.... .+..+ ...+.+|||||++++...+..+++++|++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3799999999999999999999998877 66677765443 34444 367899999999999999988999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... ...++..+..+. . ++++++|||++|.|
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~~~ 151 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----N--GLLFLECSAKTGEN 151 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCcCHHHHHHHHHH-----c--CCEEEEEECCCCCC
Confidence 99999999999999999888765432 56899999999999764 333444433321 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.|...+.+.+
T Consensus 152 i~e~f~~l~~~~~ 164 (166)
T cd04122 152 VEDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHHh
Confidence 9777776666554
No 21
>KOG0394|consensus
Probab=99.96 E-value=2.4e-29 Score=184.21 Aligned_cols=163 Identities=25% Similarity=0.289 Sum_probs=136.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||.++|++|+|||||++++..++|.. .+..|++ |-.+.+.+++ +.+.+|||+|+++|.++...+++++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~--qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ--QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH--HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 456899999999999999999999999998 7777777 5556666655 789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++|||+++++||+++..|..+++.+.. +...|+||++||.|+... .+.+...+.+.- ++ +.+|+|+
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s----~g--nipyfEt 158 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS----KG--NIPYFET 158 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh----cC--CceeEEe
Confidence 9999999999999999999999998754 345799999999999662 333444444432 12 2399999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
|||.+.||+++|...+.++|..
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccccHHHHHHHHHHHHHhc
Confidence 9999999999999998888864
No 22
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.7e-28 Score=183.42 Aligned_cols=154 Identities=36% Similarity=0.618 Sum_probs=130.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
|+++|++|+|||||++++.++.+.. .+.||.++....+...+..+.+||+||+++++..+..+++++|++++|+|.++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~--~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE--SVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc--cccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 7999999999999999999988776 77888888777777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCC------CCccc
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPS------NLHHL 207 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gv~ 207 (224)
+.++.....|+..+.... .++|+++|+||.|+......+++.+.++...+.. ..+ .+++|||++ ++||+
T Consensus 80 ~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 80 SERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW--ILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce--EEEEeeecCCCChhHHHHHH
Confidence 999999988888886543 5899999999999988777777776666555432 344 899999998 99997
Q ss_pred cchHHHH
Q psy12173 208 HVSVVEA 214 (224)
Q Consensus 208 ~~~~~~i 214 (224)
+.|...+
T Consensus 156 ~~~~~~~ 162 (164)
T cd04162 156 DLLSQLI 162 (164)
T ss_pred HHHHHHh
Confidence 6665443
No 23
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5.2e-28 Score=183.52 Aligned_cols=156 Identities=33% Similarity=0.536 Sum_probs=130.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
..+|+++|++|+|||||++++..+.+.. +.+|.+.+...+.+++..+.+||+||++++...+..+++++|++++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 4699999999999999999999888664 4678887777888888999999999999999999889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++++.....++..+.......++|+++++||+|+.+....+++.+.+.........+ ++++|||++|.|+++.+.
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~--~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW--HIQGCCALTGEGLPEGLD 169 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEecccCCCCCHHHHHH
Confidence 999999988888888887664446799999999999987666777777665443333344 899999999999955544
Q ss_pred H
Q psy12173 212 V 212 (224)
Q Consensus 212 ~ 212 (224)
.
T Consensus 170 ~ 170 (174)
T cd04153 170 W 170 (174)
T ss_pred H
Confidence 3
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=2.6e-28 Score=185.34 Aligned_cols=158 Identities=19% Similarity=0.238 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|+. .+.||++..+. .+..++ ..+.+|||+|++++...+..+++++|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 689999999999999999999999877 77888875444 344544 7888999999999999888899999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc-----------ccCcccceeEEE
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS-----------ISSRQHRIKLIA 197 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 197 (224)
||++++++++++.. |+..+.... .+.|+++|+||.|+.+... ..+.+.... .......+.|++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999999975 555554432 5789999999999865411 111111000 000111138999
Q ss_pred eecCCCCccccchHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~ 217 (224)
|||++|.|+++.|...+..+
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999977777666543
No 25
>KOG0080|consensus
Probab=99.96 E-value=1e-28 Score=176.99 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=136.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||||+-++..+.|.. ....|+| |..+.+.++ +.++-+|||+|+++|+.+...+++++.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~--~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD--LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc--cCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 467999999999999999999999999988 5555565 556667664 4789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++.+++|..+..|+.++-.+..-++...++|+||+|...+ .+.+|-.+.. +.++|-|++|||++.
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-------r~h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-------RKHRCLFIECSAKTR 159 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-------HhhCcEEEEcchhhh
Confidence 9999999999999999999999988766567888999999998743 3444443333 334458999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
+||...|.+.+.++++-
T Consensus 160 ~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 160 ENVQCCFEELVEKIIET 176 (209)
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999888888763
No 26
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.6e-28 Score=185.76 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|+. .+.||++..+. .+..+ ...+.+|||+|++.+......+++++|++|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE--TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC--CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 689999999999999999999999887 77788764432 34443 37899999999999999888899999999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCcccce-
Q psy12173 130 VDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQHRI- 193 (224)
Q Consensus 130 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~- 193 (224)
||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-------~~~~~ 150 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-------QLGAE 150 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-------HhCCC
Confidence 999999999996 67777776543 57899999999999642 22222222221 1122
Q ss_pred eEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 194 KLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 194 ~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
+|++|||++|+| +++.|...++..+
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHHHh
Confidence 799999999995 9887877776444
No 27
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=4.3e-28 Score=182.64 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+.......+ ....+.+|||+|++.+...+..++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 489999999999999999999888776 667787766555433 34789999999999988888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++++++..+..|+..+.... .++|+++|+||+|+.......+..+..+ ... ++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~--~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----KKN--LQYYEISAKSNYNFEK 149 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH-----HcC--CEEEEEeCCCCCChHH
Confidence 999999999999998988887764 3899999999999974432222222111 122 3899999999999966
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.|...+.+++
T Consensus 150 ~f~~l~~~~~ 159 (166)
T cd00877 150 PFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=9.4e-28 Score=182.82 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=125.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC------------CeEEEEEEcCCchhHHHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG------------EYTLNIFELGGQENVRRFW 116 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~l~D~~G~~~~~~~~ 116 (224)
+.+||+++|++|+|||||++++..+.|.. .+.+|.+.... .+.+. ...+.+|||||++++...+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 46899999999999999999999999887 66777764333 33332 3789999999999999999
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCccccee
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
..+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+..+. .+++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~ 153 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-------YGIP 153 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-------cCCe
Confidence 9999999999999999999999999999888876544457899999999999653 333343333321 1238
Q ss_pred EEEeecCCCCccccchHHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++++||++|.|+++.|...+...+.
T Consensus 154 ~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 154 YFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999996666655554443
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=8.2e-28 Score=186.56 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+..+ ..+..+ ...+.+|||||++++...+..+++++|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~--~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ--HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 489999999999999999999998877 6778877443 344444 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCC--CCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVP--GALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|+|++++++++.+..|+..+.... ...++|+++|+||.|+. .....++..+..+... . +.+++|||++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~--~~~~e~Sak~ 152 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----F--IGWFETSAKE 152 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----C--ceEEEEeCCC
Confidence 9999999999999988887765432 22578999999999997 3345555555443211 1 2899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+...+.
T Consensus 153 ~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 153 GINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99997776666655544
No 30
>KOG0073|consensus
Probab=99.96 E-value=8.8e-28 Score=172.73 Aligned_cols=165 Identities=42% Similarity=0.685 Sum_probs=149.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|..|+||||++++|.+.. .. ...||.+|+.....+++..+.+||.+|+...++.|.+|++++|++|||+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~--~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TD--TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-cc--ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 47899999999999999999999887 44 7789999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEeecCCCCccccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
|.+++.++++..+.+..++......+.|+++++||.|+......+++...++++.. +...| +++-|||.+|+++.+.
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~--~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW--RLVKCSAVTGEDLLEG 169 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc--eEEEEeccccccHHHH
Confidence 99999999999999999998877788999999999999999999999999998877 55666 9999999999999776
Q ss_pred hHHHHHHHHHH
Q psy12173 210 SVVEAEQAMYA 220 (224)
Q Consensus 210 ~~~~i~~~l~~ 220 (224)
+.-.+.+.+.+
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 31
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.3e-27 Score=180.23 Aligned_cols=147 Identities=36% Similarity=0.565 Sum_probs=127.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|+++|++|+|||||++++.+. +.. .+.||.++....+..++..+.+||+||++.++..+..+++++|++++|+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~--~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPK--KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCc--cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999977 555 6778989888888888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCCC
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPSN 203 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 203 (224)
+++++.+...++..+.......++|+++|+||.|+.+.....++.+.+++..... ....+.+++|||++|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 9999999999999988765446899999999999998887888888877665432 223348999999998
No 32
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.1e-27 Score=178.88 Aligned_cols=153 Identities=37% Similarity=0.624 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|++++|||||++++..+.+.. +.+|++++...+.+.+..+.+|||||++++...+..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 68999999999999999998877543 467888777777778899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++.++.....++..+.+.....++|+++++||+|+.+.....++.+.+.........+ +++++||++|.|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTW--SIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcE--EEEEeeccCCCCHHHHHH
Confidence 9888877777777776654445799999999999976655566665554333322333 899999999999955444
No 33
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=4.7e-28 Score=185.03 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|+.|+|||||++++..+.|.. .+.||.+.+. ..+..++ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 489999999999999999999999887 7788887554 3455554 789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH---HHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE---EVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
|+|++++++++++..|+..+..... ...| ++|+||+|+.+....+ ...+..+ ... ...++++++|||++|.|
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~--~~a-~~~~~~~~e~SAk~g~~ 153 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQAR--KYA-KAMKAPLIFCSTSHSIN 153 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHH--HHH-HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888876432 3456 6889999996432111 1111100 000 11123899999999999
Q ss_pred cccchHHHHHHH
Q psy12173 206 HLHVSVVEAEQA 217 (224)
Q Consensus 206 v~~~~~~~i~~~ 217 (224)
+++.|...+...
T Consensus 154 v~~lf~~l~~~l 165 (182)
T cd04128 154 VQKIFKIVLAKA 165 (182)
T ss_pred HHHHHHHHHHHH
Confidence 966665444443
No 34
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=1e-27 Score=187.74 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++++|||||++++..+.|.. +.+|++.......+....+.+|||+|++.+...+..+++++|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 489999999999999999999999864 35777766665566778899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---------------------CCHHHHHhhcCcccc-----
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---------------------LSAEEVGVALDLSSI----- 186 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---------------------~~~~~~~~~~~~~~~----- 186 (224)
++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+....
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 99999999999998887643 257899999999999651 222333332211000
Q ss_pred --cCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 187 --SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 187 --~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
......++|++|||++|.||++.|...+..++.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000112489999999999997777776666554
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.3e-27 Score=180.03 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=124.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++.+..|.. .+.+|.+... ..+...+ ..+.+||+||++.+...+..+++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP--SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCc--ccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 46899999999999999999999999887 6677766443 3444444 6889999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+.+|+..+.... ..+.|+++++||+|+.+. ...++..+..+. . +++++++||++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 151 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----Y--GIKFLETSAKANI 151 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCC
Confidence 99999999999999999888887642 257899999999999754 233343333321 1 2389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+.+.
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9966665554444
No 36
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.2e-27 Score=188.45 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|++|+|||||++++..+.|.. .+.||++..+. .+..+ .+.+.+|||+|++.+..+...+++++|+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46799999999999999999999999888 77888764443 23343 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCcccc
Q psy12173 128 FVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 128 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 192 (224)
+|||++++++|... ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..+
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~-------~~~ 160 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK-------QLG 160 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH-------HcC
Confidence 99999999999985 67777776543 47899999999998642 23333333332 122
Q ss_pred e-eEEEeecCCCC-ccccchHHHHHHHHHH
Q psy12173 193 I-KLIATQAPSNL-HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 193 ~-~~~~~Sa~~~~-gv~~~~~~~i~~~l~~ 220 (224)
+ .|++|||++|. |+++.|...+...+.+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 3 59999999998 7988887777666553
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=9.6e-28 Score=184.43 Aligned_cols=162 Identities=18% Similarity=0.157 Sum_probs=126.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..+||+++|++|+|||||++++.++.|.. .+.+|.+..+. .+..+ ...+.+|||||++++..++..+++.+|++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 346899999999999999999999998876 66677764443 33443 36788999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++++...|+..+.......+.|+++++||+|+.+. ...++.....+. .. ++++++||++|.
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-----~~--~~~~e~Sak~~~ 153 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-----FG--IPFLETSAKQRV 153 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----hC--CEEEEeeCCCCC
Confidence 999999999999999999888876544457899999999998654 233333222211 11 289999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+++.|...+......
T Consensus 154 gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 154 NVDEAFYELVREIRKY 169 (189)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9977666665554443
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=8e-28 Score=188.43 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||+.++..+.|+. .+.||++.++. .+..+ ...+.+|||+|++.|...+..+++++|++|+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 689999999999999999999999888 78888875543 34443 47899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCcccceeE
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
||++++++++++..+|....... .++.|++||+||+|+.... ..++..... +....++|
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a------k~~~~~~y 152 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA------KQVGAVSY 152 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH------HHcCCCEE
Confidence 99999999999976665544432 2679999999999996531 111111111 11112389
Q ss_pred EEeecCCCCc-cccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLH-HLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~g-v~~~~~~~i~~~l~~ 220 (224)
+||||+++.| |++.|..++...+.+
T Consensus 153 ~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 153 VECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred EEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 9999999985 988888777766653
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.8e-28 Score=188.36 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=127.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++|+|||||++++..+.|.. .+.+|++.......+ ....+.+|||+|++++..++..+++++|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCC--ccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 567899999999999999999999998887 778888866554433 34799999999999999999889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|||+++++++..+..|+..+.... .+.|+++|+||+|+.... ..+++ +... .. .++|++|||++|.
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~-----~~--~~~~~e~SAk~~~ 158 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-----KK--NLQYYEISAKSNY 158 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHH-----hc--CCEEEEcCCCCCC
Confidence 999999999999999999988887653 579999999999996432 22222 2111 12 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...+.+.+.
T Consensus 159 ~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 159 NFEKPFLYLARKLAG 173 (219)
T ss_pred CHHHHHHHHHHHHHc
Confidence 998888776666653
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.9e-27 Score=178.52 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|++... ..+..+ ...+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 689999999999999999999888776 5667776433 234444 46778999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++.++++...+|+..+.......+.|+++++||+|+.+. ...++..+..+ ..+++++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-------QWGCAFLETSAKAKINVN 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-------HhCCEEEEeeCCCCCCHH
Confidence 999999999999999999887655568999999999999754 22333222211 111389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.|...
T Consensus 153 ~~~~~l 158 (164)
T cd04175 153 EIFYDL 158 (164)
T ss_pred HHHHHH
Confidence 555543
No 41
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=3.8e-27 Score=180.21 Aligned_cols=164 Identities=32% Similarity=0.448 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-----CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-----GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+||+++|++|||||||++++....+.. . .||.++....... .+..+.+|||||++++...+..+++.+|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--T-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--c-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence 5799999999999999999999888764 3 4666655544333 457899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|+|+++++++.....++..+.......++|+++++||+|+.+....+++.+.++...... ...++++++||++|.|+
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSA-STPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCC-CCceEEEEeecccCCCH
Confidence 99999999988888888888777654445799999999999987666666666665432211 11237899999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+...+...+.
T Consensus 159 ~~l~~~l~~~l~~ 171 (183)
T cd04152 159 QEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555544443
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=3e-27 Score=178.71 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=121.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|++|+|||||++++..+.|.. .+.+|++..+ ..+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 79999999999999999999999887 7778877544 3344443 6899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+++++++.....|+..+.........|+++|+||.|+.+... .++..+..+ ..+++++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-------EMQAEYWSVSALSGEN 152 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-------HcCCeEEEEECCCCCC
Confidence 99999999999999998887664434578999999999965422 111111111 1113899999999999
Q ss_pred cccchHHHHHHHHHHh
Q psy12173 206 HLHVSVVEAEQAMYAL 221 (224)
Q Consensus 206 v~~~~~~~i~~~l~~~ 221 (224)
+++.|. .+.+.+..|
T Consensus 153 v~~lf~-~l~~~~~~~ 167 (170)
T cd04108 153 VREFFF-RVAALTFEL 167 (170)
T ss_pred HHHHHH-HHHHHHHHc
Confidence 955444 444444443
No 43
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.1e-27 Score=181.83 Aligned_cols=156 Identities=43% Similarity=0.696 Sum_probs=140.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
....+|+++|..+|||||+++++..+.+. ...||.+++...+.+++..+.+||++|+..++..|..+++.+|++|||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~---~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS---ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE---EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc---ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 45789999999999999999999987633 467899999999999999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-CcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-SRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|.++.+.+.+..+.+..++......+.|+++++||.|+.+....+++.+.+++.... .+.+ .++.|||.+|+|+.+
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~--~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPW--SVFSCSAKTGEGVDE 166 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCE--EEEEEBTTTTBTHHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCce--EEEeeeccCCcCHHH
Confidence 9999999999999999999987666789999999999999999999999999887765 4555 899999999999954
Q ss_pred ch
Q psy12173 209 VS 210 (224)
Q Consensus 209 ~~ 210 (224)
.+
T Consensus 167 ~l 168 (175)
T PF00025_consen 167 GL 168 (175)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=1.7e-27 Score=178.29 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|++ .....+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 699999999999999999999988776 5666665 2333444544 6788999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|++++++++....|+..+.......+.|+++++||+|+.+. ...++.....+ .++++++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-------QWGCPFYETSAKSKINVD 152 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-------HcCCeEEEecCCCCCCHH
Confidence 999999999999999888877654467999999999999653 22222222211 111389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.|...
T Consensus 153 ~l~~~l 158 (163)
T cd04136 153 EVFADL 158 (163)
T ss_pred HHHHHH
Confidence 555433
No 45
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.1e-27 Score=175.57 Aligned_cols=154 Identities=36% Similarity=0.621 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|.+|+|||||++++.+..+ . .+.+|.++....+.+.+..+.+||+||++.+...+..+++.+|++++|+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999883 3 4677888888888888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
+++++.....++..+.......+.|+++++||+|+......++..+.++........+ +++++||++|.|+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRW--HIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcE--EEEEeeCCCCCCHHHHHHH
Confidence 9999999999998888765556899999999999988766777777765432222333 8999999999999555443
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=3.8e-27 Score=176.94 Aligned_cols=155 Identities=22% Similarity=0.279 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 489999999999999999999999887 67777775443 34443 4789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCC----CCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRL----STVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|+|.+++++++....|+..+...... .+.|+++|+||+|+.++ ...++....... .. ++++++||++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~ 151 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-----KG--FKYFETSACT 151 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-----cC--CeEEEEECCC
Confidence 99999999999999988888765432 46899999999999742 334443332211 11 3899999999
Q ss_pred CCccccchHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQ 216 (224)
Q Consensus 203 ~~gv~~~~~~~i~~ 216 (224)
|.|+++.+...+..
T Consensus 152 ~~gi~~l~~~l~~~ 165 (168)
T cd04119 152 GEGVNEMFQTLFSS 165 (168)
T ss_pred CCCHHHHHHHHHHH
Confidence 99996665554444
No 47
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=6.6e-27 Score=179.74 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=131.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.+..+. .+.+|.+.....+.+++..+.+||+||++.+...+..+++++|++++|+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4579999999999999999999988753 4567777777788888899999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC---------cccceeEEEeecC
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS---------RQHRIKLIATQAP 201 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~ 201 (224)
|+++.+++.....++..+.......+.|+++++||+|+.+....+++.+.++...... ....+++++|||+
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVV 174 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEec
Confidence 9999999998888999888765446799999999999987777888888776533211 1222489999999
Q ss_pred CCCccccchHH
Q psy12173 202 SNLHHLHVSVV 212 (224)
Q Consensus 202 ~~~gv~~~~~~ 212 (224)
+|+|+++.|..
T Consensus 175 ~~~gv~e~~~~ 185 (190)
T cd00879 175 KRQGYGEAFRW 185 (190)
T ss_pred CCCChHHHHHH
Confidence 99999555543
No 48
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4e-27 Score=175.90 Aligned_cols=153 Identities=38% Similarity=0.639 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+|+++|++|+|||||++++.++.+.. ..+|.++....+.. ....+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT---TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc---ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988654 35777777666665 357899999999999999888889999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCCCCccccchH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++.++.....++..++......+.|+++++||+|+......+++...++...... .. +++++|||++|.|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD--WYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCc--EEEEecccccCCChHHHHH
Confidence 99999999999998887765446899999999999977666677766655432221 23 3799999999999955443
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.3e-27 Score=177.52 Aligned_cols=158 Identities=30% Similarity=0.558 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS----LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+|+++|++|+|||||++++...... ....+.+|.+.+...+.+++..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999865422 112456777877778888889999999999999999888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++++||+|+......++..+.++..........++++++||++|.|+++.
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999988998888888887765456899999999999988766666666654332111112248999999999999554
Q ss_pred hH
Q psy12173 210 SV 211 (224)
Q Consensus 210 ~~ 211 (224)
+.
T Consensus 161 ~~ 162 (167)
T cd04160 161 IE 162 (167)
T ss_pred HH
Confidence 43
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=6.5e-27 Score=175.93 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|.+. ....+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 4799999999999999999999998877 55566553 444455544 57899999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++.++.+|+..+.... ..+.|+++++||.|+... ...++.....+. ++++++++||++|+|
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~ 151 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-------LGIPFLETSAKNATN 151 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCcC
Confidence 9999999999999999988876643 257899999999998654 233333333321 123899999999999
Q ss_pred cccchHHHHHH
Q psy12173 206 HLHVSVVEAEQ 216 (224)
Q Consensus 206 v~~~~~~~i~~ 216 (224)
+++.|...+..
T Consensus 152 v~~~~~~i~~~ 162 (166)
T cd01869 152 VEQAFMTMARE 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 96666554443
No 51
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=6.7e-27 Score=179.01 Aligned_cols=155 Identities=32% Similarity=0.543 Sum_probs=131.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.++|+++|.+|+|||||++++.++.+.. +.||.+.....+..++.++.+||+||++.++..+..++.++|++++|+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4799999999999999999999887543 4567777777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-------cccceeEEEeecCCCC
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-------RQHRIKLIATQAPSNL 204 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~ 204 (224)
+++++++.....++..+.......++|+++++||.|+......+++.+.+++..... +.+ .+++|||++|.
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~--~i~~~Sa~~~~ 171 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPL--EVFMCSVVRRM 171 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCcee--EEEEeecccCC
Confidence 999999988888888887654446799999999999988888889998887654321 344 89999999999
Q ss_pred ccccchH
Q psy12173 205 HHLHVSV 211 (224)
Q Consensus 205 gv~~~~~ 211 (224)
|+++.+.
T Consensus 172 g~~~~~~ 178 (184)
T smart00178 172 GYGEGFK 178 (184)
T ss_pred ChHHHHH
Confidence 9954443
No 52
>KOG0079|consensus
Probab=99.95 E-value=9.6e-28 Score=169.75 Aligned_cols=156 Identities=23% Similarity=0.312 Sum_probs=128.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++.+++|++|+|||+|+.++.++.|.. .|..|+|. ....+.+ +.+++.||||+|+++++.+...++++.++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~--sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSG--SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccccc--ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 345788999999999999999999999998 77777774 4444555 34899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+++|||+++.+||.+..+|+.++.++. ...|-++|+||.|.++.. +...+...+++ .++++||
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi----------e~FETSa 151 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI----------ELFETSA 151 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCc----------hheehhh
Confidence 999999999999999999999998765 589999999999998752 22333344433 8999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
+.++|++..|.-...+.+.
T Consensus 152 Ke~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 152 KENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhcccchHHHHHHHHHHHH
Confidence 9999996666554444443
No 53
>KOG0087|consensus
Probab=99.95 E-value=1.3e-27 Score=178.94 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=138.3
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+.++.+||+++|++++|||-|+.|+..+.|.. ...+|+|..... +.++ .++..+|||+||++|+.....+++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~--~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCc--ccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 345788999999999999999999999999999 777888855444 4444 4889999999999999999999999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+.++|||+++..+|+++..|+.++..+.. .++++++|+||+||.+. ...++.+...+.... .|+++||
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-------~f~EtSA 158 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-------FFLETSA 158 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcCc-------eEEEecc
Confidence 9999999999999999999999999988765 68999999999999773 334444444432222 8999999
Q ss_pred CCCCccccchHHHHHHHHHHhh
Q psy12173 201 PSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
..+.|+++.|...+..++...+
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 9999999888777777766543
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=6.2e-27 Score=174.75 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.++++.. .+.+|.+.. ...+..++ ..+.+|||+|++++...+..+++.+|++++|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 589999999999999999999998776 666766633 33344444 5688999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|+++.+++.+...|+..+.......+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----Y--GIPYIETSAKTRQGVEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----h--CCeEEEecCCCCCCHHH
Confidence 999999999999888888877654468999999999999764 223333333211 1 23899999999999965
Q ss_pred chHHHH
Q psy12173 209 VSVVEA 214 (224)
Q Consensus 209 ~~~~~i 214 (224)
.|...+
T Consensus 153 l~~~l~ 158 (162)
T cd04138 153 AFYTLV 158 (162)
T ss_pred HHHHHH
Confidence 554433
No 55
>KOG0093|consensus
Probab=99.95 E-value=1.7e-27 Score=168.33 Aligned_cols=161 Identities=16% Similarity=0.270 Sum_probs=133.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.-++.+|++++|+..+|||||+.++.+..|.. .+.+|.|...+. +.. +.+++.+|||.|+++++.+...+++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~--afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhcccccc--ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 33567799999999999999999999999998 777888855443 222 458999999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH---HHHHhhcCcccccCcccceeEEEe
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA---EEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++|+|+|+++.+||..+..|.-.+.... ..+.|+|+|+||||+.++ ... ..+.+.++. .|+|+
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf----------efFEt 163 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGF----------EFFET 163 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhCh----------HHhhh
Confidence 99999999999999999999988887664 378999999999999876 223 334445544 89999
Q ss_pred ecCCCCccccchHHHHHHHHHHh
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
|||.+.||...|...+..+-.++
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 99999999877777766655544
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=8.7e-27 Score=175.11 Aligned_cols=154 Identities=22% Similarity=0.287 Sum_probs=119.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.+||+++|++|+|||||++++..+.+.. .+.++.+ +....+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSE--RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcc--cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 46899999999999999999999988776 4555554 4445566655 6889999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+..+. .+.. .++++||++|.
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~e~Sa~~~~ 152 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGML--AVLETSAKESQ 152 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCc--EEEEEECCCCC
Confidence 99999999999999999988886643 3578999999999997542 23333332221 1112 78999999999
Q ss_pred ccccchHHH
Q psy12173 205 HHLHVSVVE 213 (224)
Q Consensus 205 gv~~~~~~~ 213 (224)
|+++.+...
T Consensus 153 ~v~~~~~~l 161 (165)
T cd01864 153 NVEEAFLLM 161 (165)
T ss_pred CHHHHHHHH
Confidence 995555443
No 57
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=7.8e-27 Score=175.46 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=118.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+++|.. .+.+|.+... ..+..+ ...+.+|||||++++...+..+++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 689999999999999999999999877 6667776433 333333 3689999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++.+..|+..+.... ....|+++|+||+|+.+. ...++..+..+. ..+ +++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~--~~~~~Sa~~~~gv 151 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----LGF--EFFEASAKENINV 151 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----cCC--EEEEEECCCCCCH
Confidence 999999999999999988876543 247899999999999654 223333332221 112 8999999999999
Q ss_pred ccchHHHH
Q psy12173 207 LHVSVVEA 214 (224)
Q Consensus 207 ~~~~~~~i 214 (224)
++.|...+
T Consensus 152 ~~l~~~l~ 159 (165)
T cd01865 152 KQVFERLV 159 (165)
T ss_pred HHHHHHHH
Confidence 55544443
No 58
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=7.4e-27 Score=175.02 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.. .+.+|.+... ..+...+ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS--SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 489999999999999999999999887 6677877544 3455554 678999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++.+..|+..+.... ..+.|+++|+||.|+.+.. ..++.....+ .++++|++|||++|.|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sa~~~~~v 150 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-------EYGMDFFETSACTNSNI 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH-------HcCCEEEEEeCCCCCCH
Confidence 999999999999999988876543 2468999999999996543 2333322221 12248999999999999
Q ss_pred ccchHHHH
Q psy12173 207 LHVSVVEA 214 (224)
Q Consensus 207 ~~~~~~~i 214 (224)
++.|...+
T Consensus 151 ~~~f~~l~ 158 (161)
T cd04117 151 KESFTRLT 158 (161)
T ss_pred HHHHHHHH
Confidence 66665544
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=3.5e-27 Score=179.01 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||+.++..+.|.. .+.||.+..+. .+..++ ..+.+|||+|++.+...+..+++++|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--cCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 689999999999999999999998877 66777653322 334443 7789999999999999988899999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcc-------cccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLS-------SISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~Sa 200 (224)
||+++++++.+... |+..+.... .+.|+++|+||+|+.+.. ..+.+.+..... .+..+...++|++|||
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 157 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 99999999999865 555554432 579999999999996531 111111110000 0000111238999999
Q ss_pred CCCCccccchHHHH
Q psy12173 201 PSNLHHLHVSVVEA 214 (224)
Q Consensus 201 ~~~~gv~~~~~~~i 214 (224)
++|+|+++.|...+
T Consensus 158 ~~~~~i~~~f~~l~ 171 (174)
T cd01871 158 LTQKGLKTVFDEAI 171 (174)
T ss_pred cccCCHHHHHHHHH
Confidence 99999966665444
No 60
>KOG0086|consensus
Probab=99.95 E-value=3.2e-27 Score=168.08 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=132.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..++.+|++++|+.|+|||+|+.++..++|.. ....|++..+.. +++ +.+++.+|||.|++++++....+++++
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34678999999999999999999999999988 778888865543 444 458999999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+.++|+|++++++|+.+..|+........ +++-+++++||.|+..... ..+.....+... ..+.++||+
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-------l~flETSa~ 154 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQENE-------LMFLETSAL 154 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-------eeeeeeccc
Confidence 999999999999999999999999876532 5677899999999976532 233222222111 179999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+|+|+++.|..-...++.+
T Consensus 155 TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNK 173 (214)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999998877777664
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=7.7e-27 Score=179.56 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++..+.|.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 58999999999999999999988876 6667776433 3344444 56899999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++..+..+ ..+++++++||++|.|+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-------RLGCEFIEASAKTNVNV 151 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-------HhCCEEEEecCCCCCCH
Confidence 99999999999999888765432 257899999999999653 22333222211 11238999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
++.|...+...
T Consensus 152 ~~l~~~l~~~l 162 (190)
T cd04144 152 ERAFYTLVRAL 162 (190)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=1.3e-26 Score=174.96 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=123.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++++|||||++++..+++.. .+.++.+... ..+..++ ..+.+||+||+++++..+..+++++|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCc--CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 356899999999999999999999998877 5566666543 3444443 678999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|+|++++++++....|+..+..... ..+.|+++++||+|+... ...++..+..+.. .. ++++++||+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~--~~~~e~Sa~ 154 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GD--YPYFETSAK 154 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CC--CeEEEEECC
Confidence 9999999999999999888887766432 246899999999999643 3445554444211 11 279999999
Q ss_pred CCCccccchHHHHH
Q psy12173 202 SNLHHLHVSVVEAE 215 (224)
Q Consensus 202 ~~~gv~~~~~~~i~ 215 (224)
+|.|+++.|...+.
T Consensus 155 ~~~~v~~~~~~~~~ 168 (170)
T cd04116 155 DATNVAAAFEEAVR 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999666665543
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=8.7e-27 Score=174.60 Aligned_cols=155 Identities=16% Similarity=0.215 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.+ ...++.+.... .... ....+.+|||+|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP--QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 489999999999999999999998877 55555554332 2333 34678999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|++++.++.....|+..+.... .+.|+++++||+|+.... ..+..+..+ ... ++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~--~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHN--LPLYYVSAADGTNVVK 148 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcC--CeEEEEeCCCCCCHHH
Confidence 999999999999888888876542 478999999999985331 111111111 112 3899999999999976
Q ss_pred chHHHHHHHHH
Q psy12173 209 VSVVEAEQAMY 219 (224)
Q Consensus 209 ~~~~~i~~~l~ 219 (224)
.|...+..++.
T Consensus 149 l~~~l~~~~~~ 159 (161)
T cd04124 149 LFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHh
Confidence 66655555443
No 64
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.4e-26 Score=180.80 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|++... ..+... ...+.+|||+|++.+......+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~--~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE--VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence 4799999999999999999999998877 5566766443 334432 36899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|||++++++++++..|+..+.........|+++++||.|+... ...++..+..+ ..+++|+++||++|.
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~g~ 152 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-------DLGMKYIETSARTGD 152 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-------HhCCEEEEEeCCCCC
Confidence 999999999999999999998876544346789999999999753 23333332221 112389999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+++.|...+.....+
T Consensus 153 ~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 153 NVEEAFELLTQEIYER 168 (211)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9977776555554443
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.3e-26 Score=173.43 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=123.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++....+.. ...++.+.. ...+..++ ..+.+||+||++++......+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45799999999999999999999998777 445555533 33344443 6899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+..|+..+..... ++.|+++|+||.|+.+. ...++....... . +++++++||++|.
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~~ 152 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----H--GLIFMETSAKTAS 152 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCC
Confidence 999999999999999999988866532 57999999999999743 334444333321 1 2389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.|...+...+
T Consensus 153 ~i~~~~~~~~~~~~ 166 (168)
T cd01866 153 NVEEAFINTAKEIY 166 (168)
T ss_pred CHHHHHHHHHHHHH
Confidence 99777766655544
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=1.1e-26 Score=174.20 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.+..+.. .+.+|.+.. ...+..+ ...+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 489999999999999999999988776 555665522 2334443 36788999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|++++++++....|+..+.......+.|+++|+||+|+... ...++..+..+. .+++++++||++|.|++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~ 151 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-------WGCPFLETSAKERVNVD 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-------cCCEEEEeecCCCCCHH
Confidence 999999999999998888776554457899999999999754 223333322221 11389999999999995
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
+.|. .+.+.
T Consensus 152 ~l~~-~l~~~ 160 (164)
T smart00173 152 EAFY-DLVRE 160 (164)
T ss_pred HHHH-HHHHH
Confidence 5554 44433
No 67
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=7e-27 Score=174.63 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+||+++|++|+|||||+.++..+.|.. .+.|+.+.....+..++ ..+.+|||+|++.. .+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEE
Confidence 489999999999999999999988876 45555554445566665 67899999999763 3567899999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++++++|+++..|+..+.......+.|+++|+||.|+.. ....++..+..+ ....+.|++|||++|.|+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~------~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA------DMKRCSYYETCATYGLNV 147 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH------HhCCCcEEEEecCCCCCH
Confidence 9999999999999999887765546789999999999843 122333222221 111238999999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
++.|...+.
T Consensus 148 ~~~f~~~~~ 156 (158)
T cd04103 148 ERVFQEAAQ 156 (158)
T ss_pred HHHHHHHHh
Confidence 777765553
No 68
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=2.7e-26 Score=170.30 Aligned_cols=152 Identities=38% Similarity=0.635 Sum_probs=127.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
|+++|++|+|||||++++.+..+.. .+.+|.++....+...+..+.+||+||++.++..+..++..+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--CccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 7899999999999999999999887 77888888888777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.+++.....++..+.......++|+++++||.|+.+....++..+.........+.. +++++||++|.|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV--SCYSISCKEKTNIDIVL 153 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCce--EEEEEEeccCCChHHHH
Confidence 888888888888887654446889999999999987655555555554433333333 89999999999994433
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=3.8e-27 Score=181.11 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.|.. .+.||.+..+. .+..+ ...+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 389999999999999999999999877 66677764433 23333 37899999999999988888889999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCc--------ccccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDL--------SSISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Sa 200 (224)
||++++++++.+.. |+..+.... .+.|+++|+||+|+.+.....+.....+. .........++|++|||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 156 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSA 156 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999998864 666665432 57999999999999765332221111100 00000111248999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+..++.
T Consensus 157 k~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 157 KLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CcCCCHHHHHHHHHHHHhc
Confidence 9999997777766665553
No 70
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=1.8e-26 Score=178.73 Aligned_cols=158 Identities=22% Similarity=0.271 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++.+..|.. .+.+|.+... ..+...+ ..+.+||+||++.+...+..++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 46899999999999999999999998876 6667776443 3444443 6789999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++.+..|+..+.... ...|+++|+||+|+.+. ...++....... .+++++++||++|.
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~ 153 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-------MGISLFETSAKENI 153 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEECCCCc
Confidence 99999999999999999988876543 57899999999999764 233333333221 11389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...+...+.
T Consensus 154 gi~~lf~~l~~~~~~ 168 (199)
T cd04110 154 NVEEMFNCITELVLR 168 (199)
T ss_pred CHHHHHHHHHHHHHH
Confidence 997766666665554
No 71
>KOG0071|consensus
Probab=99.95 E-value=7.3e-27 Score=163.83 Aligned_cols=157 Identities=33% Similarity=0.565 Sum_probs=147.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|-.++||||++..|..+. +. ...||+||+...+.+++..+.+||++|++..+..|.+++....++|||+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~--~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SV--TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Cc--ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 46899999999999999999999887 44 6789999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|.++.+.+++.++.++.+++.......|+++.+||-|++....+.|+.+.++++..+.+.| .+.++||.+|.|+.|-+
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W--~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW--YVQPSCALSGDGLKEGL 170 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc--EeeccccccchhHHHHH
Confidence 9999999999999999999998888999999999999999999999999999999888999 99999999999996655
Q ss_pred HH
Q psy12173 211 VV 212 (224)
Q Consensus 211 ~~ 212 (224)
.-
T Consensus 171 sw 172 (180)
T KOG0071|consen 171 SW 172 (180)
T ss_pred HH
Confidence 43
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=9.4e-27 Score=174.42 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=119.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|++.. ......++ ..+.+|||||++++...+..+++++|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVT--DYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 4799999999999999999999988765 556666533 23344444 678899999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+.......+.|+++++||+|+.... ..++..+..+. .. ++++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~i 152 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK-----LK--IPYIETSAKDRLNV 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH-----cC--CcEEEeeCCCCCCH
Confidence 99999999999999998888775444678999999999997542 23333222211 12 28999999999999
Q ss_pred ccchHHH
Q psy12173 207 LHVSVVE 213 (224)
Q Consensus 207 ~~~~~~~ 213 (224)
++.|...
T Consensus 153 ~~l~~~l 159 (164)
T cd04145 153 DKAFHDL 159 (164)
T ss_pred HHHHHHH
Confidence 6555443
No 73
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=1.1e-26 Score=174.04 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 689999999999999999999998877 5666654 3334455544 5688999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++++++.+...|+..+.......++|+++|+||+|+.+.. ...+...... ..++++++|||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-------EWGCPFMETSAKSKTMVN 152 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-------HhCCEEEEecCCCCCCHH
Confidence 9999999999999998888775444689999999999986532 2222222111 112389999999999996
Q ss_pred cchHHHH
Q psy12173 208 HVSVVEA 214 (224)
Q Consensus 208 ~~~~~~i 214 (224)
+.|...+
T Consensus 153 ~l~~~l~ 159 (163)
T cd04176 153 ELFAEIV 159 (163)
T ss_pred HHHHHHH
Confidence 6555433
No 74
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=2.1e-26 Score=180.41 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+||+++|++|+|||||+++|.++.|.. .+.+|.+... ..+... ...+.+|||+|++.+...+..+++++|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 489999999999999999999998877 7778877543 344443 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|++++++++.+..|+..+..... ..+.|+++|+||.|+.+. ...++..+..+. . +++++++||++|
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-----~--~~~~~~iSAktg 151 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-----N--GMESCLVSAKTG 151 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEECCCC
Confidence 99999999999999988888776532 235689999999999643 233333322211 1 128999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
+|+++.|...+.+
T Consensus 152 ~gv~~lf~~l~~~ 164 (215)
T cd04109 152 DRVNLLFQQLAAE 164 (215)
T ss_pred CCHHHHHHHHHHH
Confidence 9995555544444
No 75
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=8.1e-27 Score=174.57 Aligned_cols=155 Identities=21% Similarity=0.336 Sum_probs=127.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|++++|||||++++.++.|+. .+.+|.+..... +..++ ..+.+||++|++++......+++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999888 777887654443 44433 7899999999999999888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
||+++++|++.+..|+..+..... .+.|+++++||.|+.+ ....++..+..... +++|++|||+++.|+.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL-------GVPYFEVSAKNGENVK 150 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT-------TSEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHh-------CCEEEEEECCCCCCHH
Confidence 999999999999999988877654 4689999999999976 45555544444221 1399999999999997
Q ss_pred cchHHHHHHHH
Q psy12173 208 HVSVVEAEQAM 218 (224)
Q Consensus 208 ~~~~~~i~~~l 218 (224)
+.|...+.+.+
T Consensus 151 ~~f~~~i~~i~ 161 (162)
T PF00071_consen 151 EIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766654
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=3.4e-26 Score=171.77 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=119.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++++|||||++++.++.+.. .+.+|.+. ....+..++ ..+.+||+||++++...+..+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999999998876 55566654 344455544 57899999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++..+.+|+..+.... ..++|+++|+||.|+... ...++....... .+++++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~ 152 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-------NGLSFIETSALDGTN 152 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-------cCCEEEEEECCCCCC
Confidence 9999999999999999888876653 246899999999999754 233343333321 123899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+...+
T Consensus 153 v~~l~~~l~ 161 (165)
T cd01868 153 VEEAFKQLL 161 (165)
T ss_pred HHHHHHHHH
Confidence 955554443
No 77
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.5e-26 Score=174.95 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.|.. .+.+|.+.. ...+..++ ..+.+||++|++.+...+..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 489999999999999999999998876 566776643 34455443 678999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++..+..|+..+..... ...|+++++||.|+.+.. ..++.....+. .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-----~~--~~~~evSa~~~~~i 150 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-----LN--IPFFETSAKQSINV 150 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHHH-----cC--CeEEEEeCCCCCCH
Confidence 9999999999999998888766432 458999999999997542 33333222211 12 28999999999999
Q ss_pred ccchHHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMYA 220 (224)
Q Consensus 207 ~~~~~~~i~~~l~~ 220 (224)
++.|...+..++.+
T Consensus 151 ~~~f~~l~~~~~~~ 164 (188)
T cd04125 151 EEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666543
No 78
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=2.6e-26 Score=171.79 Aligned_cols=148 Identities=17% Similarity=0.311 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC----CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG----EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+||+++|++++|||||++++..+.+.. .+.+|.+..+. .+... ...+.+|||||++++...+..+++++|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 489999999999999999999998877 66677765543 33333 47899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+..|+..+.... .+.|+++|+||.|+... ...++..+..+. .+++++++||++|.
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 149 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-------LQLPLFRTSVKDDF 149 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCC
Confidence 99999999999999988888875533 57999999999999653 333333333321 12389999999999
Q ss_pred ccccchH
Q psy12173 205 HHLHVSV 211 (224)
Q Consensus 205 gv~~~~~ 211 (224)
|+++.+.
T Consensus 150 ~v~~l~~ 156 (162)
T cd04106 150 NVTELFE 156 (162)
T ss_pred CHHHHHH
Confidence 9955443
No 79
>KOG0070|consensus
Probab=99.95 E-value=5.4e-27 Score=172.81 Aligned_cols=162 Identities=36% Similarity=0.593 Sum_probs=148.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
....+|+++|-.++||||+++++..+++.. ..||+|++...+.+++..+.+||.+|+++++..|..+++..+++|||
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vt---tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCccc---CCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 356899999999999999999999998655 38999999999999999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|.+|++++.+..+.+..++........|+++.+||.|++...+..++.+.+.+.....+.| .+..|+|.+|+|+.+
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w--~iq~~~a~~G~GL~e- 168 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW--HIQSTCAISGEGLYE- 168 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc--EEeeccccccccHHH-
Confidence 99999999999999999999988778999999999999999999999999999999999999 999999999999944
Q ss_pred hHHHHHHH
Q psy12173 210 SVVEAEQA 217 (224)
Q Consensus 210 ~~~~i~~~ 217 (224)
-.+-+.+.
T Consensus 169 gl~wl~~~ 176 (181)
T KOG0070|consen 169 GLDWLSNN 176 (181)
T ss_pred HHHHHHHH
Confidence 33344333
No 80
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=2e-26 Score=173.20 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=116.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|.+..+.. +.. ....+.+|||||++++......+++.+|++++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 689999999999999999999999876 666666633322 223 347899999999999998888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+++++++++..+|+..+.... ...+.|+++|+||+|+.+. ...++...... .+.++|++|||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~SA~~g~~ 152 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-------EWNCAFMETSAKTNHN 152 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-------HhCCcEEEeecCCCCC
Confidence 99999999999988887665432 2257899999999999653 22222222211 1224899999999999
Q ss_pred cccchHHH
Q psy12173 206 HLHVSVVE 213 (224)
Q Consensus 206 v~~~~~~~ 213 (224)
+++.|...
T Consensus 153 v~~~f~~l 160 (165)
T cd04140 153 VQELFQEL 160 (165)
T ss_pred HHHHHHHH
Confidence 96555443
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=5.4e-26 Score=174.98 Aligned_cols=159 Identities=20% Similarity=0.297 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+... .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 4899999999999999999999887531 34556654433 344443 689999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++++..|+..+.... ..+.|+++|+||.|+... ...++.....+. .+++|+++||++|.|+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-------~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKE-------YGVPFMETSAKTGLNV 151 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 999999999999998888876643 247899999999999643 233333333211 1238999999999999
Q ss_pred ccchHHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMYA 220 (224)
Q Consensus 207 ~~~~~~~i~~~l~~ 220 (224)
++.|...+..+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (191)
T cd04112 152 ELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665555443
No 82
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=1.5e-26 Score=178.84 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=119.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE--Ee--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--QK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|++|+|||||++++..+.|.. .+.+|++...... .. ....+.+|||+|+++++.++..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 6999999999999999988877 6778887655443 33 3479999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~ 213 (224)
+++++..+..|+..+.... .+.|+++|+||+|+.......+..+.. .... +.|++|||++|.|+++.|...
T Consensus 79 ~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~~-----~~~~--~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITFH-----RKKN--LQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHHH-----HHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999888887653 579999999999986532211111111 1123 389999999999997777776
Q ss_pred HHHHHH
Q psy12173 214 AEQAMY 219 (224)
Q Consensus 214 i~~~l~ 219 (224)
+...+.
T Consensus 150 ~~~i~~ 155 (200)
T smart00176 150 ARKLIG 155 (200)
T ss_pred HHHHHh
Confidence 666544
No 83
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=8.2e-26 Score=176.45 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=128.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.+||+++|++|+|||||++++....+.. .+.+|++... ..+..++ ..+.+|||+|++.+...+..+++.+|+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~--~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 456899999999999999999999998877 5566666443 3445544 678899999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++..+..|+..+..... .+.|+++++||+|+.+. ...++..+..+. . +++++++||+++
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~ 153 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----H--GLIFMEASAKTA 153 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 9999999999999999888887755432 57899999999999764 344444443321 1 238999999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
.|+++.|...+..++.+.
T Consensus 154 ~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 154 QNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999888888887776654
No 84
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=4.4e-26 Score=174.75 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.+.. .+.+|.+..+. .+... ...+.+|||||++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 78 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEE
Confidence 489999999999999999999999877 66677664433 23333 3689999999999999998889999999999
Q ss_pred EEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCC------CHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 129 VVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGAL------SAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 129 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|+|+++++++++... |+..+... ..+.|+++|+||.|+.... ..++..+..... ... ++++|||+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~----~~~--~~~e~Sa~ 150 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ----GAF--AYLECSAK 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc----CCc--EEEEccCC
Confidence 999999999999865 55555433 2578999999999996532 233333322110 111 79999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+++.|...+..++.
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999997777766666554
No 85
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=5.8e-26 Score=169.84 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+.. ...++.+. ....+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998777 45555543 333344443 678999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.++..|+..+.... .++.|+++++||.|+.+. ...++....... .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~i 150 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NG--LLFLETSALTGENV 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cC--CEEEEEECCCCCCH
Confidence 999999999999999888775543 267899999999999653 333443333321 12 38999999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
++.|...+.
T Consensus 151 ~~~~~~~~~ 159 (161)
T cd04113 151 EEAFLKCAR 159 (161)
T ss_pred HHHHHHHHH
Confidence 665554443
No 86
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=7.7e-26 Score=171.10 Aligned_cols=156 Identities=42% Similarity=0.717 Sum_probs=130.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+. .+.+|.+++...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~---~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS---HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc---ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999987653 3567788888888888899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+.+ +++++||++|+|+++.+
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTW--HIQACSAKTGEGLQEGM 167 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeE--EEEEeECCCCCCHHHHH
Confidence 9999888888888888877654445799999999999987766777877777665554555 78999999999995544
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 168 ~ 168 (173)
T cd04155 168 N 168 (173)
T ss_pred H
Confidence 3
No 87
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=6.3e-26 Score=171.37 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHH-HHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVR-RFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~~d~i 126 (224)
.++|+++|++|+|||||++++..+.++. .+.++.+.. ...+.+++ ..+.+||++|+++++ ..+..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE--RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 4799999999999999999999988876 556666643 33455544 789999999999987 4678889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC--
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS-- 202 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-- 202 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..+..+ .++++|++|||++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-------AHSMPLFETSAKDPS 152 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-------HcCCcEEEEeccCCc
Confidence 9999999999999999988888765444679999999999986542 2222222221 1124899999999
Q ss_pred -CCccccchHHHH
Q psy12173 203 -NLHHLHVSVVEA 214 (224)
Q Consensus 203 -~~gv~~~~~~~i 214 (224)
+.|+++.|...+
T Consensus 153 ~~~~i~~~f~~l~ 165 (170)
T cd04115 153 ENDHVEAIFMTLA 165 (170)
T ss_pred CCCCHHHHHHHHH
Confidence 778855555444
No 88
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=9.2e-26 Score=176.89 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=123.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++....+.. .+.+|.+... ..+..++ ..+.+||++|++++...+..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 467899999999999999999999998876 5567766443 4455544 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+.. ..++....... . .++|+++||++|
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-----~--~~~~~e~SA~~g 159 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-----E--GLSFLETSALEA 159 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhcccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 9999999999999999998888766532 579999999999986542 22333222211 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.|...+....
T Consensus 160 ~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 160 TNVEKAFQTILLEIY 174 (216)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999666655544443
No 89
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=7.5e-26 Score=174.98 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHH--------HHHHhhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVR--------RFWNTYF 120 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~--------~~~~~~~ 120 (224)
+||+++|++|+|||||++++..+.|.. .+.||++... ..+.+++ ..+.+|||||.+.+. ......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc--ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 489999999999999999999999877 5677765332 3444555 678899999965321 1233457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+.+|++|+|||++++++++....|+..+.... ...++|+++|+||+|+... ...++..+... +.++|+|+
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~ 152 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR------KSWKCGYL 152 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH------HhcCCcEE
Confidence 89999999999999999999988888887653 1357999999999999654 22222222111 12345999
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||++|.|+++.|...+..++.
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhhc
Confidence 99999999997777776666554
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=1.2e-25 Score=167.90 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.||+++|++++|||||++++.+..+.. .+.++.+ +....+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 389999999999999999999998877 4455555 3444455544 579999999999999999899999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+..... .+.|+++++||+|+... ...++.....+. . +++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~v 150 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-----L--NAMFIETSAKAGHNV 150 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHHH-----h--CCEEEEEeCCCCCCH
Confidence 9999999999999999998876532 36999999999999543 233333333321 1 238999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++....+.+
T Consensus 151 -~~l~~~i~~ 159 (161)
T cd01861 151 -KELFRKIAS 159 (161)
T ss_pred -HHHHHHHHH
Confidence 444444443
No 91
>KOG0095|consensus
Probab=99.94 E-value=1.5e-26 Score=164.07 Aligned_cols=163 Identities=19% Similarity=0.279 Sum_probs=133.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||+|+++++.+-|++ ....|++ |.++.+.++ .+++.+|||.|+++++++.+.+++++++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfpp--gqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCC--CCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 467899999999999999999999999999 6666665 566666664 4889999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|+|++-..+|+-+-+|+.++-++.+ .++--|+|+||.|+.+. ..++++.+.+.. .+.+ .|+++||+...
T Consensus 83 lilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs~----~qdm--yfletsakea~ 155 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSE----AQDM--YFLETSAKEAD 155 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHHH----hhhh--hhhhhcccchh
Confidence 9999999999999999999999988754 45667999999999765 223333333211 1333 79999999999
Q ss_pred ccccchHHHHHHHHHHh
Q psy12173 205 HHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~~ 221 (224)
|++..|.+.+.+.+...
T Consensus 156 nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISEA 172 (213)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99888888777765543
No 92
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=1.1e-25 Score=179.29 Aligned_cols=155 Identities=15% Similarity=0.232 Sum_probs=122.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|++ +....+..++ ..+.+|||+|++.+...+..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 489999999999999999999998877 6677775 3444455544 6788999999999988888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcC--------CCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQ--------RLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
||+++.++|+++..|+..+.... ...++|+++|+||+|+.. ....+++.+.+... . .+.++++|
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~--~~~~~evS 152 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----E--NCAYFEVS 152 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----C--CCEEEEEe
Confidence 99999999999999888886532 224789999999999974 34555655554321 1 23899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+++.|. .+.+
T Consensus 153 Aktg~gI~elf~-~L~~ 168 (247)
T cd04143 153 AKKNSNLDEMFR-ALFS 168 (247)
T ss_pred CCCCCCHHHHHH-HHHH
Confidence 999999955554 4443
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.5e-25 Score=167.79 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+..+.. ...++.+.. ...+..++ ..+.+||+||++.+......+++++|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 489999999999999999999988766 555555543 33445544 688999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .++|+++++||+|+... ...++..+..+. .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~e~Sa~~~~~i 150 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEE-----HG--LPFFETSAKTNTNV 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHH-----cC--CeEEEEeCCCCCCH
Confidence 9999999999999888888766543 47999999999998753 334444333221 12 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++.+...+.+
T Consensus 151 ~~l~~~i~~~ 160 (164)
T smart00175 151 EEAFEELARE 160 (164)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 94
>KOG0091|consensus
Probab=99.94 E-value=2.2e-26 Score=165.49 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=133.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe---CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK---GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+.+++.++|+.-+|||||++.++.++|.+ ...||+|.+... +.. ..+++.+|||+|+++++++...+++++-
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 367899999999999999999999999999 778888854332 333 2489999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC-CcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++++|+|+++.+||+.+..|+.+.......+. .-+.+|++|+|+... ...+|.++...- .++ .|+++||+
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----hgM--~FVETSak 156 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----HGM--AFVETSAK 156 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----cCc--eEEEeccc
Confidence 99999999999999999999998776654334 446788999999764 334443333321 333 89999999
Q ss_pred CCCccccchHHHHHHHHHHhhc
Q psy12173 202 SNLHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~~~ 223 (224)
+|.||++.|....+++..++.|
T Consensus 157 ~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred CCCcHHHHHHHHHHHHHHHHhc
Confidence 9999988888887777776654
No 95
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=3.7e-26 Score=172.99 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=115.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
|+++|++|+|||||++++..+.|.. .+.++...... .+..++ ..+.+|||||++++...+..+++++|++|+|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 5899999999999999999999877 55666543332 333433 579999999999999888888999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcC-------cccccCcccceeEEEeecCC
Q psy12173 132 SADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALD-------LSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 132 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++++++.+.. |+..+.... ++.|+++|+||+|+..... .+++.+.-. ...+......+++++|||++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALT 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999865 666555432 5899999999999975321 111100000 00000011112899999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+++.|...+..++
T Consensus 157 ~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 157 QEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999777776666554
No 96
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=9e-26 Score=170.48 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=117.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+.+||+++|++|+|||||++++.++.|. . .+.||++.. ...+..++ ..+.+||++|++.+...+..+++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLN--AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcc--cCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 35789999999999999999999999987 6 667777643 33455544 67899999999999888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEee
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
++++|+|++++++++....|+..+... .++|+++|+||+|+.+.. ..+++.+.++. . .++++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~--~~~~~S 147 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------P--PPLHFS 147 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------C--CCEEEE
Confidence 999999999998998887777765322 479999999999996542 12333333321 0 468999
Q ss_pred cCCCCccccchHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~ 217 (224)
|++|.|+++.|...+..+
T Consensus 148 a~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 148 SKLGDSSNELFTKLATAA 165 (169)
T ss_pred eccCccHHHHHHHHHHHh
Confidence 999999965555444433
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=1.9e-25 Score=167.41 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCceeEE--EEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNIT--ILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+||+++|++|||||||++++..+ .|+. .+.+|.+.... .+.. ....+.+|||||++.+..++..+++.+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK--NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc--cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 48999999999999999999865 4555 67777765443 2332 34899999999999999988899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... .+.|+++|+||+|+.+.. ...+...... ..+++++++||++|
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~ 149 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-------ANQLKFFKTSALRG 149 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH-------HcCCeEEEEeCCCC
Confidence 999999999999998888888776653 468999999999996542 2222111111 11238999999999
Q ss_pred CccccchHHHH
Q psy12173 204 LHHLHVSVVEA 214 (224)
Q Consensus 204 ~gv~~~~~~~i 214 (224)
.|+++.+...+
T Consensus 150 ~gi~~l~~~l~ 160 (164)
T cd04101 150 VGYEEPFESLA 160 (164)
T ss_pred CChHHHHHHHH
Confidence 99955554433
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=3.2e-25 Score=167.33 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+..+.. ...++.+.. ...+...+ ..+.+||+||++.+...+..+++++|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 489999999999999999999998776 555665543 33344444 677899999999999999899999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|+|+++++++++...|...+..... ..++|+++|+||+|+.. ....++.....+.. .. ++++++||++|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~--~~~~~~Sa~~~ 152 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GN--IPYFETSAKEA 152 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CC--ceEEEEECCCC
Confidence 9999999998888877776655432 34789999999999973 23444444333211 11 38999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+..++.+
T Consensus 153 ~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 153 INVEQAFETIARKALEQ 169 (172)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99966666555555554
No 99
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=2.7e-25 Score=166.40 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=120.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++.++.+.. ...++.+. ....+.++ +..+.+||+||++++...+..+++++|+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 3699999999999999999999999776 45666653 33444444 478999999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++.....|+..+..... .+.|+++++||.|+.+. ...++.....+. .. ++++++||++|.|
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~ 150 (163)
T cd01860 79 VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NG--LLFFETSAKTGEN 150 (163)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cC--CEEEEEECCCCCC
Confidence 99999999999999999888877643 67899999999998743 234443333321 11 3899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+...+
T Consensus 151 v~~l~~~l~ 159 (163)
T cd01860 151 VNELFTEIA 159 (163)
T ss_pred HHHHHHHHH
Confidence 955544433
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=3.3e-25 Score=165.64 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++....+.. ...++.+... ..+... ...+.+||+||++.+......+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 489999999999999999999988766 4555555433 333343 3789999999999999888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|++++++++....|+..+.......+.|+++++||+|+... ...++..+.... . +++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----H--NMLFIETSAKTRDGVQ 151 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----c--CCEEEEEecCCCCCHH
Confidence 9999999999998888887776655568999999999999743 333333333221 1 2389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.+...
T Consensus 152 ~~~~~~ 157 (161)
T cd01863 152 QAFEEL 157 (161)
T ss_pred HHHHHH
Confidence 554433
No 101
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=1.2e-25 Score=169.50 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+... ..+..++ ..+.+|||||++++..++..+++.++++++|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 689999999999999999999998876 6667766332 3344443 6889999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccc-eeEEEeecCCCCcc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHR-IKLIATQAPSNLHH 206 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 206 (224)
+|++++++++....|...+.......++|+++++||.|+.... ..++.....+ .++ ++++++||++|.|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ-------QWGNVPFYETSARKRTNV 152 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH-------HcCCceEEEeeCCCCCCH
Confidence 9999999999998888887765444679999999999996542 2222222211 111 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++.|...+.+
T Consensus 153 ~~~f~~i~~~ 162 (168)
T cd04177 153 DEVFIDLVRQ 162 (168)
T ss_pred HHHHHHHHHH
Confidence 6655544433
No 102
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=2.8e-25 Score=166.20 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++....+.. .+.++++..... ...+ ...+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 489999999999999999999988776 556665533322 3333 46899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++++++.....|+..+.......++|+++|+||+|+... ....+.....+ .++++++++||++|.|++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-------QWGVPYVETSAKTRQNVE 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-------HhCCeEEEeeCCCCCCHH
Confidence 999999999999999999888654468999999999999762 22333222221 112389999999999996
Q ss_pred cchHHHHH
Q psy12173 208 HVSVVEAE 215 (224)
Q Consensus 208 ~~~~~~i~ 215 (224)
+.+...+.
T Consensus 152 ~l~~~l~~ 159 (164)
T cd04139 152 KAFYDLVR 159 (164)
T ss_pred HHHHHHHH
Confidence 65554443
No 103
>KOG0075|consensus
Probab=99.94 E-value=7.6e-26 Score=159.91 Aligned_cols=156 Identities=35% Similarity=0.632 Sum_probs=145.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+.+.++|-.+||||||++.+..+.+.+ +..||.|++...++...+.+.+||.||+.+++++|..++++++++++|+|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e--dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh--hhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 4689999999999999999999988888 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++.++..+..+..++......++|+++.+||.|+++..+-.++-+.+++..+..+.. .++.+||+...|+ +...
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREv--cC~siScke~~Ni-d~~~ 174 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREV--CCFSISCKEKVNI-DITL 174 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceE--EEEEEEEcCCccH-HHHH
Confidence 999999999999999999998888999999999999999999999999999988877776 8999999999998 4433
Q ss_pred H
Q psy12173 212 V 212 (224)
Q Consensus 212 ~ 212 (224)
+
T Consensus 175 ~ 175 (186)
T KOG0075|consen 175 D 175 (186)
T ss_pred H
Confidence 3
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.9e-25 Score=168.07 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.||+++|++|+|||||++++..+.|+. .+.++.+........ ....+.+|||||.+.+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 389999999999999999999998866 333333322222222 4578999999999988887777789999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCc--ccccCcccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDL--SSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|++++++++.+..+|...+.... .+.|+++|+||+|+.+........+.... .... .. .++++|||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR-EI--ETCVECSAKTLINVSE 154 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh-cc--cEEEEeccccccCHHH
Confidence 99999999998655544444322 47999999999999765432111111100 0000 11 2799999999999955
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.|. .+.+..
T Consensus 155 lf~-~~~~~~ 163 (166)
T cd01893 155 VFY-YAQKAV 163 (166)
T ss_pred HHH-HHHHHh
Confidence 444 555444
No 105
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=1.9e-25 Score=169.08 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.++.... ...+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 489999999999999999999998876 555665422 22344443 5688999999999998888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-HHhhcCcc-------cccCcccceeEEEeecC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-VGVALDLS-------SISSRQHRIKLIATQAP 201 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++++++.....|...+... ..+.|+++++||+|+.+.....+ ..+..... ........++|++|||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999998865444443332 36899999999999865421111 10000000 00001111279999999
Q ss_pred CCCccccchHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQA 217 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~ 217 (224)
+|.|+++.|...+..+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999977776665543
No 106
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=1.3e-24 Score=167.42 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.. ..+.+|.+.. ...+..++ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 489999999999999999999988763 1355666643 33455554 567899999999999888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC------CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL------SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|+|++++++++....|+..+.... .+.|+++|+||+|+.... ..++..+... ..+++++++||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~ 150 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-------EIKAQHFETSSKT 150 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-------HcCCeEEEEeCCC
Confidence 999999999999888888776542 478999999999986431 1122222211 1123899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.+...+..++.
T Consensus 151 ~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 151 GQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99996655555544443
No 107
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=1.3e-24 Score=169.89 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=119.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|++|+|||||++++....+. .+.++.+... ..+.+++ ..+.+|||||++++...+..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE---DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 35689999999999999999999998763 3456665433 3444443 678999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+++|+|+++++++.+....|...... ....+.|+++|+||+|+.... ..++....... . .+.|+++||++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----~--~~~~~e~SAk~ 161 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----H--GCLFLECSAKT 161 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----c--CCEEEEEeCCC
Confidence 99999999999999988765554432 223468999999999997542 22332222211 1 23899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+.+++.
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 162 RENVEQCFEELALKIME 178 (211)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99996666655555544
No 108
>KOG0081|consensus
Probab=99.93 E-value=6.8e-27 Score=167.40 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=130.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC-----------CeEEEEEEcCCchhHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG-----------EYTLNIFELGGQENVRRF 115 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-----------~~~~~l~D~~G~~~~~~~ 115 (224)
.++.+|.+.+|+.|+||||++.+++.++|.. ...+|+++.+ +.+-++ .+.+.+|||+|+++++++
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3567899999999999999999999999887 6666666433 333331 278999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHH---HHhhcCcccccCcc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEE---VGVALDLSSISSRQ 190 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~---~~~~~~~~~~~~~~ 190 (224)
...+++.+-+++++||+++..||-+..+|+.++..+.-+.+..+|+++||+|+.+... .++ +.+.+.+
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl------- 156 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL------- 156 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999998887778899999999999976522 222 3333333
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
||+++||-+|.||++...-.+...+.+.
T Consensus 157 ---PYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 157 ---PYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ---CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999766655555555544
No 109
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=8e-25 Score=165.79 Aligned_cols=153 Identities=15% Similarity=0.219 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+|++++|++|+|||||++++.++.|.. .+.+|.. .....+..++ ..+.+|||||++++...+..+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT--EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 489999999999999999999988877 5666653 2222344443 6788999999999999888889999999999
Q ss_pred EECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCccccee
Q psy12173 130 VDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 130 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
+|++++++++... .|+..+... ..+.|+++++||.|+.... ..++.....+ ....+.
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~------~~~~~~ 150 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE------KIGACE 150 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH------HhCCCe
Confidence 9999999999885 456555443 2478999999999986431 1112211111 111138
Q ss_pred EEEeecCCCCccccchHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
|++|||++|.|+++.|...+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999776655543
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=1.9e-24 Score=161.31 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++....+.. ...++.. +....+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 489999999999999999999988766 4444443 333334433 3579999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .++|+++++||+|+.+. ...+++.+..+. . +++++++||++|+|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~s~~~~~gi 150 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----V--GAKHFETSAKTGKGI 150 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCCCH
Confidence 9999999999998888887766543 37899999999999754 233444333321 1 238999999999999
Q ss_pred ccchHH
Q psy12173 207 LHVSVV 212 (224)
Q Consensus 207 ~~~~~~ 212 (224)
++.+..
T Consensus 151 ~~~~~~ 156 (162)
T cd04123 151 EELFLS 156 (162)
T ss_pred HHHHHH
Confidence 555544
No 111
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=4.7e-25 Score=170.05 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=107.9
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCCCC---CCCCCCCCce-e-EE-----------EEEeCCeEEEEEEcCCchhHHH
Q psy12173 52 QRKILILGLDNSGKSTLIK-QISSGNTSL---SHNLKPTEGF-N-IT-----------ILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~-~l~~~~~~~---~~~~~~t~~~-~-~~-----------~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
.+||+++|+.|+|||||+. ++..+.|.. ...+.||++. . +. .+......+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3699999999999999996 665543321 1156677742 1 11 11123478999999999863
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCC---------------------C
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGA---------------------L 172 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---------------------~ 172 (224)
....+++++|++|+|||+++++|++++.. |+..+.... .+.|+++|+||+|+.+. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44567899999999999999999999975 666654432 47899999999998642 1
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
..++..+.. +..+++|++|||++|.||++.|...+.
T Consensus 158 ~~~e~~~~a-------~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 158 PPETGRAVA-------KELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CHHHHHHHH-------HHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 223332222 122348999999999999777765553
No 112
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=3.9e-25 Score=166.12 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhH-HHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENV-RRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~-~~~~~~~~~~~d~ii~v 129 (224)
||+++|++|+|||||++++..+.|.. .+.++.+.. ...+..++ ..+.+||+||++.+ ......+++.+|++++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc--ccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 58999999999999999999888765 556665422 23334443 57899999999853 33455678999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC-c
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL-H 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-g 205 (224)
+|++++++++.+..|+..+..... ..++|+++|+||+|+.+. ...++.....+. . +++|++|||++|. |
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~e~Sa~~~~~~ 151 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-----L--GCLFFEVSAAEDYDG 151 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-----c--CCEEEEeCCCCCchh
Confidence 999999999999888777665432 357999999999998643 233333222211 1 1389999999995 8
Q ss_pred cccchHHHHHH
Q psy12173 206 HLHVSVVEAEQ 216 (224)
Q Consensus 206 v~~~~~~~i~~ 216 (224)
+++.|...+.+
T Consensus 152 v~~~f~~l~~~ 162 (165)
T cd04146 152 VHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 97776655543
No 113
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=1.8e-24 Score=170.11 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCC--ceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhcc-CCCEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTE--GFNITILQK--GEYTLNIFELGGQENVRRFWNTYFE-DTDLL 126 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~--~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~i 126 (224)
+||+++|++|+|||||++++..+.+. . .+.++. ++....+.+ ....+.+|||||++.+ ....++. ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDH--AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCcc--CcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEE
Confidence 48999999999999999999888775 4 445555 344445555 4478999999999832 2334556 89999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|||++++++++...+|+..+.......++|+++|+||+|+.+.. ..++..+... .. +++|+++||++|.
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~--~~~~~e~SA~~~~ 149 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VF--DCKFIETSAGLQH 149 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----Hc--CCeEEEecCCCCC
Confidence 9999999999999999988888775444679999999999996542 2232222211 11 2389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+...
T Consensus 150 gv~~l~~~l~~~~ 162 (221)
T cd04148 150 NVDELLEGIVRQI 162 (221)
T ss_pred CHHHHHHHHHHHH
Confidence 9966555544443
No 114
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=9.7e-25 Score=165.36 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.|.. .+.+|.+... ..+..++ ..+.+|||+|++.+...+...+.++|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 489999999999999999999998877 6667766443 3444443 6789999999999988877788999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCccc-------ccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSS-------ISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~Sa 200 (224)
+|+++.++++.... |+..+... ..+.|+++|+||.|+.+... .+++........ ........++++|||
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 157 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecc
Confidence 99999999988865 44444432 24789999999999865421 111110000000 000001127999999
Q ss_pred CCCCccccchHHHHH
Q psy12173 201 PSNLHHLHVSVVEAE 215 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~ 215 (224)
++|.|+++.|...+.
T Consensus 158 ~~~~~v~~lf~~l~~ 172 (175)
T cd01870 158 KTKEGVREVFEMATR 172 (175)
T ss_pred ccCcCHHHHHHHHHH
Confidence 999999666654443
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.2e-24 Score=168.45 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=119.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++..+.+.. .+.+|+. .....+.+.+ ..+.+||+||+..+...+..++..+|++++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 68999999999999999999998776 5555553 4444555555 68899999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|++++++++....|+..+.......++|+++++||.|+... ...++..+... ..++++++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWNCGFVETSAKDNENVL 152 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcCCcEEEecCCCCCCHH
Confidence 99999999999988888877654457999999999999653 11222222111 1122379999999999996
Q ss_pred cchHHHHHH
Q psy12173 208 HVSVVEAEQ 216 (224)
Q Consensus 208 ~~~~~~i~~ 216 (224)
+.+...+..
T Consensus 153 ~l~~~l~~~ 161 (198)
T cd04147 153 EVFKELLRQ 161 (198)
T ss_pred HHHHHHHHH
Confidence 555544443
No 116
>KOG0097|consensus
Probab=99.93 E-value=1.2e-24 Score=153.15 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=137.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
..+.+|..++|+-|+|||+|+.+++.++|-. +.+.|++..+. .+.+ ...++.+|||.|+++++.....+++++.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfma--dcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhh--cCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999999988 88888875443 3444 4589999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+.+.|+|++.+.+...+..|+.......+ ++..+++++||.|+... ...++.++..+.... .|+++||++
T Consensus 86 galmvyditrrstynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeeak~faeengl-------~fle~sakt 157 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-------MFLEASAKT 157 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-------EEEEecccc
Confidence 99999999999999999999988776544 56789999999999654 455666555543222 899999999
Q ss_pred CCccccchHHHHHHHHHHh
Q psy12173 203 NLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~~ 221 (224)
|.|+++.|.+.+.++.++.
T Consensus 158 g~nvedafle~akkiyqni 176 (215)
T KOG0097|consen 158 GQNVEDAFLETAKKIYQNI 176 (215)
T ss_pred cCcHHHHHHHHHHHHHHhh
Confidence 9999999999998888764
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=2.8e-24 Score=159.31 Aligned_cols=149 Identities=22% Similarity=0.299 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++++|||||++++.+..+.. .+.+|.+........ ....+.+||+||+..+......+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE--NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--ccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999999877 556666655544333 34789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC--CCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP--GALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .+.|+++++||+|+. .....++..+..+. +.++++++||++|.|+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i 150 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-------NGLLFFETSAKTGENV 150 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-------cCCeEEEEecCCCCCH
Confidence 9999999899999888888776532 469999999999995 33455555554432 2238999999999999
Q ss_pred ccchH
Q psy12173 207 LHVSV 211 (224)
Q Consensus 207 ~~~~~ 211 (224)
++.+.
T Consensus 151 ~~~~~ 155 (159)
T cd00154 151 EELFQ 155 (159)
T ss_pred HHHHH
Confidence 54443
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=3.3e-24 Score=163.31 Aligned_cols=156 Identities=22% Similarity=0.267 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++....+.. .+.+|++.. ...+...+ ..+.+||+||++++...+..++..++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 589999999999999999999988765 556666532 33444443 5679999999999998888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++.++++....++..+.......+.|+++++||+|+... ...++.....+ .+.++++++||++|.|++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-------SWGAAFLESSARENENVE 152 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-------HcCCeEEEEeCCCCCCHH
Confidence 999999999999999988887654467899999999998643 23333322221 111389999999999995
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
+.+...+..+
T Consensus 153 ~l~~~l~~~~ 162 (180)
T cd04137 153 EAFELLIEEI 162 (180)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=6.5e-24 Score=159.88 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=116.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++..+.+.. ...+|.+ +....+.+++ ..+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999887766 4555554 4444455555 6789999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+..... .+.|+++++||+|+.+... ..+..+.+.. ... +++++|||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~--~~~~~~Sa~~~~g 156 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDLAERREVSQQRAEEFSD----AQD--MYYLETSAKESDN 156 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccccCHHHHHHHHH----HcC--CeEEEeeCCCCCC
Confidence 999999999999888888776654322 4689999999999975422 1222222211 011 2899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+....
T Consensus 157 v~~l~~~i~ 165 (169)
T cd04114 157 VEKLFLDLA 165 (169)
T ss_pred HHHHHHHHH
Confidence 955554433
No 120
>KOG0395|consensus
Probab=99.92 E-value=1.3e-24 Score=166.98 Aligned_cols=160 Identities=24% Similarity=0.267 Sum_probs=133.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|.+|+|||+|..++..+.|.. .+.||++. ....+..++ ..+.++||+|++++..+...++..+|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 35799999999999999999999999999 88898874 344455544 78899999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+||++++..||+.+..++..+.........|+++|+||+|+.+. ...++.... ...|.|+|+|+||+.+.+
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l-------a~~~~~~f~E~Sak~~~~ 152 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL-------ARSWGCAFIETSAKLNYN 152 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH-------HHhcCCcEEEeeccCCcC
Confidence 99999999999999999999966655567899999999999873 444443333 245667999999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+++.|...+..+-.
T Consensus 153 v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 153 VDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHHh
Confidence 98777766665443
No 121
>KOG0088|consensus
Probab=99.92 E-value=6.6e-26 Score=162.23 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=131.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
...+|++++|+.=+|||||+-|+..++|...+...-...|..+.++.. ..++.+|||+|+++|-.+-..+++++|+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 467999999999999999999999999887332222223555555553 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|||+++.+||+.+..|..++.+-.. ..+.+++|+||+|+.++ ...++.....+. . ++.|+++||+.+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-----v--GA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAES-----V--GALYMETSAKDNVG 162 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-----h--chhheecccccccC
Confidence 99999999999999999999876532 45789999999999765 233333333322 1 22899999999999
Q ss_pred cccchHHHHHHHHHHhhc
Q psy12173 206 HLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 206 v~~~~~~~i~~~l~~~~~ 223 (224)
|.+.|.....+++++++|
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 998888888888887654
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=6.4e-24 Score=166.38 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=124.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
....+||+++|++|||||||++++..+.+.. .+.+|.+.......+ ....+.+|||+|++++...+..++.+++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEK--KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3567899999999999999999998888777 677888866655433 3489999999999999988888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..+..+ ...+ .++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~--~~~e~Sa~~~~ 154 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNL--QYYDISAKSNY 154 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHH-----HcCC--EEEEEeCCCCC
Confidence 9999999999999999998888876543 5789999999999865422122222111 1222 89999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...++..+.
T Consensus 155 ~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 155 NFEKPFLWLARRLTN 169 (215)
T ss_pred CHHHHHHHHHHHHhh
Confidence 997666665554443
No 123
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=1.3e-23 Score=156.39 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++....+.. .+.++.+. ....+... ...+.+||+||++.+......+++.+|++++|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVE--EYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--CcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 68999999999999999999887666 55565552 23334444 468899999999999998888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+++++++.+...++..+.........|+++++||+|+... ...++....... . +++++++||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-----W--GCPFIETSAKDNINIDE 151 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-----c--CCcEEEeccCCCCCHHH
Confidence 99999999999999988887654457999999999999763 223333333221 1 13899999999999955
Q ss_pred chHHH
Q psy12173 209 VSVVE 213 (224)
Q Consensus 209 ~~~~~ 213 (224)
.+...
T Consensus 152 l~~~l 156 (160)
T cd00876 152 VFKLL 156 (160)
T ss_pred HHHHH
Confidence 54433
No 124
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=2.6e-23 Score=156.46 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh------H---HHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------V---RRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------~---~~~~~~~~~~~ 123 (224)
++|+++|++|+|||||++++.+..+.......+|.+.....+..++..+.+|||||+.. . ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 47999999999999999999998865422233455666666666778999999999732 0 01111112346
Q ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKL--PVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++.+++ +....++..+.... .+.|+++|+||+|+.+.....+..+..+ ...+ ++++|||+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~--~~~~~Sa~ 151 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEEE-----LEGE--EVLKISTL 151 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhhh-----hccC--ceEEEEec
Confidence 899999999987653 55556666654332 4799999999999976533332222111 1233 89999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +++...+.+.+
T Consensus 152 ~~~gi-~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGV-DEVKNKACELL 167 (168)
T ss_pred ccCCH-HHHHHHHHHHh
Confidence 99999 44445555443
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=2.5e-23 Score=160.91 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEe-------CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQK-------GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
+||+++|++++|||||++++..+.|.. .+.+|++... ..+.+ ....+.+|||+|++++..++..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 489999999999999999999999887 6778887433 33443 236899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcC------------------CCCCCcEEEEEeCCCCCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQ------------------RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~Dl~~~ 171 (224)
|++|+|+|+++++|++++..|+..+.... ...+.|+++|+||.|+.++
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99999999999999999999999887631 1246899999999999654
No 126
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.91 E-value=8.3e-24 Score=159.43 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.++.+.. .+.++..... ..+.. ....+.+||+||++.+.......++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 589999999999999999999998755 4445443222 22333 346899999999998887777778999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH-------------HHHHhhcCcccccCcccceeEE
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-------------EEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+|+++++++......|...+.... .+.|+++|+||+|+.+.... ++..+.... ... .+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~--~~~~ 151 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE----IGA--IGYM 151 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH----hCC--eEEE
Confidence 999999898887665555444322 47999999999999765422 111111111 011 2899
Q ss_pred EeecCCCCccccchH
Q psy12173 197 ATQAPSNLHHLHVSV 211 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~ 211 (224)
++||++|.|+++.+.
T Consensus 152 ~~Sa~~~~gi~~l~~ 166 (171)
T cd00157 152 ECSALTQEGVKEVFE 166 (171)
T ss_pred EeecCCCCCHHHHHH
Confidence 999999999955544
No 127
>KOG0393|consensus
Probab=99.91 E-value=1.1e-24 Score=164.46 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=127.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC-C--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG-E--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~-~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+|++++|++++|||+|+..+..+.|+. .+.||+--++. .+.++ + +.+.+|||.|+++|.+++...+.++|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~--~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPE--EYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcc--cccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 45799999999999999999999999999 88888763332 34443 3 7899999999999999887789999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH-HHHHhhcCccc--------ccCcccceeEEE
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-EEVGVALDLSS--------ISSRQHRIKLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~ 197 (224)
++||++.+++|++++...|..-+.+.+ ++.|+|+|++|.||+++... +++... .... ..++.....|+|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHHHHHHHHHHhCcceeee
Confidence 999999999999997666655555443 89999999999999854211 111110 1100 011222348999
Q ss_pred eecCCCCccccchHHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
|||+++.|+.+.|..++..++..
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcc
Confidence 99999999988888888887764
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=3.3e-23 Score=158.93 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.+.. .+.+|....+ ..+..++ ..+.+||++|++.+.......+.++|++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 489999999999999999999888766 5555554332 2344443 6689999999998877666678999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC------------HHHHHhhcCcccccCcccceeEE
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS------------AEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+|+++.++++.... |+..+.... .+.|+++|+||.|+.+... .++..... .....++|+
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 151 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVA------KEIGAKKYM 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHH------HHhCCcEEE
Confidence 99999999999875 555554432 4799999999999854211 11111111 111113799
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||++|.|+++.|...+.+++.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999997776666655544
No 129
>KOG0074|consensus
Probab=99.91 E-value=1.6e-23 Score=147.32 Aligned_cols=154 Identities=36% Similarity=0.654 Sum_probs=142.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.++|+++|-.++|||||+++|.+.. +. ...||.||+...+..++ .++.+||.+|+...+..|..++.+.|++|||
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED-~~--hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSED-PR--HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCC-hh--hccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 46899999999999999999999877 44 67899999999999866 9999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|.++...|++..+.+.+++...+...+|+.+.+||.|+......+++...+++.....+.| .+.+|||.+++|+.+.
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw--hIq~csals~eg~~dg 170 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW--HIQECSALSLEGSTDG 170 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE--EeeeCccccccCccCc
Confidence 99999999999999999999988878899999999999999999999999999998888998 9999999999998543
No 130
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=6.8e-23 Score=153.25 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+.|+++|++++|||||+++|.+.. +........|.+.....+.+. +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999999643 222112233445555555555 7899999999999998777777889999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
|+|+++.. .......+..+ ... ...|+++++||+|+.+... .+++.+.++... .. ..+++++||++|.
T Consensus 81 V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LA--DAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cC--CCcEEEEeCCCCc
Confidence 99998731 22222222222 221 2349999999999975421 123333332110 01 2389999999999
Q ss_pred cccc
Q psy12173 205 HHLH 208 (224)
Q Consensus 205 gv~~ 208 (224)
|+++
T Consensus 153 ~v~~ 156 (164)
T cd04171 153 GIEE 156 (164)
T ss_pred CHHH
Confidence 9944
No 131
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.1e-22 Score=168.27 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=132.4
Q ss_pred hhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCc
Q psy12173 31 RRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQ 109 (224)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~ 109 (224)
++...+..+.++.....+-.....|+++|.|++|||||+++++..+....+...+|..++...+.+ +...+.+||+||.
T Consensus 137 p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGl 216 (335)
T PRK12299 137 PRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGL 216 (335)
T ss_pred CccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCc
Confidence 344455666777777777788899999999999999999999987644333445677778887877 5578999999996
Q ss_pred hh-------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHH--HHHh
Q psy12173 110 EN-------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAE--EVGV 179 (224)
Q Consensus 110 ~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~--~~~~ 179 (224)
.+ ....+..+++.++++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+..... +...
T Consensus 217 i~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~ 296 (335)
T PRK12299 217 IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAAL 296 (335)
T ss_pred cCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHH
Confidence 42 23333445778999999999999888888888887776542 23478999999999997653221 1111
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
... ...+ +++++||++++|+ +++...+.+.+.+
T Consensus 297 ~~~-----~~~~--~i~~iSAktg~GI-~eL~~~L~~~l~~ 329 (335)
T PRK12299 297 ELA-----ALGG--PVFLISAVTGEGL-DELLRALWELLEE 329 (335)
T ss_pred HHH-----hcCC--CEEEEEcCCCCCH-HHHHHHHHHHHHh
Confidence 111 1123 8999999999999 5566666666554
No 132
>KOG0076|consensus
Probab=99.90 E-value=7.5e-24 Score=153.96 Aligned_cols=177 Identities=26% Similarity=0.472 Sum_probs=147.0
Q ss_pred hhhhhHHHHHhhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCCCCCCceeEEEEE
Q psy12173 21 TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNT-----SLSHNLKPTEGFNITILQ 95 (224)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~~~~~~~t~~~~~~~~~ 95 (224)
..++|.||+++ ..+.|+++|..++|||||+.+...... .......+|.+.+..++.
T Consensus 5 ~~gl~~~~~~K-------------------e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~ 65 (197)
T KOG0076|consen 5 MSGLYKYMFKK-------------------EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE 65 (197)
T ss_pred HHHHHHHHhhh-------------------hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee
Confidence 35677788777 347899999999999999998876442 111355678999999999
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE 175 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 175 (224)
.....+.+||..|++..+++|..++..+|++|+++|++++++++.....+..+..+....+.|+++.+||.|+.+...+.
T Consensus 66 v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~ 145 (197)
T KOG0076|consen 66 VCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAA 145 (197)
T ss_pred eccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999988887777899999999999999998899
Q ss_pred HHHhhcCc-ccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 EVGVALDL-SSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++...++. +....+.+ ++.++||.+|+||+ +-+..+.+.+.
T Consensus 146 El~~~~~~~e~~~~rd~--~~~pvSal~gegv~-egi~w~v~~~~ 187 (197)
T KOG0076|consen 146 ELDGVFGLAELIPRRDN--PFQPVSALTGEGVK-EGIEWLVKKLE 187 (197)
T ss_pred HHHHHhhhhhhcCCccC--ccccchhhhcccHH-HHHHHHHHHHh
Confidence 98888874 22333554 99999999999994 44444444443
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=2.2e-22 Score=156.33 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=108.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCch---------hHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE---------NVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~---------~~~~~~~~~ 119 (224)
...++|+++|++|||||||++++.+..+...+...+|.+.....+.+.+ ..+.+|||||.. .+.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 3468999999999999999999999875543445566666666666655 489999999972 222222 23
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... ... .... ++++++|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~-----~~~~--~~~~~~S 186 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERL-----EAGR--PDAVFIS 186 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHh-----hcCC--CceEEEE
Confidence 67899999999999988877655444433 33233468999999999997653222 111 1122 3899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+ +++...+.+
T Consensus 187 a~~~~gi-~~l~~~L~~ 202 (204)
T cd01878 187 AKTGEGL-DELLEAIEE 202 (204)
T ss_pred cCCCCCH-HHHHHHHHh
Confidence 9999999 444445443
No 134
>KOG0083|consensus
Probab=99.90 E-value=2.7e-24 Score=149.90 Aligned_cols=149 Identities=21% Similarity=0.353 Sum_probs=119.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
++|+.++|||+|+-|+..+.|...+ ..+|++..+. .+..+ .+++.+|||.||+++++....+++.+|+.++++|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~-fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999999998876522 3356664443 34443 48899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.+..||++...|+.++..+.. ..+.+.+++||+|+.++ .+.+.+.+.+++ ||.++||++|.|++
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i----------pfmetsaktg~nvd 149 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI----------PFMETSAKTGFNVD 149 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC----------CceeccccccccHh
Confidence 999999999999999877643 46788999999999664 233445555554 99999999999997
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
-.|...+.+.
T Consensus 150 ~af~~ia~~l 159 (192)
T KOG0083|consen 150 LAFLAIAEEL 159 (192)
T ss_pred HHHHHHHHHH
Confidence 7766544443
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=1.9e-22 Score=151.99 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-EEEEEEcCCchh-------HHHHHHhhccCCCE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-TLNIFELGGQEN-------VRRFWNTYFEDTDL 125 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 125 (224)
+|+++|.+|+|||||++++.+..........+|.......+..++. .+.+|||||+.. ....+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976643222223344555555666665 999999999631 11122223557999
Q ss_pred EEEEEECCCC-CCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCCCHHHHHh-hcCcccccCcccceeEEEeecCC
Q psy12173 126 LVFVVDSADP-SKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGALSAEEVGV-ALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 126 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+++|+|++++ ++++....|...+..... ..++|+++|+||+|+.+.....+..+ ..... ..++++++||++
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~ 155 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL------WGKPVFPISALT 155 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC------CCCCEEEEecCC
Confidence 9999999999 788888877777755421 24689999999999976543333222 22110 123899999999
Q ss_pred CCccccch
Q psy12173 203 NLHHLHVS 210 (224)
Q Consensus 203 ~~gv~~~~ 210 (224)
+.|+++.+
T Consensus 156 ~~gi~~l~ 163 (170)
T cd01898 156 GEGLDELL 163 (170)
T ss_pred CCCHHHHH
Confidence 99994444
No 136
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=3.6e-22 Score=150.08 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.|+++|++|+|||||+++|....+........|.......+..+ +..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 68999999999999999999888665322233434444444443 678999999999999988888889999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc---CcccccCcccceeEEEeecCCCCccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL---DLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+++..... ....+..+ .. .++|+++|+||+|+.... .+.....+ ...........++++++||++|.|+
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi- 154 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI- 154 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCH-
Confidence 999864322 22222222 22 478999999999987542 22222211 1110000111238999999999999
Q ss_pred cchHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMY 219 (224)
Q Consensus 208 ~~~~~~i~~~l~ 219 (224)
+++.+.+.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 556656655443
No 137
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.6e-23 Score=153.08 Aligned_cols=143 Identities=23% Similarity=0.297 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh------HHHHHHhh--ccCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------VRRFWNTY--FEDTD 124 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~--~~~~d 124 (224)
++|+++|.|++|||||+|+|++.+....+....|.+.....+...+..+.++|+||.-+ .+.....+ .++.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 48999999999999999999999976666667788888888999999999999999321 12222233 36899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|+++. +.......++.. .++|+++++||+|+... .+.+.+.+.++. +++++||
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~----------pvi~~sa 143 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV----------PVIPVSA 143 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-----------EEEEBT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC----------CEEEEEe
Confidence 99999999984 333344444444 38999999999998653 456677777654 9999999
Q ss_pred CCCCccccchHHH
Q psy12173 201 PSNLHHLHVSVVE 213 (224)
Q Consensus 201 ~~~~gv~~~~~~~ 213 (224)
++++|+ +++.++
T Consensus 144 ~~~~g~-~~L~~~ 155 (156)
T PF02421_consen 144 RTGEGI-DELKDA 155 (156)
T ss_dssp TTTBTH-HHHHHH
T ss_pred CCCcCH-HHHHhh
Confidence 999999 444443
No 138
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=2e-22 Score=163.55 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=104.2
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---------------CeEEEEEEcCC
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---------------EYTLNIFELGG 108 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---------------~~~~~l~D~~G 108 (224)
.......+||+++|+.|+|||||++++..+.|.. .+.+|++... ..+.++ .+.+.+|||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCccc--ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 3445678999999999999999999999998877 6778887543 344432 36799999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-----------CCCCcEEEEEeCCCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-----------LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~ 171 (224)
+++++.++..+++++|++|+|+|+++.++++++..|+..+..... ..++|++||+||+|+...
T Consensus 93 qErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 93 HERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999999998876521 135899999999999654
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=5.9e-22 Score=163.75 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=126.7
Q ss_pred cCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh
Q psy12173 33 QSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN 111 (224)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~ 111 (224)
...+..+.++.....+-.....|+++|.+++|||||+++++..+....+...+|..++...+.+.+ ..+.+||+||..+
T Consensus 138 ~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 138 FATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 344455666677777777889999999999999999999998764433334566777777777766 8999999999742
Q ss_pred -------HHHHHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHHHHHhh
Q psy12173 112 -------VRRFWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAEEVGVA 180 (224)
Q Consensus 112 -------~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~ 180 (224)
....+..+++.++++++|+|+++. ++++....|..++.... ....+|+++|+||+|+.+....+++.+.
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~ 297 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKE 297 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHH
Confidence 222333446789999999999986 56777777766665432 2347899999999999765333333333
Q ss_pred cCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 181 LDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
+.. ... .+++++||++++|+ +++...+.+.
T Consensus 298 l~~----~~~--~~vi~iSAktg~GI-~eL~~~I~~~ 327 (329)
T TIGR02729 298 LKK----ALG--KPVFPISALTGEGL-DELLYALAEL 327 (329)
T ss_pred HHH----HcC--CcEEEEEccCCcCH-HHHHHHHHHH
Confidence 211 011 28999999999999 5555555544
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=1e-21 Score=163.70 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=110.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCc---------hhHHHHHHhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQ---------ENVRRFWNTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~---------~~~~~~~~~~~ 120 (224)
..++|+++|.+|+|||||+|+|++..+...+...+|.++....+.+ ++..+.+|||+|. +.++..+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 4589999999999999999999998755444567788888888887 5689999999997 23444333 47
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++++|+|++++.+......+. .++......++|+++|+||+|+.+.. +...... ... +++++||
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~--~~i~iSA 334 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYP--EAVFVSA 334 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCC--CEEEEEc
Confidence 8999999999999998776654433 33333223478999999999996542 2221111 112 6899999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +.+...+.+
T Consensus 335 ktg~GI-~eL~~~I~~ 349 (351)
T TIGR03156 335 KTGEGL-DLLLEAIAE 349 (351)
T ss_pred cCCCCH-HHHHHHHHh
Confidence 999999 555555544
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=2.5e-21 Score=149.37 Aligned_cols=151 Identities=21% Similarity=0.214 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--------------CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS--GNTSLSHN--------------LKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~--~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
..+|+++|++++|||||++++.. +.|..... ...+.......+.+++..+.+|||||++++...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999997 44433110 111222233445667899999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCcccc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSRQHR 192 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 192 (224)
+..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+.+.... ++..+.+..........+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 88999999999999999885 23333333443332 37899999999999754222 222332211011112223
Q ss_pred eeEEEeecCCCCccc
Q psy12173 193 IKLIATQAPSNLHHL 207 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~ 207 (224)
++++++||++|.|+.
T Consensus 157 ~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 157 FPVLYASAKNGWASL 171 (194)
T ss_pred cCEEEeehhcccccc
Confidence 489999999999984
No 142
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=2.9e-21 Score=146.81 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CCC---CCCCCCCC------c--ee--EEEE-----EeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN--TSL---SHNLKPTE------G--FN--ITIL-----QKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~--~~~---~~~~~~t~------~--~~--~~~~-----~~~~~~~~l~D~~G~~~~ 112 (224)
.+|+++|++++|||||++++.+.. +.. ...+.++. + +. .... ...+..+.+|||||++++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998742 110 00122211 1 11 1112 224578999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSR 189 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 189 (224)
...+..+++.+|++|+|+|++++.+......+. .... .++|+++|+||+|+.+.... +++.+.++. .
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~ 150 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----D 150 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----C
Confidence 998888999999999999999876665554443 2222 36899999999998653221 223332221 1
Q ss_pred ccceeEEEeecCCCCccccchHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.. .++++||++|.|+++ +...+.+
T Consensus 151 ~~--~~~~~Sa~~g~gi~~-l~~~l~~ 174 (179)
T cd01890 151 PS--EAILVSAKTGLGVED-LLEAIVE 174 (179)
T ss_pred cc--cEEEeeccCCCCHHH-HHHHHHh
Confidence 12 589999999999954 4444443
No 143
>KOG0072|consensus
Probab=99.88 E-value=1.7e-22 Score=142.51 Aligned_cols=161 Identities=34% Similarity=0.593 Sum_probs=144.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
...+++++|--|+|||+++.++...+.. ...||.+++...+.+++.++.+||+.|+.+.+..|..++.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv---ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV---TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc---ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 4579999999999999999999877633 5679999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|.+|.+........+..++++..+.+..+++++||.|........|....+++...+.+.| .++++||.+|+|++ +.
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~--~Iv~tSA~kg~Gld-~~ 170 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW--QIVKTSAVKGEGLD-PA 170 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee--EEEeeccccccCCc-HH
Confidence 9999999999999999999988888899999999999999888999999999988888888 99999999999994 44
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
.+-+.+.
T Consensus 171 ~DWL~~~ 177 (182)
T KOG0072|consen 171 MDWLQRP 177 (182)
T ss_pred HHHHHHH
Confidence 4344333
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.88 E-value=5e-21 Score=141.37 Aligned_cols=148 Identities=23% Similarity=0.328 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|.+|+|||||++++....++. .+.++++ +....+..++ ..+.+||+||+.++...+....+.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFIT--EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcC--cCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 699999999999999999999998666 3444444 3333355666 789999999999999888888899999999
Q ss_pred EEECCCC-CCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADP-SKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|.... .++.... .+...+..... .+.|+++++||.|+......++....+... .. .+++++||++|.|+
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~--~~~~~~sa~~~~gv 152 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NG--EPIIPLSAETGKNI 152 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cC--CceEEeecCCCCCH
Confidence 9999877 6666655 45554444432 278999999999997653333333333221 12 27999999999999
Q ss_pred ccc
Q psy12173 207 LHV 209 (224)
Q Consensus 207 ~~~ 209 (224)
++.
T Consensus 153 ~~~ 155 (161)
T TIGR00231 153 DSA 155 (161)
T ss_pred HHH
Confidence 443
No 145
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.6e-21 Score=163.13 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=125.9
Q ss_pred hcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCch
Q psy12173 32 RQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110 (224)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~ 110 (224)
+...+..+.++.....+-.....|+++|.+++|||||+++++..+....+....|..++...+.+. +..+.+||+||..
T Consensus 138 ~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 138 RIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred CcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCc
Confidence 334444555666666777778899999999999999999999877444334456777777777776 6899999999964
Q ss_pred h-------HHHHHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCC-CHHHHH
Q psy12173 111 N-------VRRFWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGAL-SAEEVG 178 (224)
Q Consensus 111 ~-------~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~-~~~~~~ 178 (224)
+ ....+..+++.++++++|+|+++. ++++....+..++.... ...++|+++|+||+|+.+.. ..+++.
T Consensus 218 ega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~ 297 (424)
T PRK12297 218 EGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFK 297 (424)
T ss_pred ccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHH
Confidence 2 112223346679999999999865 56676666666665532 23478999999999985331 112222
Q ss_pred hhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 179 VALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+.+. + +++++||+++.|+ +++...+.+.+.+.
T Consensus 298 ~~l~--------~--~i~~iSA~tgeGI-~eL~~~L~~~l~~~ 329 (424)
T PRK12297 298 EKLG--------P--KVFPISALTGQGL-DELLYAVAELLEET 329 (424)
T ss_pred HHhC--------C--cEEEEeCCCCCCH-HHHHHHHHHHHHhC
Confidence 2222 2 8999999999999 66667777766554
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=7.9e-21 Score=164.80 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCc----------hhHHHHH-Hh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQ----------ENVRRFW-NT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~-~~ 118 (224)
..++|+++|.+++|||||+++|++..+... .....|.++....+.+++..+.+|||||. +.+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 458999999999999999999998875322 22333444555667778888999999995 3333332 34
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+........+.+... .. ....++++++
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~-l~-~~~~~~~~~~ 362 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRE-LA-QVPWAPRVNI 362 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHh-cc-cCCCCCEEEE
Confidence 578999999999999987776653 3443332 478999999999997542222222222110 11 1112389999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +++...+.+.+.+
T Consensus 363 SAk~g~gv-~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAV-DKLVPALETALES 383 (472)
T ss_pred ECCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5566666666654
No 147
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=3.7e-21 Score=150.89 Aligned_cols=166 Identities=22% Similarity=0.240 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--C--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--G--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.+.. .+.+|.+........ . ...+.+|||+|+++++..+..++.++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPE--GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcc--cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 4899999999999999999999999888 677776644443332 2 477999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-HHhhcC----cc-----cccCcccceeEEE
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-VGVALD----LS-----SISSRQHRIKLIA 197 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~----~~-----~~~~~~~~~~~~~ 197 (224)
+|+|..+..+..+....|...+........|+++++||+|+........ +..... .. ..........+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999999666666555555444433224699999999999987633211 111100 00 0000111124899
Q ss_pred eecC--CCCccccchHHHHHHHHH
Q psy12173 198 TQAP--SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~--~~~gv~~~~~~~i~~~l~ 219 (224)
+|++ .+.|+++.+...+.....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999997666666655543
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.87 E-value=3.4e-21 Score=143.20 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=100.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--cCCCEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--EDTDLLVF 128 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~d~ii~ 128 (224)
++|.+|+|||||++++.+..+........|.......+.+++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999988654422333455566667777788999999999876442 234444 49999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|+.+++... .++..+.. .++|+++++||+|+.+..... +....... . +++++++||++|.|+
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~iSa~~~~~~- 145 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL-----L--GVPVVPTSARKGEGI- 145 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh-----h--CCCeEEEEccCCCCH-
Confidence 99999865432 33333332 368999999999997652221 11111110 1 128999999999999
Q ss_pred cchHHHHHHHH
Q psy12173 208 HVSVVEAEQAM 218 (224)
Q Consensus 208 ~~~~~~i~~~l 218 (224)
+.+...+.++.
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 149
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5.2e-21 Score=164.16 Aligned_cols=180 Identities=21% Similarity=0.187 Sum_probs=126.1
Q ss_pred cCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh-
Q psy12173 33 QSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN- 111 (224)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~- 111 (224)
.+....+.++.....+-.....|+++|.|++|||||+++|+..+....+...+|..++...+...+..+.+||+||...
T Consensus 140 ~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 140 FALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred cccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 3445566677777777788899999999999999999999987755444556777888888888889999999999532
Q ss_pred ---HH---HHHHhhccCCCEEEEEEECCCC----CCHHHHHHHHHHHHhcC----------CCCCCcEEEEEeCCCCCCC
Q psy12173 112 ---VR---RFWNTYFEDTDLLVFVVDSADP----SKLPVAAMELKNLLGDQ----------RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ---~~---~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~ 171 (224)
.. .....+++.+|++++|+|+++. +.+.....+..++.... ....+|+++|+||+|+.+.
T Consensus 220 as~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 220 ASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred cchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 11 1223346789999999999863 34544444433443321 2347899999999999754
Q ss_pred CCHH-HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 172 LSAE-EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
.... .+.+.+. ...+ +++++||+++.|+ +++...+.+.+..
T Consensus 300 ~el~e~l~~~l~-----~~g~--~Vf~ISA~tgeGL-dEL~~~L~ell~~ 341 (500)
T PRK12296 300 RELAEFVRPELE-----ARGW--PVFEVSAASREGL-RELSFALAELVEE 341 (500)
T ss_pred HHHHHHHHHHHH-----HcCC--eEEEEECCCCCCH-HHHHHHHHHHHHh
Confidence 2221 2222221 1234 8999999999999 6666666666654
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=9.9e-21 Score=153.18 Aligned_cols=152 Identities=20% Similarity=0.137 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhH--------HHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENV--------RRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~~d 124 (224)
+|+++|.+|+|||||+|+|++.++...+....|+...... ...++.++.+|||||.... .......++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998865433334444433333 3345678999999996532 112344578999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..... ...+..+.. .. .+++++||++|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~~--~~v~~iSA~~g 149 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE----DF--KDIVPISALTG 149 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc----CC--CceEEEecCCC
Confidence 999999999876654 333333333 478999999999996432111 111211111 11 27999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+ +++.+.+.+.+
T Consensus 150 ~gi-~~L~~~l~~~l 163 (270)
T TIGR00436 150 DNT-SFLAAFIEVHL 163 (270)
T ss_pred CCH-HHHHHHHHHhC
Confidence 999 66666666654
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=1.5e-20 Score=156.47 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=105.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhH--------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENV--------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~ 120 (224)
.+..+|+++|.+|+|||||+++|.+.++... ....+|.+.....+..++.++.+|||||..+. .......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999886431 12334445555667778889999999997431 11122347
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... ... ..++++||
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~--~~i~~iSA 198 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPD--SLLFPISA 198 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCC--cEEEEEec
Confidence 89999999999766 355554444444333 25677899999999654 344444443211 111 27999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +++...+.+
T Consensus 199 ktg~gv-~eL~~~L~~ 213 (339)
T PRK15494 199 LSGKNI-DGLLEYITS 213 (339)
T ss_pred cCccCH-HHHHHHHHH
Confidence 999999 444444443
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=3e-21 Score=141.41 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch-----hHHHHHHhhccCCCEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE-----NVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~ii~ 128 (224)
||+++|++|+|||||++++.+..+. +.+|.+ +.+.. .+|||||+. .++.... .++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccccee-----EEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEE
Confidence 7999999999999999999987642 233332 22322 789999973 3444433 4899999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|++++.++.. ..|. .. ...|+++++||+|+.+. ...++..+..+.. ... +++++||++|.|++
T Consensus 69 v~d~~~~~s~~~-~~~~-~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~--~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 69 VQSATDPESRFP-PGFA-SI------FVKPVIGLVTKIDLAEADVDIERAKELLETA----GAE--PIFEISSVDEQGLE 134 (142)
T ss_pred EecCCCCCcCCC-hhHH-Hh------ccCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCC--cEEEEecCCCCCHH
Confidence 999999988754 2222 22 13499999999999653 2333333322211 111 79999999999995
Q ss_pred cch
Q psy12173 208 HVS 210 (224)
Q Consensus 208 ~~~ 210 (224)
+.|
T Consensus 135 ~l~ 137 (142)
T TIGR02528 135 ALV 137 (142)
T ss_pred HHH
Confidence 444
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=1.1e-20 Score=146.37 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=99.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC-----------chhHHHHHHhh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG-----------QENVRRFWNTY 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~ 119 (224)
..++|+++|.+|+|||||++++.+..+.. ...+++......+.+. .+.+||||| ++.++..+..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRV--GKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 45799999999999999999999887654 3344444433334334 689999999 56666655444
Q ss_pred c----cCCCEEEEEEECCCCCCHH---------HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcc
Q psy12173 120 F----EDTDLLVFVVDSADPSKLP---------VAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLS 184 (224)
Q Consensus 120 ~----~~~d~ii~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~ 184 (224)
+ ..++++++|+|.+....+. .....+...... .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 4 3567889999886542220 011222233222 479999999999996543 233444444321
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. ..+.+..+++++||++| |++ ++...+.+.+
T Consensus 161 ~-~~~~~~~~~~~~SA~~g-gi~-~l~~~l~~~~ 191 (201)
T PRK04213 161 P-PWRQWQDIIAPISAKKG-GIE-ELKEAIRKRL 191 (201)
T ss_pred c-cccccCCcEEEEecccC-CHH-HHHHHHHHhh
Confidence 1 01112226899999999 994 4445555544
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=3.1e-21 Score=145.97 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=103.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCchhHH-------HHHHhhccCCCEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQENVR-------RFWNTYFEDTDLLVF 128 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ii~ 128 (224)
++|++|+|||||++++.+..+.......+|.+.....+.++ +..+.+|||||..... ......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987522223344556666667777 8899999999974321 122334678999999
Q ss_pred EEECCCC------CCHHHHHHHHHHHHhcCC------CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 129 VVDSADP------SKLPVAAMELKNLLGDQR------LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 129 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
|+|++++ +++.....+...+..... ..+.|+++|+||+|+.......+.. ......... .+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~--~~~~ 155 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEG--AEVV 155 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCC--CCEE
Confidence 9999998 467776666666654322 1478999999999997653333221 001111122 3899
Q ss_pred EeecCCCCccccchHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i 214 (224)
++||+++.|+ +++.+.+
T Consensus 156 ~~Sa~~~~gl-~~l~~~l 172 (176)
T cd01881 156 PISAKTEEGL-DELIRAI 172 (176)
T ss_pred EEehhhhcCH-HHHHHHH
Confidence 9999999999 4444444
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=3.4e-20 Score=137.40 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~ 123 (224)
++|+++|++|+|||||++++.+..+...... ..+..+....+..++..+.+|||||...+.. ....++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998774321122 2233444556666788999999999654321 223457799
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|++++.+......+.. ..++|+++++||+|+.+.... .. ..+..+++++||+++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~--~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LS--LLAGKPIIAISAKTG 142 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------cc--ccCCCceEEEECCCC
Confidence 99999999999877766543322 257999999999999765322 01 111238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+ +++...+.+.
T Consensus 143 ~~v-~~l~~~l~~~ 155 (157)
T cd04164 143 EGL-DELKEALLEL 155 (157)
T ss_pred CCH-HHHHHHHHHh
Confidence 999 5555555543
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=4.1e-20 Score=160.35 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=104.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~ 120 (224)
...++|+++|.+|+|||||++++++..+... .....|.+.......+.+..+.+|||||.+. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457999999999999999999998764321 1222233445556677888999999999762 344456678
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+..+.... ... ..+++||
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~--~~~~~~~~~-----g~~--~~~~iSA 181 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGE--ADAAALWSL-----GLG--EPHPVSA 181 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccc--hhhHHHHhc-----CCC--CeEEEEc
Confidence 89999999999999866543 333333333 479999999999986532 111121111 111 3569999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+++.+ ..+.+.+
T Consensus 182 ~~g~gi~eL~-~~i~~~l 198 (472)
T PRK03003 182 LHGRGVGDLL-DAVLAAL 198 (472)
T ss_pred CCCCCcHHHH-HHHHhhc
Confidence 9999995544 4444433
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=2.9e-20 Score=142.11 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHN----------------LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWN 117 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 117 (224)
+|+++|.+|+|||||++++.+........ ...+...........+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999877554110 11223334444555678999999999999888888
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCccccc------
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSIS------ 187 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~------ 187 (224)
.+++.+|++++|+|+.++.... ....+..+.. .+.|+++++||+|+...... +++.+.++.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999999875433 2233333322 47999999999999864332 2233333322110
Q ss_pred -CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 -SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 -~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
......+++++||++|.|+ +++...+.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi-~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGV-EELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCH-HHHHHHHHhhC
Confidence 0112348999999999999 55555555443
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=1.5e-20 Score=144.76 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC----CCCC---CCCCCCCCceeEEEEEeC--------------CeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG----NTSL---SHNLKPTEGFNITILQKG--------------EYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~----~~~~---~~~~~~t~~~~~~~~~~~--------------~~~~~l~D~~G~~~ 111 (224)
++|+++|++++|||||+++++.. .+.. ......|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 1111 111224445444444443 67899999999987
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcc--c
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLS--S 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~--~ 185 (224)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+...... +++.+.+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555545567899999999999865443322221 2222 26799999999999754222 2222221100 0
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
..... .+++++||++|.|+ +++.+.+...
T Consensus 156 ~~~~~--~~vi~iSa~~g~gi-~~L~~~l~~~ 184 (192)
T cd01889 156 TRFKN--SPIIPVSAKPGGGE-AELGKDLNNL 184 (192)
T ss_pred cCcCC--CCEEEEeccCCCCH-HHHHHHHHhc
Confidence 00122 38999999999999 5555555443
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=4.4e-20 Score=158.11 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=105.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++|+++|++|+|||||+|+|++......+.+.. |.++....+.+++..+.+|||||..+... ....+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 46899999999999999999999876432223333 33455666778889999999999854332 1235678
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+.+.. |+..+.. .++|+++|+||+|+... ..+++.+.. +++++++||+
T Consensus 282 ~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~----------~~~~~~vSak 344 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSK----------VLNSSNLSAK 344 (442)
T ss_pred hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhc----------CCceEEEEEe
Confidence 99999999999998877654 5544422 37899999999999654 222221111 1278999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+ .|+ ++....+.+.+.+
T Consensus 345 ~-~gI-~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKI-KALVDLLTQKINA 361 (442)
T ss_pred c-CCH-HHHHHHHHHHHHH
Confidence 8 588 4444455555543
No 160
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=1.8e-20 Score=145.55 Aligned_cols=160 Identities=17% Similarity=0.099 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCceeEEEEEeC---------------------------C----
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT---SLSHNLKPTEGFNITILQKG---------------------------E---- 98 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~---------------------------~---- 98 (224)
++|+++|+.|+|||||++.+.+... ..+.....++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 11001111111111111110 2
Q ss_pred --eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH--
Q psy12173 99 --YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-- 174 (224)
Q Consensus 99 --~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-- 174 (224)
..+.+|||||++.+.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999999888777788999999999999753222223333333222 23579999999999754222
Q ss_pred --HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 175 --EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++.+.++.. ....++++++||++|+|+ +++...+.+.+..
T Consensus 158 ~~~~i~~~~~~~----~~~~~~i~~vSA~~g~gi-~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGT----IAENAPIIPISAQLKYNI-DVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhcc----ccCCCcEEEEeCCCCCCH-HHHHHHHHHhCCC
Confidence 2222222110 011238999999999999 5555666555443
No 161
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=7.2e-21 Score=146.08 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=109.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCCCCCCceeEEEEE--eCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL------------------SHNLKPTEGFNITILQ--KGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~------------------~~~~~~t~~~~~~~~~--~~~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+.+|....... +.....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46799999999999999999999644221 0122345556666777 788999999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcC--c-cccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALD--L-SSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~-~~~~ 187 (224)
.+.......+..+|++|+|+|+.++-. ....+.+..+.. .++|+++++||+|+... ..++..+.+. + ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 998888888999999999999998733 223344444433 47899999999999832 1112211111 0 0001
Q ss_pred Ccc-cceeEEEeecCCCCccccchHHHHHHH
Q psy12173 188 SRQ-HRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 188 ~~~-~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... ..++++++||++|.|+ +.+.+.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi-~~Ll~~l~~~ 185 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGI-DELLEALVEL 185 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTH-HHHHHHHHHH
T ss_pred cCccccceEEEEecCCCCCH-HHHHHHHHHh
Confidence 111 1349999999999999 6666555543
No 162
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=3.6e-20 Score=141.08 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCCeEEEEEEcCCch----------hHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGEYTLNIFELGGQE----------NVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 117 (224)
....+|+++|++|+|||||++++.+..+.. .+.++.+.+ ......+ ..+.+|||||.. .+.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 567899999999999999999999876433 222232221 1112222 379999999942 3333333
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcc
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 190 (224)
.+++ .++++++|+|++++-+..+. .+...+.. .++|+++++||+|+..... .+++++.++. ..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~-----~~ 162 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK-----DA 162 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh-----cc
Confidence 4444 46899999999886443332 33333333 4789999999999975422 2333333332 12
Q ss_pred cceeEEEeecCCCCccc
Q psy12173 191 HRIKLIATQAPSNLHHL 207 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~ 207 (224)
..++++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 22389999999999983
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.3e-19 Score=136.23 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=101.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhH----------HH-HHHhh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENV----------RR-FWNTY 119 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~-~~~~~ 119 (224)
.++|+++|++|+|||||++++.+..+...... ..+.......+..++..+.+|||||..+. .. .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 46899999999999999999998764321122 22333334455667788999999996432 11 11234
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
++.+|++++|+|++++.+.... ..+... .. .+.|+++++||+|+.+. ...++..+.+.... . ....+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 154 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL-P-FLDYAPIVF 154 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-c-cccCCceEE
Confidence 6799999999999998765443 222222 22 36899999999999765 23333333332111 0 111238999
Q ss_pred eecCCCCccccchHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~ 216 (224)
+||++++|+ +++...+.+
T Consensus 155 ~Sa~~~~~i-~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQGV-DKLFDAIDE 172 (174)
T ss_pred EeccCCCCH-HHHHHHHHH
Confidence 999999999 444444443
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=4.5e-20 Score=158.76 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=108.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++|+++|.+|+|||||+|+|++.... ..+....|.++....+..++..+.+|||||.++... ....+++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 222333455666677778889999999999764322 1233578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+.+.... +.. ..+.|+++|+||+|+.+..... ....+ +++++||+
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~--~~i~iSAk 353 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGK--PVIRISAK 353 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCC--ceEEEEee
Confidence 9999999999999877764432 222 2578999999999997542221 01122 79999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++...+.+.+.
T Consensus 354 tg~GI-~~L~~~L~~~l~ 370 (449)
T PRK05291 354 TGEGI-DELREAIKELAF 370 (449)
T ss_pred CCCCH-HHHHHHHHHHHh
Confidence 99999 666667766654
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.4e-20 Score=137.53 Aligned_cols=145 Identities=20% Similarity=0.185 Sum_probs=97.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhccCCCEE
Q psy12173 56 LILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFEDTDLL 126 (224)
Q Consensus 56 ~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d~i 126 (224)
+++|.+|+|||||++++.+......... ..|.+.........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998753221122 2233455556667788999999999877443 334567889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|+|..++.+... .++...+.. .+.|+++|+||+|+.+.....+ ...+. .. .+++++||++|.|+
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~--~~~~~-----~~--~~~~~~Sa~~~~gv 146 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAA--EFYSL-----GF--GEPIPISAEHGRGI 146 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHH--HHHhc-----CC--CCeEEEecccCCCH
Confidence 99999987654433 233333333 3699999999999976522211 11111 11 16899999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
+++.+.+.
T Consensus 147 -~~l~~~l~ 154 (157)
T cd01894 147 -GDLLDAIL 154 (157)
T ss_pred -HHHHHHHH
Confidence 44444443
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.5e-20 Score=158.68 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhH----------HHH-HHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENV----------RRF-WNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~-~~~ 118 (224)
..++|+++|.+++|||||++++++......... ..|.+.....+..++..+.+|||||..+. ... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 468999999999999999999998764322222 23334445556667789999999996432 111 134
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC-CCCHHHHHhhcCcccccCcccceeEEE
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG-ALSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.++.+|++++|+|++++.+.... ..+..... .++|+++|+||+|+.+ ....++..+.+.... .....+++++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vi~ 323 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL--PFLDFAPIVF 323 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc--ccCCCCceEE
Confidence 57899999999999988665543 23333322 4789999999999972 222333333332111 1111248999
Q ss_pred eecCCCCccccchHHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+||++|.|+ +++.+.+.+++..
T Consensus 324 ~SA~~g~~v-~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGV-DKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCH-HHHHHHHHHHHHH
Confidence 999999999 5555566665543
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=1.1e-19 Score=154.87 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
++|+++|.+|+|||||+|+|++..+...+....|.++....+.+.+ ..+.+|||+|..+ +... ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 6899999999999999999998775544455677777777777755 4889999999733 2222 234689
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|++++|+|++++.+......+ ..++......++|+++|+||+|+...... .... ... ... .++++||++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~~-----~~~--~~v~ISAkt 346 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DEE-----NKP--IRVWLSAQT 346 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hhc-----CCC--ceEEEeCCC
Confidence 9999999999998776665332 22222222247899999999999653111 1111 100 011 358899999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+ +.+...+.+.+.
T Consensus 347 G~GI-deL~e~I~~~l~ 362 (426)
T PRK11058 347 GAGI-PLLFQALTERLS 362 (426)
T ss_pred CCCH-HHHHHHHHHHhh
Confidence 9999 666666666653
No 168
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=3.1e-20 Score=135.75 Aligned_cols=145 Identities=20% Similarity=0.312 Sum_probs=105.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeC----CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKG----EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
++|++|+|||||++++.+... .. ...+|. ......... +..+.+||+||+..+.......++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~--~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE--EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc--ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 589999999999999999875 23 333343 444444332 6789999999999888877888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHH--hhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVG--VALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+......++..........++|+++++||+|+......+... .... .....+++++|+.++.|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA------KELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH------hhcCCcEEEEecCCCCChHHH
Confidence 99998888877764333333344689999999999997764433321 1111 111238999999999999443
Q ss_pred h
Q psy12173 210 S 210 (224)
Q Consensus 210 ~ 210 (224)
+
T Consensus 152 ~ 152 (157)
T cd00882 152 F 152 (157)
T ss_pred H
Confidence 3
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.84 E-value=1e-19 Score=160.36 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=109.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-EEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-TLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+.++|+++|++++|||||++++.+..+........|.......+.+++. .+.+|||||++.|..++...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 46689999999999999999999988766532222344444455555444 89999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc--ccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR--QHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++.. .+..+.+..... .++|+++++||+|+.+. ..+++.+.+........ ...++++++||++|.|+
T Consensus 165 VVda~dgv~-~qT~e~i~~~~~----~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISHAKA----ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCC-HhHHHHHHHHHH----cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999987632 222233332211 47899999999999653 33444444321111111 11237999999999999
Q ss_pred ccchHH
Q psy12173 207 LHVSVV 212 (224)
Q Consensus 207 ~~~~~~ 212 (224)
++.+..
T Consensus 239 ~eLl~~ 244 (587)
T TIGR00487 239 DELLDM 244 (587)
T ss_pred HHHHHh
Confidence 654443
No 170
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=7.7e-20 Score=141.93 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCC-CEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDT-DLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~ii~ 128 (224)
+|+++|++++|||||+++|..+.+.. .+.++ ..+...... .+..+.+||+||+.+++..+..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999988766 33332 333333332 367899999999999998888889998 99999
Q ss_pred EEECCCC-CCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCHHHHH
Q psy12173 129 VVDSADP-SKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSAEEVG 178 (224)
Q Consensus 129 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~ 178 (224)
|+|+++. +++.....++..++.... ..++|+++++||.|+......+.++
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~ 131 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIK 131 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHH
Confidence 9999998 678888888877765321 2579999999999998765544433
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.2e-19 Score=153.02 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=123.8
Q ss_pred CCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh-
Q psy12173 34 STPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN- 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~- 111 (224)
..+..+.++.....+-.....|+++|.||+|||||+|+|+..+....+....|.......+.+.+ ..+.++||||..+
T Consensus 141 ~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 141 KTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 33444555666666666778999999999999999999998775443344556667777777765 5699999999653
Q ss_pred ------HHHHHHhhccCCCEEEEEEECC---CCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHHHHHhhc
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSA---DPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAEEVGVAL 181 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 181 (224)
.......+++.+|++++|+|++ +.++++....++.++.... ...++|+++|+||+|+.......+..+.+
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l 300 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI 300 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHH
Confidence 1222234588999999999998 4556666666666665532 22468999999999996542222221111
Q ss_pred CcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 182 DLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 182 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
.. ...+..+++++||+++.|+ +++...+.+.+..
T Consensus 301 ~~----~~~~~~~Vi~ISA~tg~GI-deLl~~I~~~L~~ 334 (390)
T PRK12298 301 VE----ALGWEGPVYLISAASGLGV-KELCWDLMTFIEE 334 (390)
T ss_pred HH----HhCCCCCEEEEECCCCcCH-HHHHHHHHHHhhh
Confidence 10 0111126899999999999 6666677666643
No 172
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.83 E-value=1.8e-19 Score=159.26 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=109.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG---NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.|+++|++++|||||+++|++. .++.+.....|.+..+..+..++..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 46899999999999999999963 333322333455566666777779999999999999998888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCCHH----HHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALSAE----EVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|++++. ..+..+.+. ++.. .++| +++|+||+|+.+....+ ++.+.+..... .. +++++++||++|.
T Consensus 81 VDa~~G~-~~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~--~~~ii~vSA~tG~ 152 (581)
T TIGR00475 81 VDADEGV-MTQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LK--NAKIFKTSAKTGQ 152 (581)
T ss_pred EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CC--CCcEEEEeCCCCC
Confidence 9999852 222233332 2222 3677 99999999997643222 22222211000 01 2489999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+ +++...+.+.+..
T Consensus 153 GI-~eL~~~L~~l~~~ 167 (581)
T TIGR00475 153 GI-GELKKELKNLLES 167 (581)
T ss_pred Cc-hhHHHHHHHHHHh
Confidence 99 5555566555543
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.2e-19 Score=161.79 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
..+.+.|+++|+.++|||||+++|....+........|.......+.+++..+.+|||||++.|..++...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999998776542222233344455666778899999999999999998888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC--cccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS--RQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++.. ......+..... .++|+|+++||+|+.+. +.+++...+....... ....++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~~a~~----~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINHAKA----AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHHHHh----cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999998632 222233332221 47899999999999653 2333333221111111 111248999999999999
Q ss_pred ccchH
Q psy12173 207 LHVSV 211 (224)
Q Consensus 207 ~~~~~ 211 (224)
++.+.
T Consensus 441 ~eLle 445 (787)
T PRK05306 441 DELLE 445 (787)
T ss_pred hHHHH
Confidence 55443
No 174
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4.1e-19 Score=131.01 Aligned_cols=160 Identities=23% Similarity=0.358 Sum_probs=126.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CC---CCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHH
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLS-------HN---LKPTEGFNITILQKGE-YTLNIFELGGQENVRRFW 116 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-------~~---~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~ 116 (224)
......||++.|+.++||||+++++........ .. ...|+...+..+...+ ..+.++|||||++++.+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999998874211 01 1245567777777655 899999999999999999
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
...++++++.|+++|.+.+..+ -...+..++.... .+|++|++||.|+++...++++.+.++.... ..+.+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~-----~~~vi 156 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLELL-----SVPVI 156 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhccC-----CCcee
Confidence 9999999999999999999888 2334444444432 3999999999999999999999999987641 12899
Q ss_pred EeecCCCCccccchHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+|..+++..+.+......
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999996665554443
No 175
>KOG4252|consensus
Probab=99.83 E-value=2.1e-21 Score=141.92 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=134.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+|++++|..++||||++.+++.+-|.. ++..|++..... +.+ .++...+||++|++++..+...+++++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTk--dykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccc--ccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 457899999999999999999999999988 788888754433 322 45778899999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
.++||+-+|..||+....|...+.... ..+|.++|-||+|+.++ ....+.+...... .+.++.+|++..
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l-------~~RlyRtSvked 166 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-------HKRLYRTSVKED 166 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHh-------hhhhhhhhhhhh
Confidence 999999999999999999999998775 58999999999999876 3334443333221 127889999999
Q ss_pred CccccchHHHHHHHHHHhhc
Q psy12173 204 LHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~~~ 223 (224)
.|+-+.|..++.+-.+++.|
T Consensus 167 ~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 99999999888887776654
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=4e-19 Score=132.55 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchhHH--------HHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQENVR--------RFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~~ 122 (224)
..+|+++|++|+|||||++++.+...........+.. .....+...+..+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999876543222222222 2222334456889999999965322 223445788
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++|+|++++. .....++...... .+.|+++++||+|+... ....+....+.. ....++++++|++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~ 152 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE-----LGPFAEIFPISAL 152 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh-----ccCCCceEEEEec
Confidence 99999999999872 2233333333333 26899999999999742 222332222221 1112389999999
Q ss_pred CCCccccchHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQ 216 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~ 216 (224)
++.|+ +++...+.+
T Consensus 153 ~~~~~-~~l~~~l~~ 166 (168)
T cd04163 153 KGENV-DELLEEIVK 166 (168)
T ss_pred cCCCh-HHHHHHHHh
Confidence 99999 555555554
No 177
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=2.8e-19 Score=135.70 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy12173 75 GNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLG 150 (224)
Q Consensus 75 ~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 150 (224)
+.|.. .+.||++..+.. +..+ ..++.+|||+|++++...+..+++++|++|+|||++++++++....|+..+..
T Consensus 3 ~~F~~--~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDN--NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCC--CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34555 677888865543 4443 47899999999999999999999999999999999999999999999988876
Q ss_pred cCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 151 DQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 151 ~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
... .+.|+++|+||+|+.+. ...++.....+ ... +.|++|||++|.|+++.|. .+.+.+-
T Consensus 81 ~~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~--~~~~e~SAk~g~nV~~lf~-~l~~~l~ 142 (176)
T PTZ00099 81 ERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYN--TMFHETSAKAGHNIKVLFK-KIAAKLP 142 (176)
T ss_pred hcC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcC--CEEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 532 57899999999999643 33334333221 112 3799999999999966555 4444443
No 178
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=2.5e-19 Score=133.75 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc-----hhHHHHHHhhccCCCEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ-----ENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~-----~~~~~~~~~~~~~~d~ii~ 128 (224)
+|+++|.+++|||||++++.+.. .. . .++. .+.+... .+|||||. +.++... ..++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~--~-~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL--A-RKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALI-TTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc--C-ccce-----EEEECCC--CcccCCccccCCHHHHHHHH-HHHhcCCEEEE
Confidence 79999999999999999988654 22 1 1121 1222221 27999997 3333333 34789999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++.+++.. .++..+ ..++|+++++||+|+.+. ..+++.+.++.. ....+++++||++|+|+ +
T Consensus 71 v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~-----~~~~p~~~~Sa~~g~gi-~ 136 (158)
T PRK15467 71 VHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET-----GFEEPIFELNSHDPQSV-Q 136 (158)
T ss_pred EEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc-----CCCCCEEEEECCCccCH-H
Confidence 999998876532 333332 136799999999998653 344444433211 11138999999999999 5
Q ss_pred chHHHHHHHHH
Q psy12173 209 VSVVEAEQAMY 219 (224)
Q Consensus 209 ~~~~~i~~~l~ 219 (224)
++...+.+++.
T Consensus 137 ~l~~~l~~~~~ 147 (158)
T PRK15467 137 QLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHhch
Confidence 55556665553
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=5.5e-19 Score=151.96 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCc--------hhHHHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQ--------ENVRRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~~d 124 (224)
+|+++|.+|+|||||+|+|.+......... ..|.+.......+.+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998774322222 23445666777788899999999996 444555666789999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++++|+|..++.+.. ...+..++.. .++|+++|+||+|+.+.... ..+...+ .. .+++++||++|.
T Consensus 81 ~vl~vvD~~~~~~~~--d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~--~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPE--DEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----GF--GEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHH--HHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----CC--CCeEEEeCCcCC
Confidence 999999999864433 2333444433 37899999999998754221 1111111 11 168999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+ +++.+.+.+.+
T Consensus 147 gv-~~ll~~i~~~l 159 (429)
T TIGR03594 147 GI-GDLLDAILELL 159 (429)
T ss_pred Ch-HHHHHHHHHhc
Confidence 99 55555555443
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6.8e-19 Score=159.40 Aligned_cols=162 Identities=14% Similarity=0.190 Sum_probs=110.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch----------hHHHHH-Hh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE----------NVRRFW-NT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~-~~ 118 (224)
..++|+++|.+|+|||||++++++..+...... ..|.+.....+.+++..+.+|||||.. .+.... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999875322233 334445555567788889999999953 222222 34
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+....+.+.+.+........ .++++++
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~--~~~ii~i 601 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVT--WARRVNL 601 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCC--CCCEEEE
Confidence 478999999999999987776653 3333332 37899999999999764333333333221110111 2378999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +.+.+.+.+.+.+
T Consensus 602 SAktg~gv-~~L~~~i~~~~~~ 622 (712)
T PRK09518 602 SAKTGWHT-NRLAPAMQEALES 622 (712)
T ss_pred ECCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5666666666554
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4.5e-19 Score=152.78 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=107.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchh----------HHHH-HHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQEN----------VRRF-WNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~-~~~ 118 (224)
..++|+++|.+|+|||||++++++........... |.+.....+..++..+.+|||||... +... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 46999999999999999999999866322112222 22333344556788899999999532 2211 233
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++.+|++|+|+|++++.+.... .+...... .++|+++++||+|+.+....+++.+.+.... .....++++++
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l--~~~~~~~i~~~ 324 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL--PFLDYAPIVFI 324 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc--ccccCCCEEEE
Confidence 57899999999999998665443 22233322 3789999999999975433333433332111 11123489999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +++.+.+.++...
T Consensus 325 SA~~~~gv-~~l~~~i~~~~~~ 345 (435)
T PRK00093 325 SALTGQGV-DKLLEAIDEAYEN 345 (435)
T ss_pred eCCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5566666666554
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=5.4e-19 Score=152.25 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHN-LKPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 123 (224)
++|+++|.+|+|||||+++|.+........ ...|.+.....+.+++..+.+|||||++. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999877432212 22344566677778889999999999876 333445568899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+. .....+...+. .. .++++||++|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg-----~~--~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLG-----LG--EPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcC-----CC--CCEEEEeeCC
Confidence 9999999999864433 2233333333 37899999999997542 12222222211 11 4889999999
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
.|+++.+ +.+.
T Consensus 148 ~gv~~l~-~~I~ 158 (435)
T PRK00093 148 RGIGDLL-DAIL 158 (435)
T ss_pred CCHHHHH-HHHH
Confidence 9995444 4443
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=5.8e-19 Score=136.06 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=99.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCCeEEEEEEcCCc----------hhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGEYTLNIFELGGQ----------ENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~----------~~~~~~~~ 117 (224)
...++|+++|++|+|||||++++++..+.. .+.++.+.... ... .+.++.+|||||. +.+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLA--RTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 356899999999999999999999876544 33333332211 111 2468999999994 34444444
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccccee
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
.++. .++++++|+|.+++.+... .++...+.. .+.|+++++||+|+.+....++..+.+... ..... .+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~--~~ 170 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGD--DE 170 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcC--Cc
Confidence 4444 3468889999887644332 233333333 478999999999997643222222211110 01112 28
Q ss_pred EEEeecCCCCccccchHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++++||++|.|+ +++.+.+.+.+
T Consensus 171 ~~~~Sa~~~~gi-~~l~~~i~~~~ 193 (196)
T PRK00454 171 VILFSSLKKQGI-DELRAAIAKWL 193 (196)
T ss_pred eEEEEcCCCCCH-HHHHHHHHHHh
Confidence 999999999999 66666666554
No 184
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=8.3e-19 Score=143.56 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=102.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhHH--------HHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENVR--------RFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 121 (224)
+.-.|+++|.+|+|||||+|++++.+....+....|+...... ...++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4557999999999999999999998764433333344433333 23355899999999964322 22344578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+.. ... .++++++||
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~--~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMD--FAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCC--CCeEEEecC
Confidence 99999999999983 33333444444433 36899999999999743 222222222211 011 238999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+ +++...+.+.+
T Consensus 154 ~~~~gv-~~L~~~L~~~l 170 (292)
T PRK00089 154 LKGDNV-DELLDVIAKYL 170 (292)
T ss_pred CCCCCH-HHHHHHHHHhC
Confidence 999999 55555555443
No 185
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.82 E-value=2.9e-20 Score=132.09 Aligned_cols=112 Identities=25% Similarity=0.467 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC--CCcee--EEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKP--TEGFN--ITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~--t~~~~--~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+|+|++|+|||||+++|.+..+.......+ ...+. ..........+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761111111 12222 222223445699999999998887666668999999999
Q ss_pred EECCCCCCHHHHHHH---HHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 130 VDSADPSKLPVAAME---LKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 167 (224)
||++++++++.+.++ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887544 4444432 24699999999998
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.81 E-value=6.7e-19 Score=139.64 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=112.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhH--------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENV--------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~--------~~~~~~~~ 120 (224)
++.--|+++|.|++|||||+|++.+.+....+.-..|+.....- ...++.++.++||||..+- .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45567999999999999999999999976655555566544444 4557899999999994432 22234457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEee
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..+|+++||+|++++ +....+++.+.++. .+.|+++++||.|..++.. ...+.+.+... .... .++++|
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~--~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFK--EIVPIS 153 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcc--eEEEee
Confidence 899999999999986 33345555555544 4689999999999987744 23333333221 1222 899999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +.+.+.+...|-
T Consensus 154 A~~g~n~-~~L~~~i~~~Lp 172 (298)
T COG1159 154 ALKGDNV-DTLLEIIKEYLP 172 (298)
T ss_pred ccccCCH-HHHHHHHHHhCC
Confidence 9999999 777766666543
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=7.7e-19 Score=157.10 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=107.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.++|+++|++++|||||+++|....+........|.......+.+ .+..+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 46789999999999999999999987765422222233222333332 35899999999999999999888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC--cccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS--RQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|++++.... ..+.+..+. . .++|+++++||+|+... ..+++.+.+....... ....++++++||++|
T Consensus 322 aILVVDA~dGv~~Q-T~E~I~~~k-~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQ-TIEAINYIQ-A---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChh-hHHHHHHHH-h---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999998863322 222333322 1 47899999999999753 2333333332111000 111248999999999
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
.|+++ +...+.
T Consensus 396 ~GIde-Lle~I~ 406 (742)
T CHL00189 396 TNIDK-LLETIL 406 (742)
T ss_pred CCHHH-HHHhhh
Confidence 99954 444443
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=6.2e-19 Score=159.50 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH----------HHHhh-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR----------FWNTY- 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~- 119 (224)
...+|+++|++|+|||||+|++++.+....+....|.+.....+.+++.++.+|||||..++.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3568999999999999999999988765544444555556666777889999999999876532 11222
Q ss_pred -ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcccccCccccee
Q psy12173 120 -FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~ 194 (224)
.+.+|++++|+|+++.++.. .++.++.. .++|+++++||+|+.++... +++.+.+ +++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L----------G~p 144 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL----------GCP 144 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh----------CCC
Confidence 35899999999999875532 23334333 37999999999998754222 2222222 238
Q ss_pred EEEeecCCCCccccchHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++++||++|+|+ +++.+.+.+..
T Consensus 145 VvpiSA~~g~GI-deL~~~I~~~~ 167 (772)
T PRK09554 145 VIPLVSTRGRGI-EALKLAIDRHQ 167 (772)
T ss_pred EEEEEeecCCCH-HHHHHHHHHhh
Confidence 999999999999 56666666543
No 189
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=7.4e-19 Score=136.99 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------CCCCCCCceeEEEEEeCCeEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-------------------------------HNLKPTEGFNITILQKGEYTLN 102 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 102 (224)
+|+++|++++|||||+++|+...-... .....|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975331110 0122234444555667788999
Q ss_pred EEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhh
Q psy12173 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVA 180 (224)
Q Consensus 103 l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~ 180 (224)
+|||||++++.......++.+|++++|+|++++.. ..... ...+.... ...++|+|+||+|+.+... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887666667899999999999988632 22222 22222221 2345788999999965311 1122111
Q ss_pred cCc--ccccCcccceeEEEeecCCCCccccch
Q psy12173 181 LDL--SSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
++. ....... .+++++||++|.|+++..
T Consensus 157 ~~~~~~~~~~~~--~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 157 YLAFAAKLGIED--ITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHcCCCC--ceEEEEeCCCCCCCccCC
Confidence 110 0011111 279999999999996543
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=7.1e-19 Score=146.69 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
..|+++|-||+|||||+|||++.+....+++. -|-+..+....+.+..+.++||+|.+. .+.+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998865443443 456678888999999999999999652 22344556789
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
||++|||+|...+ .....+.+..++.. .++|+++|+||+|-... .+...+.+.+. .. +++++||.+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efyslG-----~g--~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSLG-----FG--EPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhcC-----CC--CceEeehhh
Confidence 9999999999986 44455666666664 47999999999998733 22222333221 11 799999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+ ..+.+++.+.+
T Consensus 150 g~Gi-~dLld~v~~~l 164 (444)
T COG1160 150 GRGI-GDLLDAVLELL 164 (444)
T ss_pred ccCH-HHHHHHHHhhc
Confidence 9999 66666666554
No 191
>KOG1673|consensus
Probab=99.81 E-value=7.4e-20 Score=130.84 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=133.6
Q ss_pred cccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhc
Q psy12173 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYF 120 (224)
Q Consensus 45 ~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~ 120 (224)
+.....-.+||.++|++..|||||+-.+.++.+.+ .+..+.|.+. +.+..+ +..+.+||++|++++..+.....
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de--~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac 90 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDE--EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIAC 90 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHH--HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceee
Confidence 33344567899999999999999999999999877 6667777554 344444 47899999999999999998889
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.++-+++|+||.+.++++..+.+|+.+..+... ..--|++++|.|+.-..+.+...+.....+.-.+.++++.+.||+
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence 999999999999999999999999999877642 333488999999977655555444443333233555669999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
....|+.+.|...+.+.+
T Consensus 169 s~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLF 186 (205)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 999999888887766654
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=1e-18 Score=129.01 Aligned_cols=152 Identities=19% Similarity=0.164 Sum_probs=101.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeC-CeEEEEEEcCCchhHH-------HHHHhhccCCCEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKG-EYTLNIFELGGQENVR-------RFWNTYFEDTDLLV 127 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ii 127 (224)
++|++|+|||||++++.+....... ....+........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987655222 2222333444444444 6799999999976543 23345678999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+|.++........ +...... .+.|+++++||+|+.......+.......... ....++++++||+++.|+
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sa~~~~~v- 152 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILL--LLLGLPVIAVSALTGEGI- 152 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcc--cccCCceEEEeeeccCCH-
Confidence 999999987766654 2222222 47999999999999876444433211111111 222348999999999999
Q ss_pred cchHHHHHH
Q psy12173 208 HVSVVEAEQ 216 (224)
Q Consensus 208 ~~~~~~i~~ 216 (224)
+++.+.+.+
T Consensus 153 ~~l~~~l~~ 161 (163)
T cd00880 153 DELREALIE 161 (163)
T ss_pred HHHHHHHHh
Confidence 555555443
No 193
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=2.1e-18 Score=152.69 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCC----------CCCceeEEEEEe---C--CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-----SHNLK----------PTEGFNITILQK---G--EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~~~~----------~t~~~~~~~~~~---~--~~~~~l~D~~G~~ 110 (224)
+..+++++|+.++|||||+++|+...... .+.+. .|.......+.+ + ...+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35699999999999999999998752110 00111 122222223333 2 2789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCccccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 187 (224)
++...+..++..+|++|+|+|++++.+......|+... . .+.|+++|+||+|+.+.... +++.+.++.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~---- 152 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL---- 152 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC----
Confidence 99988888999999999999999987766655554433 2 36899999999999654211 233333321
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... .++++||++|.|+ +++.+.+.+.+
T Consensus 153 -~~~--~vi~vSAktG~GI-~~Lle~I~~~l 179 (595)
T TIGR01393 153 -DAS--EAILASAKTGIGI-EEILEAIVKRV 179 (595)
T ss_pred -Ccc--eEEEeeccCCCCH-HHHHHHHHHhC
Confidence 111 5899999999999 44555554433
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=1.2e-18 Score=149.59 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=103.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-------------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+...-.. +.....|.+.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 467899999999999999999998432110 0123345556666777788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----- 173 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----- 173 (224)
..+.+|||||++.+.......+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887655555789999999999997322322222222222221 2347999999999975211
Q ss_pred -HHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 174 -AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+.+....+.... ++++++||++|.|+++.
T Consensus 162 ~~~~i~~~l~~~g~~~~~--~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDD--IPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHhhCCCcCc--ceEEEeecccCCCcccc
Confidence 12333333221111112 38999999999999653
No 195
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=1.1e-18 Score=137.16 Aligned_cols=150 Identities=16% Similarity=0.159 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCCCCCceeEEEEEeCCeEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS-------------------------------LSHNLKPTEGFNITILQKGEYTLN 102 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 102 (224)
+|+++|++++|||||+.+|+...-. .+.....|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999742100 000112233455566777889999
Q ss_pred EEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC------CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CC--
Q psy12173 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS------KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LS-- 173 (224)
Q Consensus 103 l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~-- 173 (224)
+|||||+..+.......++.+|++++|+|++++. ........+... ... ..+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888877767788999999999999852 111222222222 221 23689999999999742 11
Q ss_pred -HHHHHhhcC----cccccCcccceeEEEeecCCCCcccc
Q psy12173 174 -AEEVGVALD----LSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 174 -~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+++.+.++ ........ ++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~--~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKD--VPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCC--ceEEEeecCcCCCCCc
Confidence 223333221 11111122 3899999999999964
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=3.8e-18 Score=154.53 Aligned_cols=153 Identities=19% Similarity=0.152 Sum_probs=102.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 121 (224)
...+|+++|.+++|||||+|+|++......... ..|.+.......+++..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 457899999999999999999998764321121 2233344445566788999999999653 3445556789
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++|+|+|+++. +......+...+.. .++|+++|+||+|+.... .+..+...+ ... ..+++||+
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-----g~~--~~~~iSA~ 419 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-----GLG--EPYPISAM 419 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-----CCC--CeEEEECC
Confidence 99999999999875 33344444444443 479999999999986531 111222111 111 45789999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+ +.+.+.+
T Consensus 420 ~g~GI~eLl-~~i~~~l 435 (712)
T PRK09518 420 HGRGVGDLL-DEALDSL 435 (712)
T ss_pred CCCCchHHH-HHHHHhc
Confidence 999995444 4444443
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=9.6e-19 Score=150.15 Aligned_cols=155 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|+.++|||||+.+|+... ... +.....|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 467899999999999999999998521 110 0011234445555666678
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGALS---- 173 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---- 173 (224)
..+.+|||||++++.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 9999999999999877666678899999999999998543111 11111222221 2357999999999964211
Q ss_pred --HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 174 --AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+++.+.++........ ++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~--~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDT--VPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCccc--ceEEEeeccccccccc
Confidence 12222222211111122 3899999999999965
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=3e-18 Score=135.64 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH-------HHHHhhccCCCEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR-------RFWNTYFEDTDLL 126 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~i 126 (224)
+|+++|++|+|||||+++|++......+...+|.+.....+.+++..+.+||+||..+.. ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999998774433334456666777788889999999999975322 2334568999999
Q ss_pred EEEEECCCCC
Q psy12173 127 VFVVDSADPS 136 (224)
Q Consensus 127 i~v~d~~~~~ 136 (224)
++|+|+++++
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999998764
No 199
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=6e-18 Score=130.31 Aligned_cols=149 Identities=19% Similarity=0.130 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
.++|+++|..++|||||+++|+..... .+.....|.......+..++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999864100 0001122333333445556789999999999988877
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCcccccCc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSISSR 189 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~ 189 (224)
....+..+|++++|+|+..+-. ......+..+ .. .++| +|+++||+|+..+.. .+ ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7777899999999999987522 2223333333 32 3566 789999999964311 12 22222221111111
Q ss_pred ccceeEEEeecCCCCccc
Q psy12173 190 QHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~ 207 (224)
+++++++||++|.|+.
T Consensus 157 --~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 --NTPIVRGSALKALEGD 172 (195)
T ss_pred --CCeEEEeeCccccCCC
Confidence 3589999999999874
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=6.3e-18 Score=141.06 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=122.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchh----------HHH-HHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQEN----------VRR-FWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~-~~~ 117 (224)
...++|+++|-|++|||||+|++++..-...+ ....|.+.-...+++++.++.++||.|..+ |.. ...
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 35689999999999999999999998744322 333455566777888999999999999432 222 123
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
..+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+.+. ...++.++.+......... +++
T Consensus 256 ~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~--a~i 328 (444)
T COG1160 256 KAIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF--API 328 (444)
T ss_pred hHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC--CeE
Confidence 447889999999999998 66666666666665 58999999999999776 5556665555542222233 499
Q ss_pred EEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
+.+||++|.|+ ..+...+.++...+.
T Consensus 329 ~~iSA~~~~~i-~~l~~~i~~~~~~~~ 354 (444)
T COG1160 329 VFISALTGQGL-DKLFEAIKEIYECAT 354 (444)
T ss_pred EEEEecCCCCh-HHHHHHHHHHHHHhc
Confidence 99999999999 666677777776543
No 201
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=1.7e-18 Score=153.18 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=96.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH------HHhh--ccCCCEEEEEE
Q psy12173 59 GLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF------WNTY--FEDTDLLVFVV 130 (224)
Q Consensus 59 G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~--~~~~d~ii~v~ 130 (224)
|++|+|||||+|++++.++...+....|.+.....+.+++.++.+|||||+.++... ...+ .+.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999988655333334445555667778888999999998765432 2222 24789999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|.++.+.. ..+..++.. .++|+++++||+|+.++.. .+++.+.++ ++++++||++|.|+
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg----------~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLG----------VPVVPTSATEGRGI 143 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC----------CCEEEEECCCCCCH
Confidence 99985432 233333332 3799999999999865322 222333222 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++ +.+.+.+
T Consensus 144 ~e-L~~~i~~ 152 (591)
T TIGR00437 144 ER-LKDAIRK 152 (591)
T ss_pred HH-HHHHHHH
Confidence 54 4445444
No 202
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.8e-18 Score=149.14 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=114.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH------HHHHHhh--ccC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV------RRFWNTY--FED 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~--~~~ 122 (224)
+..+|+++|+||+|||||+|++++.+....|...-|++-....+..++..++++|+||.-+. +.....+ -..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 34579999999999999999999999777777777888888888899999999999993221 1122222 357
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|+++.|+|+++.++.-.+.-.+.++ +.|++++.|+.|+.+. .+.+++.+.++. |++++
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv----------PVv~t 144 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV----------PVVPT 144 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC----------CEEEE
Confidence 79999999999986655444433333 8999999999999764 777888888865 99999
Q ss_pred ecCCCCccccchHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~ 215 (224)
||++|.|+ +++...+.
T Consensus 145 vA~~g~G~-~~l~~~i~ 160 (653)
T COG0370 145 VAKRGEGL-EELKRAII 160 (653)
T ss_pred EeecCCCH-HHHHHHHH
Confidence 99999998 55555554
No 203
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=1.4e-17 Score=147.65 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=105.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC---CC----------CCCCCCceeEEEEEe-----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL---SH----------NLKPTEGFNITILQK-----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~---~~----------~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~ 109 (224)
.+.++++++|+.++|||||+.+|+... +.. .+ ....|+......+.+ ++..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 356799999999999999999998632 110 00 111222222333433 2588999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 186 (224)
.++...+..++..+|++|+|+|++++........+.. ... .++|+++|+||+|+.+.... +++.+.++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~--- 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI--- 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC---
Confidence 9999888888999999999999998766554444332 222 37899999999998654221 233333221
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... .++++||++|.|+ +++.+.+.+.+
T Consensus 157 --~~~--~vi~iSAktG~GI-~~Ll~~I~~~l 183 (600)
T PRK05433 157 --DAS--DAVLVSAKTGIGI-EEVLEAIVERI 183 (600)
T ss_pred --Ccc--eEEEEecCCCCCH-HHHHHHHHHhC
Confidence 112 5899999999999 55555554443
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=139.44 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT-EGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++++++|.||+|||||+|.|.+....-.++...| -+.-...+..+++++.++||.|..+-.. .....++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 468999999999999999999999885544444444 4567777889999999999999553211 1233478
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.||.+++|+|.+.+.+-. ...+... ...++|+++|.||.|+..+...... +.. ... +++.+||+
T Consensus 296 ~ADlvL~v~D~~~~~~~~--d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~~~-------~~~--~~i~iSa~ 359 (454)
T COG0486 296 EADLVLFVLDASQPLDKE--DLALIEL----LPKKKPIIVVLNKADLVSKIELESE-KLA-------NGD--AIISISAK 359 (454)
T ss_pred hCCEEEEEEeCCCCCchh--hHHHHHh----cccCCCEEEEEechhcccccccchh-hcc-------CCC--ceEEEEec
Confidence 999999999999972222 2222221 1257999999999999887543333 111 111 69999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|+|+ +.+...+.+.+...
T Consensus 360 t~~Gl-~~L~~~i~~~~~~~ 378 (454)
T COG0486 360 TGEGL-DALREAIKQLFGKG 378 (454)
T ss_pred CccCH-HHHHHHHHHHHhhc
Confidence 99999 88888888777653
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=8.7e-18 Score=149.12 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSG---NTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~---~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.|+++|+.++|||||+++|++. .+..+.....|++..+..+.. ++..+.+|||||++.|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999963 233322334555555444444 456789999999999987777778999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|++++- .....+.+ .+... .++| +++|+||+|+.++...++..+.+...........++++++||++|.|+ +
T Consensus 82 Vda~eg~-~~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI-~ 155 (614)
T PRK10512 82 VACDDGV-MAQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI-D 155 (614)
T ss_pred EECCCCC-cHHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC-H
Confidence 9998752 22223333 33333 2455 689999999975422222222221000000111238999999999999 6
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.+.+.+.+..
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 6666665543
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.77 E-value=4.9e-18 Score=144.70 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=100.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCCCCceeEEE----------------E----Ee------CCeE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---SHNLKPTEGFNITI----------------L----QK------GEYT 100 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---~~~~~~t~~~~~~~----------------~----~~------~~~~ 100 (224)
+..++|+++|++++|||||+++|.+..... +.....|+...+.. . .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997643211 00111111111000 0 00 1467
Q ss_pred EEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HH
Q psy12173 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EE 176 (224)
Q Consensus 101 ~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~ 176 (224)
+.+|||||+++|...+......+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888877788999999999999763222333333332 221 23579999999999764221 22
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
+.+.+... ... .++++++||++|.|+ +++.+.+...
T Consensus 159 i~~~l~~~--~~~--~~~ii~vSA~~g~gi-~~L~e~L~~~ 194 (406)
T TIGR03680 159 IKEFVKGT--VAE--NAPIIPVSALHNANI-DALLEAIEKF 194 (406)
T ss_pred HHhhhhhc--ccC--CCeEEEEECCCCCCh-HHHHHHHHHh
Confidence 22222110 011 248999999999999 5555555543
No 207
>KOG1489|consensus
Probab=99.77 E-value=4.9e-18 Score=135.12 Aligned_cols=175 Identities=21% Similarity=0.224 Sum_probs=129.4
Q ss_pred hcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCch
Q psy12173 32 RQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110 (224)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~ 110 (224)
+.+.+....++.....+-.....|.++|.|++|||||++++...+....+..+.|+.+....+.+++ .++.+-|.||..
T Consensus 176 ~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI 255 (366)
T KOG1489|consen 176 KFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGII 255 (366)
T ss_pred ccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCcccc
Confidence 3344555667777777777889999999999999999999999886655566677777777777765 559999999955
Q ss_pred hHHH-------HHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCCCCCC--HHHH
Q psy12173 111 NVRR-------FWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVPGALS--AEEV 177 (224)
Q Consensus 111 ~~~~-------~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~--~~~~ 177 (224)
+-.. .+..+++.|+..+||+|++.+ +.++.....+.++-.+ ..+.+.|.++|+||+|+.+... .+++
T Consensus 256 ~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L 335 (366)
T KOG1489|consen 256 EGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL 335 (366)
T ss_pred ccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence 3221 233457889999999999998 7888877777776554 3456789999999999964421 1444
Q ss_pred HhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 178 GVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.+.++. ..++++||++++|+ +.+...+++
T Consensus 336 ~~~lq~---------~~V~pvsA~~~egl-~~ll~~lr~ 364 (366)
T KOG1489|consen 336 AKRLQN---------PHVVPVSAKSGEGL-EELLNGLRE 364 (366)
T ss_pred HHHcCC---------CcEEEeeeccccch-HHHHHHHhh
Confidence 444432 14999999999999 665555543
No 208
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.7e-17 Score=130.38 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------CCC-------CCceeE-----------------EEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHN--------------LKP-------TEGFNI-----------------TILQ 95 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------------~~~-------t~~~~~-----------------~~~~ 95 (224)
+|+++|+.++|||||++++..+.|..... ... .+++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999766543110 000 111111 2233
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 173 (224)
.++..+.++||||++.+.......+. .+|++++|+|+..+.. .....+..+... .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45688999999999998765554453 7899999999987633 333333333333 4789999999999865422
Q ss_pred H----HHHHhhcCccccc-------------------CcccceeEEEeecCCCCccccchH
Q psy12173 174 A----EEVGVALDLSSIS-------------------SRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 174 ~----~~~~~~~~~~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
. +++.+.+...... .....++++.+||.+|.|+ +++.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi-~~L~ 215 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL-DLLH 215 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH-HHHH
Confidence 2 2233333311100 1122348999999999999 4444
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.76 E-value=2.2e-17 Score=145.39 Aligned_cols=115 Identities=21% Similarity=0.186 Sum_probs=81.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCceeEEEEEe----------------CCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFNITILQK----------------GEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~~~~~~~----------------~~~~~~l~D~~G~~~~ 112 (224)
+.+.|+++|++++|||||+++|.+..+... ....++++........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 346899999999999999999998876431 1223344433322211 0124889999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
..++..+++.+|++++|+|+++...... ...+..+ .. .++|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l-~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHH-HH---cCCCEEEEEECCCccc
Confidence 9988888999999999999998532221 1222222 22 3789999999999964
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.75 E-value=4.1e-17 Score=144.20 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCC--------------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG--NTSLS--------------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFW 116 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~--~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 116 (224)
.+|+++|+.++|||||+++|+.. .+... .....|+......+.+++..+.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 22210 011233344455677889999999999999999888
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccccCcccce
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 193 (224)
...++.+|++++|+|+.++ .......++..... .++|+++++||+|+.+... .+++.+.+...........+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 8889999999999999875 34555666666554 3789999999999865422 23333333211111122234
Q ss_pred eEEEeecCCCCc
Q psy12173 194 KLIATQAPSNLH 205 (224)
Q Consensus 194 ~~~~~Sa~~~~g 205 (224)
+++++||++|.+
T Consensus 157 pvl~~SA~~g~~ 168 (594)
T TIGR01394 157 PIVYASGRAGWA 168 (594)
T ss_pred cEEechhhcCcc
Confidence 899999999974
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=4.9e-17 Score=128.95 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--------C----------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL--------S----------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~--------~----------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|+.|+|||||+++++...-.. . .....|.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998642110 0 01111233455667788999999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
...+++.+|++++|+|+.++-.. ....++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 88889999999999999987432 33444444432 3789999999999875
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.75 E-value=1.7e-17 Score=141.36 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=99.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCCCCceeEEEEE------------------eC--------CeE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS---LSHNLKPTEGFNITILQ------------------KG--------EYT 100 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---~~~~~~~t~~~~~~~~~------------------~~--------~~~ 100 (224)
...++|+++|+.++|||||+.+|.+.... .+.....|+......+. .+ ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999653211 11011122221111100 00 257
Q ss_pred EEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HH
Q psy12173 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EE 176 (224)
Q Consensus 101 ~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~ 176 (224)
+.+|||||++++..........+|++++|+|++++.........+..+... ...|+++|+||+|+.+.... ++
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999998876666677889999999999764222222333322221 23479999999999764222 22
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+.+.++.. ... .++++++||++|.|+ +.+.+.+...+
T Consensus 164 i~~~l~~~--~~~--~~~ii~vSA~~g~gI-~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGT--VAE--NAPIIPVSALHKVNI-DALIEAIEEEI 200 (411)
T ss_pred HHHHhccc--cCC--CCeEEEEECCCCcCH-HHHHHHHHHhC
Confidence 22222110 011 238999999999999 55555665543
No 213
>KOG0096|consensus
Probab=99.75 E-value=5.8e-18 Score=125.08 Aligned_cols=156 Identities=17% Similarity=0.271 Sum_probs=128.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---C-CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---G-EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++++++|+.|.|||++.++...+.|.. .+.+|++....+..+ . ...+..|||.|++.+......++-+..+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee--cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 57899999999999999999999999998 889999977776554 2 38899999999999999888888889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++||+...-+..++..|..++.... .++|+++++||.|........+ ... - .+..++.++++||+++.|.
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k---~v~--~--~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAK---PVS--F--HRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccc---cce--e--eecccceeEEeeccccccc
Confidence 99999999989999999999998865 5799999999999865421111 111 1 1222349999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
+..|.-.+++.
T Consensus 158 ekPFl~LarKl 168 (216)
T KOG0096|consen 158 ERPFLWLARKL 168 (216)
T ss_pred ccchHHHhhhh
Confidence 98888766654
No 214
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=4.3e-17 Score=144.03 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=103.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------CCCCCCc----eeEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS--GNTSLSH----------NLKPTEG----FNITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~~~----------~~~~t~~----~~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
...+|+++|+.++|||||+++|+. +.+.... ....+.+ .....+.+++..+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999996 3332210 0111222 23345566889999999999999999
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCccc
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSRQH 191 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 191 (224)
.+..+++.+|++|+|+|+.++.. ......+..... .++|.++++||+|+...... +++.+.+..........
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 88889999999999999998632 233444444433 37899999999999765332 33333331101111112
Q ss_pred ceeEEEeecCCCCcc
Q psy12173 192 RIKLIATQAPSNLHH 206 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv 206 (224)
.++++++||++|.|.
T Consensus 159 ~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 159 DFPIVYASALNGIAG 173 (607)
T ss_pred CCCEEEeEhhcCccc
Confidence 348999999999853
No 215
>KOG0090|consensus
Probab=99.74 E-value=9.2e-17 Score=121.15 Aligned_cols=128 Identities=30% Similarity=0.430 Sum_probs=101.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhcc---CCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFE---DTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~ii~ 128 (224)
...|+++|+.+||||+|+-+|..+.+.. ..+++..+........-..+++|.|||.+.+.....++. .+.+++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~---TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRG---TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccC---eeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3589999999999999999999987554 334555666666666666899999999999987766666 7999999
Q ss_pred EEECCC-CCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCCCCHHHHHhhcC
Q psy12173 129 VVDSAD-PSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGALSAEEVGVALD 182 (224)
Q Consensus 129 v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 182 (224)
|+|... ..-.....+.++.++... ...++|+++++||.|+......+.+++.++
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE 171 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE 171 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence 999875 344677788888887765 345789999999999988877766655554
No 216
>KOG3883|consensus
Probab=99.74 E-value=1.2e-16 Score=114.22 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=118.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeC---CeEEEEEEcCCchhH-HHHHHhhccCCCE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKG---EYTLNIFELGGQENV-RRFWNTYFEDTDL 125 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~l~D~~G~~~~-~~~~~~~~~~~d~ 125 (224)
+..||+++|..++|||+++.++..++......+.||++- ....++.+ ...+.++||.|...+ ..+..++++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 457999999999999999999999887776677777763 33334332 268999999998777 5567888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++||+..+++||+.+...-..+-+....+.+|+++++||.|+.+. .+.+-.....+.+. ++.++++|...
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-------vkl~eVta~dR 160 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-------VKLWEVTAMDR 160 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhh-------eeEEEEEeccc
Confidence 9999999999999988776666666655567899999999999654 22222222222111 27889999988
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
..+-+.|....-
T Consensus 161 ~sL~epf~~l~~ 172 (198)
T KOG3883|consen 161 PSLYEPFTYLAS 172 (198)
T ss_pred hhhhhHHHHHHH
Confidence 887566554443
No 217
>KOG1707|consensus
Probab=99.73 E-value=4.2e-18 Score=144.80 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=123.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
....++|+++|+.|+|||||+..+....|+. ..++-.+...-+.++ +.+...++|++..+..+......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3568999999999999999999999999887 555544433333333 457799999997777777767779999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCH--HH-HHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSA--EE-VGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++.+++++++.+...|..++.... +..+|+|+|+||+|....... +. ..-.+. ..... ..+++|||+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~---~f~Ei--EtciecSA~ 158 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI---AFAEI--ETCIECSAL 158 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH---HhHHH--HHHHhhhhh
Confidence 999999999999999998888887643 457999999999999876333 22 111110 00011 168999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+..++ .+.+..+++++..+
T Consensus 159 ~~~n~-~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 159 TLANV-SELFYYAQKAVIHP 177 (625)
T ss_pred hhhhh-Hhhhhhhhheeecc
Confidence 99999 55555777766544
No 218
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.73 E-value=3e-18 Score=128.96 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=86.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHh---hccCCCE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNT---YFEDTDL 125 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~ 125 (224)
...|+++|+.|+|||+|+.+|..+.+.. +..+ +..+.. ... .+..+.++|+|||++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--T~tS-~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--TVTS-MENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B----SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC--eecc-ccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 4589999999999999999999997555 3322 233332 222 4568999999999998875444 4788999
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 126 LVFVVDSAD-PSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 126 ii~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
||||+|++. ...+.+..+.++.++... ....+|++|++||.|+........+++.++.+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~E 140 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKE 140 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHH
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHH
Confidence 999999984 345677777888777653 23578999999999999887777776666543
No 219
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.73 E-value=1.5e-16 Score=118.85 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCCeEEEEEEcCCch----------hHHHHHHhhc-
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGEYTLNIFELGGQE----------NVRRFWNTYF- 120 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~- 120 (224)
.|+++|++|+|||||++.+.++.+.. ...++.+. ....+..+ ..+.+|||||.. .+......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcee--eecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999655444 22333332 22222233 389999999943 2333333333
Q ss_pred --cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 --EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
...+++++++|.....+... ..+...+.. .+.|+++++||+|+................ ........+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKE-LKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHH-HHhccCCCceEEE
Confidence 34678999999987633221 122222232 258999999999996542222221111100 0001112389999
Q ss_pred ecCCCCccccchHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~ 216 (224)
||+++.|+ +++.+.+.+
T Consensus 152 Sa~~~~~~-~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGI-DELRALIEK 168 (170)
T ss_pred ecCCCCCH-HHHHHHHHH
Confidence 99999999 555555544
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=2.2e-16 Score=127.29 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--C----------CC----------CCCCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS--L----------SH----------NLKPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~--~----------~~----------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.+|+++|++|+|||||+++|+...-. . .+ ....++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 58999999999999999999853211 0 00 00112223445677789999999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDL 183 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~ 183 (224)
++.......++.+|++|+|+|++++... ....++. .... .++|+++++||+|+..... .+++++.++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 9887677778999999999999876332 2233333 3322 4789999999999876533 4566665554
No 221
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=126.31 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=111.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch--------hHHHH-HHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE--------NVRRF-WNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~-~~~~~~ 121 (224)
..++|++.|.||+|||||++.+++.+.......+.|.+.+.+++..+...++++||||.- ....+ ....-+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 578999999999999999999999986665566788899999999999999999999921 11111 111223
Q ss_pred CCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
-.++|+|++|.+. +.+++.+...+.++... .+.|+++|.||.|..+....+++...+..... .....++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~------~~~~~~~ 317 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGG------EEPLKIS 317 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcc------cccccee
Confidence 4688999999986 56788888888888776 35999999999999876556665554432211 1355677
Q ss_pred cCCCCccc
Q psy12173 200 APSNLHHL 207 (224)
Q Consensus 200 a~~~~gv~ 207 (224)
+..+.+++
T Consensus 318 ~~~~~~~d 325 (346)
T COG1084 318 ATKGCGLD 325 (346)
T ss_pred eeehhhHH
Confidence 77777773
No 222
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=129.57 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=120.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCc---------hhHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQ---------ENVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~---------~~~~~~~~~~ 119 (224)
...+.|.++|-+|+|||||+|+|++......+..+.|+++....+... +..+.+-||.|- +.|++....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 456899999999999999999999887666678888999999999886 589999999993 345655554
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
...+|.+++|+|+++++... ..+....++.......+|+++|.||+|+..+.. ....+... .. ..+.+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~-~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~-----~~--~~v~iS 337 (411)
T COG2262 269 VKEADLLLHVVDASDPEILE-KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG-----SP--NPVFIS 337 (411)
T ss_pred hhcCCEEEEEeecCChhHHH-HHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc-----CC--CeEEEE
Confidence 67899999999999995444 344455555655556799999999999876533 11111110 01 488999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +.+...+.+.+.
T Consensus 338 A~~~~gl-~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTGEGL-DLLRERIIELLS 356 (411)
T ss_pred eccCcCH-HHHHHHHHHHhh
Confidence 9999999 888888877766
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=2.5e-16 Score=133.89 Aligned_cols=154 Identities=18% Similarity=0.074 Sum_probs=97.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-------C---------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-------T---------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|+++|+.++|||||+++|++.. + ..+.....|.+.....+..++..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 467899999999999999999997421 0 000112234444344444467889999999999988
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
.........+|++++|+|+.++.. ....+.+..+.. .++|. |+++||+|+.+... .+ ++.+.+.....
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~- 163 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF- 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC-
Confidence 766666788999999999998522 223333333332 25665 57899999975321 11 23333321111
Q ss_pred CcccceeEEEeecCCCCccccch
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
....++++++||++|.+.....
T Consensus 164 -~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 164 -PGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred -CccCccEEECccccccccCCch
Confidence 1112489999999986433433
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.72 E-value=2.7e-16 Score=138.99 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=78.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCceeEEEEEeC----C------------eEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFNITILQKG----E------------YTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~~~~~~~~----~------------~~~~l~D~~G~~~ 111 (224)
.+.+.|+++|++++|||||+++|.+...... ....++++....+.... + ..+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3567899999999999999999987653321 11222344332222110 0 1278999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
|...+...+..+|++++|+|+++.-. ......+. +... .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~-~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQ-PQTIEAIN-ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHH-HHHH---cCCCEEEEEECcCCc
Confidence 99988888899999999999998421 11122222 2222 478999999999985
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=2.6e-16 Score=133.68 Aligned_cols=148 Identities=20% Similarity=0.127 Sum_probs=95.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
..+++|+++|+.++|||||+++|++.... .+.....|.+.....+..++..+.++||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999863110 00011223333333344466789999999999988
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
.........+|++++|+|+.++-. ....+.+..+. . .++| +|+++||+|+.+... .+ ++.+.+....+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777667789999999999987522 22333333332 2 3677 788999999974321 11 222222211111
Q ss_pred CcccceeEEEeecCCCC
Q psy12173 188 SRQHRIKLIATQAPSNL 204 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~ 204 (224)
.. .++++++||++|.
T Consensus 165 ~~--~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GD--DIPVIRGSALKAL 179 (394)
T ss_pred cC--CccEEEeeccccc
Confidence 11 2489999999984
No 226
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.9e-16 Score=132.42 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=110.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+-|+++|+...|||||+..+..........-..|-....+.+.. +...+.++|||||+.|..++.....-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 4568999999999999999999987754432223343344455554 3468999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc--ceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH--RIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~g 205 (224)
+|++++++- ..+..+.+..... .++|++++.||+|.++. .++.....+....+....| .+.++++||++|+|
T Consensus 84 LVVa~dDGv-~pQTiEAI~hak~----a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV-MPQTIEAINHAKA----AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc-chhHHHHHHHHHH----CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999972 2222333333322 58999999999999854 3444444443333322222 36899999999999
Q ss_pred cccchH
Q psy12173 206 HLHVSV 211 (224)
Q Consensus 206 v~~~~~ 211 (224)
+++.+.
T Consensus 158 i~eLL~ 163 (509)
T COG0532 158 IDELLE 163 (509)
T ss_pred HHHHHH
Confidence 954443
No 227
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=128.49 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=144.2
Q ss_pred HHHHHhhhhhhHHHHHhhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE
Q psy12173 15 IIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL 94 (224)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~ 94 (224)
.-..++........+.++.+.+..+.++.....+-....-|.++|.|++|||||++.+...+....+..+.|+.++...+
T Consensus 122 ~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV 201 (369)
T COG0536 122 RGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVV 201 (369)
T ss_pred CCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEE
Confidence 33445566666777888888899999999998888889999999999999999999999988666566677877777777
Q ss_pred Ee-CCeEEEEEEcCCchhHHH-------HHHhhccCCCEEEEEEECCCCCC---HHHHHHHHHHHHhc-CCCCCCcEEEE
Q psy12173 95 QK-GEYTLNIFELGGQENVRR-------FWNTYFEDTDLLVFVVDSADPSK---LPVAAMELKNLLGD-QRLSTVPILVI 162 (224)
Q Consensus 95 ~~-~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~piilv 162 (224)
.. ....|.+-|.||..+-.+ .+..+++.|.++++|+|++..+. .++......++-.+ ..+..+|.+||
T Consensus 202 ~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv 281 (369)
T COG0536 202 RVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVV 281 (369)
T ss_pred EecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEE
Confidence 75 556799999999554322 23445788999999999997653 55555555555444 34568999999
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+||+|+... ...++..+.+.. ...|...++ +||.++.|+ +.+...+.+.+.+.
T Consensus 282 ~NKiD~~~~~e~~~~~~~~l~~----~~~~~~~~~-ISa~t~~g~-~~L~~~~~~~l~~~ 335 (369)
T COG0536 282 LNKIDLPLDEEELEELKKALAE----ALGWEVFYL-ISALTREGL-DELLRALAELLEET 335 (369)
T ss_pred EeccCCCcCHHHHHHHHHHHHH----hcCCCccee-eehhcccCH-HHHHHHHHHHHHHh
Confidence 999996554 233333333321 112211222 999999999 66666776666543
No 228
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=7.3e-16 Score=124.36 Aligned_cols=137 Identities=18% Similarity=0.088 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS------------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|++++|||||+++|+...-. .+.....|+......+.+++.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742110 0011223444556677888999999999999988888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccCcccc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 192 (224)
+...++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.+.. ..+++.+.++...+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~------ 149 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV------ 149 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce------
Confidence 88889999999999999886332 22333443332 478999999999987532 23445555543211
Q ss_pred eeEEEeecC
Q psy12173 193 IKLIATQAP 201 (224)
Q Consensus 193 ~~~~~~Sa~ 201 (224)
...+++|+.
T Consensus 150 ~~~~Pisa~ 158 (270)
T cd01886 150 PLQLPIGEE 158 (270)
T ss_pred EEEeccccC
Confidence 145666665
No 229
>KOG0077|consensus
Probab=99.70 E-value=1.1e-16 Score=115.93 Aligned_cols=150 Identities=34% Similarity=0.562 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.-|++++|-.|+|||||++.|.+.... ...||..++...+...+..++.+|++|+...++.+..++..+|++++.+|
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 358999999999999999999988733 45678888888889999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc------------CcccceeEEEee
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS------------SRQHRIKLIATQ 199 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 199 (224)
+.+.+++.+.+..+..++........|+++.+||.|.+.....++..-.+.+.... .+.. .++.||
T Consensus 97 a~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~--evfmcs 174 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPL--EVFMCS 174 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeE--EEEEEE
Confidence 99999999999999998887666789999999999999988777766555543221 1333 566777
Q ss_pred cCCCCcc
Q psy12173 200 APSNLHH 206 (224)
Q Consensus 200 a~~~~gv 206 (224)
...+.|-
T Consensus 175 i~~~~gy 181 (193)
T KOG0077|consen 175 IVRKMGY 181 (193)
T ss_pred EEccCcc
Confidence 7666654
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=2.9e-16 Score=135.57 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=100.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCC------C----------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNT------S----------LSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~------~----------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.....++|+++|++++|||||+++|+.... . .+.....|++.....+..++..+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345789999999999999999999995211 0 001112233333444555778999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSS 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 185 (224)
|.......+..+|++++|+|+.++.. ....+.+..... .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98877777889999999999997632 333444444332 3677 788999999975311 12 2222222111
Q ss_pred ccCcccceeEEEeecCCCCcc
Q psy12173 186 ISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+.. .+++++++||.+|.++
T Consensus 232 ~~~--~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 232 FPG--DDIPIISGSALLALEA 250 (478)
T ss_pred CCc--CcceEEEEEccccccc
Confidence 111 2348999999998654
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=2.3e-16 Score=134.49 Aligned_cols=152 Identities=16% Similarity=0.078 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCCCCCceeEEEEEeCCe
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL---------------------------------SHNLKPTEGFNITILQKGEY 99 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~~ 99 (224)
++|+++|+.++|||||+.+|+...-.. +.....|.+.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997432110 00111233444555666788
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHH
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEV 177 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~ 177 (224)
++.++||||++.|.......+..+|++++|+|+..+..- ...+.+...... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 999999999999977666678999999999999876321 122222222221 2346899999999975311 1222
Q ss_pred HhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 178 GVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+.+...........++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222100000011124899999999999964
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=7.9e-16 Score=132.26 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=101.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
..+++|+++|+.++|||||+.+|+...- ..+.....|++.....+..++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4678999999999999999999974211 000111223344455566678
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCH-------HHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKL-------PVAAMELKNLLGDQRLSTV-PILVIANKQDVPG 170 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~ 170 (224)
..+.++|+||+++|.......+..+|++|+|+|+.+. .+ ....+.+..... .++ ++|+++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 9999999999999998888889999999999999974 22 233333333222 356 5788999999862
Q ss_pred C-CC---H----HHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 A-LS---A----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
. .. . +++.+.++...+... .++|+++||++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccc
Confidence 1 11 2 223333321111111 24899999999999954
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.69 E-value=4e-16 Score=122.04 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=79.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC----------CCCCceeEEEEEe-----CCeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH---------NL----------KPTEGFNITILQK-----GEYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------~~----------~~t~~~~~~~~~~-----~~~~~~l~D~~G 108 (224)
++|+++|+.++|||||+++|+...+.... .+ ..++......+.+ ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37899999999999999999975533210 00 0111111222222 247899999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+.++......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 99998888888999999999999998765532 333343332 358999999999985
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=4.7e-16 Score=132.19 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=95.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC-------CCC---------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG-------NTS---------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~-------~~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|+++|++++|||||+++|++. ++. .+.....|.+.....+..++.++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46789999999999999999999862 100 00011123333333344466789999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEE-EEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL-VIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+.+... ....+.+..+. . .++|.+ +++||+|+.+... .+ ++.+.+....+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~- 163 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF- 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC-
Confidence 776677889999999999987532 22333343332 2 367755 6899999974311 11 22222211111
Q ss_pred CcccceeEEEeecCCCCcc
Q psy12173 188 SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv 206 (224)
...+++++++||++|.|.
T Consensus 164 -~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 164 -PGDDTPIIRGSALKALEG 181 (396)
T ss_pred -CcCceeEEecchhccccC
Confidence 111248999999999764
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.69 E-value=2.7e-16 Score=113.55 Aligned_cols=134 Identities=18% Similarity=0.305 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC----chhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG----QENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|+.|||||||+++|.+..... ..|.. +.+.+ ..+|||| +..+...+......||.+++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~----~KTq~-----i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY----KKTQA-----IEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc----Cccce-----eEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 89999999999999999999876322 22222 22222 4599999 444555445556799999999
Q ss_pred EECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.|++++.+ +... +.. ...+|+|=|+||+|+. ++.+.+..++.++..... ++|++|+.+|+|+
T Consensus 71 ~dat~~~~~~pP~---fa~------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~------~if~vS~~~~eGi- 134 (143)
T PF10662_consen 71 QDATEPRSVFPPG---FAS------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK------EIFEVSAVTGEGI- 134 (143)
T ss_pred ecCCCCCccCCch---hhc------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC------CeEEEECCCCcCH-
Confidence 99999744 2211 111 1368999999999998 444555555566543322 6799999999999
Q ss_pred cchHHHHH
Q psy12173 208 HVSVVEAE 215 (224)
Q Consensus 208 ~~~~~~i~ 215 (224)
+++.+.+.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 66665543
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=3.6e-16 Score=135.35 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=99.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCCCCCceeEEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS---------------------------------HNLKPTEGFNITILQ 95 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~---------------------------------~~~~~t~~~~~~~~~ 95 (224)
.+..++|+++|++++|||||+.+|+...-... .....|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999985431110 001123334444566
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--C
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--S 173 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 173 (224)
.++.++.++||||++.+.......+..+|++++|+|+..+-.-. ..+.+. +.... ...|+++++||+|+.+.. .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHh--CCCceEEEEEeeccccchhHH
Confidence 67789999999999998766655679999999999998752211 111111 12111 135789999999997431 1
Q ss_pred HHHHHhhcCcccccCc-ccceeEEEeecCCCCccccc
Q psy12173 174 AEEVGVALDLSSISSR-QHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+.+........ ...++++++||++|.|+++.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2233322211000000 11248999999999999643
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=5.8e-16 Score=133.11 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=101.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--S-----------------------------LSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|+.++|||||+.+|+...- . .+.....|++.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4678999999999999999999985210 0 00111223344455566778
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---H---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC-
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---L---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG- 170 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~- 170 (224)
..+.++||||+.+|.......+..+|++++|+|+..+.- + ....+.+..... .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence 999999999999998887778899999999999997621 1 223333333322 3655 789999999532
Q ss_pred ---CCCHHHHHhhc----CcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 ---ALSAEEVGVAL----DLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+...+++.+.+ ....+... +++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCccc
Confidence 12233333322 21111112 34999999999999954
No 238
>CHL00071 tufA elongation factor Tu
Probab=99.69 E-value=4.4e-16 Score=132.88 Aligned_cols=150 Identities=20% Similarity=0.138 Sum_probs=97.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|++++|||||+++|++..-.. +.....|.+.....+..++.++.++||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 467899999999999999999999642110 0011122222333444567889999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+..+-. ....+.+.. ... .++| +|+++||+|+.+... .+ ++.+.+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~-~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILL-AKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777889999999999987622 223333333 332 3678 778999999975321 11 222222211111
Q ss_pred CcccceeEEEeecCCCCcc
Q psy12173 188 SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv 206 (224)
.. ..+++++||.+|.|+
T Consensus 165 ~~--~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GD--DIPIVSGSALLALEA 181 (409)
T ss_pred CC--cceEEEcchhhcccc
Confidence 11 248999999999865
No 239
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.8e-15 Score=114.17 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=104.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCceeEEEEEeCCeEEEEEEcCC----------chhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL--SHNLKPTEGFNITILQKGEYTLNIFELGG----------QENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 117 (224)
.....|+++|-.++|||||+|+|++.+-.. +.....|--.++..+ ++ .+.++|+|| .+.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 356799999999999999999999977322 112222322333332 22 389999999 334444444
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcccccCcc
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~ 190 (224)
.|++ +..++++++|+..+ ....+..+.+++.. .++|+++++||+|....... ..+.+.+... ..
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~----~~ 169 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP----PP 169 (200)
T ss_pred HHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC----CC
Confidence 4443 46789999999987 55555666677666 58999999999999775333 3333333321 12
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+...++..|+.++.|+ +++...|.+.+..
T Consensus 170 ~~~~~~~~ss~~k~Gi-~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGI-DELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCH-HHHHHHHHHHhhc
Confidence 2112888899999998 7777777776643
No 240
>KOG4423|consensus
Probab=99.66 E-value=3.7e-18 Score=125.75 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=129.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC---eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE---YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++++++|+.|+|||+++++.....|.. .+..|++ +......+++ +.+.+||..||+++..+..-+++.++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~--~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSY--HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHH--HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 456899999999999999999999998887 6666766 3444456654 67889999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccccCcccceeEEEe
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALS---AEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+..+|||+++..+|+....|..++-... +....|+|+..||+|...... ...+.+..+ ......++++
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k------engf~gwtet 174 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK------ENGFEGWTET 174 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh------ccCccceeee
Confidence 9999999999999999999998886653 334578999999999876522 223333322 2222379999
Q ss_pred ecCCCCccccchHHHHHHHHHHhh
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
|+|.+.|++|..-..+.+++.+.-
T Consensus 175 s~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 175 SAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred ccccccChhHHHHHHHHHHHhhcc
Confidence 999999997777777777776653
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=3e-15 Score=127.22 Aligned_cols=149 Identities=19% Similarity=0.114 Sum_probs=95.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|+.++|||||+++|+..... .+.....|.+.....+..++.++.++||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46789999999999999999999863110 00011223333333344467889999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEE-EEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL-VIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+.++-. ....+.+.. ... .++|.+ +++||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~-~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHH-HHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777677899999999999987622 222333333 333 367865 6899999974311 11 222222211111
Q ss_pred CcccceeEEEeecCCCCc
Q psy12173 188 SRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~g 205 (224)
..+++++++||++|.+
T Consensus 165 --~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 165 --GDDTPIIRGSALKALE 180 (396)
T ss_pred --ccCCcEEEeecccccC
Confidence 1134899999999864
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=1.3e-15 Score=136.63 Aligned_cols=155 Identities=15% Similarity=0.068 Sum_probs=97.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------C------------------CCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS---------------H------------------NLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~---------------~------------------~~~~t~~~~~~~~~~ 96 (224)
...++|+++|++++|||||+++|+...-... + ....|.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3467899999999999999999996431110 0 011123344455666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 174 (224)
++.++.++||||++.+.......+..+|++++|+|+..+.. ....+.+..+... ...++++++||+|+.+. ...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHH
Confidence 77899999999999887666666889999999999987632 1112222222212 23678999999999742 112
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+++.+.+..........+++++++||++|.|+++
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2222222100000011123799999999999964
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=3.6e-15 Score=128.14 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=81.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC------CC----------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG------NT----------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~------~~----------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
..+++|+++|+.++|||||+++|.+. .. ..+.....|.+.....+..++.++.++||||+..+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46789999999999999999999722 10 011112334444455555577899999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG 170 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 170 (224)
.........+|++++|+|+.++.. .+..+.+. +... .++| +|+++||+|+.+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~~---~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LARQ---VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCeEEEEEEeeccCC
Confidence 766666778999999999987632 22233333 3333 3678 578999999975
No 244
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=1.8e-15 Score=116.89 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce---e--EEEEEe-CCeEEEEEEcCCchhH----HH-HHHhhcc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF---N--ITILQK-GEYTLNIFELGGQENV----RR-FWNTYFE 121 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~---~--~~~~~~-~~~~~~l~D~~G~~~~----~~-~~~~~~~ 121 (224)
++|+++|++|+|||||+|.+.+..+... ...+.+. . ...+.. ....+.+|||||.... .. .....+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--CccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 6899999999999999999998664331 1111110 1 111111 1247899999996432 11 1223367
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-C--------CHHHHHhhcCccc---ccC-
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-L--------SAEEVGVALDLSS---ISS- 188 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--------~~~~~~~~~~~~~---~~~- 188 (224)
.+|+++++.+ +++......+...+.. .+.|+++|+||+|+... . ..+++.+.+.... ...
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 8899988843 2355555555555554 36899999999998432 1 1122221111110 000
Q ss_pred cccceeEEEeecC--CCCccccchHHHHHHHHHH
Q psy12173 189 RQHRIKLIATQAP--SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 189 ~~~~~~~~~~Sa~--~~~gv~~~~~~~i~~~l~~ 220 (224)
.....+++.+|+. .++|+ ..+.+.+...|-.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~-~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDF-PKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcCh-HHHHHHHHHHhhH
Confidence 0111289999998 56777 7777777666653
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=2.1e-15 Score=129.42 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=102.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCC--CceeEE---------------EEEe-----------
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNT---SLSHNLKPT--EGFNIT---------------ILQK----------- 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t--~~~~~~---------------~~~~----------- 96 (224)
..+..++|+++|+...|||||+++|++... ..+-....| ++|... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 446789999999999999999999997432 111111112 222211 0000
Q ss_pred -----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 97 -----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 97 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
-...+.++|+||++.|..........+|++++|+|+.++....+..+.+.. .... .-.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHc--CCCcEEEEEecccccCH
Confidence 024789999999999988777778899999999999975222223333332 2221 23578999999999754
Q ss_pred CCH----HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 172 LSA----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 172 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... +++.+.+... ....++++++||++|.|+ +.+.+.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~----~~~~~~iipVSA~~G~nI-~~Ll~~L~~~ 231 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGT----IADNAPIIPISAQLKYNI-DVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHHHHHHHhh----ccCCCeEEEeeCCCCCCH-HHHHHHHHhh
Confidence 222 2222222110 012348999999999999 6666666653
No 246
>KOG1145|consensus
Probab=99.64 E-value=1.1e-14 Score=123.44 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=109.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..++.+-|.++|+...|||||+..|..........-..| +|.....+. ++..+++.|||||.-|..++.....-+|.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 345778899999999999999999998764432122223 333333333 67899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc--ccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS--ISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+.+.|+- +.+..+-+... ...+.|+|+++||+|.++. +++.....+-... ....+.+++++++||++|
T Consensus 228 vVLVVAadDGV-mpQT~EaIkhA----k~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 228 VVLVVAADDGV-MPQTLEAIKHA----KSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEEccCCc-cHhHHHHHHHH----HhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 99999999872 22222223322 2258999999999998765 4444444442222 223455679999999999
Q ss_pred Cccc
Q psy12173 204 LHHL 207 (224)
Q Consensus 204 ~gv~ 207 (224)
.|++
T Consensus 302 ~nl~ 305 (683)
T KOG1145|consen 302 ENLD 305 (683)
T ss_pred CChH
Confidence 9994
No 247
>KOG1423|consensus
Probab=99.63 E-value=9.5e-15 Score=115.99 Aligned_cols=124 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred ccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchhHH---------
Q psy12173 44 VSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQENVR--------- 113 (224)
Q Consensus 44 ~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~~~--------- 113 (224)
....+..+..+|+++|.||+|||||.|.+.+.+....+.-..|+. -....+..+..++.++||||...-.
T Consensus 64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHH
Confidence 334566789999999999999999999999998766444444444 3344455678999999999943211
Q ss_pred ---HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 114 ---RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 114 ---~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+........+|.+++|+|+++..... .-+.+..+... .++|-++|.||.|....
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y---s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY---SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH---hcCCceeeccchhcchh
Confidence 11233467899999999999742211 12223333333 57899999999997553
No 248
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.2e-14 Score=102.82 Aligned_cols=106 Identities=24% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFEDT 123 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~~ 123 (224)
+|+++|.+|+|||||+|+|++.+... ......|.......+..++..+.++||||... ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865322 22333444555566778889999999999532 111223335899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
|++++|+|.+++ .-....+.+..+ + .++|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997772 112233333344 2 48999999998
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=6e-15 Score=133.66 Aligned_cols=116 Identities=21% Similarity=0.122 Sum_probs=89.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCC--------C----------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTS--------L----------SHNLKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~--------~----------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
..++|+++|+.++|||||+++|+..... . +..+..|+......+.+++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4679999999999999999999853210 0 002334556666778888999999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
...+..+++.+|++++|+|++++...... ..+..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 88888889999999999999987665543 33333322 37899999999998764
No 250
>KOG0462|consensus
Probab=99.63 E-value=1.9e-15 Score=127.90 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=115.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCCCCCCceeEEEEEeCC---eEEEEEEcCCc
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTS---------------LSHNLKPTEGFNITILQKGE---YTLNIFELGGQ 109 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~~---~~~~l~D~~G~ 109 (224)
...+..++.++-+...|||||..+|+..--. .+.+...|+-.....+.+.+ ..++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3367889999999999999999999853311 11233334444555566655 89999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~ 186 (224)
.+|..-....+..||++|+|+|++.+-..+.....+..+- .+..+|.|+||+|++.... ..++.+.+++..
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~- 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP- 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence 9999877777899999999999999866666666666663 3688999999999987632 233444444332
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.+++.+|||+|.|+++ +.+++.+.
T Consensus 210 ------~~~i~vSAK~G~~v~~-lL~AII~r 233 (650)
T KOG0462|consen 210 ------AEVIYVSAKTGLNVEE-LLEAIIRR 233 (650)
T ss_pred ------cceEEEEeccCccHHH-HHHHHHhh
Confidence 2899999999999944 55555443
No 251
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=1.8e-14 Score=116.49 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--------C----------CCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS--------H----------NLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~----------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|++|+|||||++++........ + ....++......+.+++..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999975331110 0 0122334455667778899999999999988877
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
....+..+|++++|+|++++..... ...+..+.. .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCCC
Confidence 7788999999999999998755432 233333322 47899999999998765
No 252
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.62 E-value=5.4e-15 Score=115.87 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEeC----------CeEEEEEEc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQKG----------EYTLNIFEL 106 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~----------~~~~~l~D~ 106 (224)
++|+++|+.++|||||+.+|+...-... .....|+......+.+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999985431110 01111222222222232 678999999
Q ss_pred CCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 107 GGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 107 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
||++.+.......++.+|++++|+|+.++..... ...+..... .++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999988888999999999999998755443 333444333 368999999999986
No 253
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.62 E-value=1.2e-14 Score=127.04 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=90.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--CCC-------------C-------CCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--SLS-------------H-------NLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+..+|+++|++++|||||+++|+...- ... . ....++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974211 000 0 00112223345577788999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCc
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDL 183 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~ 183 (224)
|+..+.......++.+|++|+|+|++++-.. ....++.. ... .++|+++++||+|+..... .+++++.++.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~-~~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV-CRL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH-HHh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9999988777788999999999999986322 22333333 222 4799999999999876532 3556665554
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.61 E-value=2e-14 Score=115.14 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=111.3
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhc
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYF 120 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~ 120 (224)
.+....+++++|.|++|||||++.|++-+.......+.|+......+.+++.+++++|+||.....+ ......
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3456789999999999999999999998866555666788888889999999999999998543222 233457
Q ss_pred cCCCEEEEEEECCCCCC-HHHHHH----------------------------------------HHHHHHhcC-------
Q psy12173 121 EDTDLLVFVVDSADPSK-LPVAAM----------------------------------------ELKNLLGDQ------- 152 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~~~~~------- 152 (224)
+.||.+++|+|+..... .+-+.+ .+..++.+-
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999996422 111111 111111110
Q ss_pred -----------------CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 153 -----------------RLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 153 -----------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
+..-+|.++|.||.|+......+.+.+.. ..+++||..+.|+ +++.+.+.
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~------------~~v~isa~~~~nl-d~L~e~i~ 285 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP------------NSVPISAKKGINL-DELKERIW 285 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc------------ceEEEecccCCCH-HHHHHHHH
Confidence 01146889999999998754444443333 6889999999999 67776666
Q ss_pred HHH
Q psy12173 216 QAM 218 (224)
Q Consensus 216 ~~l 218 (224)
+.|
T Consensus 286 ~~L 288 (365)
T COG1163 286 DVL 288 (365)
T ss_pred Hhh
Confidence 654
No 255
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=3e-14 Score=117.22 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe------------------------CCeEEEEEEcCCc-
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK------------------------GEYTLNIFELGGQ- 109 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~D~~G~- 109 (224)
|+++|.+++|||||+++++...+...+..+.|.+++.....+ ...++.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765433334444444433221 2368999999997
Q ss_pred ---hhHHHH---HHhhccCCCEEEEEEECCC
Q psy12173 110 ---ENVRRF---WNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 110 ---~~~~~~---~~~~~~~~d~ii~v~d~~~ 134 (224)
.+++.+ ....++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344443 2335899999999999973
No 256
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=2.9e-14 Score=129.06 Aligned_cols=143 Identities=19% Similarity=0.111 Sum_probs=97.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CC-------------CCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-----SH-------------NLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~-------------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
++.++|+++|++++|||||+++|+...-.. .. ....|+......+.+++.++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 456799999999999999999997422110 00 112234455667788899999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISS 188 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 188 (224)
+.......++.+|++++|+|+.++..... ...+..+ .. .++|+++++||+|+.... ..+++.+.+.....
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~-- 160 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAV-- 160 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce--
Confidence 88777888999999999999998644432 2333333 22 368999999999998643 22334444332211
Q ss_pred cccceeEEEeecCCC
Q psy12173 189 RQHRIKLIATQAPSN 203 (224)
Q Consensus 189 ~~~~~~~~~~Sa~~~ 203 (224)
...+++|+..+
T Consensus 161 ----~~~ipis~~~~ 171 (689)
T TIGR00484 161 ----PIQLPIGAEDN 171 (689)
T ss_pred ----eEEeccccCCC
Confidence 13566666655
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.2e-14 Score=118.44 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
..+++++++|+..+|||||+-+|+..- ++. +.+..-|++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 467899999999999999999998532 111 1111223334444455567
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC-----HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK-----LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-- 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 171 (224)
..++++|+||+..|-..+.....++|+.|+|+|+.+.+. ...+.....-+.... .-..+|+++||+|+.+-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCH
Confidence 889999999999998877778899999999999998742 111222222222221 23568999999999862
Q ss_pred CCHHHHHhhcCcccccC---cccceeEEEeecCCCCccccc
Q psy12173 172 LSAEEVGVALDLSSISS---RQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+++...+.. ..+. ...+++|+++||..|.|+-+.
T Consensus 163 ~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCccccc
Confidence 223444333322 1111 221358999999999999543
No 258
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.57 E-value=6.3e-14 Score=110.02 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHH-----HHHhhccCCCEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQK-GEYTLNIFELGGQENVRR-----FWNTYFEDTDLL 126 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~i 126 (224)
||+++|+.+|||||+.+.+..+..+.. ....+|.......+.. ....+.+||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998875442 2345788877777765 568999999999876544 345668999999
Q ss_pred EEEEECCCCCCHHHH---HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 127 VFVVDSADPSKLPVA---AMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 127 i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|||+|+...+..+.+ ...+..+.+.. ++..+.+..+|+|+..+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-H
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCH
Confidence 999999965533333 33333343333 67899999999999764
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=113.08 Aligned_cols=164 Identities=14% Similarity=0.209 Sum_probs=109.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCCeEEEEEEcCCchh-------HHHHHHhhc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGEYTLNIFELGGQEN-------VRRFWNTYF 120 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~ 120 (224)
....++|+++|.+|+||||++|+|..+...+......+.+.... ....++..+.+||+||.++ +++....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45678999999999999999999997664443333333333222 2344668899999999654 666677788
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---------HHHHhhcC-----cccc
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---------EEVGVALD-----LSSI 186 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------~~~~~~~~-----~~~~ 186 (224)
...|.+++++++.++.- ..-...+.++.... .+.++++++|.+|....... ..+++.++ ...+
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998732 22344455555543 35899999999998665211 11111111 1111
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
-.... +++..|...+.|+ +.+...+..++
T Consensus 193 ~q~V~--pV~~~~~r~~wgl-~~l~~ali~~l 221 (296)
T COG3596 193 FQEVK--PVVAVSGRLPWGL-KELVRALITAL 221 (296)
T ss_pred HhhcC--CeEEeccccCccH-HHHHHHHHHhC
Confidence 12344 7888889999999 77776766654
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=1.3e-13 Score=124.82 Aligned_cols=117 Identities=21% Similarity=0.104 Sum_probs=87.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS--L----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|++++|||||+++|+...-. . +.....|+......+.+++.++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35679999999999999999999752100 0 01222345556667788999999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.......++.+|++++|+|+.++-... ....+..+ .. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 8887888899999999999998874322 22333333 22 47899999999999864
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=3.1e-13 Score=104.39 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEEeCCeEEEEEEcCCchhH-------HH----HHHhh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQKGEYTLNIFELGGQENV-------RR----FWNTY 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~----~~~~~ 119 (224)
++|+++|.+|+|||||+|.+++.+..... ....|.........+.+..+.++||||..+. .. .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999987643321 1233555566667778899999999994322 11 11223
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..++|++++|+++.+... .....+++...+... .-.+++++.|++|.....
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCC
Confidence 467899999999887211 112233333332211 125889999999986653
No 262
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.55 E-value=3.1e-14 Score=118.54 Aligned_cols=86 Identities=20% Similarity=0.427 Sum_probs=76.1
Q ss_pred CCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcCCC
Q psy12173 85 PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQRL 154 (224)
Q Consensus 85 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 154 (224)
||+|+....+.+++..+.+||++|+...+..|..++.+++++|||+|+++- .++.+....+..+.....+
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 455677778888899999999999999999999999999999999999973 4688888899999988777
Q ss_pred CCCcEEEEEeCCCCCC
Q psy12173 155 STVPILVIANKQDVPG 170 (224)
Q Consensus 155 ~~~piilv~nK~Dl~~ 170 (224)
.++|+++++||.|+..
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 8999999999999754
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.55 E-value=1.2e-13 Score=120.81 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=87.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CC-CC-----C---------------CCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TS-LS-----H---------------NLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~-~~-----~---------------~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+.++|+++|++++|||||+++|+... .. .. . ....++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999986321 11 00 0 00111223345567788999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCc
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDL 183 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~ 183 (224)
|+..+.......+..+|++|+|+|+++. +......+...... .++|+++++||+|+.... -.+++++.++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 9998887667778999999999999885 33222233333333 478999999999986531 13444555543
No 264
>KOG1191|consensus
Probab=99.55 E-value=1.4e-13 Score=115.62 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=110.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchh-----HHH----HHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQEN-----VRR----FWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~-----~~~----~~~~~ 119 (224)
+..++|+++|.||+|||||+|.|........+... .|-+.-...++++++++.+.||+|..+ ... ....-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 35689999999999999999999988754332223 344455667788999999999999654 010 12334
Q ss_pred ccCCCEEEEEEEC--CCCCCHHHHHHHHHHHHhc-----CCCCCCcEEEEEeCCCCCCCCCHHHH--HhhcCcccccCcc
Q psy12173 120 FEDTDLLVFVVDS--ADPSKLPVAAMELKNLLGD-----QRLSTVPILVIANKQDVPGALSAEEV--GVALDLSSISSRQ 190 (224)
Q Consensus 120 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~ 190 (224)
++.+|++++|+|+ +..++-..+.+.+...-.. ....+.|++++.||.|+..+.+.-.. .-.... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 7889999999999 4444444444444443222 12345899999999999876221111 001110 011122
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
. ...++|+++++|+ +.+.+.+...+..+
T Consensus 425 ~--i~~~vs~~tkeg~-~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 425 P--IVVEVSCTTKEGC-ERLSTALLNIVERL 452 (531)
T ss_pred c--eEEEeeechhhhH-HHHHHHHHHHHHHh
Confidence 2 5666999999999 77877877776644
No 265
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.55 E-value=4.4e-14 Score=116.67 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=76.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+||++|+...+..|..++.++++++||+|.++. +++.+....+..+.....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3455777778888899999999999999999999999999999999999974 568888888999998877
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy12173 154 LSTVPILVIANKQDVPG 170 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~ 170 (224)
..++|+++++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 78999999999999644
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=1.3e-13 Score=124.81 Aligned_cols=117 Identities=20% Similarity=0.089 Sum_probs=85.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--CC----C------------CCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--SL----S------------HNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~~----~------------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|.+++|||||+++|+...- .. . .....|.......+.+++..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4577999999999999999999974211 00 0 0122344445566778899999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.......+..+|++++|+|+..+-... ....+..+.. .++|.++++||+|+...
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8776777789999999999988763322 2333343333 37899999999999864
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=6.5e-13 Score=112.43 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE------------------------eCCeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ------------------------KGEYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~D~~G 108 (224)
++|+++|.|++|||||+++|++..+...+....|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998876543333444444443322 1226789999999
Q ss_pred ch----hHHH---HHHhhccCCCEEEEEEECC
Q psy12173 109 QE----NVRR---FWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 109 ~~----~~~~---~~~~~~~~~d~ii~v~d~~ 133 (224)
.. ..+. .....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 2222 2333489999999999997
No 268
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=1.4e-12 Score=102.87 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=89.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
......|+++|.+|+|||||++.+....-.. ......+. .......+..+.++||||.. .... ...+.+|++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--NISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--cccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 4456789999999999999999998753111 11111221 11223367889999999864 2332 34688999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|.+.+.... ...+...... .+.|. ++++||+|+.++. ..++..+.+..........+.+++.+||++.-.+
T Consensus 110 viDa~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 99998764332 2233333333 35674 5599999997432 1233332322111111112349999999988666
Q ss_pred cc
Q psy12173 207 LH 208 (224)
Q Consensus 207 ~~ 208 (224)
..
T Consensus 185 ~~ 186 (225)
T cd01882 185 PK 186 (225)
T ss_pred CH
Confidence 43
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=5.1e-13 Score=116.54 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=70.5
Q ss_pred eEEEEEEcCCchh-----HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-
Q psy12173 99 YTLNIFELGGQEN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL- 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 172 (224)
.++.++||||... ........+..+|+|+||+|....-+..+ ..+...+.... ...|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5788999999643 23344457899999999999987533332 33333333321 135999999999986432
Q ss_pred -CHHHHHhhcCcc--cccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 173 -SAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 173 -~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+++.+.+... ...... ..++++||+.|.|+ +.+..++.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f--~eIfPVSAlkG~ni-d~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITP--QQIFPVSSMWGYLA-NRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCC--ceEEEEeCCCCCCH-HHHHHHHHh
Confidence 234444443211 111112 27999999999999 666555544
No 270
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=8.3e-14 Score=116.46 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=111.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---------------CCCCCCCCceeEEEEEe-----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---------------SHNLKPTEGFNITILQK-----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~ 109 (224)
.+..+..++-+-..|||||..|++...-.. +.+...|+-.+...+.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 456788999999999999999999643111 11223333333334443 3489999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~ 186 (224)
..|.--....+..|.+.++|+|++.+=..+.+.+.+..+- .+..++-|.||.||+.. ...+++++.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9988666666889999999999999866666677776663 36889999999999875 334566666666543
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+.+|||+|.|+ ++..+++.+
T Consensus 162 -------dav~~SAKtG~gI-~~iLe~Iv~ 183 (603)
T COG0481 162 -------DAVLVSAKTGIGI-EDVLEAIVE 183 (603)
T ss_pred -------hheeEecccCCCH-HHHHHHHHh
Confidence 7899999999999 445555543
No 271
>KOG0082|consensus
Probab=99.49 E-value=1e-13 Score=113.71 Aligned_cols=89 Identities=20% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcC
Q psy12173 83 LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQ 152 (224)
Q Consensus 83 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~ 152 (224)
..+|+|.....+.+++.++.++|++||...+.-|.+++.+++++|||+++++- +++.+....+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 35577888999999999999999999999999999999999999999999862 45777888999999999
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy12173 153 RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 153 ~~~~~piilv~nK~Dl~~~ 171 (224)
++.+.++|+++||.|+.++
T Consensus 259 ~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccccCcEEEEeecHHHHHH
Confidence 9999999999999998653
No 272
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.1e-13 Score=110.38 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=106.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---------------------------------SHNLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~ 96 (224)
...++++.+|...-|||||+-||+...... +.+...|++.-+..|.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 356899999999999999999999744211 12333455555666666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 174 (224)
+.++|.+.|||||+.|-+.+......||+.|+++|+..+ +.+..+....+.... .=..+++++||+||.+- ...
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 889999999999999999888888899999999999765 444433333333331 12568999999999764 223
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+++...+.............++|+||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333333321111111222389999999999984
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.47 E-value=8.1e-13 Score=119.59 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=80.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCC------------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSL------------------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY 119 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 119 (224)
+|++++|||||+++|....-.. +.....|++.....+.+++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999996432110 0012334555667788899999999999999887777778
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+|++++|+|++....... ...+..+.. .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 899999999999998765443 233333332 37899999999998754
No 274
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=1.2e-12 Score=106.12 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCCCCceeEE--EEEeCC--eEEEEEEcCCchhH-------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHN--------LKPTEGFNIT--ILQKGE--YTLNIFELGGQENV------- 112 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~------- 112 (224)
.++|+++|++|+|||||+|++.+..+..... ..+|+..... .+..++ ..+.+|||||....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 5799999999999999999999988654321 2344443333 233344 57999999993211
Q ss_pred -----------HHH--------HHhhcc--CCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 113 -----------RRF--------WNTYFE--DTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 113 -----------~~~--------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
... +...+. .+|+++++++.+.. .+... .+.+..+. .++|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 110 101222 46888888887752 23333 33333332 2589999999999965
Q ss_pred C
Q psy12173 171 A 171 (224)
Q Consensus 171 ~ 171 (224)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
No 275
>KOG1490|consensus
Probab=99.44 E-value=5.3e-13 Score=112.31 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=111.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh----HHHH----H-Hhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN----VRRF----W-NTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~----~-~~~~ 120 (224)
++..+++++|-|++|||||++.++..........++|.+...+++.++-..+.++||||.-+ .+.. . ....
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987765544666777777888888778899999999321 1111 1 1112
Q ss_pred cCCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 EDTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+---+|+|+.|++. +.|.......+..+... +.++|+|+|+||+|.....+.++-.+.+--... ...+++++++
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~--~~~~v~v~~t 321 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTII--DDGNVKVVQT 321 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHH--hccCceEEEe
Confidence 22346899999987 55778888888887554 368999999999999765433222211100000 1112489999
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
|+.+.+||-+.-..+.+..|
T Consensus 322 S~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cccchhceeeHHHHHHHHHH
Confidence 99999999554444444433
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=1.1e-12 Score=119.25 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=80.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---------------CCC-CCCCCCCCceeEE----EEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---------------TSL-SHNLKPTEGFNIT----ILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---------------~~~-~~~~~~t~~~~~~----~~~~~~~~~~l~D~~G~ 109 (224)
...++|+++|+.++|||||+++|+... +.. +.....|+..... .+.+++..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 356899999999999999999997531 110 0012223332221 24557789999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.++.......++.+|++++|+|+.++-... ....+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998877778899999999999998753222 2233333322 3678899999999864
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=6e-12 Score=116.61 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCHHHHHHHHhcCCCCCCCC--CCCCCceeEEEEEe----------------CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 63 SGKSTLIKQISSGNTSLSHN--LKPTEGFNITILQK----------------GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 63 sGKSsl~~~l~~~~~~~~~~--~~~t~~~~~~~~~~----------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
++||||+.++.+........ .+..+|....+... +...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999877544222 22233333222221 0123899999999999888877888999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
++++|+|++++-.-. ....+. .... .++|+++++||+|+..
T Consensus 552 ivlLVVDa~~Gi~~q-T~e~I~-~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQ-TIEAIN-ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHh-HHHHHH-HHHH---cCCCEEEEEECCCCcc
Confidence 999999998752211 122222 2333 3689999999999964
No 278
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-12 Score=104.93 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=110.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC---C--------------------CCCCCCCCceeE-EEEEeC------Ce
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS---L--------------------SHNLKPTEGFNI-TILQKG------EY 99 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---~--------------------~~~~~~t~~~~~-~~~~~~------~~ 99 (224)
+..++|.++|+...|||||.++|.+-... + .+.+.+ ..+.. ..+... -+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 46789999999999999999999973311 1 001100 00000 011111 16
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHH
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAE 175 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~ 175 (224)
.+.++|.|||+-....+.....--|+.++|+.++.+....+..+.+..+--- .-+.+|++-||.|+... ...+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 7999999999999887766566679999999999988877777766655222 24679999999999875 3344
Q ss_pred HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++++.++-.. .-+++++++||..+.|+ +.+++++.+.+-
T Consensus 164 qIk~FvkGt~----Ae~aPIIPiSA~~~~NI-Dal~e~i~~~Ip 202 (415)
T COG5257 164 QIKEFVKGTV----AENAPIIPISAQHKANI-DALIEAIEKYIP 202 (415)
T ss_pred HHHHHhcccc----cCCCceeeehhhhccCH-HHHHHHHHHhCC
Confidence 4555544221 12349999999999999 888888777653
No 279
>KOG1144|consensus
Probab=99.37 E-value=5.7e-12 Score=110.27 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=83.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCCCCceeEEEEE----------------eCCeEEEEEEcCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHN--LKPTEGFNITILQ----------------KGEYTLNIFELGG 108 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--~~~t~~~~~~~~~----------------~~~~~~~l~D~~G 108 (224)
.+.-+.+-++++|+..+|||-|+..+.+.+...... ....+|.++.+.. ++---+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 445578899999999999999999999876544221 2223333333222 1123588999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
++.|..++.....-||.+|+|+|+.++ ++.. .+-+.-+ .. ++.|+||++||+|..
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lL-R~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLL-RM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhcc--CCcchhHHHHHH-Hh---cCCCeEEeehhhhhh
Confidence 999999999999999999999999986 2222 1222222 22 589999999999974
No 280
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=3.6e-13 Score=107.88 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred eEEEEEEcCCchhHHH---HH---HhhccC--CCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 99 YTLNIFELGGQENVRR---FW---NTYFED--TDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~---~~---~~~~~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
..+.+||+||+.+... .. ...+.. ++++++|+|+....+.... ..++........ .++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 4689999999876432 22 122333 8999999999876544332 222222211111 479999999999998
Q ss_pred CCCCHHHHHhhcCc--------c---------------cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 170 GALSAEEVGVALDL--------S---------------SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 170 ~~~~~~~~~~~~~~--------~---------------~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.....++..+.++. . .........+++++||+++.|+ +++.+.+.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl-~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGF-DELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCH-HHHHHHHHHHc
Confidence 76544444443331 0 0001122237999999999999 77777777654
No 281
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=7.3e-12 Score=115.57 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=82.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEe----------------
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQK---------------- 96 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~---------------- 96 (224)
..+.++|+++|+.++|||||+.+|+...-... .....|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34678999999999999999999986442100 0001111212222333
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
++..+.++||||+.+|.......++.+|++|+|+|+..+-... ....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2577899999999999988888899999999999999873322 2344444443 478999999999997
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.35 E-value=3.2e-11 Score=96.17 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=77.3
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHH------H----HH
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVR------R----FW 116 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~----~~ 116 (224)
......+|+++|.+|+|||||+|++++......+... .|..........++..+.++||||..+.. . ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3356789999999999999999999997754432332 34444455556678899999999965431 0 11
Q ss_pred Hhhc--cCCCEEEEEEECCCCC-CHH--HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 117 NTYF--EDTDLLVFVVDSADPS-KLP--VAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 117 ~~~~--~~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
..++ ...|++++|..++... ... .+.+.+...+.... -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCC
Confidence 2223 2678888887666532 121 23333333333211 257999999999854
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.34 E-value=5.8e-11 Score=96.46 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhc-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYF- 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~- 120 (224)
.+.++|+++|.+|+||||++|++++......+...+ +..........++..+.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999876432212221 12222333445789999999999664321 111111
Q ss_pred -cCCCEEEEEEECCCCCCHHH----HHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 121 -EDTDLLVFVVDSADPSKLPV----AAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 121 -~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
...|+++||.+++.. ++.. +.+.+...+... --.+.|++.|++|..
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 368999999665532 2322 233334433321 125789999999975
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=99.34 E-value=8.6e-12 Score=114.92 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=80.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEeC----------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQKG----------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~----------~~~~~l 103 (224)
...++|+++|+.++|||||+++|+...-... .....|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4567999999999999999999986321110 00011111112233333 577999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+||||+.++.......++.+|++|+|+|+.++-... ....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999887788899999999999999863322 3344444443 368999999999997
No 285
>PTZ00258 GTP-binding protein; Provisional
Probab=99.33 E-value=2.5e-11 Score=102.05 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=63.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN- 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~- 111 (224)
...++|+++|.|++|||||+|+|++......+....|...+...+.+.+ .++.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 3567999999999999999999988775554455566677777766542 3589999999432
Q ss_pred ------HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344578899999999984
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.33 E-value=8.5e-12 Score=104.36 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=104.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC----------CCCCCCCCce----eEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL----------SHNLKPTEGF----NITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~----------~~~~~~t~~~----~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
...+|+++-+...|||||+..|+.+. |.. +++....-|. .-..+.+++..++++|||||-.|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45799999999999999999999755 221 1111111122 2234667889999999999999988
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc---ccCccc
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS---ISSRQH 191 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 191 (224)
-....+.=.|++++++|+.++ .+.+.+-.+...+.. +.+.|+|+||+|.++....+-+.+.+++.. ....+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 777778889999999999987 444444444444443 677799999999988755544444443321 112333
Q ss_pred ceeEEEeecCCCC
Q psy12173 192 RIKLIATQAPSNL 204 (224)
Q Consensus 192 ~~~~~~~Sa~~~~ 204 (224)
+.+++..||+.|.
T Consensus 159 dFPivYAS~~~G~ 171 (603)
T COG1217 159 DFPIVYASARNGT 171 (603)
T ss_pred CCcEEEeeccCce
Confidence 4599999999886
No 287
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.2e-12 Score=103.77 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=98.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------C------CCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL--------------S------HNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
+..+.+++-+|.+|||||...|+--. ... + .....++..+..++.+++..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34589999999999999999988421 100 0 0112223345666777899999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSS 185 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~ 185 (224)
|+.+...+...+..+|..+.|+|+..+ .+.....+.++.+. +++|++-++||.|...... .+|+++.+++..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 999999888889999999999999998 66666666666665 6999999999999876533 467777777643
No 288
>KOG0410|consensus
Probab=99.32 E-value=6.1e-12 Score=100.89 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=107.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCch---------hHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQE---------NVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~ 119 (224)
.....|.++|-+++|||||+++|+.....+.+..+.|++++...... .+..+.+.||.|-- .|++....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee- 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE- 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence 45678999999999999999999977666666777888877777666 56788999999932 34444443
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc----EEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP----ILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
...+|.++.|.|+++|+. +.........++....++.| ++=|-||.|........| - . .-
T Consensus 255 VaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~---------n--~~ 318 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----K---------N--LD 318 (410)
T ss_pred HhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----c---------C--Cc
Confidence 678999999999999965 33444444444443323333 566778888755422211 1 1 25
Q ss_pred EEeecCCCCccccchHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+.+||++|+|+ +++..++...+.
T Consensus 319 v~isaltgdgl-~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGL-EELLKAEETKVA 341 (410)
T ss_pred cccccccCccH-HHHHHHHHHHhh
Confidence 68899999999 888878776654
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=4.9e-11 Score=99.17 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh----
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN---- 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~---- 111 (224)
++|+++|.|++|||||+|++++......+....|.+++...+.+.+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999999884444445566677766666543 2589999999432
Q ss_pred ---HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 ---VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 ---~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344578999999999985
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.30 E-value=7.3e-12 Score=86.97 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC----chhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG----QENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~ii~v 129 (224)
+++++|..|+|||||++.+.+..... ..|- .+++++ =-.+|||| +..+...+......+|++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQ-----Ave~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQ-----AVEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh----cccc-----eeeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 78999999999999999999876222 1111 133322 12679998 333333334457899999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
-.++++++.-.- .+..+ ..+|+|=+++|.|+.++.+.+..+..+.... . -++|++|+.++.|+ ++
T Consensus 72 ~~and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a--~~IF~~s~~d~~gv-~~ 136 (148)
T COG4917 72 HAANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----A--EPIFETSAVDNQGV-EE 136 (148)
T ss_pred ecccCccccCCc--ccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----C--cceEEEeccCcccH-HH
Confidence 999998653211 11111 3566999999999998755555555442211 1 18999999999999 44
Q ss_pred hHHH
Q psy12173 210 SVVE 213 (224)
Q Consensus 210 ~~~~ 213 (224)
+.+.
T Consensus 137 l~~~ 140 (148)
T COG4917 137 LVDY 140 (148)
T ss_pred HHHH
Confidence 4433
No 291
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.29 E-value=5.3e-12 Score=100.03 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred EEEEEEcCCchhHHHHHHhh------c--cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 100 TLNIFELGGQENVRRFWNTY------F--EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~------~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.+.++|||||.++-..+... + ...-++++++|.....+.... ...+..+.... ..+.|.|.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 79999999999876644332 2 345578999998876553332 23233322110 03799999999999987
Q ss_pred CC---------CH---------------HHHHhhcCcccccCcccce-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 171 AL---------SA---------------EEVGVALDLSSISSRQHRI-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 171 ~~---------~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+. +. +++.+.++ ..... .++++|+.+++|+ +.+...+.+++.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~------~~~~~~~f~pls~~~~~~~-~~L~~~id~a~~ 237 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLD------DFGLVIRFIPLSSKDGEGM-EELLAAIDKANQ 237 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCC------CCSSS---EE-BTTTTTTH-HHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh------hcCCCceEEEEECCChHHH-HHHHHHHHHHhc
Confidence 21 01 11111111 11122 7999999999999 888888888764
No 292
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.27 E-value=8.7e-11 Score=91.79 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEEeCCeEEEEEEcCCch-------hHHH----HHHhh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQKGEYTLNIFELGGQE-------NVRR----FWNTY 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~----~~~~~ 119 (224)
.+|+++|.+|+||||++|.+++....... ....|.........+++..+.++||||-. .... .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999988744321 12234456666678899999999999922 1111 12233
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA 174 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 174 (224)
..+.|++++|+....... -....+++..++.... -..++|+.|..|.......
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccH
Confidence 567899999999983311 1223334444444321 2468999998887766543
No 293
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.27 E-value=7.5e-12 Score=88.97 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=78.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
+|++++|+.|+|||+|+.++....|.. .+. +|.+ +........++++.++.|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cCceehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence 489999999999999999998777654 333 3333 33333456788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
..+.++++.. |...+... ...+.|.++++||.|+.+.. ++.+... ..++++|+++|.|+
T Consensus 56 ~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~----------~~~~~~s~~~~~~~ 114 (124)
T smart00010 56 VDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEG----------LEFAETSAKTPEEG 114 (124)
T ss_pred ccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHH----------HHHHHHhCCCcchh
Confidence 9999888654 54444433 22568899999999984321 1111111 15778999999988
No 294
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.27 E-value=7.3e-11 Score=97.46 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA--- 174 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--- 174 (224)
+..+.++||+|...-... ....+|.+++|.+...++.+...... .+. ..-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~E------~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IME------LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hhh------hhheEEeehhcccchhHHHHH
Confidence 478999999996633322 35579999999764444444332221 211 223899999999765322
Q ss_pred -HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 175 -EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
.++...+.........|..+++.+||++|.|+ +++.+.+.+++..+
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI-deL~~~I~~~~~~l 262 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI-DEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCH-HHHHHHHHHHHHHh
Confidence 33444443322111234458999999999999 88888888876643
No 295
>KOG0458|consensus
Probab=99.27 E-value=2.2e-11 Score=104.32 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=109.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-------------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++++++|+.++|||||+.+++..--.. +....-|++.....++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 478999999999999999999998522111 1111122233334444466
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---HH--HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--C
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---LP--VAAMELKNLLGDQRLSTVPILVIANKQDVPG--A 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~ 171 (224)
..++++|.||+..|-.........+|+.++|+|++..+- |+ ........+++.. .-..+++++||+|+.+ .
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccH
Confidence 889999999999888877777889999999999986421 11 1222333333332 2456899999999965 2
Q ss_pred CCHHHHHhhcCccc---ccCcccceeEEEeecCCCCccccc-hHHHHHHHHH
Q psy12173 172 LSAEEVGVALDLSS---ISSRQHRIKLIATQAPSNLHHLHV-SVVEAEQAMY 219 (224)
Q Consensus 172 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~gv~~~-~~~~i~~~l~ 219 (224)
...+++...+.-.. +......+.|++||+.+|+|+-.. -..++.+|+.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~ 384 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYK 384 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhc
Confidence 33445444443211 112333448999999999999644 4446777765
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.26 E-value=4.5e-11 Score=109.04 Aligned_cols=116 Identities=21% Similarity=0.175 Sum_probs=80.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------CCCCCCceeEEEEEe----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH----------------NLKPTEGFNITILQK----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~----~~~~~~l~D~~G~ 109 (224)
.+.++|+++|+.++|||||+.+|+...-.... ....|+......+.+ ++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45779999999999999999999853211100 001122222223333 4688999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.++.......++.+|++|+|+|+..+-.. .....+...... +.|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 99988778889999999999999876332 233344443332 567899999999863
No 297
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.7e-11 Score=99.08 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT---SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.|+..|+-..|||||++.+++..- ++......|++..++.....+..+.++|+||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578899999999999999998652 22234445666777777777789999999999999887777788999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
+.+++-.. +..+.+. ++... .-...++|+||+|..++...++..+.+..... ... .+++.+|+++|.|+ +++
T Consensus 82 ~~deGl~~-qtgEhL~-iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~--~~i~~~s~~~g~GI-~~L 153 (447)
T COG3276 82 AADEGLMA-QTGEHLL-ILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LAN--AKIFKTSAKTGRGI-EEL 153 (447)
T ss_pred eCccCcch-hhHHHHH-HHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-ccc--ccccccccccCCCH-HHH
Confidence 99765221 1222222 22221 23457999999999876443333222221111 122 38899999999999 777
Q ss_pred HHHHHHHH
Q psy12173 211 VVEAEQAM 218 (224)
Q Consensus 211 ~~~i~~~l 218 (224)
.+.+.+..
T Consensus 154 k~~l~~L~ 161 (447)
T COG3276 154 KNELIDLL 161 (447)
T ss_pred HHHHHHhh
Confidence 77776665
No 298
>KOG1532|consensus
Probab=99.23 E-value=3.3e-11 Score=94.75 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=71.1
Q ss_pred eEEEEEEcCCchhHH------HHHHhhc--cCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 99 YTLNIFELGGQENVR------RFWNTYF--EDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~------~~~~~~~--~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
.+..++|||||.+.- .+....+ ...-++++|+|... +.+|-.-+-+.-.++.. .+.|+|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 568999999976421 1222222 23456778888654 33444444444455554 5899999999999
Q ss_pred CCCCCCHHHH-------HhhcCc-c--ccc-----------CcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 168 VPGALSAEEV-------GVALDL-S--SIS-----------SRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 168 l~~~~~~~~~-------~~~~~~-~--~~~-----------~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+.+.....++ ++.++- . ... .-......+-+|+.+|.|. +.|..++.+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~-ddf~~av~~~vd 264 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF-DDFFTAVDESVD 264 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH-HHHHHHHHHHHH
Confidence 9886433332 222221 0 000 0111337899999999999 777777777655
No 299
>KOG0461|consensus
Probab=99.23 E-value=1.7e-10 Score=93.45 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=98.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC----C---CCCCCCCCCCceeEEEEEe---------CCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN----T---SLSHNLKPTEGFNITILQK---------GEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~----~---~~~~~~~~t~~~~~~~~~~---------~~~~~~l~D~~G~~~~~ 113 (224)
+.++++.++|+..||||+|.+++..-. | +.+.+...|++..+..+.. +..++.++|.||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 356899999999999999999998633 1 2222333444433333332 23678999999999888
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHH-HHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHH---hhcCcccccC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAME-LKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVG---VALDLSSISS 188 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~---~~~~~~~~~~ 188 (224)
+......+-.|..++|+|+..+-.-...+-. +.++ .-...|+|+||.|.. +......+. ..+.......
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 7766667778999999999986333222221 2222 224467778877764 433332222 2221111111
Q ss_pred -cccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 189 -RQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 189 -~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
-..+.|++++||+.|+-- ++.+.++.+++.
T Consensus 159 ~f~g~~PI~~vsa~~G~~~-~~~i~eL~e~l~ 189 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFK-EEMIQELKEALE 189 (522)
T ss_pred CcCCCCceeEEecCCCccc-hhHHHHHHHHHH
Confidence 122359999999999533 444444444443
No 300
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.9e-10 Score=89.57 Aligned_cols=161 Identities=18% Similarity=0.092 Sum_probs=100.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC---C-------------CCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG---N-------------TSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~---~-------------~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~ 111 (224)
..+++|..+|+.+.|||||..+++.. . -+++.....| .+..++.+ .++++..+|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT--Intahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce--eccceeEEecCCceEEeccCCChHH
Confidence 36789999999999999998888741 1 1111111222 34444444 678999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCCCCH-----HHHHhhcCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGALSA-----EEVGVALDLSS 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~-----~~~~~~~~~~~ 185 (224)
|-........+.|+.|+|+.+++. .+.+.++.+.-..+. +. .+++++||+|+.++.+. .|+.+.+....
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 988776667889999999999987 334344433333222 55 47888899999875322 22233332222
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ ...++|++.-||..-..-++.....+.+.+.
T Consensus 163 f--~gd~~Pii~gSal~ale~~~~~~~~i~eLm~ 194 (394)
T COG0050 163 F--PGDDTPIIRGSALKALEGDAKWEAKIEELMD 194 (394)
T ss_pred C--CCCCcceeechhhhhhcCCcchHHHHHHHHH
Confidence 2 2233488888887543322334444444443
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.18 E-value=1.9e-11 Score=96.12 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=98.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCCCC---------------------CceeEEEEEe--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-----SHNLKPT---------------------EGFNITILQK-------- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~~~~~t---------------------~~~~~~~~~~-------- 96 (224)
+...|.+.|+||+|||||+++|....-.. .-...|+ -+.....+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 46799999999999999999987422000 0000011 0122222221
Q ss_pred ------------CCeEEEEEEcCC--chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12173 97 ------------GEYTLNIFELGG--QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162 (224)
Q Consensus 97 ------------~~~~~~l~D~~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 162 (224)
-+.++.++.|.| |.+.. ...-+|.+++|....-++..+....-+.++.. ++|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~v 173 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFV 173 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEE
Confidence 146788888886 33333 24569999999999988888777766666622 899
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+||.|+... ....++...+.+.......|..+++.|||.+|.|+ +++.+.+.++...+
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi-~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI-DELWEAIDEHRDYL 232 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH-HHHHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH-HHHHHHHHHHHHHH
Confidence 999996554 33455666665554445667779999999999999 88888888876654
No 302
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.18 E-value=5.5e-11 Score=101.16 Aligned_cols=84 Identities=24% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCC
Q psy12173 86 TEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRL 154 (224)
Q Consensus 86 t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 154 (224)
|+|.....+.+ .+..+.++|++|+...+..|..++.++++||||+++++ ..++.+....+..+.....+
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 44677778888 88999999999999999999999999999999999874 23477888899999998888
Q ss_pred CCCcEEEEEeCCCCC
Q psy12173 155 STVPILVIANKQDVP 169 (224)
Q Consensus 155 ~~~piilv~nK~Dl~ 169 (224)
.+.|++|+.||.|+.
T Consensus 302 ~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTPIILFLNKIDLF 316 (389)
T ss_dssp TTSEEEEEEE-HHHH
T ss_pred ccCceEEeeecHHHH
Confidence 899999999999963
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.17 E-value=7.3e-10 Score=91.07 Aligned_cols=109 Identities=18% Similarity=0.081 Sum_probs=65.1
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHH
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV 177 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 177 (224)
+.++.++||+|...... .....+|.++++.+.. +-.++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV---DIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhhh---HHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 57899999998542221 2356788888885433 333333333333 35777999999999765332221
Q ss_pred Hhhc--Ccccc--cCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 178 GVAL--DLSSI--SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 178 ~~~~--~~~~~--~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+ .+... ....|..+++++||++|.|+ +++...+.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi-~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGI-DELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCH-HHHHHHHHHHHH
Confidence 2111 11111 11234347999999999999 667667666543
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.3e-10 Score=100.84 Aligned_cols=130 Identities=24% Similarity=0.169 Sum_probs=94.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-----C-------------CCCCCCceeEEEEEeCC-eEEEEEEcCCc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS-----H-------------NLKPTEGFNITILQKGE-YTLNIFELGGQ 109 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-----~-------------~~~~t~~~~~~~~~~~~-~~~~l~D~~G~ 109 (224)
..+.++|.++|+.++|||||..+++...-..+ . ....|+......+.|++ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 34678999999999999999999995331110 0 11112223344667785 99999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDL 183 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~ 183 (224)
.+|..-....++-+|++++|+|+..+-.. +.+..|.+...+ ++|.++++||+|.... ...+++.+.+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~~----~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADKY----GVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhhc----CCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999888889999999999999987332 234455555443 8999999999999765 344555555543
No 305
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.6e-09 Score=89.17 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC------------------CeEEEEEEcCCchh--
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG------------------EYTLNIFELGGQEN-- 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~D~~G~~~-- 111 (224)
.+++.++|-|++|||||+|.++.......+..+.|++++.....+. ...++++|.+|...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4689999999999999999999988555667778888777655542 15689999999443
Q ss_pred -----HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 -----VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 -----~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
....+...++.+|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 33344455899999999999885
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.13 E-value=3.7e-10 Score=90.13 Aligned_cols=160 Identities=23% Similarity=0.200 Sum_probs=105.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCCC---Cc------------------eeEEEEEe-------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-----NLKPT---EG------------------FNITILQK------- 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-----~~~~t---~~------------------~~~~~~~~------- 96 (224)
-+...|.+.|.||+|||||+..|......... ...|+ ++ ....++.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 35669999999999999999998753311100 00111 00 11111111
Q ss_pred -------------CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 97 -------------GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 97 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
.+..+.++.|.|.-.-... ..+-+|.+++|.-..-++..+....-+.++.. ++|+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vI 196 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVI 196 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeE
Confidence 1366778888763322221 23468999999888888778777766666632 8999
Q ss_pred eCCCCCCC-CCHHHHHhhcCccc--ccCcccceeEEEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 164 NKQDVPGA-LSAEEVGVALDLSS--ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 164 nK~Dl~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
||.|+... ....++...++... .....|..+++.|||.+|+|+ +++.+.+.++...+.
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi-~~L~~ai~~h~~~~~ 257 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGI-DELWDAIEDHRKFLT 257 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCH-HHHHHHHHHHHHHHH
Confidence 99997654 33455555555554 455777779999999999999 888889998887553
No 307
>KOG0447|consensus
Probab=99.13 E-value=2.9e-09 Score=91.02 Aligned_cols=161 Identities=9% Similarity=0.148 Sum_probs=114.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-----------------------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-SLSH----------------------------------------------- 81 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~----------------------------------------------- 81 (224)
+..++|+++|+..+||||.+..+..... +..+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 4578999999999999999998886442 2100
Q ss_pred ------CCCCCCceeEEEEEeCC---eEEEEEEcCCch-------------hHHHHHHhhccCCCEEEEEEECCCCCCHH
Q psy12173 82 ------NLKPTEGFNITILQKGE---YTLNIFELGGQE-------------NVRRFWNTYFEDTDLLVFVVDSADPSKLP 139 (224)
Q Consensus 82 ------~~~~t~~~~~~~~~~~~---~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 139 (224)
.-..|+......+++++ ..+.++|+||.. ..-++...+..+.++||+|+-- .|.+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcc
Confidence 00011122223344433 579999999932 3445667789999999999842 2444
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 140 VAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.-+...-.+....++.+...|+|.+|.|+.++ .+++.+.+.++...+..+.. .|+.+ .+|.|-..+.+++|++-
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL--GYfaV--VTGrGnssdSIdaIR~Y 538 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL--GYFAV--VTGKGNSSESIEAIREY 538 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc--ceeEE--EecCCCcchhHHHHHHH
Confidence 44555666777777788999999999999876 78999999998887777665 67766 47777778888887764
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.13 E-value=6.4e-10 Score=83.48 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=43.2
Q ss_pred eEEEEEEcCCchh----HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q psy12173 99 YTLNIFELGGQEN----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166 (224)
Q Consensus 99 ~~~~l~D~~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 166 (224)
..+.++||||... .......+++.+|++|+|.+++..-+-..... +...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 4589999999643 22456777899999999999999644443333 3333333 244589999984
No 309
>KOG3886|consensus
Probab=99.10 E-value=1.8e-10 Score=88.48 Aligned_cols=147 Identities=22% Similarity=0.268 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHH-----HHHhhccCCCE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRR-----FWNTYFEDTDL 125 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~ 125 (224)
.||+++|-+|+||||+=.-+..+.... ......|+++...+..+ ++..+.+||.+|++.+.. .....++..++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~v 84 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQV 84 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehee
Confidence 589999999999999765555443211 11345566766666655 458899999999996543 33556889999
Q ss_pred EEEEEECCCCCC---HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHh-hcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSK---LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGV-ALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|||+...+- +......+..++++. +...+++...|.|+.+.-..+++-+ ..+......+.+.|.++++|..
T Consensus 85 li~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 85 LIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 999999997643 444455666676654 5678999999999987633333222 2222222223444577887754
No 310
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.09 E-value=2.9e-10 Score=94.70 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=59.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHH-----Hhh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-----NLKPTEGFNITILQKGE-YTLNIFELGGQENVRRFW-----NTY 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-----~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~-----~~~ 119 (224)
..++|+|+|++|+|||||+|.|.+-...... ....|..... +.... .++.+||+||........ ...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4679999999999999999999874322211 1112222222 22222 359999999954322111 223
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
+...|.+|++.+ ++|....-++..-.+. .++|+.+|-+|+|.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 667898887654 3455555555555555 58999999999995
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=4.4e-09 Score=88.02 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=72.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCCCCC---CCCceeE---EEEEe--C---CeEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG----NTS------------LSHNLK---PTEGFNI---TILQK--G---EYTLN 102 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~----~~~------------~~~~~~---~t~~~~~---~~~~~--~---~~~~~ 102 (224)
...+.|+++|+.++|||||+|+|.+. ... +.+... .|+++.+ ..+.. . ..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 35689999999999999999999987 322 111222 3445444 33433 1 27899
Q ss_pred EEEcCCchh--------HHH---------------------HHHhhcc-CCCEEEEEE-ECCC----CCCHHHHHHHHHH
Q psy12173 103 IFELGGQEN--------VRR---------------------FWNTYFE-DTDLLVFVV-DSAD----PSKLPVAAMELKN 147 (224)
Q Consensus 103 l~D~~G~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~~----~~s~~~~~~~~~~ 147 (224)
++||+|-.. ... =+...++ +++..|+|. |.+- ++.....+..+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998221 111 0222344 899999888 7651 1223344433333
Q ss_pred HHhcCCCCCCcEEEEEeCCCC
Q psy12173 148 LLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 148 ~~~~~~~~~~piilv~nK~Dl 168 (224)
.++. .++|++++.||.|-
T Consensus 175 eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh---cCCCEEEEEECcCC
Confidence 3333 48999999999994
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.06 E-value=3.1e-09 Score=93.56 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=75.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCceeEEEEEeCCeEEEEEEcCCchhH------H-H---HHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHN-LKPTEGFNITILQKGEYTLNIFELGGQENV------R-R---FWNT 118 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~------~-~---~~~~ 118 (224)
....+|+++|.+|+||||++|.|++........ ...|+..........+..+.++||||.... . . ....
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 456799999999999999999999976333222 233444333334457789999999995431 1 1 1122
Q ss_pred hcc--CCCEEEEEEECCCCCCHHH---HHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 119 YFE--DTDLLVFVVDSADPSKLPV---AAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 119 ~~~--~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
++. .+|++|+|..++......+ ..+.+..++.... -..+||+.|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 333 5899999998764433212 2333444443211 246899999999875
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.05 E-value=1.9e-08 Score=79.58 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=70.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCC---------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN----LKPTE--------------------------------------- 87 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----~~~t~--------------------------------------- 87 (224)
..+.++++|+.|+||||+++.+.+..+.+.+. ..|+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999875322100 00000
Q ss_pred ----cee--EEEEEe---CCeEEEEEEcCCchh-------------HHHHHHhhcc-CCCEEEEEEECCCCCCHHHHHHH
Q psy12173 88 ----GFN--ITILQK---GEYTLNIFELGGQEN-------------VRRFWNTYFE-DTDLLVFVVDSADPSKLPVAAME 144 (224)
Q Consensus 88 ----~~~--~~~~~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~ 144 (224)
++. .-.+.. .-.++.++||||... ...+...+++ ..+.+++|+|+...-.-....+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 000 001111 126799999999641 2224455666 44689999988754222222222
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
...+.. .+.|+++|+||.|..+.
T Consensus 185 a~~ld~----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH----cCCcEEEEEECCCCCCc
Confidence 333322 47899999999999765
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.05 E-value=1.1e-09 Score=88.26 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=59.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-----------------EEEEEEcCCchh------
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-----------------TLNIFELGGQEN------ 111 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~D~~G~~~------ 111 (224)
|+++|.|++|||||+|++++......+....|.+.+...+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998865544556676777777666442 599999999432
Q ss_pred -HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 -VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 -~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2223334478899999999975
No 315
>KOG0099|consensus
Probab=99.02 E-value=3.3e-10 Score=88.61 Aligned_cols=83 Identities=29% Similarity=0.534 Sum_probs=71.0
Q ss_pred CceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCCC
Q psy12173 87 EGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
.|.....+.++.+++..+|++|+...+..|...+....++|||+..+. .+++.+....+..+.++.++..
T Consensus 190 sGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 190 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred cceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 356666777888999999999999999999999999999999998775 2346667778888888888889
Q ss_pred CcEEEEEeCCCCC
Q psy12173 157 VPILVIANKQDVP 169 (224)
Q Consensus 157 ~piilv~nK~Dl~ 169 (224)
+.+|+.+||.|+.
T Consensus 270 isvIlFLNKqDll 282 (379)
T KOG0099|consen 270 ISVILFLNKQDLL 282 (379)
T ss_pred hheeEEecHHHHH
Confidence 9999999999974
No 316
>KOG0460|consensus
Probab=99.01 E-value=8.1e-09 Score=83.70 Aligned_cols=148 Identities=17% Similarity=0.099 Sum_probs=96.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhc----CC------CCCCC----CCCCCCceeEEEEEe--CCeEEEEEEcCCchhH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISS----GN------TSLSH----NLKPTEGFNITILQK--GEYTLNIFELGGQENV 112 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~----~~------~~~~~----~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~ 112 (224)
...+.+|.-+|+...|||||.-+++. .. |..-+ +...-+..+..++.+ ..+++--.|+||+-+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 35689999999999999999877763 11 11100 111223355666665 4588999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-----HHhhcCccccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-----VGVALDLSSIS 187 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~ 187 (224)
-........+-|+.|+|+.++|+ .+.+.++.+.-..+- .-..+++.+||.|+.++.+.-| +.+.+. .+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs--e~g 204 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLS--EFG 204 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHH--HcC
Confidence 88777777888999999999997 444455544443332 2356899999999986522211 122221 122
Q ss_pred CcccceeEEEeecCC
Q psy12173 188 SRQHRIKLIATQAPS 202 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~ 202 (224)
..+.++|++.=||+.
T Consensus 205 f~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALC 219 (449)
T ss_pred CCCCCCCeeecchhh
Confidence 234455888877764
No 317
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.00 E-value=1.1e-09 Score=87.26 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=65.8
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCccccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSIS 187 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 187 (224)
+++..+...++.++|.+++|+|+.+++ ++..+.+|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 466666667899999999999999887 78888888875532 479999999999997542221 2222221
Q ss_pred CcccceeEEEeecCCCCccccch
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.. +.+++++||++|.|+++.+
T Consensus 95 ~~--g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 95 NI--GYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred HC--CCeEEEEecCCchhHHHHH
Confidence 12 2389999999999995544
No 318
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.99 E-value=5.4e-09 Score=80.80 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=56.5
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE--EEEEeCCCCCCC--CCH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI--LVIANKQDVPGA--LSA 174 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~Dl~~~--~~~ 174 (224)
....++++.|..-..... . .-+|.+|.|+|+.+.++... ... .+... ++++||+|+.+. ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccH
Confidence 355677777732111111 1 12578999999998755321 111 12333 899999999853 233
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+.+.+.... ...+++++||++|+|+ +++.+.+.+
T Consensus 158 ~~~~~~~~~~~-----~~~~i~~~Sa~~g~gi-~el~~~i~~ 193 (199)
T TIGR00101 158 GVMERDAKKMR-----GEKPFIFTNLKTKEGL-DTVIDWIEH 193 (199)
T ss_pred HHHHHHHHHhC-----CCCCEEEEECCCCCCH-HHHHHHHHh
Confidence 33333333211 1238999999999999 555555544
No 319
>KOG0085|consensus
Probab=98.98 E-value=6.4e-11 Score=91.06 Aligned_cols=88 Identities=18% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 153 (224)
.||+|...+++......++++|++|+...+..|.+++++.-.++|++..+ +.+++++....+..++...+
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 45677777888888899999999999999999999888887777766544 45678888889999999999
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy12173 154 LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~~ 171 (224)
+.+.++|+..||.|+.++
T Consensus 264 F~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEE 281 (359)
T ss_pred ccCCceEEEechhhhhhh
Confidence 999999999999998654
No 320
>KOG0468|consensus
Probab=98.96 E-value=3.4e-09 Score=92.30 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=84.6
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C---CCCCC-------ceeEE--EEEe-------CCeEEEEEE
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSH---N---LKPTE-------GFNIT--ILQK-------GEYTLNIFE 105 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---~---~~~t~-------~~~~~--~~~~-------~~~~~~l~D 105 (224)
.....++|+++|+-.+|||+|+..|.....+..+ . ..+++ +..++ ..+. +.+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 3456789999999999999999999987654310 0 00110 11111 1111 237799999
Q ss_pred cCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 106 LGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 106 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
||||..+..-....++.+|++++|+|+.++-.+. .++.+.+..++ +.|+++|.||.|+
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq~----~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQN----RLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHhc----cCcEEEEEehhHH
Confidence 9999999988877899999999999999985544 45556666554 7999999999996
No 321
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.95 E-value=8.3e-09 Score=83.79 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCCCCceeEEEEEe--CC--eEEEEEEcCCch---------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHN--------LKPTEGFNITILQK--GE--YTLNIFELGGQE--------- 110 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~--------- 110 (224)
.++|+|+|+.|+|||||+|.|.......... ..++.......... ++ ..+.++||||..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5799999999999999999999876444221 11222233332222 32 689999999921
Q ss_pred ---------hHHHHHHhh---------ccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 111 ---------NVRRFWNTY---------FEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 111 ---------~~~~~~~~~---------~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+....... =...|+++|+++.+.. .+... .+.+..+. ..+++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 111111111 1245899999998754 23333 23444442 35789999999998665
Q ss_pred CCH
Q psy12173 172 LSA 174 (224)
Q Consensus 172 ~~~ 174 (224)
...
T Consensus 158 ~el 160 (281)
T PF00735_consen 158 EEL 160 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 322
>KOG1707|consensus
Probab=98.93 E-value=3.1e-08 Score=85.33 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=102.2
Q ss_pred cccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhc
Q psy12173 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQK--GEYTLNIFELGGQENVRRFWNTYF 120 (224)
Q Consensus 45 ~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~ 120 (224)
.+....+.+++.++|+.++|||.+++.+.++.+.. ....+.. +....+.. ....+.+-|.+-. .........
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke- 493 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE- 493 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-
Confidence 34455678999999999999999999999988776 3323322 22222222 3355666676643 222222222
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
..||++.++||.+++.++......+...... ...|+++|++|+|+.+. ...+++...+++. +.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~---------~P 561 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP---------PP 561 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC---------CC
Confidence 6799999999999999999887766555443 58999999999999653 3456666666653 45
Q ss_pred EEeecCCCCccccchHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+|.++ .+-.+.|...+..
T Consensus 562 ~~~S~~~-~~s~~lf~kL~~~ 581 (625)
T KOG1707|consen 562 IHISSKT-LSSNELFIKLATM 581 (625)
T ss_pred eeeccCC-CCCchHHHHHHHh
Confidence 6667764 2223444444433
No 323
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.92 E-value=2.4e-09 Score=83.33 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 156 TVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..|.++++||+|+.+... ..+..+.++.. ... ++++++||++|.|+ +.+.+.+.+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---~~~--~~i~~~Sa~~g~gv-~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---NPE--AEIILMSLKTGEGL-DEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---CCC--CCEEEEECCCCCCH-HHHHHHHHH
Confidence 467899999999975422 23333333211 122 38999999999999 555555543
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.91 E-value=2.5e-08 Score=82.20 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--------------CCCCceeEEEEEe-----------------
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL--------------KPTEGFNITILQK----------------- 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--------------~~t~~~~~~~~~~----------------- 96 (224)
+.+.++.|.+.|+.+.|||||+-.|..+.....+.. ..+.+.+...+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 446688999999999999999999987765442111 1111222222211
Q ss_pred ------CCeEEEEEEcCCchhHHHHH--HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 97 ------GEYTLNIFELGGQENVRRFW--NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 97 ------~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.+.-+.++||.|++.|-+.. ...-++.|..++++.+++.-+ ...+...-+... ...|++++.+|+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEeccc
Confidence 13568899999999988744 445578899999999999743 233333333332 47999999999999
Q ss_pred CCCCCH----HHHHhhcCccc------------------ccCcccceeEEEeecCCCCcc
Q psy12173 169 PGALSA----EEVGVALDLSS------------------ISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 169 ~~~~~~----~~~~~~~~~~~------------------~~~~~~~~~~~~~Sa~~~~gv 206 (224)
..+... +++...++... .+....-+|++.+|+.+|+|.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl 327 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL 327 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH
Confidence 776332 33333332210 111222369999999999998
No 325
>KOG3905|consensus
Probab=98.83 E-value=7.6e-08 Score=77.76 Aligned_cols=82 Identities=17% Similarity=0.335 Sum_probs=57.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC----eEEEEEEcCCchhHHHHHHhhccCC---
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE----YTLNIFELGGQENVRRFWNTYFEDT--- 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~l~D~~G~~~~~~~~~~~~~~~--- 123 (224)
..-+|+++|+.++|||||+.+|.+.. .. ...+-+++-+-++..+. .++.+|-+.|..-...++...+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e-~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE-TV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc-cc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 45689999999999999999999876 22 23344445554444322 5688898888776666655444333
Q ss_pred -CEEEEEEECCCC
Q psy12173 124 -DLLVFVVDSADP 135 (224)
Q Consensus 124 -d~ii~v~d~~~~ 135 (224)
-.+|++.|++++
T Consensus 128 etlviltasms~P 140 (473)
T KOG3905|consen 128 ETLVILTASMSNP 140 (473)
T ss_pred ceEEEEEEecCCc
Confidence 458899999998
No 326
>KOG1491|consensus
Probab=98.82 E-value=9.9e-08 Score=77.50 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=67.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-----------------CeEEEEEEcCCchh-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-----------------EYTLNIFELGGQEN- 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~D~~G~~~- 111 (224)
.+++++.++|.|++|||||+|.++.......+..+.|++++...+... .-.++++|++|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999999988777677777888777766552 15689999999543
Q ss_pred ------HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
........++++|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23334445899999999999775
No 327
>KOG1954|consensus
Probab=98.78 E-value=1.1e-07 Score=78.08 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=86.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeC-------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKG------------------------------- 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~------------------------------- 97 (224)
....=|+++|+-..||||+++.|+...|+.. ....||+++....+..+
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4567799999999999999999999988752 13345554333222110
Q ss_pred -------C---eEEEEEEcCCchh-----------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC
Q psy12173 98 -------E---YTLNIFELGGQEN-----------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 98 -------~---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
+ ..++++||||.-+ +......+...+|.|+++||....+--++....+.++..+ .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence 0 3589999999432 3445677889999999999999887777777777777654 4
Q ss_pred CcEEEEEeCCCCCCC
Q psy12173 157 VPILVIANKQDVPGA 171 (224)
Q Consensus 157 ~piilv~nK~Dl~~~ 171 (224)
-.+-||.||+|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 567889999998654
No 328
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.77 E-value=5.1e-08 Score=84.17 Aligned_cols=80 Identities=25% Similarity=0.413 Sum_probs=56.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--ceeEEEEEeC---C-eEEEEEEcCCchhHHHHHHhhccCC-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE--GFNITILQKG---E-YTLNIFELGGQENVRRFWNTYFEDT- 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~--~~~~~~~~~~---~-~~~~l~D~~G~~~~~~~~~~~~~~~- 123 (224)
...+|+|+|+.++|||||+.+|.+.. ...++. +|.+..+..+ + ..+.+|-+.|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e-----~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE-----DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC-----CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 34699999999999999999997654 223343 4555444332 2 4689999988777777765544432
Q ss_pred ---CEEEEEEECCCC
Q psy12173 124 ---DLLVFVVDSADP 135 (224)
Q Consensus 124 ---d~ii~v~d~~~~ 135 (224)
-.+|+|+|.+.|
T Consensus 99 l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKP 113 (472)
T ss_pred ccceEEEEEecCCCh
Confidence 358999999996
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=2.4e-08 Score=74.12 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=59.4
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 191 (224)
++....+..+++|++++|+|++++..... ..+...... .++|+++|+||+|+.+.....+.....+ ...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~- 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEG- 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCC-
Confidence 34556677788999999999988643222 122222222 3689999999999964311112111111 111
Q ss_pred ceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 192 RIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+++++||++|.|+ +.+...+.+.+
T Consensus 71 -~~~~~iSa~~~~gi-~~L~~~l~~~~ 95 (156)
T cd01859 71 -IPVVYVSAKERLGT-KILRRTIKELA 95 (156)
T ss_pred -CcEEEEEccccccH-HHHHHHHHHHH
Confidence 27899999999999 66666666654
No 330
>KOG1486|consensus
Probab=98.76 E-value=1.4e-07 Score=73.76 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=73.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH-------HHhhccC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF-------WNTYFED 122 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~ 122 (224)
....+|+++|.|.+|||||+..++.-+....+.-+.|+......+.+++-.+.+.|+||..+..++ .....+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 467799999999999999999999876443334445666666778889999999999996554332 2334678
Q ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHH
Q psy12173 123 TDLLVFVVDSADPSKLPV-AAMELKNL 148 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~-~~~~~~~~ 148 (224)
+|.++.|+|++..+-... ++..+...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 999999999998765443 34445544
No 331
>KOG0705|consensus
Probab=98.74 E-value=1.3e-08 Score=86.92 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=111.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
-..+|+.++|..++|||+|+.+++.+.|.. ...|.-+-..+.+.. ....+.+.|.+|..... |..+.|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~--~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQ--DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceecc--ccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceE
Confidence 467899999999999999999999988776 444444433333333 45677888888744332 567899999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC----CCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP----GALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|||.+.+..+++.+......+..+.....+|+++++++.-.. ......+..+... ... .|.+++++|-.|
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~k--rcsy~et~atyG 174 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMK--RCSYYETCATYG 174 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcC--ccceeecchhhh
Confidence 999999999999998888888777665678888888865332 2122222211111 112 248999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.+++..|.....+.+.
T Consensus 175 lnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 175 LNVERVFQEVAQKIVQ 190 (749)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9998888877776655
No 332
>KOG0466|consensus
Probab=98.71 E-value=5.6e-09 Score=83.52 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=103.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCC--c------------------------------eeEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTE--G------------------------------FNITI 93 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~--~------------------------------~~~~~ 93 (224)
.+..++|.-+|+...||||+++++.+-+ |..+-+...|+ + +....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3567899999999999999999998744 11100000010 0 00000
Q ss_pred EEeC-----CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 94 LQKG-----EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 94 ~~~~-----~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.... -+++.++|.||++-....+.....--|+.++++..+......+..+.+..+--- .-+.++++-||.|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhh
Confidence 0001 157889999999998887766555668999999888876655555555443111 23678999999999
Q ss_pred CCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 169 PGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
..+....+..+...........-+++++++||-.++|+ +...+.+.+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNI-d~v~eyivkk 239 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNI-DVVCEYIVKK 239 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccCh-HHHHHHHHhc
Confidence 87644333322222111111222349999999999999 6666666554
No 333
>KOG2486|consensus
Probab=98.66 E-value=1.5e-07 Score=74.49 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=90.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCcee-EEEEEeCCeEEEEEEcCCc----------hhHHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFN-ITILQKGEYTLNIFELGGQ----------ENVRRFW 116 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~-~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 116 (224)
....+.++++|-.++|||||+|.++..+-.. .... +.+.. .-....-+..+.++|.||. .++..+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~--~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIA--DTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhh--hhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3567899999999999999999999877443 2222 33322 2223334678999999991 1222233
Q ss_pred Hhhc---cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC------HHHHHhhc-Cccc-
Q psy12173 117 NTYF---EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS------AEEVGVAL-DLSS- 185 (224)
Q Consensus 117 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~~~~~-~~~~- 185 (224)
..++ ++--.+.+.+|++-+ +........+++.+ .++|+.+|.||+|...... ...+...+ .+..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 2222 122345556677654 44444444455555 5899999999999865411 11111100 0000
Q ss_pred ccCcccceeEEEeecCCCCccccchH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
..... -+|+.+|+.++.|+++.+.
T Consensus 286 ~f~~~--~Pw~~~Ssvt~~Grd~Ll~ 309 (320)
T KOG2486|consen 286 VFLVD--LPWIYVSSVTSLGRDLLLL 309 (320)
T ss_pred ceecc--CCceeeecccccCceeeee
Confidence 01112 2788999999999965544
No 334
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.64 E-value=2.3e-07 Score=77.48 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhH--
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENV-- 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~-- 112 (224)
+++.++|.|++|||||++.++.... ...+....|..++...+.+.+ ..+.++|.||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999885 443445566777777666643 36899999995542
Q ss_pred -----HHHHHhhccCCCEEEEEEECCC
Q psy12173 113 -----RRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 113 -----~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
.......++.+|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2244456899999999999864
No 335
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.62 E-value=2.8e-07 Score=69.56 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=44.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
.-|+|+|++.++-... ...+... ..=++|+||.|+.+.. +.+........- ..+++|+.+|+++
T Consensus 120 ~~v~VidvteGe~~P~--------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~-----np~~~ii~~n~kt 185 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV-----NPEAPIIFTNLKT 185 (202)
T ss_pred eEEEEEECCCCCCCcc--------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 6788888887643210 0011101 1348999999998753 334444433221 1233999999999
Q ss_pred CCccccchHHHHH
Q psy12173 203 NLHHLHVSVVEAE 215 (224)
Q Consensus 203 ~~gv~~~~~~~i~ 215 (224)
|+|+ +++...+.
T Consensus 186 g~G~-~~~~~~i~ 197 (202)
T COG0378 186 GEGL-DEWLRFIE 197 (202)
T ss_pred CcCH-HHHHHHHH
Confidence 9999 55444433
No 336
>KOG3887|consensus
Probab=98.62 E-value=1.5e-07 Score=73.08 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHH---HHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRR---FWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ii 127 (224)
..+|+++|...|||||+.+-...+-.+..+... +|......++...-.++.+||.|||..+-. -....++++.+.|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 356999999999999999888877644422211 222233333333447899999999876432 2244588999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcc--cccCcccceeEEEee
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGA----LSAEEVGVALDLS--SISSRQHRIKLIATQ 199 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~S 199 (224)
+|+|+.+. ..+....+...... .--+++.+-+...|.|...+ ..+.++.+..+-. ........+.|.-+|
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999885 33322222222221 12256788899999998654 1222232222111 111122234788887
Q ss_pred cCCCCccccchHHHHHHHHHHhhc
Q psy12173 200 APSNLHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~~~~ 223 (224)
-. ...+-|+|...+.+.+-+|+.
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhchh
Confidence 65 444668888777777666653
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.60 E-value=8.4e-08 Score=77.61 Aligned_cols=55 Identities=20% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 156 TVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+-++++||+|+.... +.++..+.+.. .....+++++||++|+|+ +++.+.+.+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~-----lnp~a~I~~vSA~tGeGl-d~L~~~L~~ 286 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE-----VNPEIEIILISATSGEGM-DQWLNWLET 286 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh-----hCCCCcEEEEECCCCCCH-HHHHHHHHH
Confidence 35669999999997632 23333333321 122348999999999999 666655544
No 338
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=1.9e-07 Score=71.66 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhc---Cccccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVAL---DLSSIS 187 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~---~~~~~~ 187 (224)
++.++..+++.+|++++|+|+.++..- ....+ ... ..++|+++|+||+|+.... ...+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 677888889999999999999986421 11111 111 1468999999999996542 222222221 000000
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.... .++++||++|.|+ +++...+.+.+
T Consensus 97 ~~~~--~i~~vSA~~~~gi-~eL~~~l~~~l 124 (190)
T cd01855 97 LKPK--DVILISAKKGWGV-EELINAIKKLA 124 (190)
T ss_pred CCcc--cEEEEECCCCCCH-HHHHHHHHHHh
Confidence 0112 6899999999999 55556665544
No 339
>KOG0448|consensus
Probab=98.58 E-value=1.3e-06 Score=76.86 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=88.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-----------------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG----------------------------------------- 88 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~----------------------------------------- 88 (224)
+.+.||++.|..++||||++|+++.++..+++ ..+++.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g-~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSG-IGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccc-ccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 46789999999999999999999987743311 111110
Q ss_pred ---eeEEEEEeCC-------eEEEEEEcCCchh---HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCC
Q psy12173 89 ---FNITILQKGE-------YTLNIFELGGQEN---VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 89 ---~~~~~~~~~~-------~~~~l~D~~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 155 (224)
.....+.+.+ ..+.++|.||.+. ..+-...+...+|++|+|.++.+. +...+..+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---c
Confidence 1111222211 3688999999553 333446678899999999988775 44444444443333 3
Q ss_pred CCcEEEEEeCCCCCCC--CCHHHHHhhc-CcccccCcccceeEEEeecCC
Q psy12173 156 TVPILVIANKQDVPGA--LSAEEVGVAL-DLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++.++++.||+|.... ...+++.... ++.....+..+..++.+||+.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 5557888889998654 2234443331 222222222233688888653
No 340
>KOG0467|consensus
Probab=98.56 E-value=2.9e-07 Score=81.56 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=79.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------------CCCCceeEEE----EEeCCeEEEEEEcCCchhH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL------------KPTEGFNITI----LQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~------------~~t~~~~~~~----~~~~~~~~~l~D~~G~~~~ 112 (224)
.....++.++.+...|||||...|....-..+... ..+-+.+.+. ...++..++++|+|||.+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34678999999999999999999986542221111 1112222221 2236789999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.+......+-+|++++.+|+..+---+ ....+.+. +..+...++|.||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~q-t~~vlrq~----~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQ-TYAVLRQA----WIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchh-HHHHHHHH----HHccCceEEEEehhhh
Confidence 998888888999999999998862222 22222222 2246778999999993
No 341
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.9e-07 Score=76.22 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=89.4
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..+.++.+-++++|+||+|||||++.|....... ....+.-.+..+..+.+.+++..+| ....++.. ...-+|.
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~---ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDL 136 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ---TIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADL 136 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh---hhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhhe
Confidence 3455677889999999999999999998654211 1111112233344466889999999 44444433 3567999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++.+|.+-+-.++.. + +..++.. ++.| ++-|++..|+... ......++.+..--......++++|..|-.
T Consensus 137 VlLlIdgnfGfEMETm-E-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-E-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred eEEEeccccCceehHH-H-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 9999999987443332 2 3344444 3555 6678899999876 345555555432111111113477777754
No 342
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=3.4e-07 Score=76.56 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=57.3
Q ss_pred HhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 117 NTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
...+.++|.+++|+|+.+++ ....+..++.... . .++|+++|+||+|+.......++.+.+. ..+ .++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g--~~v 152 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-S---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWG--YQP 152 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcC--CeE
Confidence 34578999999999999876 3334566665442 2 4799999999999975422223333221 112 279
Q ss_pred EEeecCCCCccccchHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i 214 (224)
+++||++|.|+ +++...+
T Consensus 153 ~~iSA~tg~GI-~eL~~~L 170 (352)
T PRK12289 153 LFISVETGIGL-EALLEQL 170 (352)
T ss_pred EEEEcCCCCCH-HHHhhhh
Confidence 99999999999 4444333
No 343
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=3.4e-07 Score=66.81 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
+++++|.+|+|||||+|++.+......... +..+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998875432121 11122223333333 6899999995
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.51 E-value=2.9e-07 Score=68.46 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=37.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
...+|+++|.+|+|||||+|++.+...........++. ....+. .+..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~-~~~~~~-~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK-VWQYIT-LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeE-eEEEEE-cCCCEEEEECcCC
Confidence 35689999999999999999999876433222222211 111111 2345899999993
No 345
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.50 E-value=3.6e-07 Score=74.67 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=58.8
Q ss_pred HhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 117 NTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
+..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.++........... ... .++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g--~~v 141 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALG--YPV 141 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCC--CeE
Confidence 44588999999999999987 77777777665543 3789999999999976521111111111 112 289
Q ss_pred EEeecCCCCccccchHHH
Q psy12173 196 IATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~ 213 (224)
+++||+++.|+ +.+...
T Consensus 142 ~~vSA~~g~gi-~~L~~~ 158 (287)
T cd01854 142 LAVSAKTGEGL-DELREY 158 (287)
T ss_pred EEEECCCCccH-HHHHhh
Confidence 99999999999 444433
No 346
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.49 E-value=1.1e-06 Score=84.35 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCc-eeEEEEEe-CCeEEEEEEcCC----ch----hHHHHHHhh-
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEG-FNITILQK-GEYTLNIFELGG----QE----NVRRFWNTY- 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~-~~~~~~~~-~~~~~~l~D~~G----~~----~~~~~~~~~- 119 (224)
+=.+|+|++|+||||++.+- +..|+..... ..+.+ -....+.+ -..+-.++||+| ++ ..+..|..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 44799999999999999988 4444432111 11111 01112332 223567999999 21 122223222
Q ss_pred --------ccCCCEEEEEEECCCCCC---------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 --------FEDTDLLVFVVDSADPSK---------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 --------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
-+..|++|+++|+.+.-. ...+...+.++..... ...|+.+++||+|+...
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 256899999999887422 1233444455544322 47999999999999754
No 347
>KOG0463|consensus
Probab=98.48 E-value=1e-06 Score=72.77 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=90.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCCCCCceeEE-----------------EEEe-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL----------------SHNLKPTEGFNIT-----------------ILQK- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~----------------~~~~~~t~~~~~~-----------------~~~~- 96 (224)
-..+|+++|+..+|||||+--|+++.... ++...++++.++. .++|
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46899999999999999998887655322 1122222221111 1111
Q ss_pred -----CCeEEEEEEcCCchhHHHHH--HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 -----GEYTLNIFELGGQENVRRFW--NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 -----~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
....+.++|+.|++.|.... ...-+-.|..++++-++-. -.....+.+.-.+. ..+|+++|++|+|.+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 12568999999999998643 3334567888888877654 11112222222222 379999999999998
Q ss_pred CCCCHHHHH----hhcCccccc---------------------CcccceeEEEeecCCCCcc
Q psy12173 170 GALSAEEVG----VALDLSSIS---------------------SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 170 ~~~~~~~~~----~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~gv 206 (224)
..--.+|-. ..++....+ .+. |++|.+|..+|.|+
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~--CPIFQvSNVtG~NL 346 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV--CPIFQVSNVTGTNL 346 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc--cceEEeccccCCCh
Confidence 763333321 122211111 123 69999999999998
No 348
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.48 E-value=2.6e-06 Score=70.21 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=73.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCCCCCceeEEEEEe--CC--eEEEEEEcCCchh-------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH--------NLKPTEGFNITILQK--GE--YTLNIFELGGQEN------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--------~~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~------- 111 (224)
-.++|+++|+.|+|||||+|.|++....... ...+++......... ++ ..++++||||--+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999999987432211 123444444444333 33 6899999999211
Q ss_pred -------HHHHHHhhc--------------cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 112 -------VRRFWNTYF--------------EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 112 -------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
...+...++ ..+|+++|.+..+.- .+..+ ...+..+. ..+-+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence 011111111 246889999886653 23333 23344443 246688899999987
Q ss_pred CCCCHHHH
Q psy12173 170 GALSAEEV 177 (224)
Q Consensus 170 ~~~~~~~~ 177 (224)
......++
T Consensus 176 T~~El~~~ 183 (373)
T COG5019 176 TDDELAEF 183 (373)
T ss_pred CHHHHHHH
Confidence 65444333
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.47 E-value=6e-07 Score=66.73 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=55.6
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++.+|.+++|+|+.++..- ....+...+... ..++|+++|+||+|+.++....+..+.+.. .+....+++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~------~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK------EYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc------CCcEEEEEe
Confidence 47889999999999987321 122233333221 246899999999999654222222222221 111146889
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
||+.+.|+ +.+...+.+.+
T Consensus 76 Sa~~~~~~-~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGK-GSLIQLLRQFS 94 (157)
T ss_pred eccccccH-HHHHHHHHHHH
Confidence 99999999 66666666543
No 350
>PRK00098 GTPase RsgA; Reviewed
Probab=98.47 E-value=4.3e-07 Score=74.61 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred hccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEE
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
...++|.+++|+|+.++++.... ..|+..+ .. .++|+++|+||+|+.+.. ...+..+.++ .... +++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~--~v~ 145 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGY--DVL 145 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCC--eEE
Confidence 36899999999999988776655 4444443 33 478999999999996331 1112222221 1122 899
Q ss_pred EeecCCCCccccchHHH
Q psy12173 197 ATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~ 213 (224)
++||+++.|+ +++...
T Consensus 146 ~vSA~~g~gi-~~L~~~ 161 (298)
T PRK00098 146 ELSAKEGEGL-DELKPL 161 (298)
T ss_pred EEeCCCCccH-HHHHhh
Confidence 9999999999 444433
No 351
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.45 E-value=4.9e-07 Score=68.26 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=37.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+|+|||||+|++.+.......... .|.+. ..+.. +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~-~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHL-DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEe-CCCEEEEECcCC
Confidence 4579999999999999999999987743322222 12222 22222 246899999993
No 352
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.44 E-value=5.9e-07 Score=65.58 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=49.2
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
..++.+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.++....+..+.++. ... ++++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~--~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGI--VVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCC--eEEE
Confidence 3478999999999999875533 122333332211 47899999999999654222222232221 112 7899
Q ss_pred eecCCCCc
Q psy12173 198 TQAPSNLH 205 (224)
Q Consensus 198 ~Sa~~~~g 205 (224)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998863
No 353
>KOG2655|consensus
Probab=98.39 E-value=5.6e-06 Score=68.63 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=70.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEEEEEe--CC--eEEEEEEcCCchh--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNITILQK--GE--YTLNIFELGGQEN-------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~-------- 111 (224)
..+++.++|+.|.|||||+|.|+...+.... ....|..+....... ++ .+++++||||--+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 4589999999999999999999987543311 111133333333333 33 6788999999211
Q ss_pred ------HHHHHHhh-----------cc--CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 ------VRRFWNTY-----------FE--DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ------~~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+ +. ..|+++|.+..+.- .+..+. ..+..+. ..+.+|-|.-|+|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 11111111 12 56889999987653 233332 2233332 36788999999998765
Q ss_pred CC
Q psy12173 172 LS 173 (224)
Q Consensus 172 ~~ 173 (224)
..
T Consensus 174 ~E 175 (366)
T KOG2655|consen 174 DE 175 (366)
T ss_pred HH
Confidence 33
No 354
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=1.5e-06 Score=64.43 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH-HHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELK-NLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|.+++|+|+.++.+... .++. ..... .++|+++|+||+|+.......++...+.. . ....++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~-----~-~~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRH-----S-YPTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHh-----h-CCceEEEEeccC
Confidence 78999999998755432 2233 23222 47999999999999644211222111110 0 112789999999
Q ss_pred CCccccchHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQA 217 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~ 217 (224)
|.|+ +++.+.+.+.
T Consensus 70 ~~gi-~~L~~~i~~~ 83 (155)
T cd01849 70 GQGI-EKKESAFTKQ 83 (155)
T ss_pred CcCh-hhHHHHHHHH
Confidence 9999 6666666543
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.38 E-value=1.1e-06 Score=66.35 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+++|||||++++.+..+.... ..+.+......+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4579999999999999999999987753311 112222222223332 56899999994
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.37 E-value=1.7e-06 Score=65.24 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=57.9
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 190 (224)
+........+..+|.+++|+|++++...... .+.... .++|.++|+||+|+.+.....+..+.++. ..
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~ 75 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KG 75 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cC
Confidence 3344556668999999999999876442221 122211 35799999999999644211122122111 11
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. .++.+||+++.|+ +++...+.+.+
T Consensus 76 ~--~vi~iSa~~~~gi-~~L~~~l~~~l 100 (171)
T cd01856 76 E--KVLFVNAKSGKGV-KKLLKAAKKLL 100 (171)
T ss_pred C--eEEEEECCCcccH-HHHHHHHHHHH
Confidence 2 6899999999999 66666666553
No 357
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.34 E-value=1.1e-05 Score=63.65 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCC-CCceeEEEEEe---CCeEEEEEEcCCchhHHH------HHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKP-TEGFNITILQK---GEYTLNIFELGGQENVRR------FWNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~-t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~------~~~~ 118 (224)
+..-|.++|++++|||+|+|++.+. .|.......+ |.|.-...... .+..+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4567899999999999999999998 7765444333 44444444443 357899999999543211 1111
Q ss_pred hcc--CCCEEEEEEECCCCC
Q psy12173 119 YFE--DTDLLVFVVDSADPS 136 (224)
Q Consensus 119 ~~~--~~d~ii~v~d~~~~~ 136 (224)
.+. -++.+|+..+....+
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 222 378888888776543
No 358
>KOG1143|consensus
Probab=98.34 E-value=1.2e-06 Score=72.14 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=93.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------C-----CCCCCceeEE--EEEe-----------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----------------N-----LKPTEGFNIT--ILQK----------- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----------------~-----~~~t~~~~~~--~~~~----------- 96 (224)
-.++++++|...+|||||+--|+.+.....+ . ...+++|+.. .+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988876533211 0 1112232211 0111
Q ss_pred -CCeEEEEEEcCCchhHHHHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC
Q psy12173 97 -GEYTLNIFELGGQENVRRFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173 (224)
Q Consensus 97 -~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 173 (224)
...-+.++|++|+.+|.......+. ..|..++|+++..+-... .++.+.-+.. -++|++++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 1245889999999999875533332 458888999888764332 2233333322 3899999999999988744
Q ss_pred HHH----HHhhcCcccccC-------------------cccceeEEEeecCCCCcc
Q psy12173 174 AEE----VGVALDLSSISS-------------------RQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 174 ~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~Sa~~~~gv 206 (224)
.+. +...+......+ ...-+|++.+|..+|+|+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl 376 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGL 376 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccch
Confidence 333 222222111111 122358999999999998
No 359
>KOG1487|consensus
Probab=98.33 E-value=1.4e-06 Score=68.56 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=60.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhccCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYFEDT 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 123 (224)
...+|.++|.|.+||||++..+.+...+.......|.-.......+++-++.+.|+||..+... +.....+.|
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3458999999999999999999987744422333333334445556788999999999553221 223346789
Q ss_pred CEEEEEEECCCC
Q psy12173 124 DLLVFVVDSADP 135 (224)
Q Consensus 124 d~ii~v~d~~~~ 135 (224)
+.+++|+|+..|
T Consensus 138 nli~~vld~~kp 149 (358)
T KOG1487|consen 138 NLIFIVLDVLKP 149 (358)
T ss_pred cEEEEEeeccCc
Confidence 999999998874
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.31 E-value=1.3e-06 Score=67.08 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL-------SHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..+++++|.+|+|||||+|+|.+..... .....|.+......+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 4689999999999999999999854211 0011111111122222222 5899999993
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.31 E-value=3.4e-06 Score=70.54 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=58.8
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..++|.+++|++.....++..+..|+.... . .++|.++|+||+|+......+...+..+. ..... .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g--~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIG--YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCC--CeEEEEe
Confidence 467999999999988888888888876443 2 47899999999999765322222222211 11122 2899999
Q ss_pred cCCCCccccchHHHH
Q psy12173 200 APSNLHHLHVSVVEA 214 (224)
Q Consensus 200 a~~~~gv~~~~~~~i 214 (224)
|+++.|+ +++...+
T Consensus 190 A~tg~Gi-deL~~~L 203 (347)
T PRK12288 190 SHTGEGL-EELEAAL 203 (347)
T ss_pred CCCCcCH-HHHHHHH
Confidence 9999999 4444444
No 362
>KOG1547|consensus
Probab=98.29 E-value=5e-06 Score=64.75 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=70.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEE--EEEeCC--eEEEEEEcCCc----------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNIT--ILQKGE--YTLNIFELGGQ---------- 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~---------- 109 (224)
..++|.++|..|.|||||+|.+...+..... .+..|+..... .+..++ .++.++||||-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 5789999999999999999999875533210 11112221111 122233 57889999991
Q ss_pred --------hhHHHHH--------Hhhcc--CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 --------ENVRRFW--------NTYFE--DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 --------~~~~~~~--------~~~~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+.+...+ ...+. ..+++++.+..+.- ++..+. +.+..+.. -+.+|-|.-|+|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 1112211 11222 45778888877754 333332 23333322 356788889999755
Q ss_pred CCCHHHHHhhc
Q psy12173 171 ALSAEEVGVAL 181 (224)
Q Consensus 171 ~~~~~~~~~~~ 181 (224)
-....++++..
T Consensus 199 leEr~~FkqrI 209 (336)
T KOG1547|consen 199 LEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHHH
Confidence 43344444444
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.29 E-value=3e-06 Score=62.84 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~ 109 (224)
...+++++|.+++||||+++++.+.... .+.++.+.+.. .+...+..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA---STSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc---ccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4578999999999999999999976532 23344443322 11113347999999993
No 364
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.28 E-value=2.7e-06 Score=69.14 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc
Q psy12173 107 GGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS 185 (224)
Q Consensus 107 ~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 185 (224)
|||.. ........++.+|++++|+|+..+.+-.. ..+.... .++|+++|.||+|+.+.....++.+.++.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 55442 23345566899999999999987644322 1222332 25799999999999643212222222211
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... +++.+||+++.|+ +.+...+.+.+
T Consensus 76 ---~~~--~vi~iSa~~~~gi-~~L~~~i~~~~ 102 (276)
T TIGR03596 76 ---KGI--KALAINAKKGKGV-KKIIKAAKKLL 102 (276)
T ss_pred ---cCC--eEEEEECCCcccH-HHHHHHHHHHH
Confidence 112 7899999999999 66666666554
No 365
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.28 E-value=2.5e-06 Score=63.26 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
....+++++|.+|+|||||+|++.+...... .....|....... . +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--L-DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--e-cCCEEEEECCCC
Confidence 3568899999999999999999998763221 1222233333222 2 246899999993
No 366
>KOG0459|consensus
Probab=98.26 E-value=3.5e-07 Score=75.86 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=102.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
....+++++|...+||||+-.++....- .++..-..|++.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 4678999999999999998766653210 001122234455555666677
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---- 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---- 171 (224)
..+++.|.||+-.|-..+.....++|..++|+++...+- |+.--+.....+......-...|+++||+|-+..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 899999999999998877777889999999999865421 3322222222222222235679999999998653
Q ss_pred CCHHHHHhhcCcccc---cCcccceeEEEeecCCCCcccc
Q psy12173 172 LSAEEVGVALDLSSI---SSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...++..+.+..... .....+..|+++|..+|.++.+
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~ 276 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKD 276 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhh
Confidence 334454444432211 0122234899999999999854
No 367
>KOG0464|consensus
Probab=98.26 E-value=4.8e-07 Score=75.48 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=90.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--------CCC----------CCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--------SLS----------HNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--------~~~----------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|.++..-.+||||...|++...- ... .....|+..-...++|++..+.++||||+..
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 3567999999999999999999985321 110 0112233334456778999999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDL 183 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~ 183 (224)
|+--...+++--|+++.|||.+.+-..+.+.-|. +....++|-+...||+|.... ...+.+++.++.
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 8877777888899999999999763333322222 222357899999999998654 334556666654
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.25 E-value=3.3e-06 Score=68.63 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+|+|||||+|++.+.+......... |... ..+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeC-CCEEEEECCCc
Confidence 45789999999999999999999876443222221 2222 223232 36899999996
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=4.4e-06 Score=68.29 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=38.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++++++|.+|+|||||+|+|.+.+........ .|.+. ..+.. +..+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEe-CCcEEEEECCCcC
Confidence 4579999999999999999999987743322211 12121 12222 3468999999953
No 370
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.22 E-value=3.1e-06 Score=71.37 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=61.7
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCccccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSIS 187 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 187 (224)
.+++..+...+.+.++++++|+|+.+... .....+.... .+.|+++|+||+|+... ...+++.+.+.. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~-~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKK-RAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHH-HHH
Confidence 56788888888899999999999987642 1122222222 26799999999999654 333343332210 011
Q ss_pred Cccc-ceeEEEeecCCCCccccchHHHHHH
Q psy12173 188 SRQH-RIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 188 ~~~~-~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.... ...++.+||++|.|+ +++...+.+
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv-~eL~~~l~~ 150 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGI-DELLDKIKK 150 (360)
T ss_pred HcCCCcCcEEEecCCCCCCH-HHHHHHHHH
Confidence 1111 015899999999999 555545543
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.13 E-value=6.3e-06 Score=67.40 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=60.8
Q ss_pred cCCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 106 LGGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 106 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
-|||.. ........+..+|++++|+|+.++.+... ..+.... .++|+++|.||+|+.+....+++.+.++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 356543 22344556899999999999987644322 2233332 26899999999999643212222222211
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.. .+++.+||+++.|+ +.+...+.+.+
T Consensus 79 ----~~--~~vi~vSa~~~~gi-~~L~~~l~~~l 105 (287)
T PRK09563 79 ----QG--IKALAINAKKGQGV-KKILKAAKKLL 105 (287)
T ss_pred ----cC--CeEEEEECCCcccH-HHHHHHHHHHH
Confidence 11 27899999999999 56666665554
No 372
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=6.4e-06 Score=68.34 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~ 110 (224)
...++.++|.|++||||++|+|.+.+.... ...| |++.....+ -+..+.++||||..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~P--G~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRP--GTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCC--ceecceEEEEcCCCeEEecCCCcC
Confidence 347899999999999999999999885321 2222 322222222 22348999999943
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.10 E-value=2.4e-06 Score=63.40 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc------eeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG------FNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
-.++++|+.|+|||||+|.|....-..........+ .....+... ....++||||..++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCcc
Confidence 588999999999999999999875322111111111 112222232 24589999995543
No 374
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=6.3e-05 Score=55.32 Aligned_cols=111 Identities=20% Similarity=0.363 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcC-C-------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELG-G------------------- 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~-G------------------- 108 (224)
..++|.+.|+||+||||++.++.+.--.. . ...-|+....+..++ .-|.++|+. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g-~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK--G-YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc--C-ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 45799999999999999999888532111 0 111123333332222 445666655 2
Q ss_pred -----chh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 109 -----QEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 109 -----~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.++ ........++.+|++ ++|--.+ ++...+.+..........++|++.++.+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 111 112334455667754 4565554 5555555555555443358898888887765
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.08 E-value=2.7e-05 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-++++|..|+|||||++++....
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 46899999999999999998653
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.07 E-value=6e-06 Score=69.09 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC------ceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE------GFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~------~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.++++|.+|+|||||+|+|.+............. ......+...+ ...++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 4799999999999999999987643322221111 11111122221 13599999966543
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=6e-05 Score=62.42 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC--------CCCCCC-----------CCceeEEEE-----------------E
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL--------SHNLKP-----------TEGFNITIL-----------------Q 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~--------~~~~~~-----------t~~~~~~~~-----------------~ 95 (224)
...++++|++|+||||++..+....... .+.+.. ..+...... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999998887532111 000000 001111110 0
Q ss_pred eCCeEEEEEEcCCchh--------HHHHHHh----hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 96 KGEYTLNIFELGGQEN--------VRRFWNT----YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~--------~~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
..+..+.++||||... ....... .-..++..++|+|++.+ .....+ ...+... -.+--++.
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence 1346899999999542 2221111 12357889999999965 233332 2333221 13457899
Q ss_pred eCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 164 NKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 164 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
||.|...... .-.+....+. |+..++ +|+++++
T Consensus 267 TKlD~t~~~G~~l~~~~~~~~----------Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 267 TKLDGTAKGGVVFAIADELGI----------PIKFIG--VGEGIDD 300 (318)
T ss_pred ECCCCCCCccHHHHHHHHHCC----------CEEEEe--CCCChhh
Confidence 9999754421 2222233332 777877 7788743
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.05 E-value=3.3e-05 Score=64.28 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCchhHH----HHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+.++||+|..... ..+... .-..|.+++|+|+..+...... ...+... -..--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc----CCCCEEEEeeecCCCC
Confidence 4679999999965321 111111 2357899999999776432222 2222221 1234788999998654
Q ss_pred CCH-HHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 LSA-EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
... -.+....+. |+..++ +|+++++.
T Consensus 295 ~G~~ls~~~~~~~----------Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 295 GGAALSIAYVIGK----------PILFLG--VGQGYDDL 321 (336)
T ss_pred ccHHHHHHHHHCc----------CEEEEe--CCCChhhc
Confidence 221 112222222 777776 78888443
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.99 E-value=8.6e-05 Score=63.59 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCC-C-CCCCC-----------CCCceeEEEEE--e--------------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTS-L-SHNLK-----------PTEGFNITILQ--K-------------- 96 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~-~-~~~~~-----------~t~~~~~~~~~--~-------------- 96 (224)
...|+++|.+|+||||++..|.. .+.. . .+.+. ...+....... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988862 1210 0 01111 01111111111 0
Q ss_pred -CCeEEEEEEcCCchhHHHH----HHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 -GEYTLNIFELGGQENVRRF----WNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 -~~~~~~l~D~~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
.+.++.++||+|....... ... ....++-+++|+|+..+....+..+.+... -.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 2468999999995433221 111 123578899999988764443333333221 23567889999985
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 44
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.99 E-value=0.00023 Score=57.72 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCeEEEEEEcCCchhHHHHH-------Hhhc-----cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q psy12173 97 GEYTLNIFELGGQENVRRFW-------NTYF-----EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~-------~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 164 (224)
++..+.++||||........ .... ..+|.+++|+|++.. .+.. .....+.+.. .+--++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 34789999999965322211 1111 248999999999854 3333 2333333221 24588999
Q ss_pred CCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 165 KQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 165 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|.|...... .-.+....+. |+..++ +|+++++
T Consensus 226 KlDe~~~~G~~l~~~~~~~~----------Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL----------PIKFIG--VGEKIDD 258 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc----------CEEEEe--CCCChHh
Confidence 999866522 2222222222 777776 7777743
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.99 E-value=1.2e-05 Score=67.29 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------CCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKP-------TEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.++++|++|+|||||+|+|.+........... |+. ....+...+ ...++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~-~~~l~~l~~-g~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTR-HVELFELPN-GGLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCc-eeEEEECCC-CcEEEeCCCcc
Confidence 48999999999999999999765332212111 221 222233321 13799999954
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00011 Score=61.97 Aligned_cols=120 Identities=9% Similarity=0.110 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------CC----CCCCCC-----------CCceeEEEEE-----------eCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT------SL----SHNLKP-----------TEGFNITILQ-----------KGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~------~~----~~~~~~-----------t~~~~~~~~~-----------~~~~ 99 (224)
.-.++++|++|+||||++..|..... .. .+.+.. ..+....... +.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 45889999999999999999875321 00 001100 0011111111 1356
Q ss_pred EEEEEEcCCchhHH----HHHHh--hccCCCEEEEEEECCCC-CCHHHHHHHHHHHHhcCCCC-CCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVR----RFWNT--YFEDTDLLVFVVDSADP-SKLPVAAMELKNLLGDQRLS-TVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 171 (224)
.+.++||+|..... ..... ....+.-.++|++++.. +.+.+....+.......... ..+-=++.||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 89999999955322 22222 12334556889998875 22333333333332211100 0123567799998765
No 383
>KOG0465|consensus
Probab=97.94 E-value=1e-05 Score=70.47 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=82.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCCC-------------CCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-----SLSHNLK-------------PTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~~~~~~-------------~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|.+.-.-.+||||+-.+.+...- ....... .|+..-...+.|++..+.++|||||..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3677899999999999999999885331 1111111 111222334667889999999999988
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
|---....++-.|+.++|++...+-. .+....+.+...+ ++|.|..+||.|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcCCC
Confidence 76655566788899999999887622 2234445555444 79999999999987763
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.92 E-value=2.2e-05 Score=62.71 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC--------CCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLK--------PTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
...++++|.+|+|||||+|+|.+.......... .|.......+ .+ ..++||||...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 357899999999999999999986532211111 1222233333 22 37999999654
No 385
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0001 Score=69.93 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEe-CCeEEEEEEcCC----c----hhHHHHHHhh----
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQK-GEYTLNIFELGG----Q----ENVRRFWNTY---- 119 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~D~~G----~----~~~~~~~~~~---- 119 (224)
=.+|+|++|+||||++..--.+..... .......+.....+++ -...-.++||.| + +..+..|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 368999999999999865443332110 1111122222333443 335678999998 2 1223334332
Q ss_pred -----ccCCCEEEEEEECCCCCCHHH---------HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 -----FEDTDLLVFVVDSADPSKLPV---------AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 -----~~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+..|+||+.+|+.+.-+.+. +..-+.++...- .-..|+.+++||.|+...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 467899999999987433221 222344443321 147899999999999764
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.88 E-value=2e-05 Score=66.45 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.++.++|.+|+|||||+|++..... ..+.....|.+. ..+.. +..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEe-CCCCEEEECCCCCC
Confidence 5899999999999999999998542 111111112222 22222 23467999999654
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=0.00028 Score=54.37 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC----CC----CCCCCC-----------CCceeEEEEE-----------------eC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT----SL----SHNLKP-----------TEGFNITILQ-----------------KG 97 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~----~~----~~~~~~-----------t~~~~~~~~~-----------------~~ 97 (224)
.++++|++|+||||.+-+|..... .. .+.+.. ..+....... .+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 689999999999999877764221 00 000000 0112222111 12
Q ss_pred CeEEEEEEcCCchhHH--------HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVR--------RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+.++.++||+|..... ..... ...+-+++|.+++... +... .+....... + +-=++.||.|..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~--~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~-~~~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEA--LNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---G-IDGLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHH--HSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---S-TCEEEEESTTSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhh--cCCccceEEEecccCh--HHHH-HHHHHhhcc---c-CceEEEEeecCC
Confidence 3679999999943322 12222 2678899999999863 3333 233332221 2 225669999987
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.78 E-value=4.5e-05 Score=62.38 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC------CceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT------EGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t------~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
..++++|++|+|||||+|.|.+...........+ +......+...+ ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 6799999999999999999998664332111110 111112222221 2369999998765
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.0012 Score=56.02 Aligned_cols=150 Identities=9% Similarity=0.104 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC----CC----CCCCC-----------CCCceeEEEEEe--------------CC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT----SL----SHNLK-----------PTEGFNITILQK--------------GE 98 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~----~~----~~~~~-----------~t~~~~~~~~~~--------------~~ 98 (224)
...|+++|++|+||||++..|...-. .. .+.+. ...++....... .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36899999999999999999863211 00 00000 011111111110 13
Q ss_pred eEEEEEEcCCchhHH----HHHHhhc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVR----RFWNTYF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.++||+|..... ......+ ...+.+++|+|++-. -......+..+.. -..-=+++||.|.....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETASS 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCCc
Confidence 579999999953211 1111212 345778999988644 2333333434321 12236789999987652
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
. .-.+....++ |+..++ +|.+|.+.+..+-.+.|.+
T Consensus 394 G~iLni~~~~~l----------PIsyit--~GQ~VPeDI~~A~~~~L~~ 430 (436)
T PRK11889 394 GELLKIPAVSSA----------PIVLMT--DGQDVKKNIHIATAEHLAK 430 (436)
T ss_pred cHHHHHHHHHCc----------CEEEEe--CCCCCCcchhhCCHHHHHH
Confidence 2 2222223322 555554 6888877766555444443
No 390
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.00015 Score=56.57 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=40.3
Q ss_pred EEEEEEcC-CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC-CcEEEEEeCCCCC
Q psy12173 100 TLNIFELG-GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIANKQDVP 169 (224)
Q Consensus 100 ~~~l~D~~-G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~ 169 (224)
.+.++||- |.+.+.+ ...+++|.+|.|+|.+.. ++.. .+.+..+... -+ +++.+|+||.|..
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHH---hCCceEEEEEeeccch
Confidence 34555553 4444432 235789999999999875 3333 3445555554 35 8999999999975
No 391
>PRK00098 GTPase RsgA; Reviewed
Probab=97.73 E-value=7.6e-05 Score=61.38 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------CCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-------TEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
...++++|++|+|||||+|.|.+........... |+ .....+...+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT-~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTT-THVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccc-ccEEEEEcCC-CcEEEECCCcCc
Confidence 4578999999999999999999765333211111 11 1112222222 247899999653
No 392
>PRK13796 GTPase YqeH; Provisional
Probab=97.72 E-value=6.7e-05 Score=63.42 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC----C--CCCCCCCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT----S--LSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~----~--~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++.++|.+|+|||||+|+|..... . .+.....|.+ ...+..++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCC-CcEEEECCCcc
Confidence 35799999999999999999986431 1 1111112222 22222222 24799999964
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=97.70 E-value=0.00019 Score=60.68 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=55.5
Q ss_pred hhHHHHHHhhccCCC-EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCccccc
Q psy12173 110 ENVRRFWNTYFEDTD-LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSIS 187 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 187 (224)
+.+...... +...+ .+++|+|+.+... .....+..+. .+.|+++|+||+|+... ...+++.+..... ..
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~-~k 127 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE-AK 127 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHH-HH
Confidence 345555544 44455 9999999988531 1222333322 26799999999999653 2233333222110 00
Q ss_pred Cccc-ceeEEEeecCCCCccccchHHHHHH
Q psy12173 188 SRQH-RIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 188 ~~~~-~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.... ...++.+||++|.|+ +++...+.+
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI-~eL~~~I~~ 156 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGI-DELLEAIEK 156 (365)
T ss_pred hcCCCcCcEEEEECCCCCCH-HHHHHHHHH
Confidence 0111 015889999999999 555555544
No 394
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.70 E-value=0.00018 Score=43.39 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred ccCCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 120 FEDTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
-+-.++++|++|.+. +.+.++....+.++.... .++|+++|.||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 455789999999997 456788888888887763 4899999999998
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00069 Score=59.39 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=61.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------CCC----CCCCC-----------CCCceeEEEEE-----------eCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN------TSL----SHNLK-----------PTEGFNITILQ-----------KGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~------~~~----~~~~~-----------~t~~~~~~~~~-----------~~~~ 99 (224)
.-.|+++|++|+||||++..|.... ... .+.+. ...++...... ..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4688999999999999998887421 000 00111 01112111111 1347
Q ss_pred EEEEEEcCCchhHHHH----HHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVRRF----WNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
++.++||+|....... ... ... ....++|++.+.. ...+...+..+.. ..+.-+++||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 8999999995432211 110 111 2345777777653 4444444444322 2456799999998654
No 396
>PRK01889 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00033 Score=59.07 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=51.7
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..++|.+++|+++..+-....+..++..... .+++.++|+||+|+.++.. +........ .... +++.+|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~--~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGV--PVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCC--cEEEEE
Confidence 5788999999999643333334444444333 4778899999999976511 112222211 1222 899999
Q ss_pred cCCCCccccchHHHH
Q psy12173 200 APSNLHHLHVSVVEA 214 (224)
Q Consensus 200 a~~~~gv~~~~~~~i 214 (224)
|++|.|+ +.+...+
T Consensus 179 a~~g~gl-~~L~~~L 192 (356)
T PRK01889 179 ALDGEGL-DVLAAWL 192 (356)
T ss_pred CCCCccH-HHHHHHh
Confidence 9999998 5444444
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.65 E-value=0.00037 Score=51.29 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=34.6
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
+..+.++||+|..... ..++..+|-+++|....-. +...-.-...+ ..-=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~---D~y~~~k~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAG---DDIQAIKAGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCch---hHHHHhhhhHh------hhcCEEEEeCCC
Confidence 4678999998865332 2367889988888866622 11111111221 122388999988
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00078 Score=57.75 Aligned_cols=113 Identities=9% Similarity=0.073 Sum_probs=61.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----CC-----CCCCCC-----------CCceeEEEE-----------EeCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-----SL-----SHNLKP-----------TEGFNITIL-----------QKGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~-----~~~~~~-----------t~~~~~~~~-----------~~~~~ 99 (224)
.-.++++|++|+||||++..|..... .. .+.+.. -.+...... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998765310 00 000000 001111110 11346
Q ss_pred EEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.++||+|.... ......+ .....-.++|+|++.. ...+.+.+..+.. --.-=++.||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 7899999994432 2222222 1234567889998854 3334444433311 1233678899998765
No 399
>KOG3859|consensus
Probab=97.63 E-value=0.00021 Score=57.10 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=68.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcee--EEEEEeCC--eEEEEEEcCCc-------hhHHH--
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFN--ITILQKGE--YTLNIFELGGQ-------ENVRR-- 114 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~-------~~~~~-- 114 (224)
-..++|+.+|.+|.|||||++.|.+-+|... +...|++... .+.++..+ .+++++||.|- ++|+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 3578999999999999999999998886541 1222333322 22222233 67899999981 11111
Q ss_pred -----HHHh-------------hc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 115 -----FWNT-------------YF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 115 -----~~~~-------------~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.. .+ ...+++++.+..+.- ++..+...-..-+ ..++.+|-++-|.|-...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~L----dskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKL----DSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHH----hhhhhhHHHHHHhhhhhH
Confidence 1111 12 245778888877653 3433332211111 135667777888887654
No 400
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00086 Score=57.26 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=82.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C----C----CCCCC-----------CCCceeEEEEE----------eCCeEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-S----L----SHNLK-----------PTEGFNITILQ----------KGEYTL 101 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-~----~----~~~~~-----------~t~~~~~~~~~----------~~~~~~ 101 (224)
...++++|++|+||||++.+|..... . . .+.+. ...+....... ..+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 34688999999999999999875220 0 0 00000 01111111110 035688
Q ss_pred EEEEcCCchh----HHHHHHhhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 102 NIFELGGQEN----VRRFWNTYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 102 ~l~D~~G~~~----~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.++||+|... ....+..+++ ...-.++|+|++.. .....+.+..+ .. --+-=++.||.|.....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 9999999542 1111222221 23468899999886 33333333333 11 12346789999986552
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
. .-.+....++ |+..++ .|.+|.+.+..+-.+.+.++
T Consensus 376 G~il~i~~~~~l----------PI~ylt--~GQ~VPeDi~~A~~~~l~~~ 413 (432)
T PRK12724 376 GSFLELADTYSK----------SFTYLS--VGQEVPFDILNATKNLMAEC 413 (432)
T ss_pred cHHHHHHHHHCC----------CEEEEe--cCCCCCCCHHHhhHHHHHHH
Confidence 2 1222222222 555554 68888877777766666543
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=0.00088 Score=57.76 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCchhHH----HHHHhhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 169 (224)
+..+.++||+|..... ..+..++. ...-+.+|++.+-. ...+.+.+..+. ..+ --++.||.|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~------~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS------RLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC------CCCCCEEEEeccccc
Confidence 4689999999953221 12222222 33467788888754 333444444432 222 36889999986
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 371 ~~ 372 (424)
T PRK05703 371 SS 372 (424)
T ss_pred cc
Confidence 55
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.0001 Score=59.80 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+++|+.|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 77899999999999999999744
No 403
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.0012 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....++++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988874
No 404
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.47 E-value=0.0026 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+=+.++||.-+|||||++||-..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHH
Confidence 5677999999999999999999863
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.47 E-value=0.0011 Score=49.84 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+.++|++|.... -.....+ ....+.+++|+|..... ...+....+.... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456899999997422 1111111 23589999999986542 2333444443321 2 35677799998664
No 406
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.0021 Score=52.01 Aligned_cols=149 Identities=9% Similarity=0.093 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC----C----CC-----------CCCCCCceeEEEEE--------------eCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS----L----SH-----------NLKPTEGFNITILQ--------------KGE 98 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~----~----~~-----------~~~~t~~~~~~~~~--------------~~~ 98 (224)
.-+++++|++|+||||++..+...... . .+ .+....++...... ..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 369999999999999998877643110 0 00 00111122222110 024
Q ss_pred eEEEEEEcCCchhHH----HHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVR----RFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.++||+|..... ..+... ....+-+++|+|++.. -.+..+.+..+.. -.+-=++.||.|.....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCCc
Confidence 689999999955211 111111 2245678999998754 2334444444321 12346789999987652
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
. .-.+....+. |+..++ +|.++.+.+..+-.+.+.
T Consensus 228 G~~l~~~~~~~~----------Pi~~it--~Gq~vp~di~~a~~~~l~ 263 (270)
T PRK06731 228 GELLKIPAVSSA----------PIVLMT--DGQDVKKNIHIATAEHLA 263 (270)
T ss_pred cHHHHHHHHHCc----------CEEEEe--CCCCCCcchhhCCHHHHH
Confidence 2 1222222222 565654 688887666655444443
No 407
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.45 E-value=0.0023 Score=55.23 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=62.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CCC----CCCCCCC-----------CceeEEEEE---------------e
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN----TSL----SHNLKPT-----------EGFNITILQ---------------K 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~----~~~----~~~~~~t-----------~~~~~~~~~---------------~ 96 (224)
....|+++|.+|+||||.+..+...- +.. .+.+.+. .+....... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35688999999999999987776311 110 0111110 111111100 0
Q ss_pred CCeEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 169 (224)
.+..+.++||+|........ ......+|.+++|+|++... +..+....+.. .. ..-++.||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence 13478999999955432211 11234688999999987752 22233333221 12 236778999975
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 246 a~ 247 (437)
T PRK00771 246 AK 247 (437)
T ss_pred Cc
Confidence 44
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.42 E-value=0.0017 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-.++.|.-|||||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345688899999999999999864
No 409
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.38 E-value=0.0038 Score=51.84 Aligned_cols=136 Identities=22% Similarity=0.207 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-----------C--C--CCCCCCceeEEEE-------E---------------e
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL-----------S--H--NLKPTEGFNITIL-------Q---------------K 96 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~-----------~--~--~~~~t~~~~~~~~-------~---------------~ 96 (224)
-.++.|.=||||||++++++.+..-. . + ......+.....+ + .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 45788999999999999999765311 0 0 0111111111111 1 0
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhc--------cCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYF--------EDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
+.....++.+.|.-.-......+. -..|+++-|+|+.+...... ..+.+..=+.. .=+|++||.|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 124566777777544333322222 23488999999988533222 22222222222 2299999999
Q ss_pred CCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 168 VPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.++...+.++..+... ...++++.+|.
T Consensus 157 lv~~~~l~~l~~~l~~l-----np~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRKL-----NPRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHHh-----CCCCeEEEccc
Confidence 98875444444444322 22237777766
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.38 E-value=0.0017 Score=55.93 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|.-.. ....... .-..+.+++|+|.... .+..+....+.... + ..-++.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 367999999994321 1111111 2256788999998654 33334444443221 1 2356679999744
No 411
>KOG0469|consensus
Probab=97.36 E-value=0.00031 Score=60.39 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=82.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCC------CCCceeEEE--------------------EEeC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS------HNLK------PTEGFNITI--------------------LQKG 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~------~~~~------~t~~~~~~~--------------------~~~~ 97 (224)
.+..++-++.+...|||||...|..+.-... ..+. ..-+..++. -+.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 4567888899999999999999986542210 0000 000111111 1112
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC---CCCH
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG---ALSA 174 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~ 174 (224)
+.-++++|.||+..|.+-....++-.|+.++|+|.-++--. +.+..+.+.+.+ .+.-+++.||.|..- ..++
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence 46799999999999999888889999999999998776222 223334444443 444588999999632 3455
Q ss_pred HHHHhhcC
Q psy12173 175 EEVGVALD 182 (224)
Q Consensus 175 ~~~~~~~~ 182 (224)
+++-+.++
T Consensus 172 EeLyqtf~ 179 (842)
T KOG0469|consen 172 EELYQTFQ 179 (842)
T ss_pred HHHHHHHH
Confidence 66555443
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.34 E-value=0.0031 Score=53.32 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCCCCCc------------------eeEEEE-----------EeCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL--S-HNLKPTEG------------------FNITIL-----------QKGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~--~-~~~~~t~~------------------~~~~~~-----------~~~~~ 99 (224)
...|+++||+|+||||-+-.|.....-. . ..-..|++ .+.... ...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 6789999999999999887776544300 0 00001111 111111 11357
Q ss_pred EEEEEEcCCchhHH----HHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVR----RFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 171 (224)
++.++||.|...+. ..+..++. ...-+.+|++++.. ...+...+..+. ..|+ =++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~------~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS------LFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc------cCCcceeEEEcccccCc
Confidence 89999999954322 22233332 23445667777765 444555555542 2222 466899998765
No 413
>KOG1424|consensus
Probab=97.33 E-value=0.00026 Score=60.93 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
.++|.+||-||+||||.||.|.+.+....+ +...|..|.... . ...+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--l-s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--L-SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--c-CCCceecCCCCc
Confidence 589999999999999999999998844321 222222222222 2 335789999994
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.33 E-value=0.0025 Score=51.94 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=63.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh-------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------------------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------------------- 111 (224)
....++++|++|.|||++++++...+.+. ..+. ....++..+.+|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQ---SDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCC---CCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 45689999999999999999999877433 1111 0123556666664221
Q ss_pred -----HHHHHHhhccCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 112 -----VRRFWNTYFEDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 112 -----~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
........++..++=++++|--+ ..+.......+..+....+.-++|+|.+|++
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12222345677788899998543 1233444444444433333368999999975
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0052 Score=56.35 Aligned_cols=115 Identities=12% Similarity=0.103 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCCC-----------CCceeEEEE-----------EeCCeE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL----------SHNLKP-----------TEGFNITIL-----------QKGEYT 100 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~----------~~~~~~-----------t~~~~~~~~-----------~~~~~~ 100 (224)
-.|+++|++|+||||.+..|....... .+.+.. ..+...... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999999888533100 000000 001111100 113467
Q ss_pred EEEEEcCCch----hHHHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 101 LNIFELGGQE----NVRRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 101 ~~l~D~~G~~----~~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.++||+|.. ......... ....+-+++|+|.+.. .+.+.+.+..+.... .-.+-=+++||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~--~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA--GEDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc--cCCCCEEEEeccCCCCC
Confidence 9999999932 222222221 2345678899998854 333333333332110 00123577999998765
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0032 Score=54.92 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..++++|++|+||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4789999999999999998885
No 417
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.29 E-value=0.0032 Score=41.90 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=57.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH-HHhhccCCCEEEEEEECC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF-WNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 133 (224)
+++.|.+|+|||++...+...--. .+.....+. .+.++|+++....... .......+|.++++++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE 69 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc
Confidence 678899999999998888754311 111222222 7899999986544431 133466889999998877
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 164 (224)
.. +....................+..++.|
T Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 70 AL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 65 3444433332222222223455555544
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.012 Score=50.12 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--------CC----CCCC-----------CCCCceeEEEEE-----------eC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT--------SL----SHNL-----------KPTEGFNITILQ-----------KG 97 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~--------~~----~~~~-----------~~t~~~~~~~~~-----------~~ 97 (224)
...|+++|++|+||||.+..+..... .. .+.+ ....+....... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45889999999999999988864211 00 0000 001122221111 13
Q ss_pred CeEEEEEEcCCchhHH----HHHHhhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|..... ......+. ...-+++|+|++.. ...+.+.+..+.. -.+-=++.||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 5789999999943211 11111222 22358899999886 4444444444421 123467899999866
Q ss_pred C
Q psy12173 171 A 171 (224)
Q Consensus 171 ~ 171 (224)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 5
No 419
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.21 E-value=0.0012 Score=49.66 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=35.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...-+.++|..|||||||++++...-.. .++....+.+....+.+ |.+|.+.++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~--------~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA--------RGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh--------cCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 3457899999999999999999965311 12333444444444444 778876655
No 420
>KOG1534|consensus
Probab=97.17 E-value=0.0013 Score=50.59 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred eEEEEEEcCCchhHHH------HHHhhccCC---CEEEEEEECCCC-CC---HHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 99 YTLNIFELGGQENVRR------FWNTYFEDT---DLLVFVVDSADP-SK---LPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~------~~~~~~~~~---d~ii~v~d~~~~-~s---~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
-.+-++|.|||.+... ....++++. -++++++|..-. ++ +......+..... -.+|-|=|.+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 4688999999765322 112223332 246666665531 11 2222222333333 36888999999
Q ss_pred CCCCCCCCHHHHHhhcCcc
Q psy12173 166 QDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 166 ~Dl~~~~~~~~~~~~~~~~ 184 (224)
.|+..+...++++..++..
T Consensus 174 MDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPD 192 (273)
T ss_pred HHHhhhhhHHHHHHhcCCc
Confidence 9998887777777666643
No 421
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.12 E-value=0.00051 Score=42.42 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++.|+.|+||||++.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 422
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.11 E-value=0.01 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++.|.-|+|||||+++++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35688899999999999999864
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.11 E-value=0.00046 Score=48.59 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999975
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.06 E-value=0.0072 Score=43.15 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.04 E-value=0.0021 Score=55.43 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCchhH----HHHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|.... ...... ..-.++.+++|+|+... .+..+....+.... + ..=++.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 367999999994322 111111 12357889999998754 33444444443221 2 2356699999644
No 426
>PRK08118 topology modulation protein; Reviewed
Probab=97.01 E-value=0.00063 Score=51.08 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998653
No 427
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.00061 Score=51.36 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+|+++|++|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.0006 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|+++|++||||||+++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 429
>KOG2484|consensus
Probab=96.98 E-value=0.00071 Score=56.59 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=40.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
....+++.|+|-|++||||++|+|...+.... ...|++......+. -+..+.+.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhhee-ccCCceeccCCce
Confidence 35689999999999999999999998885331 11222221111121 3467899999994
No 430
>PF05729 NACHT: NACHT domain
Probab=96.96 E-value=0.005 Score=45.39 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-+++.|++|+|||+++.++...-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999988643
No 431
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.96 E-value=0.0062 Score=48.22 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc--hhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ--ENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~~~~~~~~~d~ii 127 (224)
.+..++++.|+.|+||||+++.+....... + ++++.++.. .....+....-....-+|
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~------------------G--LRlIev~k~~L~~l~~l~~~l~~~~~kFI 109 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQ------------------G--LRLIEVSKEDLGDLPELLDLLRDRPYKFI 109 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhc------------------C--ceEEEECHHHhccHHHHHHHHhcCCCCEE
Confidence 356799999999999999999999765332 1 444544431 222233222222334455
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEe
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIAN 164 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~n 164 (224)
+.+|--.-+..+.....+..++...- ....-+++.+|
T Consensus 110 lf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 110 LFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred EEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 55553333344444455666655422 12233566554
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00079 Score=51.07 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
++|+++|+||+||||+.++|....
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999873
No 433
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.88 E-value=0.007 Score=49.33 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=55.4
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH--HHhhcCcccccCcccceeEEE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE--VGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (224)
..+.|-.++|+.+.+|+--......+.-+... .++..++++||+|+.++..... ....+. ...+ +.+.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-----~~gy--~v~~ 146 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYE-----DIGY--PVLF 146 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHH-----hCCe--eEEE
Confidence 44577888888999887655554444444443 5787888999999988744442 222222 1222 8999
Q ss_pred eecCCCCccccchHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i 214 (224)
+|++++.|+ +++...+
T Consensus 147 ~s~~~~~~~-~~l~~~l 162 (301)
T COG1162 147 VSAKNGDGL-EELAELL 162 (301)
T ss_pred ecCcCcccH-HHHHHHh
Confidence 999999998 5544443
No 434
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.86 E-value=0.001 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999999865
No 435
>KOG2485|consensus
Probab=96.83 E-value=0.0023 Score=52.03 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=36.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcee--EE-EEEe-CCeEEEEEEcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFN--IT-ILQK-GEYTLNIFELGG 108 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~--~~-~~~~-~~~~~~l~D~~G 108 (224)
...+.+.|+|-||+|||||+|.+...+.... ......-|.+ .. .+.+ ....+-+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 3578999999999999999998875442220 0111111111 11 1222 445688999999
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.011 Score=48.65 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=79.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CCC------------------------CCCCCCCCceeEEEEEe------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN----TSL------------------------SHNLKPTEGFNITILQK------ 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~----~~~------------------------~~~~~~t~~~~~~~~~~------ 96 (224)
...-|+++|-+|+||||-+-.|.... +.. ........+-+...+-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 46789999999999999877776422 111 00000001111111111
Q ss_pred --CCeEEEEEEcCCchhHHHHH-------Hhhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12173 97 --GEYTLNIFELGGQENVRRFW-------NTYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162 (224)
Q Consensus 97 --~~~~~~l~D~~G~~~~~~~~-------~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 162 (224)
++..+.++||.|.-.....+ ..... ..+-+++++|++-+..--+..+.+.+.... -=++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceEE
Confidence 35889999999943222111 11122 334589999999885555555555555432 1467
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||.|-... =..-.+...+++ |+..+- -|+++++.-.....+.+.
T Consensus 291 lTKlDgtAKGG~il~I~~~l~~----------PI~fiG--vGE~~~DL~~Fd~~~fv~ 336 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYELGI----------PIKFIG--VGEGYDDLRPFDAEWFVD 336 (340)
T ss_pred EEecccCCCcceeeeHHHHhCC----------CEEEEe--CCCChhhccccCHHHHHH
Confidence 899995432 112234444443 555553 456665444434444333
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.77 E-value=0.0014 Score=41.57 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999875
No 438
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.75 E-value=0.00089 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
||+++|.+++|||||++.|....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHcC
Confidence 69999999999999999999763
No 439
>KOG0780|consensus
Probab=96.75 E-value=0.0042 Score=52.04 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=59.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCCC-----------CCcee-EE----------------EE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--------HNLKP-----------TEGFN-IT----------------IL 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~~~~~-----------t~~~~-~~----------------~~ 94 (224)
..--|.++|-.|+||||.+-.+........ ++... ..+.. +. .+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 455789999999999999887765331110 00000 00111 11 11
Q ss_pred EeCCeEEEEEEcCCchhHHH-HHHh-----hccCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q psy12173 95 QKGEYTLNIFELGGQENVRR-FWNT-----YFEDTDLLVFVVDSADPSKLPVAAMELKNLL 149 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 149 (224)
..++..+.|+||.|...... +... -.-..|-+|+|.|++-+.........+.+..
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 12357899999999554332 1111 1235799999999999887777766666643
No 440
>KOG0446|consensus
Probab=96.73 E-value=0.0011 Score=59.93 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------CCC------C----CC-----------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH---------------NLK------P----TE----------------- 87 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------------~~~------~----t~----------------- 87 (224)
...+.|+++|..++||||.+..+.+..|.+.. ... . ..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 45689999999999999999999996654310 000 0 00
Q ss_pred ---------c-----eeEEEEEeCCeEEEEEEcCCc-------------hhHHHHHHhhccCCCEEEEEEECCCCCCHHH
Q psy12173 88 ---------G-----FNITILQKGEYTLNIFELGGQ-------------ENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140 (224)
Q Consensus 88 ---------~-----~~~~~~~~~~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 140 (224)
+ .+.....-.-.+++++|+||. ...+.+...++...+.+|+.+...+- +-
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~---d~ 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS---DI 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh---hh
Confidence 0 000001112256889999993 24566778888999999999988773 22
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 141 AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+.+..+..+...+-|.+|.|+.++
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 2223334445555567788888888887654
No 441
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.72 E-value=0.005 Score=44.65 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=60.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 56 LILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 56 ~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
+.-|.+|+|||++.-.+...-.... ....-..+.....+ +..+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCCh
Confidence 3457889999998665553210000 00000000000000 1678999999754322 2346788999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
. ++......+..+.... ...++.++.|+++..
T Consensus 79 ~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 T-SITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred h-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 4 4554444454443322 356788999999743
No 442
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.72 E-value=0.0018 Score=48.13 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|.+|+|||||+.++...- ...+.....+......+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l--------~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL--------SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 68899999999999999999642 1223334455554444443 788876665
No 443
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.70 E-value=0.016 Score=39.45 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=48.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 55 ILILG-LDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 55 i~v~G-~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
|++.| .+|+||||+...+...--.. +.....++. ....+.++|+|+....... ..+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~--------~~~vl~~d~d~~~d~viiD~p~~~~~~~~--~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR--------GKRVLLIDLDPQYDYIIIDTPPSLGLLTR--NALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC--------CCcEEEEeCCCCCCEEEEeCcCCCCHHHH--HHHHHCCEEEEeccC
Confidence 45666 66899999877666432111 111111111 1167899999986644332 456779999999977
Q ss_pred CCCCCHHHHHHHHH
Q psy12173 133 ADPSKLPVAAMELK 146 (224)
Q Consensus 133 ~~~~s~~~~~~~~~ 146 (224)
+.. ++....+.+.
T Consensus 72 ~~~-s~~~~~~~~~ 84 (104)
T cd02042 72 SPL-DLDGLEKLLE 84 (104)
T ss_pred CHH-HHHHHHHHHH
Confidence 653 4555544444
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.69 E-value=0.0016 Score=48.96 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|++.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998854
No 445
>PRK14530 adenylate kinase; Provisional
Probab=96.67 E-value=0.0017 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+|+++|+|||||||+.+.|....
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999997543
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.66 E-value=0.0018 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...-|+++|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 447
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.65 E-value=0.0016 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--++++|++|||||||++.+.+--
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999999733
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.65 E-value=0.002 Score=45.69 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL 79 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~ 79 (224)
..++++|++|+|||+++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999999766443
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.65 E-value=0.0025 Score=46.17 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+++|++|||||||++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999753
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.64 E-value=0.0031 Score=47.58 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=32.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--HhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhh
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNL--LGDQRLSTVPILVIANKQDVPGALSAEEVGVA 180 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 180 (224)
|++++|+|+.++.+-. ...+... ... .++|+++|+||+|+.+.....++.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~ 54 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKY 54 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHH
Confidence 7899999998863221 1222222 222 36899999999999654333333333
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0017 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
-|.++|++|||||||++-+.+-..+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999986533
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.019 Score=48.92 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=57.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc----CCCCC----CCCCCC-----------CCceeEEEEE-------e-------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS----GNTSL----SHNLKP-----------TEGFNITILQ-------K------- 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~----~~~~~----~~~~~~-----------t~~~~~~~~~-------~------- 96 (224)
.....|+++|--|+||||..-.|.. ....+ .+.+.| .++..++... .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999998665553 11111 011111 0111111111 1
Q ss_pred ---CCeEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHH
Q psy12173 97 ---GEYTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNL 148 (224)
Q Consensus 97 ---~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 148 (224)
...++.++||.|.......+ ....-++|-+++|+|+.-+....+..+.+.+-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 23689999999955443322 11234678999999999886655555555554
No 453
>KOG1424|consensus
Probab=96.61 E-value=0.0043 Score=53.66 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=57.1
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR 189 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 189 (224)
+-++++|.- ++.+|+|+.++|+.++--|.. .-+..+.+... ..+..++++||+||........+.+.+...++
T Consensus 163 E~WRQLWRV-lErSDivvqIVDARnPllfr~--~dLe~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni--- 235 (562)
T KOG1424|consen 163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRS--PDLEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFRQNNI--- 235 (562)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccccCC--hhHHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHHhcCc---
Confidence 445666664 789999999999999843332 22333333322 45788999999999888666777776654433
Q ss_pred ccceeEEEeecCC
Q psy12173 190 QHRIKLIATQAPS 202 (224)
Q Consensus 190 ~~~~~~~~~Sa~~ 202 (224)
+++.-||..
T Consensus 236 ----~~vf~SA~~ 244 (562)
T KOG1424|consen 236 ----PVVFFSALA 244 (562)
T ss_pred ----eEEEEeccc
Confidence 888888886
No 454
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0026 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|+.|||||||++.+..-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3478999999999999999999866
No 455
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.59 E-value=0.0037 Score=48.56 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...-|+++|++|||||||+++|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 45678889999999999999997543
No 456
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.59 E-value=0.002 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999753
No 457
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.59 E-value=0.022 Score=39.25 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=55.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
=+.+|+||||+...|...-... . +....-++. ....+.++|+|+...... ...+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~--~-----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~~--~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKE--A-----GRRVLLVDLDLQFGDDYVVVDLGRSLDEVS--LAALDQADRVFLVTQQDL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhc--C-----CCcEEEEECCCCCCCCEEEEeCCCCcCHHH--HHHHHHcCeEEEEecCCh
Confidence 3567899999877665422111 0 001111110 112799999998665432 335678999999987665
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
. +.......+..+..........+.+++|+
T Consensus 77 ~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4 55555555555544322114567788775
No 458
>PRK06217 hypothetical protein; Validated
Probab=96.57 E-value=0.0021 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+++|.+||||||+.++|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998653
No 459
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.0023 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-|++.|.+|||||||.++|...-
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999998643
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.0021 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 461
>PRK03839 putative kinase; Provisional
Probab=96.54 E-value=0.0023 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|.+||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999865
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=96.52 E-value=0.0032 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 489999999999999999999755
No 463
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.51 E-value=0.0023 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|+.|||||||++-+-+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 367999999999999999998755
No 464
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.50 E-value=0.0065 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....+++.|++|+|||+++..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988643
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.49 E-value=0.0026 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997654
No 466
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.49 E-value=0.0065 Score=45.39 Aligned_cols=25 Identities=40% Similarity=0.384 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.+++.|+.|||||+|++.+..--
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3467999999999999999998754
No 467
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.0082 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+.+.|++|+|||+|+..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998754
No 468
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.45 E-value=0.0028 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++|+|||||++.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445889999999999999998863
No 469
>PRK04195 replication factor C large subunit; Provisional
Probab=96.44 E-value=0.0038 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999998653
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0026 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
--++++||+|+|||||++.+++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999998
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0026 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
No 472
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.42 E-value=0.086 Score=39.41 Aligned_cols=66 Identities=14% Similarity=-0.066 Sum_probs=43.6
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.++|+|+...... ...+..+|.+|++++.+.. ++......+..+... ......++.|+.|....
T Consensus 64 d~viiD~p~~~~~~~--~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERGF--ITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 799999998654332 2346789999999987764 455555544444332 23457789999987644
No 473
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0047 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998764
No 474
>KOG4273|consensus
Probab=96.41 E-value=0.0089 Score=47.28 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNS--GKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~s--GKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+-++++|-.|+ ||-+++.+|....|..+......+.+.-..+..+- -.+.+.-.+-.+++.-......+...+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 346789999998 99999999999888763333333332222221110 11222222222222211122245567899
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGA 171 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 171 (224)
.|||.+....+..+..|+...-- ... .++.++||.|....
T Consensus 84 mvfdlse~s~l~alqdwl~htdi----nsfdillcignkvdrvph 124 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDI----NSFDILLCIGNKVDRVPH 124 (418)
T ss_pred EEEeccchhhhHHHHhhcccccc----ccchhheecccccccccc
Confidence 99999999888877766554311 233 34667899998543
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.40 E-value=0.0031 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988853
No 476
>KOG2423|consensus
Probab=96.39 E-value=0.0017 Score=54.47 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
.....+.|.++|-|++||||++|.|..++... ..+..-.....++-.--..+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk--vAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCK--VAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccccc--ccCCCCcchHHHHHHHHhceeEecCCC
No 477
>PRK14532 adenylate kinase; Provisional
Probab=96.39 E-value=0.0029 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+|+++|+|||||||+..+|....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998644
No 478
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.38 E-value=0.0033 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.37 E-value=0.0033 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999865
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.37 E-value=0.0033 Score=48.00 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++||||||+++.+.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3489999999999999999998754
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.37 E-value=0.0032 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.|+++|++||||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999854
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.37 E-value=0.0036 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|++.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.35 E-value=0.0029 Score=48.72 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|++|||||||.+.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.32 E-value=0.0037 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999865
No 485
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.32 E-value=0.012 Score=47.48 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--|++.|++||||||+++.+...-
T Consensus 81 GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhh
Confidence 368999999999999999987643
No 486
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.31 E-value=0.0037 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999865
No 487
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.30 E-value=0.0046 Score=46.87 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34478999999999999999999865
No 488
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.30 E-value=0.0036 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|.++|+.+||||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 489
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.30 E-value=0.0039 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998864
No 490
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.29 E-value=0.004 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999864
No 491
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.28 E-value=0.004 Score=48.14 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999865
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.28 E-value=0.0039 Score=43.04 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q psy12173 53 RKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999986
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.27 E-value=0.004 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 494
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.004 Score=49.26 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
No 495
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.03 Score=43.26 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-|.+.|.|||||||+.+.|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 478899999999999887764
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.0036 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
-++++||+||||||+++.+.+-.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998663
No 497
>PRK00625 shikimate kinase; Provisional
Probab=96.26 E-value=0.0041 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 498
>PRK13949 shikimate kinase; Provisional
Probab=96.26 E-value=0.0042 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 499
>PRK14531 adenylate kinase; Provisional
Probab=96.26 E-value=0.0042 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+++|+|||||||+.+++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997653
No 500
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0037 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
Done!