Query psy12173
Match_columns 224
No_of_seqs 138 out of 1896
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 20:33:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zd9_A ADP-ribosylation factor 100.0 2.1E-30 7.1E-35 197.6 17.9 165 49-218 19-183 (188)
2 4dkx_A RAS-related protein RAB 100.0 2E-31 6.8E-36 207.7 11.0 157 50-216 11-173 (216)
3 1r8s_A ADP-ribosylation factor 100.0 5.4E-30 1.8E-34 190.4 17.9 160 53-218 1-160 (164)
4 2h57_A ADP-ribosylation factor 100.0 2.2E-30 7.4E-35 197.6 15.9 167 50-221 19-188 (190)
5 1ksh_A ARF-like protein 2; sma 100.0 9.9E-30 3.4E-34 193.1 19.3 162 51-218 17-178 (186)
6 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-29 5.2E-34 189.1 19.7 163 51-219 6-168 (171)
7 1fzq_A ADP-ribosylation factor 100.0 6.9E-30 2.3E-34 193.7 16.5 161 51-217 15-175 (181)
8 1zj6_A ADP-ribosylation factor 100.0 9.3E-30 3.2E-34 193.6 15.8 163 51-219 15-177 (187)
9 2h17_A ADP-ribosylation factor 100.0 6.8E-30 2.3E-34 193.5 14.9 157 50-211 19-175 (181)
10 4bas_A ADP-ribosylation factor 100.0 9.7E-30 3.3E-34 194.9 15.9 169 47-219 12-188 (199)
11 1moz_A ARL1, ADP-ribosylation 100.0 1.4E-29 4.8E-34 191.6 15.1 164 51-220 17-180 (183)
12 2x77_A ADP-ribosylation factor 100.0 2.4E-29 8.2E-34 191.5 15.9 163 51-219 21-183 (189)
13 2b6h_A ADP-ribosylation factor 100.0 1.6E-29 5.5E-34 193.4 14.9 162 50-217 27-188 (192)
14 1m2o_B GTP-binding protein SAR 100.0 7.4E-29 2.5E-33 189.4 16.5 158 51-211 22-184 (190)
15 1f6b_A SAR1; gtpases, N-termin 100.0 4.7E-29 1.6E-33 191.8 13.8 158 51-211 24-191 (198)
16 3ihw_A Centg3; RAS, centaurin, 100.0 6.2E-28 2.1E-32 183.5 15.6 160 47-219 15-180 (184)
17 2hup_A RAS-related protein RAB 100.0 8.5E-28 2.9E-32 185.1 15.4 162 48-219 25-193 (201)
18 2ew1_A RAS-related protein RAB 100.0 1.3E-27 4.4E-32 184.3 15.8 163 48-220 22-190 (201)
19 3o47_A ADP-ribosylation factor 100.0 6E-28 2E-32 199.4 14.5 164 50-219 163-326 (329)
20 2bme_A RAB4A, RAS-related prot 100.0 2.7E-27 9.1E-32 179.4 16.1 161 50-220 8-174 (186)
21 3bc1_A RAS-related protein RAB 100.0 2.9E-27 1E-31 180.0 16.4 161 50-219 9-185 (195)
22 3tkl_A RAS-related protein RAB 100.0 3E-27 1E-31 180.6 15.9 160 50-219 14-179 (196)
23 3kkq_A RAS-related protein M-R 100.0 1.4E-27 4.8E-32 180.6 13.7 160 49-218 15-180 (183)
24 3q72_A GTP-binding protein RAD 100.0 1.3E-27 4.5E-32 177.8 12.9 157 52-219 2-163 (166)
25 3dz8_A RAS-related protein RAB 100.0 5.2E-28 1.8E-32 184.6 10.9 165 46-220 17-187 (191)
26 2a5j_A RAS-related protein RAB 99.9 2E-27 6.8E-32 181.3 14.0 164 48-221 17-186 (191)
27 3tw8_B RAS-related protein RAB 99.9 1.6E-27 5.4E-32 179.5 13.3 158 50-219 7-170 (181)
28 2fu5_C RAS-related protein RAB 99.9 4.6E-28 1.6E-32 183.3 10.3 160 50-219 6-171 (183)
29 3cbq_A GTP-binding protein REM 99.9 2.2E-27 7.4E-32 182.1 14.0 164 47-217 18-186 (195)
30 1c1y_A RAS-related protein RAP 99.9 1.3E-27 4.4E-32 177.8 12.4 159 51-218 2-165 (167)
31 2f7s_A C25KG, RAS-related prot 99.9 1.1E-27 3.9E-32 186.2 12.5 165 46-219 19-199 (217)
32 1zbd_A Rabphilin-3A; G protein 99.9 1E-26 3.6E-31 178.8 17.7 161 50-220 6-172 (203)
33 3lvq_E ARF-GAP with SH3 domain 99.9 3.4E-27 1.2E-31 205.0 16.7 164 50-219 320-483 (497)
34 3t5g_A GTP-binding protein RHE 99.9 1.2E-27 4E-32 180.7 12.1 159 50-217 4-167 (181)
35 3q85_A GTP-binding protein REM 99.9 2.6E-27 8.7E-32 176.7 13.8 159 52-217 2-165 (169)
36 3q3j_B RHO-related GTP-binding 99.9 1E-27 3.4E-32 186.6 11.9 160 48-218 23-202 (214)
37 2oil_A CATX-8, RAS-related pro 99.9 2.8E-27 9.5E-32 180.7 14.0 164 47-220 20-189 (193)
38 2gf9_A RAS-related protein RAB 99.9 3.4E-27 1.2E-31 179.7 13.9 163 49-221 19-187 (189)
39 1u8z_A RAS-related protein RAL 99.9 2.8E-27 9.6E-32 175.8 13.0 159 50-218 2-165 (168)
40 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.1E-26 3.8E-31 174.5 16.3 161 50-218 5-173 (177)
41 1x3s_A RAS-related protein RAB 99.9 6.1E-27 2.1E-31 178.6 15.1 160 50-219 13-177 (195)
42 3oes_A GTPase rhebl1; small GT 99.9 9E-28 3.1E-32 184.8 10.2 163 47-219 19-186 (201)
43 1z0f_A RAB14, member RAS oncog 99.9 7.5E-27 2.6E-31 175.5 14.9 157 50-216 13-175 (179)
44 2bov_A RAla, RAS-related prote 99.9 1.3E-26 4.3E-31 178.4 16.3 160 50-218 12-176 (206)
45 1kao_A RAP2A; GTP-binding prot 99.9 4.3E-27 1.5E-31 174.6 13.2 159 51-219 2-165 (167)
46 3clv_A RAB5 protein, putative; 99.9 1.4E-26 4.8E-31 177.5 16.3 158 49-218 4-203 (208)
47 1z06_A RAS-related protein RAB 99.9 7.2E-27 2.5E-31 177.9 14.5 156 48-212 16-181 (189)
48 2o52_A RAS-related protein RAB 99.9 3E-27 1E-31 181.9 12.5 162 49-220 22-189 (200)
49 1r2q_A RAS-related protein RAB 99.9 4.4E-27 1.5E-31 175.2 13.0 156 50-216 4-165 (170)
50 2il1_A RAB12; G-protein, GDP, 99.9 5.2E-27 1.8E-31 179.3 13.6 160 50-218 24-189 (192)
51 2efe_B Small GTP-binding prote 99.9 1.1E-26 3.9E-31 175.1 15.3 158 50-218 10-173 (181)
52 2yc2_C IFT27, small RAB-relate 99.9 3.2E-27 1.1E-31 181.9 12.3 160 50-218 18-191 (208)
53 2fg5_A RAB-22B, RAS-related pr 99.9 7.2E-27 2.5E-31 178.5 14.1 158 50-218 21-184 (192)
54 2nzj_A GTP-binding protein REM 99.9 2.5E-26 8.5E-31 172.2 16.7 160 51-219 3-168 (175)
55 3reg_A RHO-like small GTPase; 99.9 3E-27 1E-31 180.7 11.7 159 49-218 20-187 (194)
56 2a9k_A RAS-related protein RAL 99.9 8.2E-27 2.8E-31 176.5 14.0 160 50-218 16-180 (187)
57 1ky3_A GTP-binding protein YPT 99.9 1.1E-26 3.7E-31 175.1 14.6 161 50-218 6-177 (182)
58 2bcg_Y Protein YP2, GTP-bindin 99.9 1.2E-26 4E-31 179.0 15.0 159 50-218 6-170 (206)
59 2fn4_A P23, RAS-related protei 99.9 5.2E-27 1.8E-31 176.7 12.7 160 50-219 7-171 (181)
60 4dsu_A GTPase KRAS, isoform 2B 99.9 1.2E-26 4E-31 176.1 14.4 159 51-219 3-165 (189)
61 1z08_A RAS-related protein RAB 99.9 7.4E-27 2.5E-31 174.2 13.0 157 50-217 4-166 (170)
62 1g16_A RAS-related protein SEC 99.9 4.3E-27 1.5E-31 175.4 11.4 157 51-218 2-163 (170)
63 2p5s_A RAS and EF-hand domain 99.9 5E-27 1.7E-31 180.4 11.8 160 46-215 22-193 (199)
64 3t1o_A Gliding protein MGLA; G 99.9 6.6E-27 2.3E-31 178.6 12.1 163 49-221 11-194 (198)
65 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-26 6.2E-31 172.0 14.0 156 50-216 4-165 (170)
66 1ek0_A Protein (GTP-binding pr 99.9 1.6E-26 5.4E-31 172.2 13.4 151 51-211 2-161 (170)
67 2g6b_A RAS-related protein RAB 99.9 3.4E-26 1.2E-30 172.3 15.1 160 50-219 8-173 (180)
68 2hxs_A RAB-26, RAS-related pro 99.9 4.6E-27 1.6E-31 176.8 10.3 160 50-219 4-172 (178)
69 1z2a_A RAS-related protein RAB 99.9 9.7E-27 3.3E-31 173.1 11.9 156 51-218 4-165 (168)
70 2atv_A RERG, RAS-like estrogen 99.9 2E-26 6.7E-31 176.5 13.5 159 50-218 26-190 (196)
71 3cph_A RAS-related protein SEC 99.9 3.5E-26 1.2E-30 177.0 14.8 158 50-218 18-180 (213)
72 2atx_A Small GTP binding prote 99.9 2.6E-26 8.9E-31 175.4 13.8 156 50-216 16-190 (194)
73 3con_A GTPase NRAS; structural 99.9 7.4E-26 2.5E-30 172.2 15.6 160 50-219 19-182 (190)
74 1gwn_A RHO-related GTP-binding 99.9 1.3E-26 4.5E-31 179.2 11.5 161 48-218 24-203 (205)
75 2y8e_A RAB-protein 6, GH09086P 99.9 1.4E-26 4.7E-31 174.1 11.3 157 50-217 12-174 (179)
76 2q3h_A RAS homolog gene family 99.9 1.7E-26 5.9E-31 177.3 12.0 162 48-219 16-195 (201)
77 2iwr_A Centaurin gamma 1; ANK 99.9 8.5E-26 2.9E-30 170.0 15.5 156 50-219 5-169 (178)
78 1vg8_A RAS-related protein RAB 99.9 2.9E-26 1E-30 176.6 13.1 161 50-218 6-174 (207)
79 2ce2_X GTPase HRAS; signaling 99.9 5.7E-26 2E-30 168.2 14.2 158 51-218 2-163 (166)
80 3cpj_B GTP-binding protein YPT 99.9 1.2E-26 4.2E-31 181.3 10.9 158 50-217 11-174 (223)
81 1m7b_A RND3/RHOE small GTP-bin 99.9 1.6E-26 5.5E-31 175.3 11.2 159 50-218 5-182 (184)
82 3c5c_A RAS-like protein 12; GD 99.9 8.6E-27 2.9E-31 177.5 9.6 158 49-216 18-183 (187)
83 4djt_A GTP-binding nuclear pro 99.9 3.2E-26 1.1E-30 178.1 12.5 159 50-219 9-174 (218)
84 2lkc_A Translation initiation 99.9 1.2E-25 4.2E-30 168.9 15.1 163 50-219 6-170 (178)
85 2gco_A H9, RHO-related GTP-bin 99.9 9.1E-26 3.1E-30 173.6 14.4 165 50-219 23-199 (201)
86 3gj0_A GTP-binding nuclear pro 99.9 4.7E-27 1.6E-31 183.3 6.9 160 48-219 11-174 (221)
87 2fh5_B SR-beta, signal recogni 99.9 1.9E-25 6.5E-30 173.2 15.5 125 50-177 5-136 (214)
88 2fv8_A H6, RHO-related GTP-bin 99.9 5.6E-26 1.9E-30 175.6 12.4 166 49-218 22-199 (207)
89 2j0v_A RAC-like GTP-binding pr 99.9 2.5E-26 8.5E-31 178.0 10.3 159 49-217 6-178 (212)
90 2g3y_A GTP-binding protein GEM 99.9 3.7E-25 1.3E-29 171.7 16.8 161 50-217 35-201 (211)
91 2j1l_A RHO-related GTP-binding 99.9 8E-26 2.7E-30 175.7 12.2 166 50-219 32-209 (214)
92 1mh1_A RAC1; GTP-binding, GTPa 99.9 7.2E-26 2.5E-30 171.2 11.7 158 50-219 3-179 (186)
93 2gf0_A GTP-binding protein DI- 99.9 1.2E-25 4.1E-30 172.1 12.3 159 50-218 6-169 (199)
94 2erx_A GTP-binding protein DI- 99.9 1.1E-25 3.9E-30 167.8 11.7 156 52-217 3-164 (172)
95 4gzl_A RAS-related C3 botulinu 99.9 1.1E-25 3.8E-30 173.6 11.3 162 49-215 27-200 (204)
96 3bwd_D RAC-like GTP-binding pr 99.9 1.8E-26 6.3E-31 174.1 6.6 156 50-217 6-178 (182)
97 2zej_A Dardarin, leucine-rich 99.9 7.5E-26 2.6E-30 171.7 8.4 160 52-220 2-178 (184)
98 3l0i_B RAS-related protein RAB 99.9 3.9E-27 1.3E-31 180.9 0.4 152 49-211 30-188 (199)
99 2wji_A Ferrous iron transport 99.9 2.1E-24 7.3E-29 160.9 13.4 148 51-216 2-161 (165)
100 2qu8_A Putative nucleolar GTP- 99.9 5E-24 1.7E-28 167.1 14.5 161 50-219 27-204 (228)
101 2cjw_A GTP-binding protein GEM 99.9 4.4E-24 1.5E-28 163.3 13.7 158 51-217 5-170 (192)
102 2dyk_A GTP-binding protein; GT 99.9 3.6E-24 1.2E-28 158.2 12.5 148 53-216 2-158 (161)
103 3llu_A RAS-related GTP-binding 99.9 1.8E-25 6.1E-30 171.3 5.5 165 48-215 16-193 (196)
104 3r7w_A Gtpase1, GTP-binding pr 99.9 2.8E-24 9.4E-29 175.9 10.7 159 51-216 2-178 (307)
105 3th5_A RAS-related C3 botulinu 99.8 4.4E-26 1.5E-30 175.6 0.0 160 50-214 28-200 (204)
106 1svi_A GTP-binding protein YSX 99.9 1.6E-23 5.5E-28 159.8 13.6 154 50-218 21-193 (195)
107 2gj8_A MNME, tRNA modification 99.9 2.6E-23 9.1E-28 156.1 14.1 153 51-218 3-164 (172)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 1E-24 3.6E-29 177.9 6.5 163 54-220 1-175 (331)
109 2cxx_A Probable GTP-binding pr 99.9 1.3E-24 4.5E-29 164.9 6.5 159 53-219 2-183 (190)
110 2wjg_A FEOB, ferrous iron tran 99.9 2.6E-23 8.7E-28 157.7 11.0 152 50-219 5-168 (188)
111 3a1s_A Iron(II) transport prot 99.9 1.7E-23 5.9E-28 167.1 10.3 152 50-219 3-166 (258)
112 2wkq_A NPH1-1, RAS-related C3 99.9 4.2E-23 1.4E-27 169.9 12.9 157 51-219 154-329 (332)
113 3pqc_A Probable GTP-binding pr 99.9 8.4E-23 2.9E-27 155.4 12.5 158 50-218 21-192 (195)
114 3iby_A Ferrous iron transport 99.9 7.1E-24 2.4E-28 169.2 6.4 145 53-215 2-162 (256)
115 2f9l_A RAB11B, member RAS onco 99.9 1.6E-22 5.4E-27 155.2 13.7 158 50-218 3-166 (199)
116 3i8s_A Ferrous iron transport 99.9 1.3E-23 4.5E-28 169.3 6.8 148 51-216 2-165 (274)
117 4dhe_A Probable GTP-binding pr 99.9 5.2E-23 1.8E-27 160.3 9.4 164 50-219 27-210 (223)
118 2hjg_A GTP-binding protein ENG 99.9 2.6E-22 8.9E-27 171.6 13.8 163 50-220 173-349 (436)
119 3c5h_A Glucocorticoid receptor 99.9 4.4E-24 1.5E-28 170.3 2.5 161 49-218 16-253 (255)
120 3k53_A Ferrous iron transport 99.9 1.7E-22 5.6E-27 162.6 11.2 152 51-219 2-165 (271)
121 1lnz_A SPO0B-associated GTP-bi 99.9 8.9E-23 3E-27 168.8 9.8 165 48-221 154-331 (342)
122 3iev_A GTP-binding protein ERA 99.9 1.2E-21 4.1E-26 160.3 16.3 160 50-218 8-180 (308)
123 1wf3_A GTP-binding protein; GT 99.9 8.7E-22 3E-26 160.5 14.5 154 51-216 6-169 (301)
124 3b1v_A Ferrous iron uptake tra 99.9 2.1E-22 7.1E-27 161.9 10.6 146 52-216 3-160 (272)
125 1oix_A RAS-related protein RAB 99.9 5.4E-22 1.9E-26 151.4 11.8 156 50-216 27-188 (191)
126 3dpu_A RAB family protein; roc 99.9 4.1E-22 1.4E-26 174.5 11.9 156 50-220 39-208 (535)
127 1nrj_B SR-beta, signal recogni 99.9 3.1E-23 1.1E-27 161.1 3.8 152 50-206 10-171 (218)
128 1cip_A Protein (guanine nucleo 99.9 4.7E-22 1.6E-26 165.0 10.2 135 84-219 178-344 (353)
129 4dcu_A GTP-binding protein ENG 99.9 1E-21 3.5E-26 168.8 12.5 163 50-220 193-369 (456)
130 1wb1_A Translation elongation 99.9 1.6E-21 5.4E-26 168.4 12.9 167 47-219 14-188 (482)
131 1mky_A Probable GTP-binding pr 99.9 2.1E-21 7.1E-26 166.2 12.8 153 53-219 2-165 (439)
132 2e87_A Hypothetical protein PH 99.9 7.6E-21 2.6E-25 158.6 15.3 160 50-219 165-335 (357)
133 3gee_A MNME, tRNA modification 99.9 4.2E-21 1.4E-25 165.1 14.1 155 51-219 232-397 (476)
134 1xzp_A Probable tRNA modificat 99.9 2.9E-21 9.8E-26 166.3 12.6 151 52-218 243-403 (482)
135 3sjy_A Translation initiation 99.9 5.8E-21 2E-25 161.7 13.8 161 50-218 6-190 (403)
136 3j2k_7 ERF3, eukaryotic polype 99.9 1.2E-20 4.1E-25 161.3 15.6 155 50-209 15-215 (439)
137 1zcb_A G alpha I/13; GTP-bindi 99.8 2.9E-21 1E-25 160.8 10.5 132 86-219 188-353 (362)
138 3ohm_A Guanine nucleotide-bind 99.8 8.5E-21 2.9E-25 155.5 12.9 135 83-219 151-318 (327)
139 3qq5_A Small GTP-binding prote 99.8 1.8E-21 6.2E-26 164.9 9.0 154 50-218 32-194 (423)
140 1s0u_A EIF-2-gamma, translatio 99.8 2.5E-20 8.6E-25 158.0 15.3 161 50-218 6-196 (408)
141 3p26_A Elongation factor 1 alp 99.8 1.5E-20 5E-25 162.7 13.4 158 49-208 30-227 (483)
142 2hjg_A GTP-binding protein ENG 99.8 2E-21 6.8E-26 166.1 7.8 152 52-218 3-163 (436)
143 1kk1_A EIF2gamma; initiation o 99.8 4.8E-20 1.7E-24 156.4 14.0 161 50-218 8-198 (410)
144 2qtf_A Protein HFLX, GTP-bindi 99.8 1.2E-19 4.1E-24 151.4 14.6 161 54-220 181-354 (364)
145 3geh_A MNME, tRNA modification 99.8 2.7E-20 9.1E-25 159.6 10.8 152 51-219 223-383 (462)
146 1mky_A Probable GTP-binding pr 99.8 7.9E-20 2.7E-24 156.4 13.6 162 51-220 179-355 (439)
147 4dcu_A GTP-binding protein ENG 99.8 1.6E-20 5.4E-25 161.4 8.1 154 49-217 20-182 (456)
148 4fid_A G protein alpha subunit 99.8 9.2E-20 3.2E-24 149.9 12.3 136 84-219 146-328 (340)
149 1zun_B Sulfate adenylate trans 99.8 2.6E-19 8.9E-24 152.9 15.6 156 50-209 22-214 (434)
150 1jny_A EF-1-alpha, elongation 99.8 3.7E-20 1.3E-24 158.2 10.1 154 50-209 4-203 (435)
151 1azs_C GS-alpha; complex (lyas 99.8 6.1E-20 2.1E-24 154.1 11.0 84 86-169 204-297 (402)
152 3izy_P Translation initiation 99.8 1.7E-21 5.7E-26 169.3 1.1 160 51-218 3-166 (537)
153 1zo1_I IF2, translation initia 99.8 3.3E-21 1.1E-25 166.1 2.9 155 51-211 3-159 (501)
154 3lxx_A GTPase IMAP family memb 99.8 7E-19 2.4E-23 138.7 15.3 121 49-171 26-160 (239)
155 2ged_A SR-beta, signal recogni 99.8 1.2E-20 4E-25 143.7 4.6 128 50-182 46-182 (193)
156 2elf_A Protein translation elo 99.8 1.4E-19 4.7E-24 151.4 11.1 146 54-219 23-179 (370)
157 1ega_A Protein (GTP-binding pr 99.8 2.3E-19 7.9E-24 146.2 12.1 154 51-215 7-170 (301)
158 3izq_1 HBS1P, elongation facto 99.8 1.1E-19 3.6E-24 160.9 10.8 157 50-209 165-362 (611)
159 2xtp_A GTPase IMAP family memb 99.8 2.7E-19 9.3E-24 142.8 12.0 164 50-219 20-207 (260)
160 3cb4_D GTP-binding protein LEP 99.8 4.5E-19 1.5E-23 156.1 14.3 154 51-217 3-179 (599)
161 1r5b_A Eukaryotic peptide chai 99.8 3.8E-20 1.3E-24 159.3 7.0 158 48-210 39-243 (467)
162 2ywe_A GTP-binding protein LEP 99.8 6.9E-19 2.4E-23 154.7 14.9 153 51-217 5-181 (600)
163 3lxw_A GTPase IMAP family memb 99.8 7.2E-19 2.5E-23 139.5 12.7 168 49-219 18-207 (247)
164 2c78_A Elongation factor TU-A; 99.8 3.7E-19 1.3E-23 150.7 11.1 149 50-205 9-180 (405)
165 3tr5_A RF-3, peptide chain rel 99.8 3.3E-19 1.1E-23 155.2 10.1 116 51-171 12-149 (528)
166 1f60_A Elongation factor EEF1A 99.8 1.1E-18 3.6E-23 150.0 12.3 154 50-209 5-202 (458)
167 1d2e_A Elongation factor TU (E 99.8 5.1E-19 1.8E-23 149.5 10.0 147 52-205 3-171 (397)
168 2xtz_A Guanine nucleotide-bind 99.8 1.4E-19 4.7E-24 150.2 6.2 123 97-219 181-345 (354)
169 2aka_B Dynamin-1; fusion prote 99.8 7E-18 2.4E-22 137.0 15.7 158 51-216 25-249 (299)
170 3mca_A HBS1, elongation factor 99.8 5.9E-20 2E-24 162.1 2.8 154 49-208 174-372 (592)
171 1g7s_A Translation initiation 99.8 1.7E-18 5.9E-23 152.4 10.9 163 51-219 4-217 (594)
172 3t5d_A Septin-7; GTP-binding p 99.7 3.4E-18 1.2E-22 137.6 8.9 155 51-215 7-199 (274)
173 3avx_A Elongation factor TS, e 99.7 1.2E-17 4.2E-22 154.0 13.6 148 50-204 294-463 (1289)
174 2h5e_A Peptide chain release f 99.7 2.7E-17 9.4E-22 143.2 13.8 147 51-207 12-183 (529)
175 3def_A T7I23.11 protein; chlor 99.7 1.9E-17 6.5E-22 132.3 11.0 120 50-170 34-165 (262)
176 2qag_A Septin-2, protein NEDD5 99.7 2.2E-18 7.4E-23 143.8 4.7 157 51-220 36-234 (361)
177 1udx_A The GTP-binding protein 99.7 1.5E-17 5.2E-22 140.6 9.8 171 41-220 146-325 (416)
178 1pui_A ENGB, probable GTP-bind 99.7 5.9E-17 2E-21 124.7 10.5 157 49-219 23-198 (210)
179 1dar_A EF-G, elongation factor 99.7 2.3E-16 7.9E-21 141.5 15.2 117 50-171 10-144 (691)
180 1jwy_B Dynamin A GTPase domain 99.7 1.8E-16 6E-21 129.7 12.2 118 51-171 23-213 (315)
181 2j69_A Bacterial dynamin-like 99.7 2.2E-16 7.4E-21 141.8 12.9 163 50-218 67-323 (695)
182 2dy1_A Elongation factor G; tr 99.7 1.2E-15 4.1E-20 136.4 16.7 114 51-169 8-139 (665)
183 3t34_A Dynamin-related protein 99.7 6.4E-16 2.2E-20 128.9 12.9 150 51-209 33-251 (360)
184 1h65_A Chloroplast outer envel 99.7 1.8E-15 6.2E-20 121.3 14.6 120 51-171 38-169 (270)
185 2rdo_7 EF-G, elongation factor 99.7 2.2E-15 7.6E-20 135.3 16.4 117 50-171 8-149 (704)
186 2xex_A Elongation factor G; GT 99.7 1E-15 3.5E-20 137.4 13.9 117 50-171 8-142 (693)
187 1wxq_A GTP-binding protein; st 99.7 5E-17 1.7E-21 137.0 5.0 83 53-135 1-114 (397)
188 3vqt_A RF-3, peptide chain rel 99.6 1.3E-15 4.4E-20 133.3 13.1 117 50-171 29-167 (548)
189 2x2e_A Dynamin-1; nitration, h 99.6 2.1E-15 7.3E-20 125.4 11.7 158 51-216 30-254 (353)
190 2qpt_A EH domain-containing pr 99.6 3.5E-15 1.2E-19 130.6 9.7 118 50-171 63-233 (550)
191 3p32_A Probable GTPase RV1496/ 99.6 2.7E-15 9.3E-20 124.9 6.4 111 97-220 170-284 (355)
192 1jal_A YCHF protein; nucleotid 99.6 2.7E-14 9.2E-19 118.4 11.9 82 53-134 3-108 (363)
193 1u0l_A Probable GTPase ENGC; p 99.6 6.8E-16 2.3E-20 125.7 2.1 131 67-211 32-165 (301)
194 1n0u_A EF-2, elongation factor 99.5 1.4E-14 4.8E-19 132.5 8.9 115 50-169 17-163 (842)
195 2qnr_A Septin-2, protein NEDD5 99.5 4.1E-15 1.4E-19 121.1 4.7 155 50-218 16-213 (301)
196 3zvr_A Dynamin-1; hydrolase, D 99.5 2.3E-13 7.8E-18 122.2 15.9 157 51-216 50-274 (772)
197 2dby_A GTP-binding protein; GD 99.5 6.2E-14 2.1E-18 116.8 9.8 82 53-134 2-111 (368)
198 3j25_A Tetracycline resistance 99.5 1.2E-14 3.9E-19 129.5 5.6 115 52-171 2-134 (638)
199 3l82_B F-box only protein 4; T 99.5 3.6E-14 1.2E-18 107.9 7.4 101 105-209 108-213 (227)
200 4a9a_A Ribosome-interacting GT 99.5 3.4E-13 1.2E-17 112.3 12.7 119 49-169 69-195 (376)
201 2www_A Methylmalonic aciduria 99.5 6.4E-14 2.2E-18 116.2 7.9 110 97-219 165-278 (349)
202 2p67_A LAO/AO transport system 99.5 1.8E-14 6E-19 119.3 3.4 110 97-219 147-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.5 1.1E-13 3.8E-18 110.0 7.7 120 99-220 109-257 (262)
204 4fn5_A EF-G 1, elongation fact 99.4 1.3E-12 4.4E-17 117.7 14.5 117 50-171 11-152 (709)
205 2qag_C Septin-7; cell cycle, c 99.4 1.5E-13 5.2E-18 116.2 7.7 152 50-209 29-217 (418)
206 2wsm_A Hydrogenase expression/ 99.4 3.5E-14 1.2E-18 110.0 3.3 151 51-219 29-213 (221)
207 3l2o_B F-box only protein 4; s 99.4 3.2E-13 1.1E-17 107.5 4.6 102 105-210 193-299 (312)
208 2qm8_A GTPase/ATPase; G protei 99.3 7.7E-12 2.6E-16 103.2 10.0 110 97-219 146-260 (337)
209 2hf9_A Probable hydrogenase ni 99.3 3.1E-12 1.1E-16 99.3 6.7 149 51-219 37-223 (226)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 8.8E-12 3E-16 104.3 8.0 88 50-137 20-131 (396)
211 2yv5_A YJEQ protein; hydrolase 98.9 2.9E-10 1E-14 92.4 3.1 90 109-209 66-159 (302)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.9E-09 1.3E-13 88.4 9.8 85 50-134 18-127 (392)
213 2j37_W Signal recognition part 98.8 4.1E-08 1.4E-12 84.8 12.6 158 51-217 100-310 (504)
214 2qag_B Septin-6, protein NEDD5 98.7 3.7E-08 1.3E-12 83.2 7.6 113 53-171 43-191 (427)
215 3ec1_A YQEH GTPase; atnos1, at 98.7 5.8E-10 2E-14 93.1 -3.3 112 52-171 162-289 (369)
216 1puj_A YLQF, conserved hypothe 98.7 4.8E-08 1.6E-12 78.5 7.5 102 103-219 3-105 (282)
217 3sop_A Neuronal-specific septi 98.6 2.1E-07 7.1E-12 74.3 9.2 114 52-171 2-155 (270)
218 3h2y_A GTPase family protein; 98.6 1.1E-08 3.6E-13 85.4 0.8 117 52-176 160-293 (368)
219 1tq4_A IIGP1, interferon-induc 98.5 1.2E-06 4.1E-11 73.9 12.0 157 53-218 70-251 (413)
220 3h2y_A GTPase family protein; 98.5 1.1E-07 3.8E-12 79.2 4.9 100 108-217 55-157 (368)
221 3ec1_A YQEH GTPase; atnos1, at 98.4 2.4E-07 8.1E-12 77.2 4.5 101 108-218 57-160 (369)
222 1puj_A YLQF, conserved hypothe 98.3 5.2E-07 1.8E-11 72.4 5.0 57 51-110 119-176 (282)
223 3szr_A Interferon-induced GTP- 98.3 2.7E-06 9.1E-11 75.4 9.7 26 53-78 46-71 (608)
224 3dm5_A SRP54, signal recogniti 98.2 1.5E-06 5.3E-11 73.6 6.0 114 51-171 99-254 (443)
225 3cnl_A YLQF, putative uncharac 98.2 9.2E-07 3.1E-11 70.2 3.3 55 53-110 100-155 (262)
226 1f5n_A Interferon-induced guan 98.1 3.8E-06 1.3E-10 73.8 6.7 61 50-110 36-102 (592)
227 2v3c_C SRP54, signal recogniti 98.0 1.1E-05 3.6E-10 68.6 7.4 112 52-171 99-253 (432)
228 3kl4_A SRP54, signal recogniti 98.0 1.8E-05 6.2E-10 67.0 8.4 113 52-171 97-253 (433)
229 1t9h_A YLOQ, probable GTPase E 97.9 1E-05 3.4E-10 65.6 4.5 81 118-208 82-166 (307)
230 3cnl_A YLQF, putative uncharac 97.9 2E-06 7E-11 68.2 0.3 88 106-211 4-92 (262)
231 1j8m_F SRP54, signal recogniti 97.8 5.2E-05 1.8E-09 61.2 7.9 112 52-171 98-254 (297)
232 1bif_A 6-phosphofructo-2-kinas 97.4 2.5E-05 8.7E-10 67.0 0.4 92 51-146 38-143 (469)
233 2rcn_A Probable GTPase ENGC; Y 97.3 0.00034 1.2E-08 57.8 6.3 81 118-207 126-207 (358)
234 2xxa_A Signal recognition part 97.2 0.0007 2.4E-08 57.4 6.8 113 51-171 99-255 (433)
235 1ye8_A Protein THEP1, hypothet 97.2 0.00022 7.5E-09 53.0 3.1 23 53-75 1-23 (178)
236 3q5d_A Atlastin-1; G protein, 97.1 0.00062 2.1E-08 57.9 5.7 26 50-75 65-90 (447)
237 1kgd_A CASK, peripheral plasma 96.9 0.00047 1.6E-08 51.1 2.9 24 53-76 6-29 (180)
238 1lvg_A Guanylate kinase, GMP k 96.8 0.00055 1.9E-08 51.6 2.9 23 53-75 5-27 (198)
239 1zp6_A Hypothetical protein AT 96.8 0.00067 2.3E-08 50.4 3.0 23 53-75 10-32 (191)
240 3tr0_A Guanylate kinase, GMP k 96.8 0.00063 2.1E-08 51.1 2.8 23 53-75 8-30 (205)
241 4gp7_A Metallophosphoesterase; 96.8 0.00069 2.4E-08 49.8 2.8 20 54-73 11-30 (171)
242 3a00_A Guanylate kinase, GMP k 96.7 0.0007 2.4E-08 50.4 2.7 23 54-76 3-25 (186)
243 1t9h_A YLOQ, probable GTPase E 96.7 0.00039 1.3E-08 56.3 1.2 25 52-76 173-197 (307)
244 3ney_A 55 kDa erythrocyte memb 96.7 0.0011 3.8E-08 50.0 3.6 27 50-76 17-43 (197)
245 1znw_A Guanylate kinase, GMP k 96.7 0.00078 2.7E-08 51.1 2.8 24 53-76 21-44 (207)
246 4dzz_A Plasmid partitioning pr 96.7 0.0058 2E-07 45.7 7.6 69 98-170 75-144 (206)
247 3asz_A Uridine kinase; cytidin 96.6 0.001 3.4E-08 50.4 3.0 24 52-75 6-29 (211)
248 1s96_A Guanylate kinase, GMP k 96.6 0.00094 3.2E-08 51.3 2.8 25 52-76 16-40 (219)
249 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.8E-08 49.8 3.2 25 52-76 6-30 (207)
250 1z6g_A Guanylate kinase; struc 96.6 0.00096 3.3E-08 51.1 2.8 25 52-76 23-47 (218)
251 3c8u_A Fructokinase; YP_612366 96.6 0.0011 3.6E-08 50.3 3.0 26 51-76 21-46 (208)
252 1knq_A Gluconate kinase; ALFA/ 96.6 0.0013 4.5E-08 48.2 3.4 23 52-74 8-30 (175)
253 3tif_A Uncharacterized ABC tra 96.6 0.0011 3.7E-08 51.5 3.0 26 51-76 30-55 (235)
254 3lw7_A Adenylate kinase relate 96.6 0.0014 4.6E-08 47.7 3.2 20 53-72 2-21 (179)
255 1htw_A HI0065; nucleotide-bind 96.6 0.0012 4E-08 48.1 2.8 24 53-76 34-57 (158)
256 2pcj_A ABC transporter, lipopr 96.5 0.0013 4.3E-08 50.7 2.9 25 52-76 30-54 (224)
257 3tau_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 49.9 2.9 25 52-76 8-32 (208)
258 1kag_A SKI, shikimate kinase I 96.5 0.0013 4.5E-08 48.0 2.8 23 53-75 5-27 (173)
259 2onk_A Molybdate/tungstate ABC 96.5 0.0015 5.1E-08 50.9 3.2 24 53-76 25-48 (240)
260 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 48.1 3.3 23 52-74 3-25 (192)
261 1sgw_A Putative ABC transporte 96.5 0.0016 5.4E-08 49.9 3.1 24 53-76 36-59 (214)
262 4eun_A Thermoresistant glucoki 96.5 0.0016 5.6E-08 48.9 3.2 23 52-74 29-51 (200)
263 2cbz_A Multidrug resistance-as 96.5 0.0017 5.8E-08 50.5 3.3 26 51-76 30-55 (237)
264 1b0u_A Histidine permease; ABC 96.5 0.0016 5.4E-08 51.4 3.1 26 51-76 31-56 (262)
265 3gfo_A Cobalt import ATP-bindi 96.5 0.0016 5.4E-08 51.8 3.1 25 52-76 34-58 (275)
266 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.1E-08 47.1 3.2 22 54-75 3-24 (173)
267 2bdt_A BH3686; alpha-beta prot 96.4 0.0017 5.8E-08 48.2 3.0 21 54-74 4-24 (189)
268 1y63_A LMAJ004144AAA protein; 96.4 0.0021 7.2E-08 47.7 3.6 25 51-75 9-33 (184)
269 1g6h_A High-affinity branched- 96.4 0.0016 5.6E-08 51.2 3.0 26 51-76 32-57 (257)
270 2bbw_A Adenylate kinase 4, AK4 96.4 0.0019 6.4E-08 50.3 3.3 21 53-73 28-48 (246)
271 2pze_A Cystic fibrosis transme 96.4 0.0019 6.6E-08 49.9 3.3 26 51-76 33-58 (229)
272 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.9E-08 51.4 3.1 25 52-76 37-61 (266)
273 1mv5_A LMRA, multidrug resista 96.4 0.0019 6.6E-08 50.3 3.3 26 51-76 27-52 (243)
274 1ex7_A Guanylate kinase; subst 96.4 0.0019 6.4E-08 48.3 3.1 22 55-76 4-25 (186)
275 1ly1_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 47.3 3.1 21 54-74 4-24 (181)
276 3fb4_A Adenylate kinase; psych 96.4 0.0019 6.6E-08 49.0 3.2 22 53-74 1-22 (216)
277 2qor_A Guanylate kinase; phosp 96.4 0.0018 6.3E-08 48.8 3.1 25 52-76 12-36 (204)
278 2ff7_A Alpha-hemolysin translo 96.4 0.002 6.7E-08 50.4 3.3 26 51-76 34-59 (247)
279 1ji0_A ABC transporter; ATP bi 96.4 0.0018 6.3E-08 50.4 3.0 25 52-76 32-56 (240)
280 2olj_A Amino acid ABC transpor 96.4 0.0019 6.5E-08 51.0 3.1 25 52-76 50-74 (263)
281 2i3b_A HCR-ntpase, human cance 96.4 0.0017 5.8E-08 48.7 2.7 23 54-76 3-25 (189)
282 3dl0_A Adenylate kinase; phosp 96.4 0.0021 7E-08 48.8 3.2 22 53-74 1-22 (216)
283 1vpl_A ABC transporter, ATP-bi 96.4 0.002 6.7E-08 50.7 3.1 25 52-76 41-65 (256)
284 2qi9_C Vitamin B12 import ATP- 96.4 0.0022 7.4E-08 50.3 3.3 24 53-76 27-50 (249)
285 2if2_A Dephospho-COA kinase; a 96.4 0.002 6.7E-08 48.5 3.0 22 53-74 2-23 (204)
286 3n70_A Transport activator; si 96.3 0.004 1.4E-07 44.2 4.5 25 52-76 24-48 (145)
287 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0021 7E-08 50.4 3.1 24 52-75 29-52 (250)
288 2ghi_A Transport protein; mult 96.3 0.0022 7.6E-08 50.5 3.3 26 51-76 45-70 (260)
289 3ec2_A DNA replication protein 96.3 0.0016 5.6E-08 47.9 2.4 24 52-75 38-61 (180)
290 3cm0_A Adenylate kinase; ATP-b 96.3 0.0025 8.5E-08 47.0 3.4 23 52-74 4-26 (186)
291 1tev_A UMP-CMP kinase; ploop, 96.3 0.0025 8.4E-08 47.3 3.3 23 52-74 3-25 (196)
292 2rcn_A Probable GTPase ENGC; Y 96.3 0.0023 7.9E-08 52.8 3.4 25 53-77 216-240 (358)
293 3b85_A Phosphate starvation-in 96.3 0.0017 5.8E-08 49.4 2.4 22 54-75 24-45 (208)
294 1qhx_A CPT, protein (chloramph 96.3 0.0026 9E-08 46.6 3.4 23 53-75 4-26 (178)
295 2ihy_A ABC transporter, ATP-bi 96.3 0.0023 8E-08 51.0 3.3 25 52-76 47-71 (279)
296 2eyu_A Twitching motility prot 96.3 0.0022 7.5E-08 50.6 3.1 24 52-75 25-48 (261)
297 2zu0_C Probable ATP-dependent 96.3 0.0025 8.5E-08 50.4 3.4 24 52-75 46-69 (267)
298 2jaq_A Deoxyguanosine kinase; 96.3 0.0026 8.8E-08 47.5 3.3 21 54-74 2-22 (205)
299 2plr_A DTMP kinase, probable t 96.3 0.0027 9.4E-08 47.7 3.5 24 52-75 4-27 (213)
300 1cke_A CK, MSSA, protein (cyti 96.3 0.0023 8E-08 48.8 3.1 23 53-75 6-28 (227)
301 2ehv_A Hypothetical protein PH 96.3 0.0024 8.1E-08 49.4 3.1 23 51-73 29-51 (251)
302 2ixe_A Antigen peptide transpo 96.3 0.0025 8.6E-08 50.5 3.3 26 51-76 44-69 (271)
303 2nq2_C Hypothetical ABC transp 96.3 0.0023 8E-08 50.2 3.0 25 52-76 31-55 (253)
304 2yz2_A Putative ABC transporte 96.2 0.0024 8.1E-08 50.5 3.0 26 51-76 32-57 (266)
305 1jjv_A Dephospho-COA kinase; P 96.2 0.0028 9.6E-08 47.7 3.3 22 53-74 3-24 (206)
306 3sr0_A Adenylate kinase; phosp 96.2 0.0028 9.6E-08 48.2 3.3 24 53-76 1-24 (206)
307 3t61_A Gluconokinase; PSI-biol 96.2 0.0027 9.3E-08 47.7 3.2 23 53-75 19-41 (202)
308 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 9.9E-08 47.5 3.3 23 52-74 25-47 (199)
309 1ukz_A Uridylate kinase; trans 96.2 0.0036 1.2E-07 46.9 3.8 24 51-74 14-37 (203)
310 1nks_A Adenylate kinase; therm 96.2 0.0029 9.8E-08 46.8 3.2 21 54-74 3-23 (194)
311 2jeo_A Uridine-cytidine kinase 96.2 0.0028 9.7E-08 49.2 3.2 25 50-74 23-47 (245)
312 2v9p_A Replication protein E1; 96.2 0.0025 8.7E-08 51.4 3.0 24 51-74 125-148 (305)
313 2pjz_A Hypothetical protein ST 96.2 0.003 1E-07 49.9 3.3 25 52-76 30-54 (263)
314 3lnc_A Guanylate kinase, GMP k 96.2 0.0017 5.9E-08 49.9 1.8 24 52-75 27-51 (231)
315 4a74_A DNA repair and recombin 96.1 0.0025 8.6E-08 48.6 2.7 23 53-75 26-48 (231)
316 2rhm_A Putative kinase; P-loop 96.1 0.0033 1.1E-07 46.6 3.2 23 52-74 5-27 (193)
317 2cdn_A Adenylate kinase; phosp 96.1 0.004 1.4E-07 46.7 3.7 24 51-74 19-42 (201)
318 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 47.7 3.2 22 53-74 1-22 (214)
319 3uie_A Adenylyl-sulfate kinase 96.1 0.0034 1.2E-07 47.1 3.2 25 51-75 24-48 (200)
320 2pt5_A Shikimate kinase, SK; a 96.1 0.0036 1.2E-07 45.3 3.2 22 53-74 1-22 (168)
321 2qt1_A Nicotinamide riboside k 96.1 0.0042 1.4E-07 46.8 3.7 24 52-75 21-44 (207)
322 3iij_A Coilin-interacting nucl 96.1 0.0039 1.3E-07 45.8 3.3 23 52-74 11-33 (180)
323 1aky_A Adenylate kinase; ATP:A 96.1 0.004 1.4E-07 47.4 3.4 23 52-74 4-26 (220)
324 3trf_A Shikimate kinase, SK; a 96.1 0.0037 1.3E-07 46.1 3.2 22 53-74 6-27 (185)
325 2v54_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 46.5 3.4 24 52-75 4-27 (204)
326 1qf9_A UMP/CMP kinase, protein 96.0 0.0045 1.5E-07 45.7 3.6 22 53-74 7-28 (194)
327 3aez_A Pantothenate kinase; tr 96.0 0.004 1.4E-07 50.4 3.4 25 51-75 89-113 (312)
328 2bbs_A Cystic fibrosis transme 96.0 0.0036 1.2E-07 50.2 3.1 25 52-76 64-88 (290)
329 1nn5_A Similar to deoxythymidy 96.0 0.0041 1.4E-07 46.9 3.3 23 52-74 9-31 (215)
330 2c95_A Adenylate kinase 1; tra 96.0 0.0043 1.5E-07 46.0 3.4 23 52-74 9-31 (196)
331 1u0l_A Probable GTPase ENGC; p 96.0 0.0048 1.7E-07 49.6 3.8 27 52-78 169-195 (301)
332 2wwf_A Thymidilate kinase, put 96.0 0.005 1.7E-07 46.3 3.7 23 52-74 10-32 (212)
333 1via_A Shikimate kinase; struc 96.0 0.0039 1.4E-07 45.6 2.9 22 54-75 6-27 (175)
334 2x8a_A Nuclear valosin-contain 96.0 0.0035 1.2E-07 49.7 2.8 22 54-75 46-67 (274)
335 1np6_A Molybdopterin-guanine d 96.0 0.0044 1.5E-07 45.8 3.1 23 53-75 7-29 (174)
336 3tlx_A Adenylate kinase 2; str 95.9 0.0049 1.7E-07 47.9 3.5 24 51-74 28-51 (243)
337 2yvu_A Probable adenylyl-sulfa 95.9 0.0057 1.9E-07 45.2 3.7 25 51-75 12-36 (186)
338 2vli_A Antibiotic resistance p 95.9 0.0032 1.1E-07 46.3 2.3 23 52-74 5-27 (183)
339 2yv5_A YJEQ protein; hydrolase 95.9 0.0044 1.5E-07 49.9 3.3 24 52-76 165-188 (302)
340 1jbk_A CLPB protein; beta barr 95.9 0.0048 1.7E-07 45.1 3.3 24 52-75 43-66 (195)
341 3fvq_A Fe(3+) IONS import ATP- 95.9 0.004 1.4E-07 51.4 3.0 24 53-76 31-54 (359)
342 1zd8_A GTP:AMP phosphotransfer 95.9 0.0047 1.6E-07 47.3 3.2 22 53-74 8-29 (227)
343 2kjq_A DNAA-related protein; s 95.9 0.0029 1E-07 45.4 1.9 25 52-76 36-60 (149)
344 1lw7_A Transcriptional regulat 95.9 0.0033 1.1E-07 51.9 2.5 25 52-76 170-194 (365)
345 3jvv_A Twitching mobility prot 95.9 0.0038 1.3E-07 51.5 2.8 22 54-75 125-146 (356)
346 1uf9_A TT1252 protein; P-loop, 95.9 0.0051 1.7E-07 45.9 3.3 25 51-75 7-31 (203)
347 3nh6_A ATP-binding cassette SU 95.9 0.0029 9.9E-08 51.1 2.0 25 52-76 80-104 (306)
348 1ixz_A ATP-dependent metallopr 95.9 0.0042 1.4E-07 48.4 2.9 22 54-75 51-72 (254)
349 2f1r_A Molybdopterin-guanine d 95.9 0.002 7E-08 47.4 0.9 70 54-131 4-76 (171)
350 1z47_A CYSA, putative ABC-tran 95.9 0.0046 1.6E-07 51.0 3.1 25 52-76 41-65 (355)
351 2xb4_A Adenylate kinase; ATP-b 95.9 0.0053 1.8E-07 47.0 3.3 21 54-74 2-22 (223)
352 2pbr_A DTMP kinase, thymidylat 95.9 0.0052 1.8E-07 45.4 3.2 21 54-74 2-22 (195)
353 3be4_A Adenylate kinase; malar 95.8 0.0057 1.9E-07 46.6 3.4 23 52-74 5-27 (217)
354 2yyz_A Sugar ABC transporter, 95.8 0.0048 1.6E-07 50.9 3.1 25 52-76 29-53 (359)
355 4e22_A Cytidylate kinase; P-lo 95.8 0.0058 2E-07 47.8 3.5 23 51-73 26-48 (252)
356 3tui_C Methionine import ATP-b 95.8 0.0049 1.7E-07 50.9 3.2 25 52-76 54-78 (366)
357 3rlf_A Maltose/maltodextrin im 95.8 0.005 1.7E-07 51.2 3.2 24 53-76 30-53 (381)
358 2it1_A 362AA long hypothetical 95.8 0.005 1.7E-07 50.9 3.2 25 52-76 29-53 (362)
359 3umf_A Adenylate kinase; rossm 95.8 0.0071 2.4E-07 46.3 3.8 23 54-76 31-53 (217)
360 1zak_A Adenylate kinase; ATP:A 95.8 0.0051 1.8E-07 46.9 3.0 22 53-74 6-27 (222)
361 2bwj_A Adenylate kinase 5; pho 95.8 0.0059 2E-07 45.4 3.2 23 53-75 13-35 (199)
362 1uj2_A Uridine-cytidine kinase 95.8 0.0058 2E-07 47.7 3.3 24 51-74 21-44 (252)
363 3kta_A Chromosome segregation 95.8 0.0055 1.9E-07 45.1 3.0 21 54-74 28-48 (182)
364 2z0h_A DTMP kinase, thymidylat 95.8 0.0063 2.2E-07 45.1 3.3 22 54-75 2-23 (197)
365 1g29_1 MALK, maltose transport 95.7 0.0054 1.9E-07 50.9 3.1 24 53-76 30-53 (372)
366 1rz3_A Hypothetical protein rb 95.7 0.006 2E-07 45.9 3.1 23 52-74 22-44 (201)
367 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.005 1.7E-07 50.3 2.8 24 53-76 172-195 (330)
368 1v43_A Sugar-binding transport 95.7 0.0056 1.9E-07 50.8 3.2 25 52-76 37-61 (372)
369 2iyv_A Shikimate kinase, SK; t 95.7 0.0053 1.8E-07 45.2 2.7 21 54-74 4-24 (184)
370 3cwq_A Para family chromosome 95.7 0.054 1.8E-06 40.9 8.5 68 97-170 66-134 (209)
371 2gza_A Type IV secretion syste 95.7 0.0049 1.7E-07 50.9 2.8 25 52-76 175-199 (361)
372 1gvn_B Zeta; postsegregational 95.7 0.0063 2.2E-07 48.6 3.3 23 52-74 33-55 (287)
373 1e6c_A Shikimate kinase; phosp 95.7 0.006 2.1E-07 44.3 2.9 21 54-74 4-24 (173)
374 1ak2_A Adenylate kinase isoenz 95.7 0.0073 2.5E-07 46.4 3.5 24 52-75 16-39 (233)
375 2ewv_A Twitching motility prot 95.7 0.0056 1.9E-07 50.8 3.0 24 52-75 136-159 (372)
376 3tqc_A Pantothenate kinase; bi 95.7 0.007 2.4E-07 49.2 3.4 24 51-74 91-114 (321)
377 2ze6_A Isopentenyl transferase 95.7 0.0063 2.1E-07 47.6 3.1 21 54-74 3-23 (253)
378 1sq5_A Pantothenate kinase; P- 95.7 0.0053 1.8E-07 49.5 2.7 24 52-75 80-103 (308)
379 1rj9_A FTSY, signal recognitio 95.6 0.0058 2E-07 49.3 2.8 23 52-74 102-124 (304)
380 1odf_A YGR205W, hypothetical 3 95.6 0.0075 2.6E-07 48.3 3.4 24 51-74 30-53 (290)
381 1iy2_A ATP-dependent metallopr 95.6 0.0061 2.1E-07 48.2 2.9 23 54-76 75-97 (278)
382 2pez_A Bifunctional 3'-phospho 95.6 0.0074 2.5E-07 44.3 3.2 23 52-74 5-27 (179)
383 1zuh_A Shikimate kinase; alpha 95.6 0.0078 2.7E-07 43.6 3.2 22 53-74 8-29 (168)
384 3b9q_A Chloroplast SRP recepto 95.6 0.0061 2.1E-07 49.1 2.8 23 52-74 100-122 (302)
385 1xjc_A MOBB protein homolog; s 95.6 0.0086 2.9E-07 44.0 3.4 23 53-75 5-27 (169)
386 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.007 2.4E-07 46.0 3.0 22 53-74 24-45 (235)
387 1p9r_A General secretion pathw 95.6 0.0059 2E-07 51.5 2.8 23 53-75 168-190 (418)
388 1in4_A RUVB, holliday junction 95.6 0.0062 2.1E-07 49.6 2.8 23 53-75 52-74 (334)
389 3d31_A Sulfate/molybdate ABC t 95.6 0.0045 1.5E-07 50.9 1.9 24 53-76 27-50 (348)
390 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0082 2.8E-07 43.0 3.1 20 54-73 25-44 (149)
391 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0084 2.9E-07 47.0 3.4 22 53-74 5-26 (260)
392 2p65_A Hypothetical protein PF 95.5 0.0061 2.1E-07 44.5 2.4 24 52-75 43-66 (187)
393 3gd7_A Fusion complex of cysti 95.5 0.0073 2.5E-07 50.4 3.0 25 52-76 47-71 (390)
394 1vht_A Dephospho-COA kinase; s 95.5 0.0093 3.2E-07 45.2 3.4 23 52-74 4-26 (218)
395 3bos_A Putative DNA replicatio 95.5 0.0087 3E-07 45.6 3.3 24 52-75 52-75 (242)
396 3r20_A Cytidylate kinase; stru 95.5 0.0089 3.1E-07 46.2 3.3 24 51-74 8-31 (233)
397 2oap_1 GSPE-2, type II secreti 95.5 0.0072 2.5E-07 52.3 3.0 24 53-76 261-284 (511)
398 2p5t_B PEZT; postsegregational 95.5 0.0063 2.2E-07 47.5 2.4 24 52-75 32-55 (253)
399 1gtv_A TMK, thymidylate kinase 95.5 0.0035 1.2E-07 47.3 0.9 22 54-75 2-23 (214)
400 3e70_C DPA, signal recognition 95.5 0.0074 2.5E-07 49.2 2.9 138 51-208 128-309 (328)
401 1lv7_A FTSH; alpha/beta domain 95.5 0.0089 3.1E-07 46.6 3.3 23 53-75 46-68 (257)
402 2vp4_A Deoxynucleoside kinase; 95.4 0.0086 2.9E-07 46.0 3.1 25 51-75 19-43 (230)
403 4ido_A Atlastin-1; GTPase, GTP 95.4 0.028 9.5E-07 47.7 6.2 60 50-109 65-150 (457)
404 2w58_A DNAI, primosome compone 95.4 0.01 3.5E-07 44.3 3.3 23 53-75 55-77 (202)
405 1oxx_K GLCV, glucose, ABC tran 95.3 0.0045 1.5E-07 51.0 1.2 24 53-76 32-55 (353)
406 2grj_A Dephospho-COA kinase; T 95.3 0.012 4.1E-07 44.1 3.2 26 50-75 10-35 (192)
407 2cvh_A DNA repair and recombin 95.2 0.011 3.7E-07 44.6 3.0 23 52-74 20-42 (220)
408 1cr0_A DNA primase/helicase; R 95.2 0.0091 3.1E-07 47.6 2.7 25 51-75 34-58 (296)
409 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.0088 3E-07 51.1 2.5 24 52-75 138-161 (460)
410 1n0w_A DNA repair protein RAD5 95.2 0.012 4E-07 45.2 3.1 24 52-75 24-47 (243)
411 2og2_A Putative signal recogni 95.2 0.01 3.5E-07 49.0 2.8 24 51-74 156-179 (359)
412 1m7g_A Adenylylsulfate kinase; 95.2 0.013 4.6E-07 44.2 3.3 24 52-75 25-48 (211)
413 2f6r_A COA synthase, bifunctio 95.2 0.013 4.5E-07 46.5 3.4 24 51-74 74-97 (281)
414 3pfi_A Holliday junction ATP-d 95.1 0.12 4.1E-06 41.7 9.2 24 52-75 55-78 (338)
415 2obl_A ESCN; ATPase, hydrolase 95.1 0.011 3.9E-07 48.5 2.9 26 51-76 70-95 (347)
416 2chg_A Replication factor C sm 95.1 0.013 4.4E-07 43.9 3.0 22 54-75 40-61 (226)
417 1yqt_A RNAse L inhibitor; ATP- 95.1 0.013 4.4E-07 51.0 3.4 26 51-76 46-71 (538)
418 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.015 5.2E-07 45.1 3.5 24 52-75 39-62 (262)
419 3nwj_A ATSK2; P loop, shikimat 95.1 0.012 4E-07 46.1 2.8 23 52-74 48-70 (250)
420 3h4m_A Proteasome-activating n 95.1 0.015 5E-07 45.9 3.4 24 52-75 51-74 (285)
421 1njg_A DNA polymerase III subu 95.0 0.013 4.5E-07 44.4 3.0 21 54-74 47-67 (250)
422 4eaq_A DTMP kinase, thymidylat 95.0 0.016 5.5E-07 44.6 3.5 25 51-75 25-49 (229)
423 3qf7_A RAD50; ABC-ATPase, ATPa 95.0 0.013 4.5E-07 48.4 3.1 20 54-73 25-44 (365)
424 2yhs_A FTSY, cell division pro 95.0 0.012 4E-07 50.6 2.9 24 51-74 292-315 (503)
425 1nij_A Hypothetical protein YJ 95.0 0.011 3.6E-07 48.0 2.5 24 53-76 5-28 (318)
426 3t15_A Ribulose bisphosphate c 95.0 0.015 5.2E-07 46.4 3.3 24 52-75 36-59 (293)
427 3ozx_A RNAse L inhibitor; ATP 95.0 0.013 4.5E-07 51.0 3.1 26 53-78 26-51 (538)
428 3b9p_A CG5977-PA, isoform A; A 95.0 0.014 4.9E-07 46.3 3.1 24 52-75 54-77 (297)
429 3co5_A Putative two-component 95.0 0.0092 3.2E-07 42.2 1.8 25 52-76 27-51 (143)
430 1ltq_A Polynucleotide kinase; 94.9 0.015 5.1E-07 46.4 3.1 22 53-74 3-24 (301)
431 3syl_A Protein CBBX; photosynt 94.9 0.018 6.3E-07 45.9 3.6 23 52-74 67-89 (309)
432 3cf0_A Transitional endoplasmi 94.8 0.016 5.6E-07 46.4 3.2 24 52-75 49-72 (301)
433 1q3t_A Cytidylate kinase; nucl 94.8 0.02 6.8E-07 44.1 3.5 24 51-74 15-38 (236)
434 3b60_A Lipid A export ATP-bind 94.8 0.02 6.7E-07 50.4 3.8 24 53-76 370-393 (582)
435 3ake_A Cytidylate kinase; CMP 94.8 0.019 6.6E-07 42.8 3.3 21 54-74 4-24 (208)
436 1d2n_A N-ethylmaleimide-sensit 94.8 0.021 7.2E-07 44.8 3.6 25 51-75 63-87 (272)
437 3euj_A Chromosome partition pr 94.8 0.015 5.1E-07 49.9 2.9 22 53-74 30-51 (483)
438 3gmt_A Adenylate kinase; ssgci 94.8 0.02 6.9E-07 44.1 3.3 26 50-75 6-31 (230)
439 1tue_A Replication protein E1; 94.7 0.015 5.2E-07 44.0 2.5 22 53-74 59-80 (212)
440 1svm_A Large T antigen; AAA+ f 94.7 0.018 6.2E-07 47.8 3.2 24 51-74 168-191 (377)
441 1l8q_A Chromosomal replication 94.7 0.015 5.2E-07 46.9 2.7 23 53-75 38-60 (324)
442 3b5x_A Lipid A export ATP-bind 94.7 0.021 7.3E-07 50.1 3.8 24 53-76 370-393 (582)
443 4b4t_M 26S protease regulatory 94.7 0.019 6.5E-07 48.5 3.3 25 51-75 214-238 (434)
444 3j16_B RLI1P; ribosome recycli 94.7 0.018 6E-07 50.9 3.2 27 52-78 103-129 (608)
445 1nlf_A Regulatory protein REPA 94.6 0.018 6.2E-07 45.5 2.9 24 51-74 29-52 (279)
446 1yqt_A RNAse L inhibitor; ATP- 94.6 0.02 6.9E-07 49.8 3.4 26 53-78 313-338 (538)
447 2dpy_A FLII, flagellum-specifi 94.6 0.018 6E-07 48.9 2.9 25 52-76 157-181 (438)
448 2h92_A Cytidylate kinase; ross 94.6 0.02 6.9E-07 43.3 2.9 23 52-74 3-25 (219)
449 3bk7_A ABC transporter ATP-bin 94.6 0.02 7E-07 50.5 3.3 27 51-77 116-142 (607)
450 3qks_A DNA double-strand break 94.6 0.022 7.5E-07 42.9 3.1 20 54-73 25-44 (203)
451 1hqc_A RUVB; extended AAA-ATPa 94.6 0.12 4.1E-06 41.3 7.7 22 53-74 39-60 (324)
452 2yl4_A ATP-binding cassette SU 94.5 0.016 5.4E-07 51.1 2.5 24 53-76 371-394 (595)
453 4b4t_K 26S protease regulatory 94.5 0.022 7.5E-07 48.1 3.3 24 52-75 206-229 (428)
454 3bk7_A ABC transporter ATP-bin 94.5 0.022 7.6E-07 50.3 3.4 25 54-78 384-408 (607)
455 2dr3_A UPF0273 protein PH0284; 94.5 0.021 7.3E-07 43.7 3.0 23 52-74 23-45 (247)
456 1ofh_A ATP-dependent HSL prote 94.5 0.022 7.5E-07 45.3 3.1 24 52-75 50-73 (310)
457 3ozx_A RNAse L inhibitor; ATP 94.5 0.023 7.8E-07 49.5 3.3 23 54-76 296-318 (538)
458 2qby_A CDC6 homolog 1, cell di 94.4 0.019 6.7E-07 46.9 2.7 24 52-75 45-68 (386)
459 4b4t_L 26S protease subunit RP 94.4 0.024 8.3E-07 48.0 3.3 25 51-75 214-238 (437)
460 1fnn_A CDC6P, cell division co 94.4 0.023 7.8E-07 46.7 3.1 23 54-76 46-68 (389)
461 3qf4_B Uncharacterized ABC tra 94.4 0.023 7.9E-07 50.1 3.3 25 52-76 381-405 (598)
462 4fcw_A Chaperone protein CLPB; 94.4 0.027 9.1E-07 44.9 3.4 23 53-75 48-70 (311)
463 3exa_A TRNA delta(2)-isopenten 94.4 0.026 9E-07 45.6 3.3 24 53-76 4-27 (322)
464 3eie_A Vacuolar protein sortin 94.4 0.027 9.2E-07 45.5 3.4 24 52-75 51-74 (322)
465 4a82_A Cystic fibrosis transme 94.3 0.02 6.7E-07 50.3 2.7 25 52-76 367-391 (578)
466 2qmh_A HPR kinase/phosphorylas 94.3 0.027 9.3E-07 42.4 3.0 26 51-76 33-58 (205)
467 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.028 9.6E-07 45.5 3.4 24 52-75 45-68 (322)
468 1sxj_E Activator 1 40 kDa subu 94.3 0.018 6.3E-07 46.8 2.3 21 54-74 38-58 (354)
469 4b4t_J 26S protease regulatory 94.3 0.023 7.8E-07 47.5 2.8 24 52-75 182-205 (405)
470 3zvl_A Bifunctional polynucleo 94.2 0.027 9.1E-07 47.4 3.1 24 52-75 258-281 (416)
471 1sxj_C Activator 1 40 kDa subu 94.2 0.024 8.2E-07 46.1 2.7 22 54-75 48-69 (340)
472 2px0_A Flagellar biosynthesis 94.2 0.026 9.1E-07 45.2 2.9 113 52-171 105-254 (296)
473 3qf4_A ABC transporter, ATP-bi 94.1 0.02 7E-07 50.3 2.4 24 53-76 370-393 (587)
474 1pzn_A RAD51, DNA repair and r 94.1 0.026 9.1E-07 46.3 2.9 27 50-76 129-155 (349)
475 3j16_B RLI1P; ribosome recycli 94.0 0.029 1E-06 49.5 3.2 24 55-78 381-404 (608)
476 1p5z_B DCK, deoxycytidine kina 94.0 0.023 8E-07 44.4 2.3 25 51-75 23-47 (263)
477 3crm_A TRNA delta(2)-isopenten 94.0 0.035 1.2E-06 45.0 3.3 22 54-75 7-28 (323)
478 3d3q_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 45.6 3.0 23 53-75 8-30 (340)
479 1vma_A Cell division protein F 94.0 0.03 1E-06 45.1 2.9 23 52-74 104-126 (306)
480 2qgz_A Helicase loader, putati 94.0 0.035 1.2E-06 44.7 3.3 24 52-75 152-175 (308)
481 3a8t_A Adenylate isopentenyltr 93.9 0.036 1.2E-06 45.3 3.2 24 53-76 41-64 (339)
482 1sxj_D Activator 1 41 kDa subu 93.9 0.03 1E-06 45.4 2.8 23 53-75 59-81 (353)
483 2bjv_A PSP operon transcriptio 93.9 0.035 1.2E-06 43.4 3.1 24 53-76 30-53 (265)
484 3qkt_A DNA double-strand break 93.9 0.034 1.1E-06 45.4 3.1 19 55-73 26-44 (339)
485 3uk6_A RUVB-like 2; hexameric 93.9 0.034 1.2E-06 45.5 3.1 23 53-75 71-93 (368)
486 2r62_A Cell division protease 93.9 0.015 5E-07 45.6 0.8 22 54-75 46-67 (268)
487 1um8_A ATP-dependent CLP prote 93.9 0.036 1.2E-06 45.7 3.3 24 52-75 72-95 (376)
488 4b4t_I 26S protease regulatory 93.8 0.032 1.1E-06 47.0 2.8 24 52-75 216-239 (437)
489 3hws_A ATP-dependent CLP prote 93.8 0.038 1.3E-06 45.3 3.3 24 52-75 51-74 (363)
490 2v1u_A Cell division control p 93.8 0.032 1.1E-06 45.7 2.8 25 51-75 43-67 (387)
491 2qp9_X Vacuolar protein sortin 93.8 0.035 1.2E-06 45.6 3.0 24 52-75 84-107 (355)
492 2qen_A Walker-type ATPase; unk 93.8 0.037 1.3E-06 44.6 3.1 23 53-75 32-54 (350)
493 1c9k_A COBU, adenosylcobinamid 93.8 0.043 1.5E-06 40.6 3.1 21 55-75 2-22 (180)
494 1a7j_A Phosphoribulokinase; tr 93.7 0.022 7.6E-07 45.5 1.7 23 52-74 5-27 (290)
495 3d8b_A Fidgetin-like protein 1 93.7 0.043 1.5E-06 45.0 3.5 25 51-75 116-140 (357)
496 4edh_A DTMP kinase, thymidylat 93.7 0.046 1.6E-06 41.6 3.3 25 50-74 4-28 (213)
497 2ocp_A DGK, deoxyguanosine kin 93.7 0.044 1.5E-06 42.2 3.3 23 53-75 3-25 (241)
498 3pxg_A Negative regulator of g 93.6 0.039 1.3E-06 47.1 3.2 25 51-75 200-224 (468)
499 1e69_A Chromosome segregation 93.6 0.03 1E-06 45.3 2.3 20 54-73 26-45 (322)
500 1tf7_A KAIC; homohexamer, hexa 93.6 0.036 1.2E-06 48.1 2.9 19 55-73 42-60 (525)
No 1
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.1e-30 Score=197.55 Aligned_cols=165 Identities=32% Similarity=0.568 Sum_probs=138.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
....++|+++|++|+|||||++++.++.+.. .+.+|.+.....+...+..+.+|||||++++...+..+++.+|++++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 3467999999999999999999999988876 67788998888888889999999999999999998889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........ +++++|||++|.|+ +
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~SA~~g~gv-~ 173 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDRE--ICCYSISCKEKDNI-D 173 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC--EEEEECCTTTCTTH-H
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCC--eeEEEEECCCCCCH-H
Confidence 99999999999999999998775434689999999999998876777777776654333333 38999999999999 4
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
++...+.+.+
T Consensus 174 ~l~~~l~~~~ 183 (188)
T 1zd9_A 174 ITLQWLIQHS 183 (188)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=2e-31 Score=207.74 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=120.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++|+..+.|.. .+.||++..+ ..+..+ .+.+.+|||+|+++++.++..+++.+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~--~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCC--CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 467899999999999999999999999988 7788887543 344443 3789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|||++++++|+++..|+..+..... .+.|++||+||+|+.+. ...++..+..+. ++++|++|||++|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-------~~~~~~e~SAktg 160 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE-------LNVMFIETSAKAG 160 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEEBTTTT
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHH-------hCCeeEEEeCCCC
Confidence 9999999999999999999999876543 57899999999999764 445554444321 2238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.||++.|...+..
T Consensus 161 ~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 161 YNVKQLFRRVAAA 173 (216)
T ss_dssp BSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9997777655544
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=5.4e-30 Score=190.41 Aligned_cols=160 Identities=33% Similarity=0.560 Sum_probs=134.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++|+|||||++++.++.+.. +.||.++....+..++..+.+|||||+++++..+..+++++|++++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC---CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc---ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 489999999999999999999888654 46788888888888889999999999999999998899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+++ +..
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~-l~~ 154 (164)
T 1r8s_A 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW--YIQATCATSGDGLYE-GLD 154 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE--EEEECBTTTTBTHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccE--EEEEcccCCCcCHHH-HHH
Confidence 99999999999999887764446899999999999988777777777776544433444 899999999999944 444
Q ss_pred HHHHHH
Q psy12173 213 EAEQAM 218 (224)
Q Consensus 213 ~i~~~l 218 (224)
.+.+.+
T Consensus 155 ~l~~~i 160 (164)
T 1r8s_A 155 WLSNQL 160 (164)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
No 4
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=197.59 Aligned_cols=167 Identities=31% Similarity=0.530 Sum_probs=138.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
...++|+++|++|+|||||++++.+.. +.. .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS--SCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC--CcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999887 455 56788898888888888999999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCC--CCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRL--STVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....++..+...... .+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi 174 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPW--HICASDAIKGEGL 174 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE--EEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCce--EEEEccCCCCcCH
Confidence 99999999999999999998876544 5799999999999988777788877776444333344 8999999999999
Q ss_pred ccchHHHHHHHHHHh
Q psy12173 207 LHVSVVEAEQAMYAL 221 (224)
Q Consensus 207 ~~~~~~~i~~~l~~~ 221 (224)
+++...+.+.+.++
T Consensus 175 -~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 175 -QEGVDWLQDQIQTV 188 (190)
T ss_dssp -HHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHh
Confidence 56666666665544
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=9.9e-30 Score=193.09 Aligned_cols=162 Identities=38% Similarity=0.640 Sum_probs=136.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++. .. .+.+|.++....+..++..+.+|||||++++...+..+++.+|++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~--~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD--TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS--SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC--cccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45899999999999999999999888 54 6778889888888889999999999999999999899999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW--RIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCce--EEEEeeCCCCCCHHHHH
Confidence 9999999999999999887764446799999999999988877777777776543333344 89999999999995444
Q ss_pred HHHHHHHH
Q psy12173 211 VVEAEQAM 218 (224)
Q Consensus 211 ~~~i~~~l 218 (224)
..+.+.+
T Consensus 172 -~~l~~~i 178 (186)
T 1ksh_A 172 -DWLLDDI 178 (186)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4444443
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.5e-29 Score=189.09 Aligned_cols=163 Identities=28% Similarity=0.552 Sum_probs=137.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+. .+.+|.++....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV---TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4689999999999999999999988864 3567888888888889999999999999999998889999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ +++++||++|.|+ +++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 159 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW--QIFKTSATKGTGL-DEA 159 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE--EEEECCTTTCTTH-HHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce--EEEECcCCCCcCH-HHH
Confidence 9999999999999999887764446899999999999988877777777776544444444 8999999999999 445
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 160 ~~~l~~~i~ 168 (171)
T 1upt_A 160 MEWLVETLK 168 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=6.9e-30 Score=193.68 Aligned_cols=161 Identities=39% Similarity=0.669 Sum_probs=134.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+. .+.+|.++....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 4689999999999999999999988643 4567888888888888999999999999999999989999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.|
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW--QIQSCSALTGEGVQDGM 169 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCce--EEEEccCCCCCCHHHHH
Confidence 9999999999999998887654446799999999999988777777777776544333444 89999999999995544
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
. .+.+.
T Consensus 170 ~-~l~~~ 175 (181)
T 1fzq_A 170 N-WVCKN 175 (181)
T ss_dssp H-HHHHT
T ss_pred H-HHHHH
Confidence 4 44433
No 8
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.3e-30 Score=193.60 Aligned_cols=163 Identities=31% Similarity=0.494 Sum_probs=132.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+. .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 91 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 3579999999999999999999988765 3467888888888888999999999999999888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+ +++
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gi-~~l 168 (187)
T 1zj6_A 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGL-CQG 168 (187)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE--EEEECBTTTTBTH-HHH
T ss_pred eCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc--EEEEccCCCCcCH-HHH
Confidence 9999999999999999988764345899999999999988777777777776543333344 8999999999999 445
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 169 ~~~l~~~~~ 177 (187)
T 1zj6_A 169 LEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555443
No 9
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.8e-30 Score=193.46 Aligned_cols=157 Identities=32% Similarity=0.518 Sum_probs=133.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.+.++|+++|++|+|||||++++.++.+ . .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-V--HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-E--EEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-C--ccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4678999999999999999999999987 3 567788888888888899999999999999999888999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGLCQG 173 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce--EEEEccCCCCcCHHHH
Confidence 99999999999999999988754346899999999999988777888888776544433444 8999999999999544
Q ss_pred hH
Q psy12173 210 SV 211 (224)
Q Consensus 210 ~~ 211 (224)
+.
T Consensus 174 ~~ 175 (181)
T 2h17_A 174 LE 175 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=9.7e-30 Score=194.92 Aligned_cols=169 Identities=29% Similarity=0.528 Sum_probs=135.2
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.......+|+++|++|+|||||++++.+..+... .+.+|.++....+...+..+.+|||||++++...+..+++.+|++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-ccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 3445788999999999999999999999886541 246788888888888899999999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCC-------CCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEe
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRL-------STVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIAT 198 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 198 (224)
|+|+|+++++++.....|+..+...... .++|+++|+||+|+.+....+++.+.+..... .... +++++|
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 168 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP--FVIFAS 168 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC--EEEEEC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe--eEEEEe
Confidence 9999999999999999999988765211 27899999999999988777888777764433 2233 499999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+++.|. .+.+.+.
T Consensus 169 Sa~~g~gv~~l~~-~l~~~~~ 188 (199)
T 4bas_A 169 NGLKGTGVHEGFS-WLQETAS 188 (199)
T ss_dssp BTTTTBTHHHHHH-HHHHHHH
T ss_pred eCCCccCHHHHHH-HHHHHHH
Confidence 9999999955554 4444443
No 11
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=191.56 Aligned_cols=164 Identities=37% Similarity=0.617 Sum_probs=134.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+ . .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-V--TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 93 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-E--EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-C--ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 468999999999999999999998876 3 5678888888888888899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+ +++
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 170 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSW--SIVASSAIKGEGI-TEG 170 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCE--EEEEEBGGGTBTH-HHH
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEEccCCCCcCH-HHH
Confidence 9999999999999999988765456899999999999988777788888776544433444 8999999999999 555
Q ss_pred HHHHHHHHHH
Q psy12173 211 VVEAEQAMYA 220 (224)
Q Consensus 211 ~~~i~~~l~~ 220 (224)
...+.+.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-29 Score=191.53 Aligned_cols=163 Identities=33% Similarity=0.563 Sum_probs=137.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|++|+|||||++++..+.+.. +.||.++....+..++..+.+|||||++++...+..+++.+|++++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 46899999999999999999999887653 467888888888889999999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+ +++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 174 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW--TIVKSSSKTGDGL-VEG 174 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTH-HHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce--EEEEccCCCccCH-HHH
Confidence 9999999999999999988765556899999999999988777778877776544444444 8999999999999 555
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 175 ~~~l~~~i~ 183 (189)
T 2x77_A 175 MDWLVERLR 183 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 13
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.6e-29 Score=193.42 Aligned_cols=162 Identities=32% Similarity=0.521 Sum_probs=131.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++..+.+.. +.||.++....+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999999888653 46788888888888899999999999999988888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+++.
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTW--YVQATCATQGTGLYDG 181 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE--EEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEECcCCCcCCHHHH
Confidence 99999999999999999987764446899999999999988777788887776544433444 8999999999999544
Q ss_pred hHHHHHHH
Q psy12173 210 SVVEAEQA 217 (224)
Q Consensus 210 ~~~~i~~~ 217 (224)
+ ..+.+.
T Consensus 182 ~-~~l~~~ 188 (192)
T 2b6h_A 182 L-DWLSHE 188 (192)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHH
Confidence 4 444443
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=7.4e-29 Score=189.43 Aligned_cols=158 Identities=32% Similarity=0.534 Sum_probs=131.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.++.+. .+.+|.+.....+.+++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 4579999999999999999999998864 4567888888888888999999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-----CcccceeEEEeecCCCCc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-----SRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 205 (224)
|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.++..... .....+++++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 999999999999999998775444689999999999998877788888776543200 112335899999999999
Q ss_pred cccchH
Q psy12173 206 HLHVSV 211 (224)
Q Consensus 206 v~~~~~ 211 (224)
+++.+.
T Consensus 179 i~~l~~ 184 (190)
T 1m2o_B 179 YLEAFQ 184 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 955444
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=4.7e-29 Score=191.79 Aligned_cols=158 Identities=28% Similarity=0.444 Sum_probs=123.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.++.+. .+.+|.+.....+.+++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 4579999999999999999999998864 3567888777888888899999999999999988888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc---------ccC-cccceeEEEeec
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS---------ISS-RQHRIKLIATQA 200 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~Sa 200 (224)
|+++++++.+...|+..+.......++|+++|+||+|+.+....+++.+.++... ... ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999987754446899999999999988777788877765332 110 113348999999
Q ss_pred CCCCccccchH
Q psy12173 201 PSNLHHLHVSV 211 (224)
Q Consensus 201 ~~~~gv~~~~~ 211 (224)
++|.|+++.|.
T Consensus 181 ~~g~gv~~l~~ 191 (198)
T 1f6b_A 181 LKRQGYGEGFR 191 (198)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 99999944443
No 16
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=6.2e-28 Score=183.46 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=123.7
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...+..+||+++|++|+|||||++++..+.+.. .+.+|.+.....+.+++ ..+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 445678999999999999999999999999877 56667555555666665 677889999999887 577899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+ ....++..+..+.. . .++|++|||
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~--~~~~~e~Sa 161 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----K--RCTYYETCA 161 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----T--TCEEEEEBT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----C--CCeEEEecC
Confidence 9999999999999999999999887765445789999999999942 24444444443211 1 138999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+..++.
T Consensus 162 ~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999996666655555444
No 17
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=8.5e-28 Score=185.13 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=121.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..++|+++|++|+|||||++++....+.. .+.+|.+ +....+.+++ ..+.+|||||++++...+..+++.+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34567999999999999999999999998776 5566655 4455566655 6899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccce-eEEEeec
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRI-KLIATQA 200 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 200 (224)
|++|+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .++ ++++|||
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~~SA 174 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-------YDILCAIETSA 174 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCSEEEECBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-------cCCCEEEEEeC
Confidence 99999999999999999888888877653 257899999999999753 445555444321 123 7999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+.....
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999996655554444443
No 18
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.3e-27 Score=184.28 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=127.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..++|+++|++|+|||||++++..+.+.. .+.+|.+. ....+..++ ..+.+|||||++++...+..+++.+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567999999999999999999999998877 55666664 344555555 6899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... . ++++++|||+
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~ 171 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA-----Q--DMYYLETSAK 171 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----H--TCCEEECCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCEEEEEeCC
Confidence 99999999999999988888888776643 257899999999999643 334444333211 1 2389999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+|.|+++.|...+...+.+
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999966666555555443
No 19
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=199.41 Aligned_cols=164 Identities=32% Similarity=0.530 Sum_probs=135.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++.+..+.. . .+|.+.....+..++..+.+|||||++.+...+..+++.+|++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--E-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC--c-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456799999999999999999999988654 3 4788888888888999999999999999998888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+ ++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~vSAk~g~gi-~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW--YIQATCATSGDGL-YE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCE--EEEECBTTTTBTH-HH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCC--EEEEEECCCCcCH-HH
Confidence 99999999999999999988765556899999999999998888888888887655544444 9999999999999 44
Q ss_pred hHHHHHHHHH
Q psy12173 210 SVVEAEQAMY 219 (224)
Q Consensus 210 ~~~~i~~~l~ 219 (224)
+...+.+.+.
T Consensus 317 l~~~l~~~l~ 326 (329)
T 3o47_A 317 GLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4445555443
No 20
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=2.7e-27 Score=179.42 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=126.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+. ....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 467899999999999999999999998877 55566653 344455555 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . ++++++|||++|
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 157 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQE-----N--ELMFLETSALTG 157 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEecCCCC
Confidence 9999999999999888888877766432 57899999999999643 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+...+.+
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 158 ENVEEAFVQCARKILNK 174 (186)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99966666555555543
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=2.9e-27 Score=179.96 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=126.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE---EEEeC-----------CeEEEEEEcCCchhHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT---ILQKG-----------EYTLNIFELGGQENVRRF 115 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~l~D~~G~~~~~~~ 115 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS--KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc--CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 467899999999999999999999988776 56677775544 34443 468999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccce
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
+..+++.+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. .++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~ 159 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-------YGI 159 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-------cCC
Confidence 99999999999999999999999988888888877654468999999999999753 334444443321 123
Q ss_pred eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+++++||++|.|+++.+...+.....
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999995555544444433
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=180.59 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 467899999999999999999999998877 5555555 4445566655 689999999999999988899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||++|
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-------LGIPFLETSAKNA 163 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCCEEEECTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHHH-------cCCcEEEEeCCCC
Confidence 9999999999999998888888766532 57899999999999765 233333332221 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.|...+.....
T Consensus 164 ~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9996555544444433
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=1.4e-27 Score=180.62 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=124.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..+.+||+++|++|+|||||++++..+.+.. .+.++++... .....++ ..+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3567999999999999999999999988777 6667766443 3344444 567779999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC-C
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP-S 202 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~ 202 (224)
+++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+.. +++++++||+ +
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-------NIPYIETSAKDP 165 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-------TCCEEEEBCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-------CCeEEEeccCCC
Confidence 9999999999999999999888876544468999999999999763 4444444433211 2389999999 9
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+++.|. .+.+.+
T Consensus 166 ~~~v~~l~~-~l~~~i 180 (183)
T 3kkq_A 166 PLNVDKTFH-DLVRVI 180 (183)
T ss_dssp CBSHHHHHH-HHHHHH
T ss_pred CCCHHHHHH-HHHHHH
Confidence 999955554 454444
No 24
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.3e-27 Score=177.78 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.+..+.. ..++.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP---EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------CEEEEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC---CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 5799999999999999999999776543 223333222 233333 4688999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+.......++|+++|+||+|+.+. ...++....... .+++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-------FDCKFIETSAALHHNV 151 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-------TTCEEEECBGGGTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH-------hCCcEEEeccCCCCCH
Confidence 9999999999999999999887655568999999999999754 333333332211 1238999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+ ..+.+.+.
T Consensus 152 ~~l~-~~l~~~~~ 163 (166)
T 3q72_A 152 QALF-EGVVRQIR 163 (166)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 5554 45544443
No 25
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-28 Score=184.59 Aligned_cols=165 Identities=14% Similarity=0.219 Sum_probs=126.7
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhcc
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQK--GEYTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
....+..+||+++|++|+|||||++++.+..+.. .+.++.+ +....+.. ....+.+|||||++.+...+..+++
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP--AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR 94 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCC--CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCc--ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence 3445678999999999999999999999988776 4444444 44444444 4589999999999999999999999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
.+|++++|+|++++++++....|+..+.... ..+.|+++|+||+|+.+. ...++.....+. .+++++++|
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S 166 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ-------LGFDFFEAS 166 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECB
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-------cCCeEEEEE
Confidence 9999999999999999998888888876643 357999999999999653 333333333221 123899999
Q ss_pred cCCCCccccchHHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~ 220 (224)
|++|.|+++.|...+...+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999966665555544443
No 26
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=2e-27 Score=181.34 Aligned_cols=164 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.....+||+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 33567999999999999999999999998776 4444444 4555566654 6899999999999988888889999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||+
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~ 166 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFARE-------HGLIFMETSAK 166 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccccCHHHHHHHHHH-------cCCEEEEEeCC
Confidence 999999999999999988888888876532 57899999999999653 334444433321 12389999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|.|+++.|...+...+.+.
T Consensus 167 ~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999666666555555443
No 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=179.55 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 467899999999999999999999998776 4555555 4455566666 789999999999998888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... .+.|+++|+||+|+.+. ....+....... .+++++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-------MGIQLFETSAKEN 155 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-------cCCeEEEEECCCC
Confidence 999999999999999988888887653 57999999999998754 233333332221 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|++ ++...+.+.+.
T Consensus 156 ~gi~-~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVE-EMFNCITELVL 170 (181)
T ss_dssp BSHH-HHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHH
Confidence 9994 44445555444
No 28
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=4.6e-28 Score=183.27 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=97.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.++|+++|++|+|||||++++.+..+.. .+.+|++ +....+.+++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS--TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 467899999999999999999999888766 5556665 3444556655 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLALD-------YGIKFMETSAKAN 155 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-------HTCEEEECCC---
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCcCCHHHHHHHHHH-------cCCeEEEEeCCCC
Confidence 9999999999999999888888776532 57899999999999764 334444443321 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.+...+.....
T Consensus 156 ~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 156 INVENAFFTLARDIKA 171 (183)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9996665555544443
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=182.12 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=119.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHH-HHHhhccCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRR-FWNTYFEDT 123 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~ 123 (224)
......++|+++|++|+|||||++++.+..+........+.++....+.+++ ..+.+|||+|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3345679999999999999999999986543331122233344455555554 6788999999988765 667778999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++|+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+..+. . ++++++|||+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~--~~~~~e~Sa~ 170 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----L--SCKHIETSAA 170 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCEEEEEBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----h--CCEEEEEcCC
Confidence 999999999999999999999988876543357999999999999754 344444433321 1 2389999999
Q ss_pred CCCccccchHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQA 217 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~ 217 (224)
+|.|+++.|...+...
T Consensus 171 ~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999966665555444
No 30
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.3e-27 Score=177.78 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=122.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.++|+++|++|+|||||++++.++.+.. .+.+|.+..... +..+ ...+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 45899999999999999999999988776 666776644432 3333 478999999999999888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..+..+.. . +++++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~--~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----C--NCAFLESSAKSKIN 153 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----T--SCEEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----c--CCcEEEecCCCCCC
Confidence 99999999999988888888776544468999999999999654 3344444333210 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+ +++...+.+.+
T Consensus 154 i-~~l~~~l~~~i 165 (167)
T 1c1y_A 154 V-NEIFYDLVRQI 165 (167)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH
Confidence 9 44444554443
No 31
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=1.1e-27 Score=186.17 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=124.6
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC------------CeEEEEEEcCCchh
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG------------EYTLNIFELGGQEN 111 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~------------~~~~~l~D~~G~~~ 111 (224)
....++.++|+++|++|+|||||+++|.+..+.. .+.+|.+... ..+.++ ...+.+|||||+++
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 96 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCC--EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCc--CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence 3444678999999999999999999999988766 5556655333 334333 57899999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 189 (224)
+...+..+++.+|++|+|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+.
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~------ 170 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK------ 170 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH------
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH------
Confidence 999999999999999999999999999888888777655443367999999999999753 334444433321
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.++++++|||++|.|+++.+...+...+.
T Consensus 171 -~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 -YGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp -TTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 12389999999999996555544444443
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=1e-26 Score=178.81 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=124.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+... ..+... ...+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS--CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 457899999999999999999999998877 5566666443 344444 4789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-------LGFEFFEASAKDN 155 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-------HTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-------CCCeEEEEECCCC
Confidence 999999999999998888888876643 257899999999999764 333443333321 1238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+.....+
T Consensus 156 ~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 156 INVKQTFERLVDVICEK 172 (203)
T ss_dssp BSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99966555544444443
No 33
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.4e-27 Score=205.04 Aligned_cols=164 Identities=30% Similarity=0.525 Sum_probs=141.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+..++|+++|.+|+|||||+++|.+..+. .+.+|.++....+.+++..+.+|||||++.++..+..+++.+|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~---~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 46799999999999999999999998854 356799999999999999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+ ++
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~SA~~g~gi-~~ 473 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW--YVQPSCATSGDGL-YE 473 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCE--EEEECBTTTTBTH-HH
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCe--EEEEEECCCCCCH-HH
Confidence 99999999999999999998765556899999999999998878888888877655444454 8999999999999 55
Q ss_pred hHHHHHHHHH
Q psy12173 210 SVVEAEQAMY 219 (224)
Q Consensus 210 ~~~~i~~~l~ 219 (224)
+.+.+.+.+.
T Consensus 474 l~~~l~~~~~ 483 (497)
T 3lvq_E 474 GLTWLTSNYK 483 (497)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 5556655544
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=1.2e-27 Score=180.74 Aligned_cols=159 Identities=25% Similarity=0.280 Sum_probs=123.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++..+.+.. .+.+|.+.... .+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 457899999999999999999999888777 66777775543 344455 6789999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.......++|+++|+||+|+.+. ...++..+..+. .+++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 154 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-------WNAAFLESSAKENQ 154 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCEEEECCTTSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-------hCCcEEEEecCCCC
Confidence 999999999999999999988877655568999999999999654 334444443322 12389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+..+
T Consensus 155 ~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 155 TAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9955555444433
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=2.6e-27 Score=176.73 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=111.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHH-HHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRR-FWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.+..+.......++.+.....+..++ ..+.+|||||++++.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776653344455555566666654 6788999999998876 66667889999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----L--SCKHIETSAALHHNT 154 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTTBSH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----c--CCcEEEecCccCCCH
Confidence 9999999999999999999888755458999999999999743 444444433321 1 238999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
++.|...+...
T Consensus 155 ~~l~~~l~~~i 165 (169)
T 3q85_A 155 RELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=1e-27 Score=186.55 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=122.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
..+..+||+++|++|+|||||++++.++.+.. .+.+|++..... +.. ....+.+|||+|++++...+..+++.+|
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 33567999999999999999999999999877 777787755442 223 3478999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++|+|+|+++++++.. ...|+..+.... .+.|+++|+||+|+.++ ...++..+..+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 171 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK------- 171 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-------
Confidence 9999999999999998 577777766553 58999999999999653 33333333322
Q ss_pred ccce-eEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 190 QHRI-KLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~-~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
..++ +|++|||++|.| +++.|...+..++
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 1234 899999999998 9665555544443
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=180.66 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=126.1
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEe--CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQK--GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
......++|+++|++|+|||||+++|.+..+.. .+.++.+... ..+.. ....+.+|||||++++...+..+++.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH--DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCS--SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 344678999999999999999999999998877 5566666443 33444 34789999999999998888889999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++....... . +++++++||
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa 169 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----N--GLLFLETSA 169 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEECT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHH-----c--CCEEEEEeC
Confidence 999999999999988888888888876643 257899999999999753 334444433321 1 238999999
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~ 220 (224)
++|.|+++.+...+...+.+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999966555555544444
No 38
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=3.4e-27 Score=179.65 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=125.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+..++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+... ...+.+|||||++++...+..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 4567999999999999999999999998776 555665543 3444443 468999999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .+++++++||++
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADD-------LGFEFFEASAKE 168 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHH-------cCCeEEEEECCC
Confidence 9999999999989988888888876653 257899999999999653 333444333321 123899999999
Q ss_pred CCccccchHHHHHHHHHHh
Q psy12173 203 NLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~~ 221 (224)
|.|+++.+...+.....++
T Consensus 169 g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 169 NINVKQVFERLVDVICEKM 187 (189)
T ss_dssp TBSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999666655555554444
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=2.8e-27 Score=175.79 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=121.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCC--CCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 356899999999999999999999988766 56666664443 344444 6899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-------WNVNYVETSAKTRA 152 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTCEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCCC
Confidence 999999999999999888888877654458999999999999653 344444444321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 153 gi~~l~~-~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFF-DLMREI 165 (168)
T ss_dssp THHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9955544 444443
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=1.1e-26 Score=174.50 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=122.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 457899999999999999999999988776 566676644 34455555 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+. ...++..+.... ... ++++++||+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~~Sa~ 156 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGD--YPYFETSAK 156 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTC--CCEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCC--ceEEEEeCC
Confidence 9999999999888888888777765321 257899999999999743 445555444431 112 389999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+...+...+
T Consensus 157 ~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999655554444433
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.1e-27 Score=178.59 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=124.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..+ ...+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 457899999999999999999999998877 566666543 3444554 4789999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... . +++++++||++|.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----H--SMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----T--TCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----c--CCEEEEecCCCCC
Confidence 9999999999999988888888876644467999999999999653 334444333321 1 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++. ...+.+.+.
T Consensus 164 gi~~l-~~~l~~~~~ 177 (195)
T 1x3s_A 164 GVQCA-FEELVEKII 177 (195)
T ss_dssp THHHH-HHHHHHHHH
T ss_pred CHHHH-HHHHHHHHH
Confidence 99544 445554444
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=9e-28 Score=184.79 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=121.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
+.....++|+++|++|+|||||++++.+..+.. .+.+|.+..... +.. ....+.+|||||++.+...+..+++.+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 344578999999999999999999999998876 666777644422 222 458899999999999988888899999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ....+..+... ..+++++++||+
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~ 169 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-------SWGATFMESSAR 169 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEECCTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-------HhCCeEEEEeCC
Confidence 999999999999999999999998887655567999999999999653 33333333322 112389999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+++.|. .+.+.+.
T Consensus 170 ~~~~v~~l~~-~l~~~i~ 186 (201)
T 3oes_A 170 ENQLTQGIFT-KVIQEIA 186 (201)
T ss_dssp CHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHH-HHHHHHH
Confidence 9999955444 5544444
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=7.5e-27 Score=175.51 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=122.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+. ....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 467999999999999999999999998776 55566553 344445543 689999999999999999899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 162 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAEE-------NGLLFLEASAKTG 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCC
Confidence 9999999999999888888887766532 57899999999999643 334454444321 1238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++.+...+..
T Consensus 163 ~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 163 ENVEDAFLEAAKK 175 (179)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9995555444433
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=178.45 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=126.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 467899999999999999999999988766 6666666443 3445554 5899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-------hCCeEEEEeCCCCC
Confidence 999999999999999999888887654468999999999999753 344454444321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+...+..+.
T Consensus 163 gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 163 NVDKVFFDLMREIR 176 (206)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99655554444433
No 45
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=4.3e-27 Score=174.62 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=123.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45899999999999999999999988776 555665533 33445554 56999999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++....++..+.......+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-------WGCPFMETSAKSKTM 152 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTSCEEEECTTCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-------hCCCEEEecCCCCcC
Confidence 99999999999999999888887655568999999999998643 333333333211 123899999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+ +++...+.+.+.
T Consensus 153 i-~~l~~~l~~~~~ 165 (167)
T 1kao_A 153 V-DELFAEIVRQMN 165 (167)
T ss_dssp H-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh
Confidence 9 455555555443
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-26 Score=177.48 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=123.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC----------------------------
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE---------------------------- 98 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~---------------------------- 98 (224)
.++.++|+++|++|+|||||+++|.+..+.. .+.+|++... ..+..++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 3567899999999999999999999998876 6667766433 3344433
Q ss_pred -----------eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 99 -----------YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 99 -----------~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC
Confidence 789999999999999888889999999999999999999999888888887753 499999999999
Q ss_pred CCC-CCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 168 VPG-ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 168 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+.. ....++..+.++. . +++++++||++|.|+++.+...+....
T Consensus 159 ~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQD-----N--NLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CC-CCSCHHHHHHHHHH-----T--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHH-----c--CCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 432 2445555554432 1 238999999999999555554444443
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=7.2e-27 Score=177.87 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=120.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHH-HHHHhhccC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVR-RFWNTYFED 122 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~ 122 (224)
..+..++|+++|++|+|||||++++.++.+.. .+.++.+ +....+..++ ..+.+|||||++++. ..+..+++.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS--SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 33567999999999999999999999988777 4555555 4445565654 689999999999998 788888999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+|++|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... .+++++++||
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa 166 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-------HSMPLFETSA 166 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCCEEECCS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH-------cCCEEEEEeC
Confidence 9999999999999999999899888877654468999999999999653 334443333221 1238999999
Q ss_pred CCC---CccccchHH
Q psy12173 201 PSN---LHHLHVSVV 212 (224)
Q Consensus 201 ~~~---~gv~~~~~~ 212 (224)
++| .|+++.|..
T Consensus 167 ~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 167 KNPNDNDHVEAIFMT 181 (189)
T ss_dssp SSGGGGSCHHHHHHH
T ss_pred CcCCcccCHHHHHHH
Confidence 999 888444443
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=181.88 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=118.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+..++|+++|++|+|||||++++.++.+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ--DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc--cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3578999999999999999999999988776 4555554 4455555655 78999999999998888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ....+..+..+. . ++++++|||++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~SA~~ 171 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQE-----N--ELMFLETSALT 171 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEECTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHHH-----c--CCEEEEEeCCC
Confidence 99999999999999988888888766533 57999999999999643 334444433321 1 23899999999
Q ss_pred CCccccchHHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~ 220 (224)
|.|+++.+...+...+.+
T Consensus 172 g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 172 GENVEEAFLKCARTILNK 189 (200)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999966666555555443
No 49
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=4.4e-27 Score=175.21 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=121.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..+ +..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE--FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 457899999999999999999999988776 555666543 3344444 4789999999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 153 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYADD-----N--SLLFMETSAKTS 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 9999999999999999888888876532 57899999999998653 334444443321 1 238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|++ ++...+.+
T Consensus 154 ~gi~-~l~~~i~~ 165 (170)
T 1r2q_A 154 MNVN-EIFMAIAK 165 (170)
T ss_dssp TTHH-HHHHHHHH
T ss_pred CCHH-HHHHHHHH
Confidence 9994 44444433
No 50
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=179.35 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=117.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 567899999999999999999999988776 4555555 4445555554 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. ..++++++|||++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~~SA~~g 174 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ------ITGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT------STTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh------cCCCeEEEEeCCCC
Confidence 999999999999988888777665542 257999999999999653 334444333321 11238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.+...+...+
T Consensus 175 ~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 175 FNVDEIFLKLVDDIL 189 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999665555444443
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=1.1e-26 Score=175.06 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=123.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+... ...+.+|||||++++...+..+++.+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT--TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 457899999999999999999999998777 4455555 444445554 3689999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 159 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----N--GLFFMETSAKTA 159 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHHHH-----c--CCEEEEEECCCC
Confidence 9999999999999999888888877532 57899999999999654 344555444321 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+ +++...+.+.+
T Consensus 160 ~gi-~~l~~~l~~~~ 173 (181)
T 2efe_B 160 TNV-KEIFYEIARRL 173 (181)
T ss_dssp TTH-HHHHHHHHHTC
T ss_pred CCH-HHHHHHHHHHH
Confidence 999 44444554443
No 52
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=3.2e-27 Score=181.90 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=92.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCc--eeEEEEEeC----CeEEEEEEcCCchhHHHHHHhhcc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEG--FNITILQKG----EYTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~--~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
...++|+++|++|+|||||++++.+. .+.. .+.+|++ +....+.++ ...+.+|||||++.+...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK--DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC--CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 46789999999999999999999998 6665 5666765 455556665 568999999999999999999999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCC---CCCHHHHHhhcCcccccCcccceeEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPG---ALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
.+|++|+|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+ ....++..+..+. . +++++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~--~~~~~ 168 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----N--TLDFF 168 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----T--TCEEE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----c--CCEEE
Confidence 99999999999999999999988888877543 25789999999999976 2344454444321 1 13899
Q ss_pred EeecCC-CCccccchHHHHHHHH
Q psy12173 197 ATQAPS-NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~-~~gv~~~~~~~i~~~l 218 (224)
+|||++ |.|+++.+...+....
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ECCC-------CHHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHHH
Confidence 999999 9999665554444443
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.2e-27 Score=178.47 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=124.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+.... .+.. ....+.+|||||++++...+..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 467999999999999999999999998776 56677765433 3333 45789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+ ....++..+..+. . +++++++||++|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----I--GAIVVETSAKNA 170 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----T--TCEEEECBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999999988888876653 25789999999999974 3345555544421 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|++ ++...+.+.+
T Consensus 171 ~gi~-~l~~~l~~~i 184 (192)
T 2fg5_A 171 INIE-ELFQGISRQI 184 (192)
T ss_dssp BSHH-HHHHHHHHTC
T ss_pred cCHH-HHHHHHHHHH
Confidence 9994 4444554433
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=172.17 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchh--HHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQEN--VRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~--~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.+..+..... .+...+....+..++ ..+.+|||||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999988655211 122233344455554 5789999999988 455667788999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++...... ..++++++|||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-------VFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-------HHTSEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-------HcCCeEEEEecCCCC
Confidence 999999999999999988888877544458999999999999764 33443333221 112389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.+ ..+.+.+.
T Consensus 155 gi~~l~-~~l~~~~~ 168 (175)
T 2nzj_A 155 NVAELF-EGVVRQLR 168 (175)
T ss_dssp SHHHHH-HHHHHHHH
T ss_pred CHHHHH-HHHHHHHH
Confidence 995544 45544443
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=3e-27 Score=180.69 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=120.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++.+..+.. .+.+|.+..... +..++ ..+.+|||||++++...+..+++.+|+
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT--AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCC--ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3567999999999999999999999998876 667777755443 33444 567999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCccccee-EEEee
Q psy12173 126 LVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIK-LIATQ 199 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 199 (224)
+++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+.. ++. ++++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~S 168 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-------GCVAYIEAS 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-------TCSCEEECB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-------CCCEEEEee
Confidence 9999999999999987 44555554332 57999999999999743 3344444433221 125 99999
Q ss_pred cCCCCccccchHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l 218 (224)
|++|.|+++.|...+..++
T Consensus 169 a~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999555554444443
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=8.2e-27 Score=176.48 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=125.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 467899999999999999999999988766 56666664443 344444 5899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCCC
Confidence 999999999999999888888877654458999999999999653 344454444421 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+...+..+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99555554444443
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=1.1e-26 Score=175.05 Aligned_cols=161 Identities=21% Similarity=0.248 Sum_probs=111.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG---EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 457899999999999999999999988776 5555554 445555554 378999999999999999989999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
++++|+|+++++++.....|+..+.... ...+.|+++|+||+|+.+. ...++..+..+. ...++++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------~~~~~~~~~ 157 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------LGDIPLFLT 157 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH------TTSCCEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh------cCCCeEEEE
Confidence 9999999999999988888888776542 2257899999999999543 234444433321 112389999
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
||++|.|+++.+...+...+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 158 SAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999555554444443
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.94 E-value=1.2e-26 Score=179.02 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=124.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 457899999999999999999999998877 5555555 4445555654 589999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----N--KMPFLETSALDS 155 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 999999999999999988888876653 257899999999999764 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.+...+....
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999655554444433
No 59
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=5.2e-27 Score=176.67 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS--DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 457899999999999999999999998776 66777775543 344554 6889999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++....... . +++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----H--HVAYFEASAKLRL 157 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTTB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----c--CCeEEEecCCCCC
Confidence 999999999999999999888866544468999999999999753 333443333211 1 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.+. .+.+.+.
T Consensus 158 gv~~l~~-~l~~~~~ 171 (181)
T 2fn4_A 158 NVDEAFE-QLVRAVR 171 (181)
T ss_dssp SHHHHHH-HHHHHHH
T ss_pred CHHHHHH-HHHHHHH
Confidence 9955544 4444443
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=1.2e-26 Score=176.08 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=120.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++.+..+.. .+.+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC--CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999988766 555655533 33344554 56888999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... .+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS-------YGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH-------HTCCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 99999999999999999988887655568999999999999754 333333333221 1238999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+ ..+.+.+.
T Consensus 154 ~~l~-~~l~~~~~ 165 (189)
T 4dsu_A 154 DDAF-YTLVREIR 165 (189)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 5544 44444443
No 61
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.94 E-value=7.4e-27 Score=174.23 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=114.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc--CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 457899999999999999999999988776 5556666443 4455443 689999999999999999889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.++ ...++..+..+. . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 153 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES-----V--GAKHYHTSAKQN 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----c--CCeEEEecCCCC
Confidence 999999999999998888887765532 147899999999999653 344444443321 1 238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.+. .+.+.
T Consensus 154 ~gi~~l~~-~l~~~ 166 (170)
T 1z08_A 154 KGIEELFL-DLCKR 166 (170)
T ss_dssp BSHHHHHH-HHHHH
T ss_pred CCHHHHHH-HHHHH
Confidence 99955444 44443
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.94 E-value=4.3e-27 Score=175.38 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=116.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence 45799999999999999999999988776 4555555 4445555544 6899999999999888888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKE-----L--GIPFIESSAKNDDN 151 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHHH-----H--TCCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHHHH-----c--CCeEEEEECCCCCC
Confidence 999999999888888888888776532 57899999999999543 333443333221 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.+. .+.+.+
T Consensus 152 v~~l~~-~l~~~~ 163 (170)
T 1g16_A 152 VNEIFF-TLAKLI 163 (170)
T ss_dssp HHHHHH-HHHHHH
T ss_pred HHHHHH-HHHHHH
Confidence 955554 444444
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=180.35 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=112.3
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhcc
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
.......++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 99 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFR 99 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHH
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHh
Confidence 3444567999999999999999999999988776 4555555 3444555544 67999999999999999988999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--------CCCHHHHHhhcCcccccCcccce
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--------ALSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
.+|++|+|+|+++++++.....|+..+..... .+.|+++|+||+|+.+ ....++..+... ..++
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-------~~~~ 171 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-------TYGA 171 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-------HHTC
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccccccccCHHHHHHHHH-------HcCC
Confidence 99999999999999999888888777655422 4789999999999852 122333322221 1123
Q ss_pred eEEEeecCCCCccccchHHHHH
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
+++++||++|.|+++.+...+.
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHH
Confidence 8999999999999555554443
No 64
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=6.6e-27 Score=178.55 Aligned_cols=163 Identities=23% Similarity=0.220 Sum_probs=120.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CCCCCCceeEEEEEe-----CCeEEEEEEcCCchhHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSH---------NLKPTEGFNITILQK-----GEYTLNIFELGGQENVRR 114 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~ 114 (224)
....+||+++|++|+|||||++.+.+.. .... .+.+|.+.+...... ....+.+|||||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3567999999999999999997666543 4311 123344444333221 347899999999999999
Q ss_pred HHHhhccCCCEEEEEEECC------CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC
Q psy12173 115 FWNTYFEDTDLLVFVVDSA------DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS 188 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 188 (224)
.+..+++.+|++|+|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+.++..
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---- 163 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE---- 163 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhc----
Confidence 9999999999999999999 4456666666666662 233689999999999998887888887776532
Q ss_pred cccce-eEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 189 RQHRI-KLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 189 ~~~~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++ +++++||++|.|+++.|...+...+.+.
T Consensus 164 ---~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 164 ---GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ---CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 23 7999999999999666655555554443
No 65
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.94 E-value=1.8e-26 Score=171.98 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+...+ ..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 456899999999999999999999998776 566666644 33444543 789999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++.++.....|+..+.... .+..|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----I--HAIFVETSAKNA 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999998888888776642 267899999999999653 233333333221 1 238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++ +...+.+
T Consensus 154 ~~i~~-l~~~i~~ 165 (170)
T 1z0j_A 154 ININE-LFIEISR 165 (170)
T ss_dssp BSHHH-HHHHHHH
T ss_pred cCHHH-HHHHHHH
Confidence 99944 4444444
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-26 Score=172.18 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=118.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence 45899999999999999999999998776 556666643 34455543 6899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~ 151 (170)
T 1ek0_A 80 LVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-------KGLLFFETSAK 151 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HTCEEEECCTT
T ss_pred EEEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHHH-------cCCEEEEEeCC
Confidence 999999999999999888888876542 57899999999999643 223333322211 12389999999
Q ss_pred CCCccccchH
Q psy12173 202 SNLHHLHVSV 211 (224)
Q Consensus 202 ~~~gv~~~~~ 211 (224)
+|.|+++.+.
T Consensus 152 ~~~gi~~l~~ 161 (170)
T 1ek0_A 152 TGENVNDVFL 161 (170)
T ss_dssp TCTTHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999954443
No 67
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.4e-26 Score=172.30 Aligned_cols=160 Identities=17% Similarity=0.274 Sum_probs=114.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+... .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 4678999999999999999999999887431 34556664443 334454 589999999999999999899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKE-----Y--GLPFMETSAKTG 158 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----H--TCCEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 9999999999888888888888776533 57899999999999764 234444333221 1 238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.+ ..+.+.+.
T Consensus 159 ~gi~~l~-~~l~~~~~ 173 (180)
T 2g6b_A 159 LNVDLAF-TAIAKELK 173 (180)
T ss_dssp TTHHHHH-HHHHHHHH
T ss_pred CCHHHHH-HHHHHHHH
Confidence 9995544 44444443
No 68
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=4.6e-27 Score=176.76 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=120.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC---eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE---YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
++.++|+++|++|+|||||++++.++.+.. .+.+|++ +....+...+ ..+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK--QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH--HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 457899999999999999999999988765 4556655 5556666654 79999999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCc-EEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVP-ILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|++++++++....|+..+..... ..+.| +++|+||+|+.+. ...++..+..+. . +++++++||
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa 154 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----N--GFSSHFVSA 154 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----H--TCEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----c--CCcEEEEeC
Confidence 99999999999888888888777655310 01445 8999999999753 334444333321 1 238999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.+ ..+.+.+.
T Consensus 155 ~~~~gi~~l~-~~l~~~~~ 172 (178)
T 2hxs_A 155 KTGDSVFLCF-QKVAAEIL 172 (178)
T ss_dssp TTCTTHHHHH-HHHHHHHT
T ss_pred CCCCCHHHHH-HHHHHHHH
Confidence 9999995544 45544443
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=9.7e-27 Score=173.14 Aligned_cols=156 Identities=19% Similarity=0.292 Sum_probs=121.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++.+..+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 56899999999999999999999988776 5566655 4444555543 6899999999999888888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-------LKLRFYRTSVKEDL 152 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-------HTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-------cCCeEEEEecCCCC
Confidence 99999999988888888888876653 57899999999999653 334444443321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 153 ~i~~l~~-~l~~~~ 165 (168)
T 1z2a_A 153 NVSEVFK-YLAEKH 165 (168)
T ss_dssp SSHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9954444 444443
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=176.52 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=122.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+..... +..++ ..+.+|||||++. ...+..+++.+|++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 457899999999999999999999998876 666777654433 44443 6799999999988 66777788999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..+..+. .++++++|||++|.
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-------LACAFYECSACTGE 175 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTSEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-------hCCeEEEECCCcCC
Confidence 999999999999988888888776544468999999999999753 334444333321 12389999999999
Q ss_pred -ccccchHHHHHHHH
Q psy12173 205 -HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 -gv~~~~~~~i~~~l 218 (224)
|+++.|...+...+
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 176 GNITEIFYELCREVR 190 (196)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 99655555444443
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=3.5e-26 Score=176.97 Aligned_cols=158 Identities=19% Similarity=0.271 Sum_probs=120.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 456899999999999999999999988776 4555554 4555566666 789999999999998888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+... ...++..+..+. .+++++++||++|.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKE-------LGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHHH-------HTCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHHH-------cCCEEEEEeCCCCC
Confidence 9999999999888888888887766532 47899999999999543 333333333211 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 168 gi~~l~~-~l~~~~ 180 (213)
T 3cph_A 168 NVNEIFF-TLAKLI 180 (213)
T ss_dssp SSHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9955554 444443
No 72
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.6e-26 Score=175.39 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC--SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 467899999999999999999999998776 6667766443 3344444 7899999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+. ...++..+..+ ..
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~ 164 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-------EI 164 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-------HH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-------Hc
Confidence 9999999999999887 5666665542 47999999999999764 12222222111 11
Q ss_pred ce-eEEEeecCCCCccccchHHHHHH
Q psy12173 192 RI-KLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 192 ~~-~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
++ +|++|||++|.|+++.+...+..
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 79999999999995555544443
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=7.4e-26 Score=172.21 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=112.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.++.+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 567899999999999999999999988766 5556655433 3344444 6699999999999999888999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-------YGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-------HTCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-------cCCeEEEEeCCCCCC
Confidence 999999999899888888877766543357999999999999763 344444444321 123899999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+++.+. .+.+.+.
T Consensus 170 i~~l~~-~l~~~~~ 182 (190)
T 3con_A 170 VEDAFY-TLVREIR 182 (190)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHHHHH
Confidence 955444 4444443
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=1.3e-26 Score=179.17 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=119.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.....+||+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 34567999999999999999999999998876 66677764443 33333 478999999999999988888999999
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++|+|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------ 173 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ------ 173 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH------
Confidence 99999999999999888 56666665542 57999999999999742 222322222211
Q ss_pred ccceeEEEeecC-CCCccccchHHHHHHHH
Q psy12173 190 QHRIKLIATQAP-SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~~~~~~Sa~-~~~gv~~~~~~~i~~~l 218 (224)
...++|++|||+ +|.|+++.|...+..++
T Consensus 174 ~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 174 IGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 001389999999 68999666665555544
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=1.4e-26 Score=174.06 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 456899999999999999999999988777 5556665 4444555555 689999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||++|
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-------LNVMFIETSAKAG 161 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTCEEEEEBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHHHHHHH-------cCCeEEEEeCCCC
Confidence 9999999999889888888888766432 57899999999999653 334444333321 1238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+ +++...+.+.
T Consensus 162 ~~i-~~l~~~l~~~ 174 (179)
T 2y8e_A 162 YNV-KQLFRRVAAA 174 (179)
T ss_dssp BSH-HHHHHHHHHT
T ss_pred CCH-HHHHHHHHHH
Confidence 999 4444455443
No 76
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=177.35 Aligned_cols=162 Identities=14% Similarity=0.217 Sum_probs=113.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.....++|+++|++|+|||||++++.+..+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++++|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT--EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34567999999999999999999999988776 66677764443 344555 57889999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+. ...++.....+.. .
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~ 167 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI----K 167 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH----T
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc----C
Confidence 999999999999999886 5666665543 48999999999999653 2222222222110 1
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
. .+|++|||++|.|+++.|...+...+.
T Consensus 168 ~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 A--ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp C--SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred C--cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 1 289999999999996655555544443
No 77
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=8.5e-26 Score=170.03 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=113.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+..++ ..+.+|||||+++. .+++++|++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ 76 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 76 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEE
Confidence 467899999999999999999999988764 34565533 33455544 67899999999873 357789999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++|+|+++++++.....|+..+... ....+.|+++|+||+|+.. ....++..+.... ..++++++|||
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~------~~~~~~~~~Sa 150 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD------MKRCSYYETXA 150 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH------HSSEEEEEEBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh------hcCCeEEEEec
Confidence 9999999999999988865444332 1225789999999999942 2344444443321 11238999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+...+.
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999996666555544443
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=2.9e-26 Score=176.61 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=122.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 457899999999999999999999998776 556666544 33444443 789999999999998888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|+|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+. ...++..+.... ... ++++++||+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~~Sa~ 157 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----KNN--IPYFETSAK 157 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----TTS--CCEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----cCC--ceEEEEeCC
Confidence 9999999999888888888877765421 146899999999999743 334444443321 122 389999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+...+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 158 EAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999655554444443
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=5.7e-26 Score=168.22 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=120.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.++|+++|++|+|||||++++.+..+.. .+.++.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 35799999999999999999999988766 5556665433 3344443 67899999999998888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|+++++++.....|+..+.......+.|+++++||+|+.+. ...++..+..+. .+++++++||++|.|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-------YGIPYIETSAKTRQGV 152 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-------HTCCEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-------cCCeEEEecCCCCCCH
Confidence 99999999898888888888766543357999999999999763 334443333321 1238999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
++ +...+.+.+
T Consensus 153 ~~-l~~~l~~~~ 163 (166)
T 2ce2_X 153 ED-AFYTLVREI 163 (166)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 44 444444443
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-26 Score=181.34 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=117.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 467899999999999999999999998877 4445554 4555566665 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----N--QLLFTETSALNS 160 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCCC-C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999999988888876653 257899999999999653 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+...
T Consensus 161 ~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 161 ENVDKAFEELINTI 174 (223)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99955554444433
No 81
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=1.6e-26 Score=175.29 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=118.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 456899999999999999999999998876 66677664432 33333 47899999999999988888899999999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+. ..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~ 154 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ------IG 154 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------HT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH------cC
Confidence 999999999999888 55666555432 57999999999999742 223333222211 00
Q ss_pred ceeEEEeecC-CCCccccchHHHHHHHH
Q psy12173 192 RIKLIATQAP-SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~~~~~~~Sa~-~~~gv~~~~~~~i~~~l 218 (224)
.++|++|||+ +|.|+++.|...+..++
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 1389999999 68999666655554443
No 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=8.6e-27 Score=177.46 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=117.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....+||+++|++|+|||||++++.++.+.. .+.+|++..+. ....+ ...+.+|||||+++++.. ..+++.+|+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS--EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 3567999999999999999999999998776 67777775432 33343 368899999999987764 457899999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec-
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA- 200 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa- 200 (224)
+++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+. ...++..+.... .++++++|||
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~Sa~ 167 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-------FGCLFFEVSAC 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-------HTCEEEECCSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-------cCCcEEEEeec
Confidence 9999999999999999988888766421 147899999999999643 344444443321 1238999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+++.|...+..
T Consensus 168 ~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVRE 183 (187)
T ss_dssp SCSHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHH
Confidence 8999996555544443
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=3.2e-26 Score=178.08 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+........ .+ ..+.+|||||++.+...+..++..+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK--NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC--EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 457899999999999999999999888776 666777755554443 12 78999999999998888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . ++++++|||++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~ 158 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----K--NYEYFEISAKT 158 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTTT-----C--CCEEEEEBTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCcEEEEecCC
Confidence 99999999999999888888877766432 46899999999999764 334444443332 2 23899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++ +...+.+.+.
T Consensus 159 g~gv~~-l~~~l~~~~~ 174 (218)
T 4djt_A 159 AHNFGL-PFLHLARIFT 174 (218)
T ss_dssp TBTTTH-HHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHh
Confidence 999954 4455555554
No 84
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=1.2e-25 Score=168.95 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=117.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++.+..+........+..+....+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 35689999999999999999999998877633333344555666777888999999999999888888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc--ceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH--RIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~ 207 (224)
+|++++.... ....+..+.. .+.|+++|+||+|+.+. ..++..+.++........+ .+++++|||++|.|+
T Consensus 86 ~d~~~~~~~~-~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv- 158 (178)
T 2lkc_A 86 VAADDGVMPQ-TVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL- 158 (178)
T ss_dssp EETTCCCCHH-HHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH-
T ss_pred EECCCCCcHH-HHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH-
Confidence 9999864433 3334443322 47899999999999764 3344444433222111122 258999999999999
Q ss_pred cchHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMY 219 (224)
Q Consensus 208 ~~~~~~i~~~l~ 219 (224)
+++...+.+.+.
T Consensus 159 ~~l~~~l~~~~~ 170 (178)
T 2lkc_A 159 DHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 555555555544
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=9.1e-26 Score=173.60 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=117.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...+||+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCS--SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 467899999999999999999999998876 5566665433 3344544 6899999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-------Ccccce-eEEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-------SRQHRI-KLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~ 197 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+........... ....++ ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999998998884 4544444332 479999999999997652111111000000000 001112 7999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
|||++|.|+ +++...+.+.+.
T Consensus 179 ~SA~~g~gi-~~l~~~i~~~~l 199 (201)
T 2gco_A 179 CSAKTKEGV-REVFEMATRAGL 199 (201)
T ss_dssp CCTTTCTTH-HHHHHHHHHHHH
T ss_pred eeCCCCCCH-HHHHHHHHHHHh
Confidence 999999999 444455555443
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=4.7e-27 Score=183.30 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=121.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE--e--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--K--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.....+||+++|++|+|||||++++..+.+.. .+.++.+....... . ....+.+|||||++.+...+..+++.+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTC--EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34567999999999999999999987776665 55666665544433 3 347899999999999988888889999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+..+.. ...++++++|||++|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-------RKKNLQYYDISAKSN 159 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHH-------HHHTCEEEECBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHH-------HHcCCEEEEEeCCCC
Confidence 99999999999999999988888887763 489999999999997653222111111 112238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.|. .+.+.+.
T Consensus 160 ~gi~~l~~-~l~~~l~ 174 (221)
T 3gj0_A 160 YNFEKPFL-WLARKLI 174 (221)
T ss_dssp BTTTHHHH-HHHHHHH
T ss_pred CCHHHHHH-HHHHHHH
Confidence 99955554 4444443
No 87
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=1.9e-25 Score=173.21 Aligned_cols=125 Identities=28% Similarity=0.341 Sum_probs=95.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC---CeEEEEEEcCCchhHHH-HHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG---EYTLNIFELGGQENVRR-FWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~D~~G~~~~~~-~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.++.+.. .+. ++......+.++ +..+.+|||||++++.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--BCC-CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--ccC-CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356899999999999999999999988776 443 344455556665 68899999999999998 77888999999
Q ss_pred EEEEEECCCCC-CHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCCCCHHHH
Q psy12173 126 LVFVVDSADPS-KLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGALSAEEV 177 (224)
Q Consensus 126 ii~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~ 177 (224)
+++|+|+++.+ ++.....++..++.. ....+.|+++|+||+|+.+....++.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 99999999843 355566666665443 12247899999999999877555443
No 88
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.6e-26 Score=175.58 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=113.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+..++|+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 3567899999999999999999999988776 5566666443 3344544 689999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-------Ccccce-eEE
Q psy12173 126 LVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-------SRQHRI-KLI 196 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~ 196 (224)
+++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.+.....+....+...... ....++ +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 9999999999888888 44555554432 579999999999997652111111111000000 001112 799
Q ss_pred EeecCCCCccccchHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+|||++|.|+++.+...+..++
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999555554444433
No 89
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=2.5e-26 Score=177.96 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=118.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 3467899999999999999999999998876 66677764433 344443 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC----------CHHHHHhhcCcccccCccccee
Q psy12173 126 LVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL----------SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
+|+|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+..+.. .. .+
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~----~~--~~ 155 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI----GA--AA 155 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH----TC--SE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc----CC--ce
Confidence 99999999999999886 5666665542 479999999999986542 233332222110 11 28
Q ss_pred EEEeecCCCCccccchHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
|++|||++|.|+++.|...+...
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHH
Confidence 99999999999955555444443
No 90
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3.7e-25 Score=171.73 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=114.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCC--eEEEEEEcCCchh-HHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGE--YTLNIFELGGQEN-VRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d~ 125 (224)
...+||+++|++|+|||||++++.+........+.+ +.++....+.+++ ..+.+|||+|++. ++.....+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999754321112222 2223344555655 4678999999887 45566677889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++++++|+....|+..+.......++|+++|+||+|+.+. ...++...... ..+++|++|||++|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~-------~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-------VFDCKFIETSAAVQ 187 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH-------HcCCEEEEEeCCCC
Confidence 9999999999999999888887765432357999999999999643 33333222111 11238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+...
T Consensus 188 ~~v~elf~~l~~~i 201 (211)
T 2g3y_A 188 HNVKELFEGIVRQV 201 (211)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99966665555444
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=175.69 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=100.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 356899999999999999999999988766 5566665433 3344444 5899999999999999998899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-------cCcccce-eEEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-------SSRQHRI-KLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~ 197 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+..+....... .....++ ++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 9999999999998886 5666655432 57999999999999765221111110000000 0011122 8999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
|||++|.|+++.|...+..++.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999996655555554443
No 92
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=7.2e-26 Score=171.24 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=116.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.++.+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 467899999999999999999999988776 5566665433 2344444 6778999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--------------HHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALS--------------AEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+... .++..+.. ...
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~ 151 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-------KEI 151 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-------HHT
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH-------Hhc
Confidence 9999999999998887 4666655442 3799999999999965421 11111111 011
Q ss_pred ce-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 192 RI-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 192 ~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++ ++++|||++|.|+++ +...+.+.+.
T Consensus 152 ~~~~~~~~Sa~~g~gi~~-l~~~l~~~~~ 179 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKT-VFDEAIRAVL 179 (186)
T ss_dssp TCSEEEECCTTTCTTHHH-HHHHHHHHHS
T ss_pred CCcEEEEecCCCccCHHH-HHHHHHHHHh
Confidence 22 899999999999954 4445544443
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.2e-25 Score=172.06 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=119.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+..... ...+ ...+.+|||||++++...+..+++.+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 356899999999999999999999988776 566776654433 3333 36899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....++..+..... ..+.|+++|+||+|+.+. ...++...... .++++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-------EWKCAFMETSAKMNY 156 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-------HHTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-------HhCCeEEEEecCCCC
Confidence 999999999888888777766554321 247899999999999764 33333333221 112389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|++ ++...+.+.+
T Consensus 157 gi~-~l~~~l~~~~ 169 (199)
T 2gf0_A 157 NVK-ELFQELLTLE 169 (199)
T ss_dssp SHH-HHHHHHHHHC
T ss_pred CHH-HHHHHHHHHH
Confidence 994 4444554443
No 94
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.1e-25 Score=167.82 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=117.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.++|+++|++|+|||||++++.++.+.. .+.++.+..... ...+ ...+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 5799999999999999999999988776 566676654433 3333 3679999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
|+|++++++++....++..+.... ...+.|+++|+||+|+.+. ....+...... .++++++++||++|.|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-------TWKCAFMETSAKLNHN 153 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-------HhCCeEEEecCCCCcC
Confidence 999999988888888877766532 2247899999999998653 23333322221 1123899999999999
Q ss_pred cccchHHHHHHH
Q psy12173 206 HLHVSVVEAEQA 217 (224)
Q Consensus 206 v~~~~~~~i~~~ 217 (224)
+ +++...+.+.
T Consensus 154 i-~~l~~~l~~~ 164 (172)
T 2erx_A 154 V-KELFQELLNL 164 (172)
T ss_dssp H-HHHHHHHHHT
T ss_pred H-HHHHHHHHHH
Confidence 9 4455455443
No 95
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=1.1e-25 Score=173.64 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=113.6
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCC--CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3567999999999999999999999988776 55666653332 333443 667799999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc--------cCcccceeEE
Q psy12173 126 LVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI--------SSRQHRIKLI 196 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 196 (224)
+++|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.....+.......... .......+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999887 5555555443 57999999999999765221111111110000 0011112699
Q ss_pred EeecCCCCccccchHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~ 215 (224)
+|||++|.|+++.+ ..+.
T Consensus 183 ~~SA~~g~gi~~l~-~~l~ 200 (204)
T 4gzl_A 183 ECSALTQRGLKTVF-DEAI 200 (204)
T ss_dssp ECCTTTCTTHHHHH-HHHH
T ss_pred EeeCCCCCCHHHHH-HHHH
Confidence 99999999995444 4443
No 96
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=1.8e-26 Score=174.08 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=106.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++..+.+.. .+.+|++.... .+.. ....+.+|||||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 457899999999999999999999988766 55566553221 1222 346677999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC------------CHHHHHhhcCcccccCcccc-
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL------------SAEEVGVALDLSSISSRQHR- 192 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~- 192 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+..+ ..+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~ 154 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK-------LIGA 154 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-------HHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-------HcCC
Confidence 9999999999998887 4666555442 479999999999986542 1222222211 111
Q ss_pred eeEEEeecCCCCccccchHHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.++++|||++|.|+++.+. .+.+.
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~-~l~~~ 178 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFD-AAIRV 178 (182)
T ss_dssp SEEEECCTTTCTTHHHHHH-HHHHH
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHH
Confidence 2899999999999955444 44443
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=7.5e-26 Score=171.72 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=110.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCceeEEEEEe-------CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQK-------GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~~~~~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+||+++|++|+|||||++++.+. .+.. .+.+|++........ ....+.+|||+|++++...+..++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG--MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC--CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccC
Confidence 479999999999999999999985 3333 556777766544332 35789999999999998888888899
Q ss_pred CCEEEEEEECCCC-CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCcccccCccc--ceeE
Q psy12173 123 TDLLVFVVDSADP-SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSSISSRQH--RIKL 195 (224)
Q Consensus 123 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~--~~~~ 195 (224)
++++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+. ..... ..++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 153 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKRGFPAIRDY 153 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCTTSCEEEEE
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----HhcCCcchhhe
Confidence 9999999999998 46888888888876542 478999999999997642211 1112221 01111 0139
Q ss_pred EEeecCCCC-ccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNL-HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~-gv~~~~~~~i~~~l~~ 220 (224)
+++||++|. |+ +.+...+.+.+.+
T Consensus 154 ~~~Sa~~~~~~~-~~l~~~i~~~~~~ 178 (184)
T 2zej_A 154 HFVNATEESDAL-AKLRKTIINESLN 178 (184)
T ss_dssp EECCTTSCCHHH-HHHHHHHHHHHHC
T ss_pred EEEecccCchhH-HHHHHHHHHHHhc
Confidence 999999997 88 5555566555543
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=3.9e-27 Score=180.91 Aligned_cols=152 Identities=21% Similarity=0.263 Sum_probs=110.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
....++|+++|++|+|||||+++|.+..+........+..+....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999999887762222223445566666665 6899999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.. ...++.+.. +++++++||+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~----------~~~~~~vSA~ 178 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL----------GIPFLETSAK 178 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT----------TCCBCCCCC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc----------CCeEEEEECC
Confidence 99999999999999988888876543 2578999999999996541 122222222 2389999999
Q ss_pred CCCccccchH
Q psy12173 202 SNLHHLHVSV 211 (224)
Q Consensus 202 ~~~gv~~~~~ 211 (224)
+|.|+++.|.
T Consensus 179 ~g~gv~~l~~ 188 (199)
T 3l0i_B 179 NATNVEQSFM 188 (199)
T ss_dssp --HHHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999954444
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=2.1e-24 Score=160.91 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhcc--C
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYFE--D 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~ 122 (224)
..++|+++|++|+|||||++++.+..+........|.+.....+.+++..+.+|||||++++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 357999999999999999999999876552222224455566677788999999999988653 33344453 8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|++++|+|+++. +....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~~ 144 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------VKVVPL 144 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEEC
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------CCEEEE
Confidence 9999999999874 444456656544 37899999999998532 12333333332 289999
Q ss_pred ecCCCCccccchHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~ 216 (224)
||++|.|+++.|. .+.+
T Consensus 145 SA~~~~~v~~l~~-~l~~ 161 (165)
T 2wji_A 145 SAAKKMGIEELKK-AISI 161 (165)
T ss_dssp BGGGTBSHHHHHH-HHHH
T ss_pred EcCCCCCHHHHHH-HHHH
Confidence 9999999954444 4443
No 100
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=5e-24 Score=167.07 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=107.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc------hh----HHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ------EN----VRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~------~~----~~~~~~~~ 119 (224)
...++|+++|++|+|||||++++.+..+........|.......+..++..+.+|||||+ +. +... ..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI-TAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH-HHh
Confidence 457899999999999999999999988754222233455666666777899999999998 43 3332 334
Q ss_pred ccCCCEEEEEEECCCCCCHHH--HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHH---HHhhcCcccccCcccc
Q psy12173 120 FEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEE---VGVALDLSSISSRQHR 192 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~---~~~~~~~~~~~~~~~~ 192 (224)
+..+|++|+|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+... .+. ..+..+. ....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~ 178 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN-----VKNP 178 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-----CCSC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-----cCCC
Confidence 788999999999999888652 33455555432 24799999999999976422 221 1111110 1101
Q ss_pred eeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+++++|||++|.|+++.+. .+.+.+.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~-~l~~~i~ 204 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKI-TACELLK 204 (228)
T ss_dssp EEEEECCTTTCTTHHHHHH-HHHHHHH
T ss_pred ceEEEEecccCCCHHHHHH-HHHHHHH
Confidence 3899999999999955554 4444443
No 101
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=4.4e-24 Score=163.25 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=109.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCC-CCceeEEEEEeCC--eEEEEEEcCCchh-HHHHHHhhccCCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSLSHNLKP-TEGFNITILQKGE--YTLNIFELGGQEN-VRRFWNTYFEDTD 124 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~~~~~~-t~~~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d 124 (224)
..+||+++|++|+|||||++++.+.. +.. .+.+ +.++....+.+++ ..+.+|||+|.+. ++.....+++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--DXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc--cccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 46899999999999999999999643 232 2222 2233344555655 4678999999876 3334566678899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++|||+++.+++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++|++|||++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-------~~~~~~~e~SA~~ 155 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-------VFDXKFIETSAAV 155 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-------HhCCceEEecccc
Confidence 99999999999999999888877765433357999999999999643 33333222111 1123899999999
Q ss_pred CCccccchHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQA 217 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~ 217 (224)
|.|+++.|...+...
T Consensus 156 g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 156 QHNVKELFEGIVRQV 170 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999966665555444
No 102
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=3.6e-24 Score=158.21 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchh-------HHHHHHhhccCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQEN-------VRRFWNTYFEDTD 124 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 124 (224)
++|+++|++|+|||||++++.+..+.... ....+.+.....+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988754221 222344556666777888999999999886 4556677789999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccce-eEEEeecCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRI-KLIATQAPSN 203 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 203 (224)
++++|+|++++.+. ...++..+... .+.|+++|+||+|+.+. .++..+.. ..++ +++++||++|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--------~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--------GLGFGDPIPTSSEHA 146 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--------GGSSCSCEECBTTTT
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--------hCCCCCeEEEecccC
Confidence 99999999997443 33445555444 47899999999999754 11111111 1112 7999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++ +...+.+
T Consensus 147 ~gv~~-l~~~l~~ 158 (161)
T 2dyk_A 147 RGLEE-LLEAIWE 158 (161)
T ss_dssp BSHHH-HHHHHHH
T ss_pred CChHH-HHHHHHH
Confidence 99944 4444433
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=1.8e-25 Score=171.29 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEE-eCCeEEEEEEcCCchhHHHHH---HhhccC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQ-KGEYTLNIFELGGQENVRRFW---NTYFED 122 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~---~~~~~~ 122 (224)
...+.+||+++|++|+|||||++++.+......+ ....+.......+. .....+.+|||||++++.... ..++++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 3456899999999999999999988875422200 01111111222222 345899999999999987765 778999
Q ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCc--ccccCccccee
Q psy12173 123 TDLLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDL--SSISSRQHRIK 194 (224)
Q Consensus 123 ~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~--~~~~~~~~~~~ 194 (224)
+|++|+|+|++++ +++..+..|+..+.... .+.|+++|+||+|+.++.. ..++...... ........+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999999997 45555666666654332 5899999999999865311 1111111100 00000123459
Q ss_pred EEEeecCCCCccccchHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
|++|||++ .|+++.|...+.
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHH
Confidence 99999999 999666655544
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=2.8e-24 Score=175.92 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=117.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhH-----HHHHHhhccCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQK-GEYTLNIFELGGQENV-----RRFWNTYFEDT 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----~~~~~~~~~~~ 123 (224)
..+||+++|++|+|||||++++.++.... ...+.+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35799999999999999999999874332 23567888888888776 6789999999999988 45667778999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH---HHHhcCCCCCCcEEEEEeCCCCCCCCCH--------HHHHhhcCcccccCcccc
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELK---NLLGDQRLSTVPILVIANKQDVPGALSA--------EEVGVALDLSSISSRQHR 192 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~ 192 (224)
|++|+|+|++++++++++..|.. .+... ..++|+++|+||+|+.+.... ++..+..+.. ....
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~----g~~~ 155 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF----GFPN 155 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT----TCCS
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc----CCCC
Confidence 99999999999999998866543 33332 257999999999999762111 1222221110 1002
Q ss_pred eeEEEeecCCCCccccchHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+++++|||++ .|+.+.+...+.+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHH
Confidence 4999999999 7886777665543
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=4.4e-26 Score=175.60 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=113.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|++... ..+.. ....+.+|||||++++...+..+++.+|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 567999999999999999999999888766 5555554322 22233 346677999999999999988899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHh--------hcCcccccCcccce-eEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGV--------ALDLSSISSRQHRI-KLI 196 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~ 196 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+..+ ..+..... ...++ +++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 182 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-KEIGAVKYL 182 (204)
Confidence 9999999999999887 4555443322 3789999999999975421111000 00000111 12223 799
Q ss_pred EeecCCCCccccchHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i 214 (224)
+|||++|.|+++.+...+
T Consensus 183 ~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAI 200 (204)
Confidence 999999999965555443
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.6e-23 Score=159.76 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=102.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCCeEEEEEEcCC----------chhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGEYTLNIFELGG----------QENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 117 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ ........+ ..+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA--RTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--ccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 467899999999999999999999987554 2233322 112222232 3699999999 777877777
Q ss_pred hhccCC---CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCcccccCcc
Q psy12173 118 TYFEDT---DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~ 190 (224)
.+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+..... ++.+.+.. .
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~------~ 166 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI------D 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC------C
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc------c
Confidence 777666 9999999999987776532 2223333 478999999999998754332 23322321 1
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
..++++++||++|.|+ +++...+.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gv-~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGK-DEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTH-HHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCH-HHHHHHHHHHh
Confidence 2338999999999999 55555555443
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=2.6e-23 Score=156.13 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchhH----HH----HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQENV----RR----FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----~~----~~~~~~~ 121 (224)
...+|+++|++|+|||||++++.+..+.... ....|.++....+..++..+.+|||||++++ .. ....+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3469999999999999999999987643221 2233445666777788888999999998542 11 1123578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... + .. ....+++++|||+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~--------~--~~--~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL--------G--MS--EVNGHALIRLSAR 148 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC--------E--EE--EETTEEEEECCTT
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh--------h--hh--hccCCceEEEeCC
Confidence 9999999999999988763 45666555432 24799999999999854310 0 01 1123489999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|++ ++...+.+.+
T Consensus 149 ~g~gv~-~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVD-VLRNHLKQSM 164 (172)
T ss_dssp TCTTHH-HHHHHHHHHC
T ss_pred CCCCHH-HHHHHHHHHh
Confidence 999994 4444554443
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=1e-24 Score=177.92 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH---HHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRR---FWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ii~v 129 (224)
||+++|+.|+|||||++++.++.++.. ..+.+|+++....+. ...++.+|||+|+++|+. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 689999999999999999887754431 235688887776653 448899999999999964 467789999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCCCC----HHHHHhhc--CcccccCcccceeEEEeecC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGALS----AEEVGVAL--DLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|+++. +.+...+|..++.. ...++.|+++++||+|+.++.. ..++.+.. ++........++.|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999998 44445555443321 1125799999999999976521 12222221 11111001245699999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+ .+|.++|...+.+.+.+
T Consensus 158 d-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTT
T ss_pred C-CcHHHHHHHHHHHHHhh
Confidence 7 58988888777655443
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=1.3e-24 Score=164.92 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC-----------chhHHHHHHhhcc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG-----------QENVRRFWNTYFE 121 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~~~ 121 (224)
++|+++|++|+|||||++++.+..+.. .+.+++.......... .+.+||||| ++.+...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc--CCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998776 4445555444444444 689999999 6777777777776
Q ss_pred C-CCEEEEEEECCCCCCHHHH-HHHHHH--------HHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCc
Q psy12173 122 D-TDLLVFVVDSADPSKLPVA-AMELKN--------LLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSR 189 (224)
Q Consensus 122 ~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 189 (224)
. ++++++|+++.+..++.+. ..|... +.......+.|+++|+||+|+.+.. ..+++.+.++. ...
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~ 154 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV---PLS 154 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC---CGG
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhh---hhh
Confidence 6 7766666666677777665 333221 1111111479999999999997753 12333333332 111
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.+.+++++|||++|.|+++.+. .+.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~-~l~~~~~ 183 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKN-RIFEVIR 183 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHH-HHHHHHH
T ss_pred ccCCcEEEEecCCCCCHHHHHH-HHHHhcc
Confidence 1233689999999999955444 4544443
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=2.6e-23 Score=157.74 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=109.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhc--c
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYF--E 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~--~ 121 (224)
++.++|+++|++|+|||||++++.+..+........|.+.....+..++..+.+|||||++.+. .....++ .
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4568999999999999999999998775542232334455666777788999999999988663 3344444 3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ +++++
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~ 147 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------VKVVP 147 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEE
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC----------CCeEE
Confidence 5999999999886 5556666666654 47899999999998532 23344444332 28999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||++|.|+ +++.+.+.+.+.
T Consensus 148 ~Sa~~~~~v-~~l~~~i~~~~~ 168 (188)
T 2wjg_A 148 LSAAKKMGI-EELKKAISIAVK 168 (188)
T ss_dssp CBGGGTBSH-HHHHHHHHHHHT
T ss_pred EEecCCCCH-HHHHHHHHHHHH
Confidence 999999999 445555555443
No 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=1.7e-23 Score=167.12 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=110.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--c
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--E 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 121 (224)
.+.++|+++|++|+|||||+++|++..+...+....|.......+..++..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 35689999999999999999999998866533334455556666777789999999999876542 223333 6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.+. .+.+++.+.++ +++++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----------~~vi~ 145 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----------IPVVF 145 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----------SCEEE
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC----------CCEEE
Confidence 89999999999986443 345555543 37999999999998532 23444444443 38999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||++|.|+ +++...+.+.+.
T Consensus 146 ~SA~~g~gi-~el~~~i~~~~~ 166 (258)
T 3a1s_A 146 TSSVTGEGL-EELKEKIVEYAQ 166 (258)
T ss_dssp CCTTTCTTH-HHHHHHHHHHHH
T ss_pred EEeeCCcCH-HHHHHHHHHHhh
Confidence 999999999 555555555443
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=4.2e-23 Score=169.93 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=116.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCC--SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCc--ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 45899999999999999999999988776 56666664333 344554 45669999999999988888999999999
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCcccc
Q psy12173 128 FVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~ 192 (224)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.. ..++..+..+ ..+
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~ 302 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-------EIG 302 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-------HTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-------HcC
Confidence 999999999998887 4555554432 389999999999986531 1122211111 112
Q ss_pred e-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 193 I-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 193 ~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ ++++|||++|.|+++. ...+.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l-~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTV-FDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHH-HHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHH-HHHHHHHHh
Confidence 2 8999999999999544 445554443
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=8.4e-23 Score=155.41 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCC----------chhHHHHHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGG----------QENVRRFWNT 118 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G----------~~~~~~~~~~ 118 (224)
...++|+++|++|+|||||++++.+..+.. ..++.+..... ....+..+.+||||| ++.+...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF---VSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC---CCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc---ccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 467899999999999999999999987433 22232221111 112244688999999 6677776666
Q ss_pred hccCC---CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 119 YFEDT---DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 119 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
+++.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+........+....... ....+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS--KYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH--SSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHh--hcCCCce
Confidence 66555 999999999887554332 22233333 27899999999999765433333222211111 1112389
Q ss_pred EEeecCCCCccccchHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+++||++|.|+ +++...+.+.+
T Consensus 171 ~~~Sa~~~~gv-~~l~~~l~~~l 192 (195)
T 3pqc_A 171 IPTSSVTGEGI-SELLDLISTLL 192 (195)
T ss_dssp EECCTTTCTTH-HHHHHHHHHHH
T ss_pred EEEecCCCCCH-HHHHHHHHHHh
Confidence 99999999999 55555555544
No 114
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=7.1e-24 Score=169.16 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH----------HHHhhc--
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR----------FWNTYF-- 120 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~-- 120 (224)
.+|+++|++|+|||||+++|++..+...+....|.+.....+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999998765544444555677777888889999999999876542 445555
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+.+|++|+|+|+++.++.. .+...+.. .+.|+++|+||+|+.+. ...+.+.+.++ ++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~---~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~vi 144 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHL---YLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------CSVI 144 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHH---HHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC----------SCEE
T ss_pred CCCCEEEEEeeCCCchhHH---HHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC----------CCEE
Confidence 8999999999999954333 23333322 37999999999998543 23344444443 3999
Q ss_pred EeecCCCCccccchHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~ 215 (224)
++||++|.|+ +++...+.
T Consensus 145 ~~SA~~g~gi-~el~~~i~ 162 (256)
T 3iby_A 145 PIQAHKNIGI-PALQQSLL 162 (256)
T ss_dssp ECBGGGTBSH-HHHHHHHH
T ss_pred EEECCCCCCH-HHHHHHHH
Confidence 9999999999 44444443
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.89 E-value=1.6e-22 Score=155.21 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=116.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+ +....+.+++ ..+.+||++|++.++.....+++.+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 356899999999999999999999998776 5556654 4455666665 567899999999988777778889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++..++.+...|+..+.... ..+.|+++++||+|+.+. ...++...... ..++.++++||+++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-------~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-------KNNLSFIETSALDS 152 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHH-------HcCCeEEEEeCCCC
Confidence 999999999888887777776665432 246899999999999653 33333333221 11238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|++ ++...+.+.+
T Consensus 153 ~~i~-~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVE-EAFKNILTEI 166 (199)
T ss_dssp TTHH-HHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHH
Confidence 9995 4444554444
No 116
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=1.3e-23 Score=169.26 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=106.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH----------HHHHhh-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR----------RFWNTY- 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~- 119 (224)
..++|+++|++|+|||||+|+|++..+...+....|.+.....+...+..+.+|||||+.++. .....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999999886554444445566677777788899999999977644 222222
Q ss_pred -ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCccccee
Q psy12173 120 -FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
.+.+|++++|+|+++.++... +...+... ++|+++|+||+|+.+. ...+++.+.++ ++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~ 144 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLG----------CP 144 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHT----------SC
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcC----------CC
Confidence 379999999999998544333 33333332 7999999999998543 23344444443 38
Q ss_pred EEEeecCCCCccccchHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
++++||++|.|+ +++...+.+
T Consensus 145 ~i~~SA~~g~gi-~el~~~i~~ 165 (274)
T 3i8s_A 145 VIPLVSTRGRGI-EALKLAIDR 165 (274)
T ss_dssp EEECCCGGGHHH-HHHHHHHHT
T ss_pred EEEEEcCCCCCH-HHHHHHHHH
Confidence 999999999999 455555544
No 117
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.88 E-value=5.2e-23 Score=160.32 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=105.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CC-CCCCCCCceeEEEEE-eCCeEEEEEEcCC----------chhHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LS-HNLKPTEGFNITILQ-KGEYTLNIFELGG----------QENVRRFW 116 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~-~~~~~t~~~~~~~~~-~~~~~~~l~D~~G----------~~~~~~~~ 116 (224)
...++|+++|++|+|||||+++|++..+. .. .....|......... .++..+.+||||| ++.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 45789999999999999999999998732 21 122223334444444 3568899999999 34555555
Q ss_pred HhhccC---CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHH----hhcCcccccCc
Q psy12173 117 NTYFED---TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVG----VALDLSSISSR 189 (224)
Q Consensus 117 ~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~ 189 (224)
..++.. +|++++|+|++++.+ .....+...+.. .++|+++|+||+|+.......+.. +.+........
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 555544 788999999998644 333334444443 478999999999997652222111 22111000000
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...++++++||++|.|+ +++...+.+.+.
T Consensus 182 ~~~~~~~~~SA~~g~gv-~~l~~~l~~~~~ 210 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGL-DDAHALIESWLR 210 (223)
T ss_dssp CSCEEEEEEBTTTTBSH-HHHHHHHHHHHC
T ss_pred CCCCeEEEeecCCCcCH-HHHHHHHHHhcC
Confidence 13348999999999999 555566666554
No 118
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.6e-22 Score=171.63 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=111.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCc----------hhHHHHHH-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGGQ----------ENVRRFWN- 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~~- 117 (224)
...++|+++|.+|+|||||++++++..+. .......|.+.....+..++..+.+|||||+ +.+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999988754 2122233445556677778889999999997 66665543
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+.+... .++..+.+..... ....+++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 325 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ--FLDYAPI 325 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG--GGTTSCE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc--cCCCCCE
Confidence 468899999999999999887664 44444433 4799999999999976533 3333332211111 1112489
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 326 ~~~SA~tg~~v-~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 326 LFMSALTKKRI-HTLMPAIIKASEN 349 (436)
T ss_dssp EECCTTTCTTG-GGHHHHHHHHHHH
T ss_pred EEEecccCCCH-HHHHHHHHHHHHH
Confidence 99999999999 4555555555543
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.88 E-value=4.4e-24 Score=170.32 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=106.1
Q ss_pred cccccEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCCCC-c--eeEEE----------------EEeC
Q psy12173 49 DIFQRKILILGLD---------NSGKSTLIKQISS---GNTSLSHNLKPTE-G--FNITI----------------LQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~---------~sGKSsl~~~l~~---~~~~~~~~~~~t~-~--~~~~~----------------~~~~ 97 (224)
.+..+||+++|++ |+|||||++++.+ ..+.. .+.+|+ + +.... +...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~--~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHL--DHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCS--CCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCcccc--ccCCcccccccceeEeecccccccccccccccCCc
Confidence 3567999999999 9999999999999 44444 344443 1 11111 1224
Q ss_pred CeEEEEEE-----------------------cCCchhHHHHHHhhcc---------------------CCCEEEEEEECC
Q psy12173 98 EYTLNIFE-----------------------LGGQENVRRFWNTYFE---------------------DTDLLVFVVDSA 133 (224)
Q Consensus 98 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 133 (224)
...+.+|| ++|++++...+..++. ++|++|+|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 47899999 5555555555555555 799999999999
Q ss_pred CC--CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 134 DP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 134 ~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++ ++++.+..|+..+.......++|+++|+||+|+.+....++..+... ...++++++|||++|.|+++.|.
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~------~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL------SKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH------TSSSCCEEECBTTTTBSHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH------hcCCCeEEEEECCCCCCHHHHHH
Confidence 98 99999999988876542224799999999999965422222222221 11123899999999999955444
Q ss_pred HHHHHHH
Q psy12173 212 VEAEQAM 218 (224)
Q Consensus 212 ~~i~~~l 218 (224)
.+.+.+
T Consensus 248 -~l~~~l 253 (255)
T 3c5h_A 248 -TLVQLI 253 (255)
T ss_dssp -HHHHHH
T ss_pred -HHHHHh
Confidence 444443
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=1.7e-22 Score=162.56 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--cC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--ED 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~ 122 (224)
+.++|+++|++|+|||||+++|++..+...+....|.+.....+.+.+..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4679999999999999999999998875533444455566677778889999999999776543 344444 78
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|++++|+|+++. .....++..+... ...|+++|+||+|+.+. ...+++.+.++ ++++++
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~~~~~ 145 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----------VPVIPT 145 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------SCEEEC
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------CcEEEE
Confidence 9999999999985 3344455555543 23999999999997432 33455555554 289999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+ +++...+.+.+.
T Consensus 146 Sa~~g~gi-~~l~~~i~~~~~ 165 (271)
T 3k53_A 146 NAKKGEGV-EELKRMIALMAE 165 (271)
T ss_dssp BGGGTBTH-HHHHHHHHHHHH
T ss_pred EeCCCCCH-HHHHHHHHHHHh
Confidence 99999999 556666666554
No 121
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=8.9e-23 Score=168.79 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=119.6
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh----H---HHHHHhh
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN----V---RRFWNTY 119 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~----~---~~~~~~~ 119 (224)
+.....+|+++|.+++|||||+++++..++...+....|...+...+.+.+ ..+.+|||||..+ + ...+...
T Consensus 154 eLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~ 233 (342)
T 1lnz_A 154 ELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH 233 (342)
T ss_dssp EEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH
T ss_pred hhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHH
Confidence 333456899999999999999999998775433344567777777777765 8999999999654 1 1222233
Q ss_pred ccCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCccccee
Q psy12173 120 FEDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
++.+|++|+|+|+++ .++++....++.++..... ...+|+++|+||+|+.... ..+++.+.+.. . ++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~--~~ 305 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------D--YP 305 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------C--CC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------C--CC
Confidence 556999999999998 7788888888888776532 3579999999999997541 12233333321 1 27
Q ss_pred EEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++++||+++.|+ +++...+.+.+...
T Consensus 306 v~~iSA~tg~gi-~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 306 VFPISAVTREGL-RELLFEVANQLENT 331 (342)
T ss_dssp BCCCSSCCSSTT-HHHHHHHHHHHTSC
T ss_pred EEEEECCCCcCH-HHHHHHHHHHHhhC
Confidence 999999999999 66666777766543
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.2e-21 Score=160.30 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeC-CeEEEEEEcCCchh----------HHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKG-EYTLNIFELGGQEN----------VRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~l~D~~G~~~----------~~~~~~ 117 (224)
.+.-.|+++|.+|+|||||+|+|++.++...+... .|..........+ +.++.+|||||+.. +.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45679999999999999999999998876432333 3334445556667 89999999999843 335566
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
.+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+..+.+... ....++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~----~~~~~~i~ 159 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK----HPELTEIV 159 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH----CTTCCCEE
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh----ccCCCeEE
Confidence 778999999999999998888776655555544 378999999999997 332222222222100 01123899
Q ss_pred EeecCCCCccccchHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++||++|.|+ +++...+.+.+
T Consensus 160 ~vSA~~g~gv-~~L~~~l~~~l 180 (308)
T 3iev_A 160 PISALKGANL-DELVKTILKYL 180 (308)
T ss_dssp ECBTTTTBSH-HHHHHHHHHHS
T ss_pred EEeCCCCCCH-HHHHHHHHHhC
Confidence 9999999999 55555555443
No 123
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=8.7e-22 Score=160.52 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 121 (224)
+..+|+++|.+|+|||||+|+|++.++...+....|+. ........++.++.+|||||... +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988754323333333 33334556789999999999765 4556667789
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeec
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.+|++++|+|++++.+. ...++...+.... .+.|+++|+||+|+.+... ..+..+.+ ... .+++++||
T Consensus 86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~--~~~~~iSA 154 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPE--AEPRMLSA 154 (301)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STT--SEEEECCT
T ss_pred cCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCc--CcEEEEeC
Confidence 99999999999987443 3455544444321 4799999999999976522 22222222 112 27999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +.+.+.+.+
T Consensus 155 ~~g~gv-~~l~~~l~~ 169 (301)
T 1wf3_A 155 LDERQV-AELKADLLA 169 (301)
T ss_dssp TCHHHH-HHHHHHHHT
T ss_pred CCCCCH-HHHHHHHHH
Confidence 999999 445445443
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.88 E-value=2.1e-22 Score=161.90 Aligned_cols=146 Identities=21% Similarity=0.293 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhcc--CC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYFE--DT 123 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~~ 123 (224)
.++|+++|++|+|||||+++|++..+...+....|.......+.. +..+.+|||||+.++. .....++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 479999999999999999999997754433333344444444444 6789999999988764 34444454 69
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
|++++|+|+++.++ ...+...+.. .+.|+++|+||+|+... ...+++.+.++ ++++++|
T Consensus 82 d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~vi~~S 144 (272)
T 3b1v_A 82 DSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----------VPVVATS 144 (272)
T ss_dssp SEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEECB
T ss_pred CEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------CCEEEEE
Confidence 99999999998533 3344445443 37999999999998532 23444444443 3899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+++ +...+.+
T Consensus 145 A~~g~gi~e-l~~~i~~ 160 (272)
T 3b1v_A 145 ALKQTGVDQ-VVKKAAH 160 (272)
T ss_dssp TTTTBSHHH-HHHHHHH
T ss_pred ccCCCCHHH-HHHHHHH
Confidence 999999944 4444444
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.87 E-value=5.4e-22 Score=151.40 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=116.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..++. .+.+|.+ +....+.+++ ..+.+||++|++++...+..+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 467899999999999999999999998877 5556665 3455666666 456679999999887777777889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++..++++...|+..+.... ....|+++++||+|+.+. ...++...... ..++.++++||+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-------~~~~~~ld~Sald~ 176 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-------KNGLSFIETSALDS 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-------HcCCEEEEEeCCCC
Confidence 999999999888877777776654432 246899999999999653 33333332221 11238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+ +++.+.+.+
T Consensus 177 ~~v-~~l~~~l~~ 188 (191)
T 1oix_A 177 TNV-EAAFQTILT 188 (191)
T ss_dssp TTH-HHHHHHHHH
T ss_pred CCH-HHHHHHHHH
Confidence 999 444445544
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=4.1e-22 Score=174.50 Aligned_cols=156 Identities=16% Similarity=0.255 Sum_probs=106.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE--------Ee----CCeEEEEEEcCCchhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--------QK----GEYTLNIFELGGQENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~--------~~----~~~~~~l~D~~G~~~~~~~~~ 117 (224)
...+||+++|++|+|||||++++.+..+.. .+.+|.+...... .. .+..+.+|||||++.+.....
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~--~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 467999999999999999999999998876 6677877665543 11 258999999999999998888
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++++|++|+|+|+++.+ ....|+..+.... .+.|+++|+||+|+.+. ...++..+..... ++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~ 184 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI-------ENRF 184 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-------TTCE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhc-------CCce
Confidence 8899999999999998764 4455555555543 36899999999999764 3455555544321 2379
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 185 ~~vSA~~g~gi-~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 185 HRISCKNGDGV-ESIAKSLKSAVLH 208 (535)
T ss_dssp EECCC-----C-TTHHHHHHHHHTC
T ss_pred EEEecCcccCH-HHHHHHHHHHHhc
Confidence 99999999999 5555566665543
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=3.1e-23 Score=161.14 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=103.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccC----CC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFED----TD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~----~d 124 (224)
...++|+++|++|+|||||++++.+..+... ..+.++++. .+....+.+|||||++.++..+..+++. +|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 84 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 84 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHHhccccCC
Confidence 4568999999999999999999999876541 112232221 1256789999999999998877777776 89
Q ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-CcccceeEEEee
Q psy12173 125 LLVFVVDSA-DPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-SRQHRIKLIATQ 199 (224)
Q Consensus 125 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~S 199 (224)
++|+|+|++ +++++.....++..+.... ...++|+++|+||+|+......+++.+.+...... .....++|+++|
T Consensus 85 ~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 164 (218)
T 1nrj_B 85 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE 164 (218)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999 8899999999988887642 12579999999999998876655443332210000 011123788888
Q ss_pred cCCCCcc
Q psy12173 200 APSNLHH 206 (224)
Q Consensus 200 a~~~~gv 206 (224)
|++|.+.
T Consensus 165 a~~~~~~ 171 (218)
T 1nrj_B 165 RKINEED 171 (218)
T ss_dssp -------
T ss_pred ccccccc
Confidence 8877653
No 128
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=4.7e-22 Score=165.05 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=104.1
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+|||+|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 346677777888889999999999999999999999999999999999999 5679999999999988765
Q ss_pred CCCCcEEEEEeCCCCCC-----------------CCCHHHHHhhcC-----cccccCcccceeEEEeecCCCCccccchH
Q psy12173 154 LSTVPILVIANKQDVPG-----------------ALSAEEVGVALD-----LSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
..++|++|++||+|+.. ..+.++..+.+. +... .....+.+++|||++|.||++.|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~-~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKR-KDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSC-TTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcc-cCCCceEEEEEECcCchhHHHHHH
Confidence 67899999999999852 133444444332 1110 012234899999999999977776
Q ss_pred HHHHHHHH
Q psy12173 212 VEAEQAMY 219 (224)
Q Consensus 212 ~~i~~~l~ 219 (224)
..+..++.
T Consensus 337 ~v~~~i~~ 344 (353)
T 1cip_A 337 AVTDVIIK 344 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1e-21 Score=168.79 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=112.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCC----------chhHHHHHH-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGG----------QENVRRFWN- 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~- 117 (224)
...++|+++|.+++|||||++++.+.... .......|.+.....+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45689999999999999999999976532 212223344455566778888999999999 777777654
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+ ....++...... .++|+++|+||+|+.+. ...++..+.++....... .+++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 345 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD--YAPI 345 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGT--TSCE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCC--CCCE
Confidence 47889999999999998643 444444444444 47999999999999764 223444443321111111 2389
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 346 ~~~SA~~g~gv-~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRI-HTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTG-GGHHHHHHHHHHH
T ss_pred EEEcCCCCcCH-HHHHHHHHHHHHH
Confidence 99999999999 5555566665543
No 130
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=1.6e-21 Score=168.44 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=110.7
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGN-------TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY 119 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 119 (224)
...+..++|+++|++++|||||+++|.+.. +..+.....|++..+..+..++..+.+|||||++++...+...
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 344678999999999999999999999876 2232233456666666677788999999999999998888888
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEe
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIAT 198 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 198 (224)
+..+|++|+|+|++++.. .+..+.+..+ .. .++|.++++||+|+.+....++..+.+....... ....++++++
T Consensus 94 ~~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp TTSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HhhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999999998632 2233333332 22 3788899999999976322222222211000000 0113489999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+ +++.+.+.+.+.
T Consensus 169 SA~~g~gI-~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGV-DELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTH-HHHHHHHHHHHH
T ss_pred ECcCCCCH-HHHHHHHHHhhc
Confidence 99999999 666666666553
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=2.1e-21 Score=166.16 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
.+|+++|.+|+|||||+|+|++..... .+....|.+.....+.+.+..+.+|||||.+. ++.....+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 489999999999999999999887432 22333455567788888999999999999653 45566778999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHH-HhhcCcccccCcccceeEEEeecC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV-GVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+.. ..+. .+..++ ... +++++||+
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----g~~--~~~~iSA~ 148 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----GFG--EPIPVSAE 148 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----SSC--SCEECBTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----CCC--CEEEEecc
Confidence 99999999999875543 3344444443 378999999999985320 1111 122111 111 68999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++.+.+.+.+.
T Consensus 149 ~g~gv-~~L~~~i~~~l~ 165 (439)
T 1mky_A 149 HNINL-DTMLETIIKKLE 165 (439)
T ss_dssp TTBSH-HHHHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHhcc
Confidence 99999 555555555443
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=7.6e-21 Score=158.59 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=116.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH---------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV---------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~ 120 (224)
...++|+++|.+|+|||||++++.+..+...+....|.+.....+...+..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 356799999999999999999999987543233445666666777777889999999997431 12223445
Q ss_pred cCCCEEEEEEECCCCC--CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 EDTDLLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++..+.+. ..+++++++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~~i 315 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-------EKGLNPIKI 315 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-------HTTCCCEEC
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-------hcCCCeEEE
Confidence 6799999999999887 6777788888776653 2799999999999976532222322221 112389999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|+|+ +++...+.+.+.
T Consensus 316 SA~~g~gi-~~l~~~i~~~l~ 335 (357)
T 2e87_A 316 SALKGTGI-DLVKEEIIKTLR 335 (357)
T ss_dssp BTTTTBTH-HHHHHHHHHHHH
T ss_pred eCCCCcCH-HHHHHHHHHHHH
Confidence 99999999 555556665554
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.86 E-value=4.2e-21 Score=165.15 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=95.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHH--------Hhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFW--------NTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~ 121 (224)
..++|+++|.+|+|||||+|+|.+...... +....|.++....+..++..+.+|||||+.++...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 457899999999999999999998763322 222334456667778889999999999987755332 34678
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH--HHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE--VGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
.+|++++|+|++++.++.+...+ ..+.... .++|+++|+||+|+.+....+. +.+. .. ++++++|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~--~~~i~vS 378 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TG--TEVIGIS 378 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HT--SCEEECB
T ss_pred cCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CC--CceEEEE
Confidence 99999999999999887643222 2222222 3799999999999987643321 1111 01 2899999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +++...+.+.+.
T Consensus 379 Aktg~GI-~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGI-DTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSH-HHHHHHHTHHHH
T ss_pred ECCCCCH-HHHHHHHHHHHh
Confidence 9999999 666666666654
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=2.9e-21 Score=166.34 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCch-hHH--------HHHHhhcc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQE-NVR--------RFWNTYFE 121 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-~~~--------~~~~~~~~ 121 (224)
.++|+++|.+|+|||||+|+|.+..+... +....|.++....+..++..+.+|||||.. .+. .....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 37999999999999999999998864322 233345567777888889999999999987 432 22344688
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++|+|+|++++.+++.. +.+..+ .++|+++|+||+|+.+....+++.+... . .++++++||+
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~--~~~~i~iSAk 387 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------T--DRHMVKISAL 387 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------C--STTEEEEEGG
T ss_pred cccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------C--CCcEEEEECC
Confidence 99999999999999887653 233222 3789999999999987655555554432 1 1279999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +++...+.+.+
T Consensus 388 tg~Gi-~eL~~~l~~~~ 403 (482)
T 1xzp_A 388 KGEGL-EKLEESIYRET 403 (482)
T ss_dssp GTCCH-HHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHH
Confidence 99999 55555655543
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.85 E-value=5.8e-21 Score=161.71 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=109.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCC--------------ce-----eEEEEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTE--------------GF-----NITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~--------------~~-----~~~~~~~~~~~~~l~D~~G~ 109 (224)
+..++|+++|++++|||||+++|++........+. .+. .. ...........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 46789999999999999999999985432200000 000 00 00000111278999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSS 185 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~ 185 (224)
+.+...+...+..+|++++|+|++++.++.+..+++..+... ...|+++++||+|+.+..... ++.+.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~-- 160 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG-- 160 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--
Confidence 999999888899999999999999988777777777665443 236899999999997652221 22222211
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. ....++++++||++|.|+ +++.+.+.+.+
T Consensus 161 ~--~~~~~~ii~vSA~~g~gi-~~L~~~l~~~l 190 (403)
T 3sjy_A 161 T--WAENVPIIPVSALHKINI-DSLIEGIEEYI 190 (403)
T ss_dssp S--TTTTCCEEECBTTTTBSH-HHHHHHHHHHS
T ss_pred h--CCCCCEEEEEECCCCcCh-HHHHHHHHHhC
Confidence 0 111348999999999999 56666665543
No 136
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.2e-20 Score=161.31 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=104.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+.... ..+.....|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4678999999999999999999964321 111112345555666677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---H---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---L---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|...+...+..+|++|+|+|++++.. + .+..+.+..... .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 999999999999999988888999999999999998642 1 123333333322 3566 9999999999642
Q ss_pred -C---CHHHHHhhc----CcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 -L---SAEEVGVAL----DLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 -~---~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
. ..+++.+.+ ....+.. ..+++++++||++|.|+++.
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~-~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNP-KKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccc-cCCeeEEEeeccCCcccccc
Confidence 1 122222221 1111100 01248999999999999653
No 137
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=2.9e-21 Score=160.78 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=94.7
Q ss_pred CCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCC
Q psy12173 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 86 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 155 (224)
|+|+....+..++..+.+|||+|+++++..+..++++++++|||+|+++ .+++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4566666777888999999999999999999999999999999999999 678999999999998876567
Q ss_pred CCcEEEEEeCCCCCC-----------------C-CCHHHHHhhc-----Cccccc-CcccceeEEEeecCCCCccccchH
Q psy12173 156 TVPILVIANKQDVPG-----------------A-LSAEEVGVAL-----DLSSIS-SRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 156 ~~piilv~nK~Dl~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++|++|++||+|+.+ . .+.++..+.+ ++.... .+. +.+++|||+++.||++.|.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~--~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP--LYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C--CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc--eEEEEEecCCchhHHHHHH
Confidence 899999999999852 1 3445544432 211111 123 3899999999999977666
Q ss_pred HHHHHHHH
Q psy12173 212 VEAEQAMY 219 (224)
Q Consensus 212 ~~i~~~l~ 219 (224)
.....++.
T Consensus 346 ~v~~~i~~ 353 (362)
T 1zcb_A 346 DVKDTILH 353 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=8.5e-21 Score=155.49 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=103.9
Q ss_pred CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcC
Q psy12173 83 LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQ 152 (224)
Q Consensus 83 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~ 152 (224)
..+|+|+....+..++..+.+|||+|+++++..|..++++++++|+|+|++ +.+++.+...++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 345678888888889999999999999999999999999999999999655 6677889999999998876
Q ss_pred CCCCCcEEEEEeCCCCCCC------------------CCHHHHHhhc-----CcccccCcccceeEEEeecCCCCccccc
Q psy12173 153 RLSTVPILVIANKQDVPGA------------------LSAEEVGVAL-----DLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 153 ~~~~~piilv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+.|+++++||+|+.++ .+.++..+.+ +......+ .+.+.+|||+++.||+..
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~--~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDK--IIYSHFTCATDTENIRFV 308 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTS--CEEEEECCTTCHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccC--CcEEEEEEeecCHHHHHH
Confidence 6678999999999998542 2334433321 11111112 348899999999999777
Q ss_pred hHHHHHHHHH
Q psy12173 210 SVVEAEQAMY 219 (224)
Q Consensus 210 ~~~~i~~~l~ 219 (224)
|......++.
T Consensus 309 F~~v~~~Il~ 318 (327)
T 3ohm_A 309 FAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666555554
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=1.8e-21 Score=164.95 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=104.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCe-EEEEEEcCCchhHHH-------HHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEY-TLNIFELGGQENVRR-------FWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~~~~-------~~~~~~ 120 (224)
...++|+++|+.++|||||++++++..+.. ......|.+.....+...+. .+.+|||||++.+.. ....++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 467899999999999999999999988642 22334466677777777654 999999999875432 234568
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++|+|+|+.. ......|+..+... ++|+++|+||+|+......+...+..+ .++++++++||
T Consensus 112 ~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~-------~~g~~v~~vSA 177 (423)
T 3qq5_A 112 YRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYES-------RYEAKVLLVSA 177 (423)
T ss_dssp TSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSC-------CTTCCCCCCSS
T ss_pred hcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHH-------HcCCCEEEEEC
Confidence 89999999999922 33344555555443 799999999999987654433332222 12348999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+ +++...+.+.+
T Consensus 178 ktg~gI-~eL~~~L~~~l 194 (423)
T 3qq5_A 178 LQKKGF-DDIGKTISEIL 194 (423)
T ss_dssp CCTTST-TTHHHHHHHHS
T ss_pred CCCCCH-HHHHHHHHHhh
Confidence 999999 55555655544
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=2.5e-20 Score=158.04 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=102.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEe---------------C--------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQK---------------G--------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l 103 (224)
...++|+++|+.++|||||+++|.+.. +..+.....|++..+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999999543 22211222255433332221 1 168999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC----CHHHHHh
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL----SAEEVGV 179 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~ 179 (224)
|||||++.+...+...+..+|++|+|+|++++.+..+..+.+..+... ...|+++++||+|+.+.. ..+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999988888888999999999999875444444444443322 235899999999997642 2344444
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+... ...+++++++||++|.|+ +++.+.+.+.+
T Consensus 163 ~l~~~----~~~~~~~i~vSA~~g~gi-~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGT----IAENAPIIPISAHHEANI-DVLLKAIQDFI 196 (408)
T ss_dssp HHTTS----TTTTCCEEEC------CH-HHHHHHHHHHS
T ss_pred HHhhc----CCCCCeEEEeeCCCCCCH-HHHHHHHHHhC
Confidence 44311 111248999999999999 56666665543
No 141
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=1.5e-20 Score=162.67 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=104.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~ 97 (224)
....++|+++|++++|||||+++|+.... ..+.....|.+.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 34679999999999999999999975511 01111233555566667778
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHH-----HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLP-----VAAMELKNLLGDQRLSTVPILVIANKQDVPGA- 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-----~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 171 (224)
+..+.+|||||++++...+..++..+|++|+|+|++++++.. ........+.... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 899999999999999999888999999999999999975421 2223333333321 23579999999999763
Q ss_pred -CCHHHHHhhcCcc--cccCcccceeEEEeecCCCCcccc
Q psy12173 172 -LSAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 172 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...+++.+.+... ........++|+++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1122222222110 001111134899999999999975
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=2e-21 Score=166.14 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=99.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCch--------hHHHHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQE--------NVRRFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~ 122 (224)
.++|+++|.+|+|||||+|+|.+..+.... ....|.+.......+.+..+.+|||||++ .+......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987754321 22233445566667778899999999985 566677778899
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|++|+|+|+.++.+.. ..++..++.. .++|+++|+||+|+.... .+ ..+... .... +++++||++
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~---~~~~~~--lg~~--~~~~iSA~~ 148 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN---IYDFYS--LGFG--EPYPISGTH 148 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C---CCSSGG--GSSC--CCEECBTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hh---HHHHHH--cCCC--CeEEEeCcC
Confidence 99999999999986654 3456665554 578999999999986541 11 111110 0111 689999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+ +++.+.+.+.+
T Consensus 149 g~gv-~~L~~~i~~~l 163 (436)
T 2hjg_A 149 GLGL-GDLLDAVAEHF 163 (436)
T ss_dssp TBTH-HHHHHHHHHTG
T ss_pred CCCh-HHHHHHHHHhc
Confidence 9999 55555555544
No 143
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=4.8e-20 Score=156.41 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEe---------------C--------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQK---------------G--------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l 103 (224)
...++|+++|+.++|||||+++|++.. +..+.....|++..+....+ . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999999543 23311222355544333222 0 268999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHh
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGV 179 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~ 179 (224)
|||||++.|.......+..+|++|+|+|++++.+..+..+.+..+... ...|+++++||+|+.+... .+++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888877788999999999999875344444444433322 2368999999999976421 223333
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+... ....++++++||++|.|+ +.+.+.+.+.+
T Consensus 165 ~l~~~----~~~~~~~i~vSA~~g~gi-~~L~~~l~~~~ 198 (410)
T 1kk1_A 165 FIEGT----VAENAPIIPISALHGANI-DVLVKAIEDFI 198 (410)
T ss_dssp HHTTS----TTTTCCEEECBTTTTBSH-HHHHHHHHHHS
T ss_pred HHHhc----CcCCCeEEEeeCCCCCCH-HHHHHHHHHhC
Confidence 33211 011248999999999999 55665665543
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=1.2e-19 Score=151.36 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc---------hhHHHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ---------ENVRRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~~d 124 (224)
.|+++|++|+|||||+|+|.+..+...+...+|.++....+.+++..+.+|||+|. +.++..+. .+..+|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCC
Confidence 49999999999999999999988655445667778888888888899999999996 33444444 478999
Q ss_pred EEEEEEECCCCC--CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc-Cc-ccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL-DL-SSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ..+..... .+ ...... ..+++++||
T Consensus 260 ~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~--~~~~~~~SA 335 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSP--IFDVIPISA 335 (364)
T ss_dssp EEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSC--EEEEEECBT
T ss_pred EEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCC--CCcEEEEEC
Confidence 999999999875 23322 223333333233578999999999997653 22111110 00 000001 227899999
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~ 220 (224)
++|.|+ +.+...+.+.+..
T Consensus 336 ~~g~gi-~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 336 LKRTNL-ELLRDKIYQLATQ 354 (364)
T ss_dssp TTTBSH-HHHHHHHHHHHHH
T ss_pred CCCcCH-HHHHHHHHHHhcc
Confidence 999999 6777777776654
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=2.7e-20 Score=159.63 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=99.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHHH--------HHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRRF--------WNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 121 (224)
..++|+++|++|+|||||+|+|.+..+....... .|.++....+..++.++.+|||||..++... ...+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4578999999999999999999987543222222 3334555567778899999999998664432 233578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... ...... ..++++++||+
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~~~---~~~~~i~iSAk 366 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEYPE---NITQIVHTAAA 366 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCCCT---TCCCEEEEBTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHHhc---cCCcEEEEECC
Confidence 9999999999999866544 3344433 247999999999997652211 111111 22389999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++...+.+.+.
T Consensus 367 tg~Gi-~eL~~~i~~~~~ 383 (462)
T 3geh_A 367 QKQGI-DSLETAILEIVQ 383 (462)
T ss_dssp TTBSH-HHHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHHh
Confidence 99999 666666666554
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=7.9e-20 Score=156.35 Aligned_cols=162 Identities=19% Similarity=0.094 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH------------HH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF------------WN 117 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------------~~ 117 (224)
..++|+++|++|+|||||++++.+..+... .....|.+.....+.+++..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 468999999999999999999998874321 12233444556677888889999999998543321 12
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+... ..+...... .++|+++|+||+|+.+.. ..++..+.+........ .+++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID--YSPL 331 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT--TSCE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC--CCcE
Confidence 35678999999999998766554 333444433 479999999999997642 23333322211111111 2389
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 332 ~~~SA~~g~gv-~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNI-DRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSH-HHHHHHHHHHHHH
T ss_pred EEEECCCCCCH-HHHHHHHHHHHHh
Confidence 99999999999 5555566666554
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.6e-20 Score=161.44 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=101.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCC--------chhHHHHHHhh
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGG--------QENVRRFWNTY 119 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~ 119 (224)
.+..++|+++|.+|+|||||+|+|.+..+.... ....|.+.......+.+..+.+||||| ++.++.....+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 355789999999999999999999987754221 222233344555666778999999999 77788888888
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
++.+|++|+|+|..++ +.....++..++.. .++|+++|+||+|+.+.. .+..+...+ ... .++++|
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----g~~--~~~~iS 165 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----GFG--EPYPIS 165 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-----SSS--SEEECC
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc-----CCC--ceEEee
Confidence 9999999999998875 44555666676665 589999999999986431 111111111 111 567999
Q ss_pred cCCCCccccchHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~ 217 (224)
|++|.|+ +++.+.+.+.
T Consensus 166 A~~g~gv-~~L~~~i~~~ 182 (456)
T 4dcu_A 166 GTHGLGL-GDLLDAVAEH 182 (456)
T ss_dssp TTTCTTH-HHHHHHHHTT
T ss_pred cccccch-HHHHHHHHhh
Confidence 9999999 4455455443
No 148
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=9.2e-20 Score=149.89 Aligned_cols=136 Identities=19% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+|||+|+++++..|..++++++++|+|+|++ +.+++.+...++..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45678888888889999999999999999999999999999999999998 67889999999999998766
Q ss_pred CCCCcEEEEEeCCCCCCC-----------------CCHHHHHhhc-----------CcccccC---------cccceeEE
Q psy12173 154 LSTVPILVIANKQDVPGA-----------------LSAEEVGVAL-----------DLSSISS---------RQHRIKLI 196 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~~-----------------~~~~~~~~~~-----------~~~~~~~---------~~~~~~~~ 196 (224)
..++|++|++||+|+..+ .+.++..+.+ +...... ....+.+.
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 678999999999998542 1222322211 1111110 00235899
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||+...||+..|....+.++.
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999997777666555554
No 149
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=2.6e-19 Score=152.93 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------C-----------------------CCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS----------H-----------------------NLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------~-----------------------~~~~t~~~~~~~~~~ 96 (224)
...++|+++|++++|||||+++|+....... . ....|++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3568999999999999999999986531000 0 011233344455666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--H
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--A 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 174 (224)
++..+.+|||||+++|...+..++..+|++|+|+|++++.. ....+++...... ...|+++|+||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 78899999999999999888888999999999999998753 3344444433222 2246999999999976311 1
Q ss_pred HHHHhhcCc--ccccCcccceeEEEeecCCCCccccc
Q psy12173 175 EEVGVALDL--SSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 175 ~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+++.+.+.. .........++++++||++|.|+++.
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112211110 00000011248999999999999764
No 150
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=3.7e-20 Score=158.18 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=101.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------CCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSLS-----------------------------HNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 98 (224)
+..++|+++|++++|||||+++|+.. .+... .....|++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 22210 012345555556677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHH-------HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV-------AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|...+..++..+|++|+|+|+++ .+++. ..+.+...... .-.|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999988889999999999999999 45553 23333222221 22469999999999763
Q ss_pred -CCH-------HHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 -LSA-------EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+. +++.+.+....+... .++++++||++|.|+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTN--KVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCT--TCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcC--CceEEEeecccCcccccc
Confidence 111 222222211111111 248999999999999654
No 151
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=6.1e-20 Score=154.14 Aligned_cols=84 Identities=31% Similarity=0.547 Sum_probs=75.6
Q ss_pred CCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCC
Q psy12173 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 86 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 155 (224)
|+|.....+.+++..+.+|||+|+++++..+..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4456666777788999999999999999999999999999999999999 889999999999998876667
Q ss_pred CCcEEEEEeCCCCC
Q psy12173 156 TVPILVIANKQDVP 169 (224)
Q Consensus 156 ~~piilv~nK~Dl~ 169 (224)
+.|++|++||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 89999999999984
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=1.7e-21 Score=169.27 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=110.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.++|+++|++++|||||+++|.+..+........|..+....+.. ++..+.+|||||++.+...+..+++.+|++|+|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4578999999999999999999987655422223344444444544 456899999999999999888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|++++..... ...+..+.. .++|+++++||+|+.+.. ...++.+ ..... ......++++++||++|.|+
T Consensus 83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~-e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVC-EDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCC-CCSSSSEEECCCCSSSSCSS
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-hhhhH-HhcCCCceEEEEECCCCCCc
Confidence 99999755433 344444433 478999999999997531 1122222 11111 11122358999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
+++...+...+
T Consensus 156 -~eLle~I~~l~ 166 (537)
T 3izy_P 156 -MALAEATIALA 166 (537)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHhh
Confidence 55555555443
No 153
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=3.3e-21 Score=166.09 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|++++|||||+++|....+........|.......+.+++..+.+|||||++.|...+...+..+|++++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 45799999999999999999999765443222223333334445556778999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc--ccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR--QHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~ 208 (224)
|++++... +..+.+..... .++|+++++||+|+.+.. .+++.+.+........ ...++++++||++|.|+++
T Consensus 83 da~~g~~~-qT~e~l~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 83 AADDGVMP-QTIEAIQHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp ETTTBSCT-TTHHHHHHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred ecccCccH-HHHHHHHHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99884322 22233333322 478999999999997531 1122222211111111 1125899999999999954
Q ss_pred chH
Q psy12173 209 VSV 211 (224)
Q Consensus 209 ~~~ 211 (224)
.+.
T Consensus 157 Lle 159 (501)
T 1zo1_I 157 LLD 159 (501)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=7e-19 Score=138.72 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=83.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCceeEEEEEeCCeEEEEEEcCCc-----------hhHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEGFNITILQKGEYTLNIFELGGQ-----------ENVRRF 115 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~D~~G~-----------~~~~~~ 115 (224)
....++|+++|++|+|||||++++++..+...... ..|..+....+.+++..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999887553222 33455666677888999999999993 345555
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 171 (224)
....++.+|++|+|+|+++.... ...++..+..... ....|+++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 56667889999999999876442 2233333322100 024699999999998765
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-20 Score=143.67 Aligned_cols=128 Identities=25% Similarity=0.379 Sum_probs=93.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhcc----CCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFE----DTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----~~d 124 (224)
...++|+++|++|+|||||++++.+..+... ....++.. ..+....+.+|||||++.+...+..++. .+|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 4568999999999999999999999875431 01122222 1225678999999999877655544444 489
Q ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCCHHHHHhhcC
Q psy12173 125 LLVFVVDSA-DPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALSAEEVGVALD 182 (224)
Q Consensus 125 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 182 (224)
++++|+|++ +.+++.....|+..+.... ...+.|+++|+||+|+.+....+++.+.++
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999999 7888888888888877542 125799999999999988877766665553
No 156
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=1.4e-19 Score=151.38 Aligned_cols=146 Identities=9% Similarity=0.046 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|+++|++++|||||+++|+ ....|++.....+..++..+.+|||||+++|.......+..+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 99999999999999999998 22356666677777788899999999999998877777899999999999 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEe-CCCCCCCCCH----HHHHhhcCcccccCcccceeEEE--eecCC---
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPI-LVIAN-KQDVPGALSA----EEVGVALDLSSISSRQHRIKLIA--TQAPS--- 202 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~--- 202 (224)
+ ..+.+..+++..+.. .++|. ++++| |+|+ +.... +++.+.++... .. .+++++ +||++
T Consensus 94 ~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--~~--~~~ii~~~~SA~~~~~ 163 (370)
T 2elf_A 94 Q-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--LQ--DWECISLNTNKSAKNP 163 (370)
T ss_dssp T-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--TT--TCEEEECCCCTTSSST
T ss_pred C-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--CC--ceEEEecccccccCcC
Confidence 4 455566666555443 26776 89999 9999 43211 23333332111 11 238999 99999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+ +++.+.+.+.+.
T Consensus 164 g~gi-~~L~~~l~~~~~ 179 (370)
T 2elf_A 164 FEGV-DELKARINEVAE 179 (370)
T ss_dssp TTTH-HHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHhhcc
Confidence 9999 555566665543
No 157
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=2.3e-19 Score=146.23 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=101.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch-hHHH--------HHHhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE-NVRR--------FWNTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~~ 120 (224)
+..+|+++|++|+|||||++++.+..+...+... .|.......+..++.++.+|||||+. .... .....+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4458999999999999999999998754322222 23233344566678899999999987 3322 123457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... .+++.+.++. +........++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~--l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQF--LASQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHH--HHTTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHH--HHHhcCcCceEEEEC
Confidence 88999999999977 34444555554443 47899999999999762 2222222110 000000126999999
Q ss_pred CCCCccccchHHHHH
Q psy12173 201 PSNLHHLHVSVVEAE 215 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~ 215 (224)
++|.|+ +.+.+.+.
T Consensus 157 ~~g~~v-~~l~~~i~ 170 (301)
T 1ega_A 157 ETGLNV-DTIAAIVR 170 (301)
T ss_dssp TTTTTH-HHHHHHHH
T ss_pred CCCCCH-HHHHHHHH
Confidence 999999 45544444
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=160.89 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=105.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-------------------------------NLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+........ ....|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 46789999999999999999999976432210 02335555666677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CH---HHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KL---PVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.+|||||++.+...+..++..+|++|+|+|++++. ++ ......+... ... ...|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 99999999999999999888999999999999998741 11 1222222222 221 234699999999997631
Q ss_pred --CHHHHHhhcCcc--cccCcccceeEEEeecCCCCccccc
Q psy12173 173 --SAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 173 --~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
..+++.+.+... ........++++++||++|.|+++.
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 122222222100 0001111348999999999999654
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=2.7e-19 Score=142.76 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=101.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhH-----------HHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENV-----------RRFW 116 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~-----------~~~~ 116 (224)
...++|+++|++|+|||||++++++.. +....... .|.......+.+++..+.+|||||+..+ ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999877 33311222 3445566667788899999999997543 2233
Q ss_pred HhhccCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEe-CCCCCCCCCHHH---------HHhhcCccc
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIAN-KQDVPGALSAEE---------VGVALDLSS 185 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~~~~~~---------~~~~~~~~~ 185 (224)
...++.+|++++|+|+++...... ...++....... ...|.++++| |+|+... ...+ +.+..+.
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~-- 174 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA-- 174 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH--
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH--
Confidence 446789999999999986322211 223333332211 1456666666 9999754 3332 1111111
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+.+....+++||++|.|+ +++...+.+.+.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv-~~l~~~i~~~~~ 207 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQV-KELMDCIEDLLM 207 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHH-HHHHHHHHHHHH
Confidence 111111001179999999999 555556655554
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.80 E-value=4.5e-19 Score=156.06 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------------CCCCCCCceeEEEEEeC-----CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSLS-------------HNLKPTEGFNITILQKG-----EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~-------------~~~~~t~~~~~~~~~~~-----~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+++|+... +... .....|+......+.+. +..+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 1100 00112222333344443 3789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCccccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 187 (224)
++...+...++.+|++|+|+|++++.+......|.... . .++|+++++||+|+.+.... +++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 99998888899999999999999988877666555443 2 37899999999999875322 2333333221
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.. +++++||++|.|+ +++.+.+.+.
T Consensus 155 --~~--~vi~vSAktg~GI-~~Ll~~I~~~ 179 (599)
T 3cb4_D 155 --AT--DAVRCSAKTGVGV-QDVLERLVRD 179 (599)
T ss_dssp --CT--TCEEECTTTCTTH-HHHHHHHHHH
T ss_pred --cc--eEEEeecccCCCc-hhHHHHHhhc
Confidence 11 5899999999999 5555555444
No 161
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=3.8e-20 Score=159.31 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCCCCCceeEEEEEe
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISS--GNTSL-----------------------------SHNLKPTEGFNITILQK 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 96 (224)
.....++|+++|+.++|||||+++|+. +.+.. +.....|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 345678999999999999999999974 21110 00123455555556667
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CHH---HHHHHHHHHHhcCCCCCCc-EEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KLP---VAAMELKNLLGDQRLSTVP-ILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 169 (224)
++..+.+|||||+++|...+...+..+|++|+|+|++++. +|+ ...+.+.... . .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cCCCEEEEEEECccCC
Confidence 7899999999999999988888899999999999999862 222 2222222222 2 3676 99999999996
Q ss_pred CC-CCHH-------HHHhhcCcc-cccCcccceeEEEeecCCCCccccch
Q psy12173 170 GA-LSAE-------EVGVALDLS-SISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 170 ~~-~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.. .+.+ ++.+.+... .+. ...+++++++||++|.|+++.+
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~-~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCC-HHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCC-ccCCceEEeccccccccccccc
Confidence 52 1221 222222110 000 0113489999999999997654
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=6.9e-19 Score=154.70 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=103.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCCCCCceeEEEEEeC-----CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL-------------SHNLKPTEGFNITILQKG-----EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-------------~~~~~~t~~~~~~~~~~~-----~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+++|+... +.. +.....|+......+.+. ...+.+|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 56799999999999999999998531 110 000112222223334332 3789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH----HHhhcCcccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE----VGVALDLSSI 186 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~ 186 (224)
++.......+..+|++|+|+|++++.+......|.... . .++|+++++||+|+.+.. .++ +.+.++.
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~--- 155 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGL--- 155 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCC---
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCC---
Confidence 99988888899999999999999998877666555443 2 378999999999997653 333 3332222
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... +++++||++|.|+ +++.+.+.+.
T Consensus 156 --~~~--~vi~vSAktg~GI-~~Lle~I~~~ 181 (600)
T 2ywe_A 156 --DPE--EAILASAKEGIGI-EEILEAIVNR 181 (600)
T ss_dssp --CGG--GCEECBTTTTBSH-HHHHHHHHHH
T ss_pred --Ccc--cEEEEEeecCCCc-hHHHHHHHHh
Confidence 112 6899999999999 5555555443
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=7.2e-19 Score=139.47 Aligned_cols=168 Identities=11% Similarity=0.102 Sum_probs=100.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC--CCCceeEEEEEeCCeEEEEEEcCCc--------hhHHHHHHh
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK--PTEGFNITILQKGEYTLNIFELGGQ--------ENVRRFWNT 118 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~ 118 (224)
....++|+++|.+|+|||||+|++++..+....... .|..........++..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 356789999999999999999999998755422211 3445666777788999999999995 322222222
Q ss_pred ----hccCCCEEEEEEECCCCCCHH-HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc--Cccc
Q psy12173 119 ----YFEDTDLLVFVVDSADPSKLP-VAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS--SRQH 191 (224)
Q Consensus 119 ----~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 191 (224)
..+.+|++|+|+|+++....+ ...+++...... ...+.|++++.||.|+.+. ..++........... ...+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHc
Confidence 248999999999998632211 123333333322 1136899999999999764 222221111000000 0111
Q ss_pred ceeEEEeecCC-----CCccccchHHHHHHHHH
Q psy12173 192 RIKLIATQAPS-----NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 192 ~~~~~~~Sa~~-----~~gv~~~~~~~i~~~l~ 219 (224)
+..++.+++.. +.|+ +++...+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v-~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQV-EQLLGMVEGLVL 207 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccccHHHH-HHHHHHHHHHHH
Confidence 22555666554 4677 666667776665
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=3.7e-19 Score=150.72 Aligned_cols=149 Identities=18% Similarity=0.122 Sum_probs=102.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--------NTSLS---------HNLKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--------~~~~~---------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
...++|+++|++++|||||+++|.+. .+... .....|.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999873 22110 01123444444555667789999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCcccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSI 186 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 186 (224)
...+...+..+|++|+|+|++++.. ....+++..+.. .++| +++++||+|+.++.. .+ ++.+.++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888888999999999999998754 344555554433 3677 899999999975311 11 22222211111
Q ss_pred cCcccceeEEEeecCCCCc
Q psy12173 187 SSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~g 205 (224)
... .++++++||++|.|
T Consensus 164 ~~~--~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGD--EVPVIRGSALLALE 180 (405)
T ss_dssp CTT--TSCEEECCHHHHHH
T ss_pred ccc--CCCEEEccHHHhhh
Confidence 111 23899999999987
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=3.3e-19 Score=155.22 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=89.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-----------------CC-----CCCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT-----------------SL-----SHNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~-----------------~~-----~~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
...+|+++|++|+|||||+++|+.... .. ......|.......+.+++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999962110 00 00123355566777888899999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
++++......+++.+|++|+|+|++++.+.... ..+..+.. .++|+++++||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999998888899999999999999998665544 33443332 37899999999999765
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=1.1e-18 Score=150.01 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
+..++|+++|++++|||||+++|++. .+.. +.....|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 1111 0013356666666777788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CHH---HHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KLP---VAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|.......+..+|++|+|+|++++. +|+ +..+.+... .. .+.| +++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999998888899999999999999752 111 233333322 22 2555 9999999999742
Q ss_pred --CCHHHHHh----hcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 --LSAEEVGV----ALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+++.+ .+....+... .++++++||++|.|+++.
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~--~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPK--TVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGG--GCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc--CceEEEeecccCcCcccc
Confidence 11112222 1111111101 248999999999999643
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.78 E-value=5.1e-19 Score=149.48 Aligned_cols=147 Identities=16% Similarity=0.043 Sum_probs=98.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------CCCC---------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN-------TSLS---------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~~---------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
.++|+++|++++|||||+++|.... +... .....|++.....+..++..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5799999999999999999998731 1100 01122333334445556789999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhhcCcccccCc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-A----EEVGVALDLSSISSR 189 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~ 189 (224)
+...+..+|++|+|+|++++... +..+.+..+. . .++| +++++||+|+.++.. . +++.+.++...+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~-~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMP-QTREHLLLAR-Q---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHH-H---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHH-H---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999997543 3344443333 2 3677 789999999975311 1 122222211111111
Q ss_pred ccceeEEEeecCCCCc
Q psy12173 190 QHRIKLIATQAPSNLH 205 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~g 205 (224)
.++++++||++|.|
T Consensus 158 --~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 158 --ETPIIVGSALCALE 171 (397)
T ss_dssp --TSCEEECCHHHHHT
T ss_pred --cCcEEEeehhhccc
Confidence 23899999999875
No 168
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=1.4e-19 Score=150.21 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=88.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 166 (224)
+...+.+|||+|+++++..+..++++++++|+|+|++ +.+++.+...|+..+.......+.|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 778899999999999876555689999999999
Q ss_pred CCCCC----CC-------------------HHHHHhhcCcc--cc---c--C--cccceeEEEeecCCCCccccchHHHH
Q psy12173 167 DVPGA----LS-------------------AEEVGVALDLS--SI---S--S--RQHRIKLIATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 167 Dl~~~----~~-------------------~~~~~~~~~~~--~~---~--~--~~~~~~~~~~Sa~~~~gv~~~~~~~i 214 (224)
|+.++ .. .++..+..... .. . . ....+.+++|||+++.||++.|...+
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98432 00 12222211100 00 0 0 01123679999999999977776655
Q ss_pred HHHHH
Q psy12173 215 EQAMY 219 (224)
Q Consensus 215 ~~~l~ 219 (224)
..++.
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=7e-18 Score=136.99 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=97.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCC----------------------Ccee--------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----NLKPT----------------------EGFN-------------- 90 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----~~~~t----------------------~~~~-------------- 90 (224)
..++|+++|.+|+|||||+++|++..+.+.. ...|+ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998864211 11121 0000
Q ss_pred -----------EEEEEe-CCeEEEEEEcCCch-------------hHHHHHHhhccCCCEEE-EEEECCCCCCHHHHHHH
Q psy12173 91 -----------ITILQK-GEYTLNIFELGGQE-------------NVRRFWNTYFEDTDLLV-FVVDSADPSKLPVAAME 144 (224)
Q Consensus 91 -----------~~~~~~-~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~ 144 (224)
...+.. ....+.+|||||.. .+......+++.++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000111 13689999999953 45566677788888776 79999886443333233
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+..+ .. .+.|+++|+||+|+.+... ..+. ++..........++++++||++|.|++ ++...+.+
T Consensus 185 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~-~l~~~l~~ 249 (299)
T 2aka_B 185 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKK-DITAALAA 249 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCCBCTTSCB-CHHHHHHH
T ss_pred HHHh-CC---CCCeEEEEEEccccCCCCchHHHH---HhCCcCcCCCCcEEEECCChhhccccc-cHHHHHHH
Confidence 3333 22 4789999999999976522 1222 111100111112378999999999994 44444443
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=5.9e-20 Score=162.07 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=82.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCCCCCceeEEEEEeC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN-------------------------------TSLSHNLKPTEGFNITILQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~ 97 (224)
....++|+++|++++|||||+++|+... +..+.....|.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999996421 000001123444555556667
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CH---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KL---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 170 (224)
+..+.+|||||++.|...+...+..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 789999999999998877777788999999999999753 11 222223322222 2555 999999999975
Q ss_pred C--CCH----HHHHhhc-CcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 A--LSA----EEVGVAL-DLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ~--~~~----~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
. ... +++.+.+ ....+ ....++++++||++|.|+++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~--~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGF--KTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCC--CGGGEEEEEECSSSCSSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHhhCC--CccceEEEEEecccCccccc
Confidence 2 111 2222222 11111 11234899999999999964
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.76 E-value=1.7e-18 Score=152.42 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=105.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEE----------------eCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ----------------KGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~----------------~~~~~~~l~D~~G~~~~ 112 (224)
+.++|+++|++++|||||+++|.+..+.... ...++++....... +....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999976543211 12334444333321 11236999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH--------------H---
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA--------------E--- 175 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------~--- 175 (224)
...+...++.+|++|+|+|++++-.-. ....+..+.. .++|+++++||+|+...... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~q-T~e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHh-HHHHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 888888889999999999999953322 2233333322 47899999999999653210 1
Q ss_pred --------HHHhhc---Cccc-----ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 --------EVGVAL---DLSS-----ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 --------~~~~~~---~~~~-----~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++.+.+ .+.. .......++++++||++|.|+ +++.+.+...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI-~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGI-PELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCc-hhHHHHHHhhcc
Confidence 111111 1100 001122348999999999999 555656655443
No 172
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=3.4e-18 Score=137.57 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=82.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCceeEEEEEe--CC--eEEEEEEcCCc-------hhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-------KPTEGFNITILQK--GE--YTLNIFELGGQ-------ENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-------~~t~~~~~~~~~~--~~--~~~~l~D~~G~-------~~~ 112 (224)
..++|+++|.+|+|||||+|+|+....... .+ .+|++........ ++ ..+.+|||||. +.+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 468999999999999999999887653331 22 5566655555443 33 58999999997 223
Q ss_pred HHHH-------Hhhcc-------------CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 113 RRFW-------NTYFE-------------DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 113 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 3222 22222 378999999877643223233333333 22 79999999999986542
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
......+.+.. .+ ...+++++++||+++.|+++ +...+.
T Consensus 161 e~~~~~~~i~~-~l--~~~~i~v~~~sa~~~~~~~~-l~~~l~ 199 (274)
T 3t5d_A 161 ECQQFKKQIMK-EI--QEHKIKIYEFPETDDEEENK-LVKKIK 199 (274)
T ss_dssp HHHHHHHHHHH-HH--HHTTCCCCCC------------CHHHH
T ss_pred HHHHHHHHHHH-HH--HHcCCeEEcCCCCCChhHHH-HHHHHh
Confidence 22222221110 01 11223789999999999944 433443
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.74 E-value=1.2e-17 Score=154.05 Aligned_cols=148 Identities=17% Similarity=0.073 Sum_probs=98.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-------CCC---------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-------TSL---------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~---------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|++++|||||+++|++.. +.. +.....|+......+..++..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457899999999999999999998631 100 0011123333333455567899999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-A----EEVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~~~~~~~~~~~~ 187 (224)
..+...+..+|++|+|+|++++... +..+++..+.. .++| +|+++||+|+.++.. . +++.+.+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888889999999999999987433 34445544433 3677 899999999976311 1 1222222211111
Q ss_pred CcccceeEEEeecCCCC
Q psy12173 188 SRQHRIKLIATQAPSNL 204 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~ 204 (224)
.. .++++++||++|.
T Consensus 449 ~~--~vp~IpvSAktG~ 463 (1289)
T 3avx_A 449 GD--DTPIVRGSALKAL 463 (1289)
T ss_dssp TT--TCCEEECCSTTTT
T ss_pred cc--ceeEEEEEeccCC
Confidence 11 2489999999994
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=2.7e-17 Score=143.24 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=98.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------C------CCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL--------------S------HNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
+.++|+++|++++|||||+++|+... +.. . .....|.......+.+++..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999999632 100 0 0111233344556777889999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSS 185 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~ 185 (224)
++++......++..+|++|+|+|++++.... ....+.. ... .++|+++++||+|+..... .+++.+.++...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~-~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~ 166 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV-TRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIGC 166 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH-HTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH-HHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCc
Confidence 9998887778899999999999999874322 2233332 222 4789999999999977533 344555554322
Q ss_pred ccCcccceeEEEeecCCCCccc
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.. ..+-.+|++++.|+.
T Consensus 167 ~~-----~~~pi~sa~~~~Gv~ 183 (529)
T 2h5e_A 167 AP-----ITWPIGCGKLFKGVY 183 (529)
T ss_dssp EE-----SEEEESCGGGCCEEE
T ss_pred cc-----eecceecccCcceee
Confidence 11 123336777766663
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.73 E-value=1.9e-17 Score=132.35 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHHH-------HHhhc-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRRF-------WNTYF- 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~- 120 (224)
+..++|+++|++|+|||||++++++..+.....+.+ |.......+..++..+.+|||||++++... ...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 357899999999999999999999988533223333 445566667788999999999998654321 11112
Q ss_pred -cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCC-CCCCcEEEEEeCCCCCC
Q psy12173 121 -EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQR-LSTVPILVIANKQDVPG 170 (224)
Q Consensus 121 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 170 (224)
..+|++++|++++... +... ..++..+..... ....|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 3789999999998764 4433 344444433211 01249999999999953
No 176
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=143.80 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=78.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------CCCCCceeEEEEEe--CC--eEEEEEEcCCc-------hhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN-------LKPTEGFNITILQK--GE--YTLNIFELGGQ-------ENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~-------~~~ 112 (224)
..++|+++|++|+|||||+++|.+........ ..+|.+........ .+ ..+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987654222111 11344443333322 33 47999999998 444
Q ss_pred HHHHH-------hhccC-------------CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 113 RRFWN-------TYFED-------------TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 113 ~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.. .+++. +|+++++++.+ ..++......+...+. .++|+|+|+||+|+....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCHH
Confidence 33332 33332 23455555532 3456665543333322 478999999999997642
Q ss_pred CHH----HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 SAE----EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
... ++.+.++ ..+++++++||++|.| ++.|...+......
T Consensus 191 ev~~~k~~i~~~~~-------~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 191 ERERLKKRILDEIE-------EHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHTT-------CC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-------HCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 222 2222222 1234899999999998 67777666555443
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.72 E-value=1.5e-17 Score=140.57 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=114.4
Q ss_pred cccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchhH-------
Q psy12173 41 FEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV------- 112 (224)
Q Consensus 41 ~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~------- 112 (224)
++.....+-.....|+++|++|+|||||++++.+......+....|...+...+..++ ..+.+||+||..+.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 3444444444557899999999999999999998764332233445556666666665 88999999997421
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 191 (224)
........+.++.+++++|++ .+++.++..+..++..... ....|.++++||+|+......+++.+.+. ....
T Consensus 226 ~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~ 299 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGL 299 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTS
T ss_pred hHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCC
Confidence 111222356799999999998 5567766666665554321 13589999999999976422223333221 1222
Q ss_pred ceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 192 RIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++.+||+++.|+ +++...+.+.+..
T Consensus 300 --~vi~iSA~~g~gi-~eL~~~i~~~l~~ 325 (416)
T 1udx_A 300 --AVLPVSALTGAGL-PALKEALHALVRS 325 (416)
T ss_dssp --CEEECCTTTCTTH-HHHHHHHHHHHHT
T ss_pred --eEEEEECCCccCH-HHHHHHHHHHHHh
Confidence 8999999999999 6666677666654
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.70 E-value=5.9e-17 Score=124.73 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=94.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCCeEEEEEEcCCch----------hHHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGEYTLNIFELGGQE----------NVRRFW 116 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 116 (224)
.....+|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ .+.+|||||.. .++...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~--~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLA--RTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccc--cccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3456799999999999999999999877433 223333321 22233333 67899999973 233333
Q ss_pred Hhhc---cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCc
Q psy12173 117 NTYF---EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSR 189 (224)
Q Consensus 117 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 189 (224)
..++ ..++++++++|++++.+... ..+..+... .+.|+++++||+|+..... .......+. ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~-----~~ 169 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL-----AF 169 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-----GG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-----hc
Confidence 3333 57899999999998766532 222233332 4789999999999865411 112222221 11
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+.++++||+++.|+ +++...+.+.+.
T Consensus 170 ~~~~~~~~~Sal~~~~~-~~l~~~l~~~~~ 198 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGV-DKLRQKLDTWFS 198 (210)
T ss_dssp CSCEEEEECBTTTTBSH-HHHHHHHHHHHC
T ss_pred CCCCceEEEeecCCCCH-HHHHHHHHHHHh
Confidence 11237899999999999 666666665543
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.70 E-value=2.3e-16 Score=141.52 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=88.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSL----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|++|+|||||+++|+.. .+.. .....+|+......+.+++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45789999999999999999999842 1100 00223556666677778899999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+...+..+++.+|++|+|+|++++.+......| ..+.. .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 998888889999999999999998776655443 33333 37999999999999765
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=1.8e-16 Score=129.73 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=75.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCC-ceeE----------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN----LKPTE-GFNI---------------------------------- 91 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----~~~t~-~~~~---------------------------------- 91 (224)
..++|+++|.+|+|||||+++|++..+.+... ..++. ....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45799999999999999999999988622111 01100 0000
Q ss_pred ------------------EE---EEeCCeEEEEEEcCCchh-------------HHHHHHhhccCCCEEEEEEECCCCCC
Q psy12173 92 ------------------TI---LQKGEYTLNIFELGGQEN-------------VRRFWNTYFEDTDLLVFVVDSADPSK 137 (224)
Q Consensus 92 ------------------~~---~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s 137 (224)
.. ......++.+|||||... +......+++.+|++++|+|.++...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00 111346799999999753 44566777899999999999854332
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 138 LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+...+.. .+.|+++|+||+|+...
T Consensus 183 ~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 183 ANSDALQLAKEVDP---EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp TTCSHHHHHHHHCS---SCSSEEEEEECTTSSCS
T ss_pred hhhHHHHHHHHhCC---CCCcEEEEEcCcccCCc
Confidence 11111122222222 47899999999999765
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=2.2e-16 Score=141.79 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=102.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeE--------EEEE-------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNI--------TILQ------------------------- 95 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~--------~~~~------------------------- 95 (224)
...++|+++|.+|+|||||+|+|.+..+.+.+. .|++. +.. ....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~-~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDV-NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC-CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC-CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 457899999999999999999999887544222 23221 000 0010
Q ss_pred ---------------------eCC----eEEEEEEcCCchhH---HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHH
Q psy12173 96 ---------------------KGE----YTLNIFELGGQENV---RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN 147 (224)
Q Consensus 96 ---------------------~~~----~~~~l~D~~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 147 (224)
... ..+.+|||||.... ......+++.+|++|+|+|++++.+..+...+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 000 36899999997653 34556678999999999999998777665443322
Q ss_pred HHhcCCCCCCcEEEEEeCCCCCCCC-----CHHH-------HHhhcC--cccccC----cccceeEEEeecC--------
Q psy12173 148 LLGDQRLSTVPILVIANKQDVPGAL-----SAEE-------VGVALD--LSSISS----RQHRIKLIATQAP-------- 201 (224)
Q Consensus 148 ~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~-------~~~~~~--~~~~~~----~~~~~~~~~~Sa~-------- 201 (224)
... .+.|+++|+||+|+.... ..++ +.+.+. +..... ..+..+++++||+
T Consensus 226 -l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 -IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp -TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred -HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 222 367899999999986431 1111 211110 000000 0122379999999
Q ss_pred ------CCCccccchHHHHHHHH
Q psy12173 202 ------SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ------~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +.+...+.+.+
T Consensus 302 ~~~~~~~~~Gi-~~L~~~L~~~l 323 (695)
T 2j69_A 302 NPQADLDGTGF-PKFMDSLNTFL 323 (695)
T ss_dssp CTTCCCTTSSH-HHHHHHHHHHH
T ss_pred CchhhhhccCH-HHHHHHHHHHH
Confidence 99999 66666666655
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.68 E-value=1.2e-15 Score=136.42 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=86.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--C---------C-------CCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--H---------N-------LKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~---------~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
...+|+++|+.|+|||||+++|........ . . ...+.......+.+.+..+.+|||||++++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 467999999999999999999995432210 0 0 112334455566678899999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
......+++.+|++++|+|+++..... ...++..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 988888899999999999988874433 3344544443 378999999999998
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=6.4e-16 Score=128.91 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=94.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-----------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF----------------------------------------- 89 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 89 (224)
..++|+++|++|+|||||+++|.+..+.+......|...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999876332111111000
Q ss_pred -----------e--EEEEE-eCCeEEEEEEcCCchhH-------------HHHHHhhccCCCEEEEEEECCCCCCHHHHH
Q psy12173 90 -----------N--ITILQ-KGEYTLNIFELGGQENV-------------RRFWNTYFEDTDLLVFVVDSADPSKLPVAA 142 (224)
Q Consensus 90 -----------~--~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 142 (224)
. ...+. .....+.+|||||...+ ......+++.+|++|+|+|.++.+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 0 00011 12356899999997765 56667789999999999998765443321
Q ss_pred HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 143 MELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+ ..+.......+.|+++|+||+|+.+.. ...+..+... ...+.+|+++|++++.++++.
T Consensus 192 -~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 192 -A-IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRS------FKLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp -H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSS------SCCSSCCEEECCCCHHHHHTT
T ss_pred -H-HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCcc------ccccCCeEEEEECChHHhccC
Confidence 1 222222222578999999999997642 2222222111 111228999999999888544
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.66 E-value=1.8e-15 Score=121.31 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHH-------HHHHhh--c
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVR-------RFWNTY--F 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~--~ 120 (224)
..++|+++|.+|+|||||+++|++..+....... .|.......+..++..+.+|||||+.++. .....+ .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 4689999999999999999999988754322222 23334445566788999999999986542 122222 3
Q ss_pred cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC
Q psy12173 121 EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQR-LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 171 (224)
+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999999764 34443 344444433211 012699999999999653
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=2.2e-15 Score=135.35 Aligned_cols=117 Identities=19% Similarity=0.048 Sum_probs=86.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------C------CCCCCCceeEEEEEeCC-------eEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSLS----------H------NLKPTEGFNITILQKGE-------YTLNIF 104 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~----------~------~~~~t~~~~~~~~~~~~-------~~~~l~ 104 (224)
.+.++|+++|+.++|||||+++|+... +... + ....|+......+.+++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 356899999999999999999997531 1110 0 11234444445566655 899999
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
||||+.+|.......++.+|++|+|+|+++....... ..|..... .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999988888889999999999999987554433 33433332 37899999999998764
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.66 E-value=1e-15 Score=137.36 Aligned_cols=117 Identities=21% Similarity=0.140 Sum_probs=87.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc--CCCCC---------C-C------CCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS--GNTSL---------S-H------NLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~---------~-~------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|+++|++|+|||||+++|+. +.+.. . + ....|+......+.+++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3568999999999999999999984 22110 0 0 122344555666778889999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+......+++.+|++|+|+|++++.+..... .|..+.. .++|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 8887888889999999999999987765543 3444433 37899999999999765
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=5e-17 Score=136.97 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE---------------------eC---CeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ---------------------KG---EYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~---------------------~~---~~~~~l~D~~G 108 (224)
++|+++|.+|+|||||+|++++......+....|...+..... ++ ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998873332222234443333221 12 36899999999
Q ss_pred chhH----HHHHH---hhccCCCEEEEEEECCCC
Q psy12173 109 QENV----RRFWN---TYFEDTDLLVFVVDSADP 135 (224)
Q Consensus 109 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 135 (224)
.... +.+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22222 346899999999999886
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=1.3e-15 Score=133.27 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=88.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCCCCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT----------------------SLSHNLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~----------------------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+.++|+++|+.++|||||..+|+...- ..+.....|+......+.+++..++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3568999999999999999999973110 111122345556677888999999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|+.+|..-....++-+|++|+|+|+..+-... ....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~q-T~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQ-TRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccc-cHHHHHHHHH----hCCceEEEEecccchhc
Confidence 99999988888899999999999999984433 3444555544 38999999999998765
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=2.1e-15 Score=125.41 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=91.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCC----------------------Ccee--------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----NLKPT----------------------EGFN-------------- 90 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----~~~~t----------------------~~~~-------------- 90 (224)
..++|+++|.+++|||||+++|.+..+.+.. ...|+ +.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998864211 11121 0000
Q ss_pred -----------EEEEEe-CCeEEEEEEcCCch-------------hHHHHHHhhccCCCE-EEEEEECCCCCCHHHHHHH
Q psy12173 91 -----------ITILQK-GEYTLNIFELGGQE-------------NVRRFWNTYFEDTDL-LVFVVDSADPSKLPVAAME 144 (224)
Q Consensus 91 -----------~~~~~~-~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~ 144 (224)
...+.. ...++.+|||||.. .+......++..++. +++|.|.+..-.-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 001111 24679999999952 345566666666654 5555666543221222223
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+..+ ...+.|+++|+||+|+.+... ..+..+ ......+....+++++||++|.|++ .+...+.+
T Consensus 190 ~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~~l~~~~~~v~~~SA~~~~~i~-~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKK-DITAALAA 254 (353)
T ss_dssp HHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT---TCSSCCTTCEEECCCCCHHHHHTTC-CHHHHHHH
T ss_pred HHHh----CcCCCceEEEeccccccCcchhHHHHHh---CCcccccCCceEEEeCCcccccccc-cHHHHHHH
Confidence 3333 225789999999999976422 122221 1111111111378999999999994 44444443
No 190
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=3.5e-15 Score=130.65 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=82.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEE----------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITIL---------------------------------- 94 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~---------------------------------- 94 (224)
...++|+++|.+|+|||||+|+|++..+.. .....+++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457899999999999999999999988641 002222221111000
Q ss_pred ----EeCC---eEEEEEEcCCchh-----------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC
Q psy12173 95 ----QKGE---YTLNIFELGGQEN-----------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 95 ----~~~~---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
.... ..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 0000 3689999999865 556666778899999999999986666665555555432 36
Q ss_pred CcEEEEEeCCCCCCC
Q psy12173 157 VPILVIANKQDVPGA 171 (224)
Q Consensus 157 ~piilv~nK~Dl~~~ 171 (224)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999764
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.56 E-value=2.7e-15 Score=124.86 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=71.0
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE- 175 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~- 175 (224)
.+..+.++||||...... .....+|++++|+|....+....+. ......|.++|+||+|+......+
T Consensus 170 ~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 467899999999543222 2358899999999988765543221 111346899999999986542222
Q ss_pred ---HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 176 ---EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
++.+.+.........|.++++++||++|.|+ +++...+.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi-~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGL-AELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCH-HHHHHHHHHHHHH
Confidence 2222221111111234458999999999999 6677777766543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=2.7e-14 Score=118.39 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENVRRF 115 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~~ 115 (224)
++|+++|.+|+|||||++++++..+...+....|.+.+...+.+.+ ..+.+|||||+.++...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5899999999999999999999775443333446665555555543 57999999998875421
Q ss_pred -------HHhhccCCCEEEEEEECCC
Q psy12173 116 -------WNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 116 -------~~~~~~~~d~ii~v~d~~~ 134 (224)
...+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2234789999999999987
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.55 E-value=6.8e-16 Score=125.69 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=96.6
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHH
Q psy12173 67 TLIKQISSGNTS-LSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAM 143 (224)
Q Consensus 67 sl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~ 143 (224)
+|+.++..+.|. . .+.||++..+. ... .+..+.+||+ +++++.++..+++++|++|+|+|+++++ ++..+..
T Consensus 32 sl~~~~~~~~f~~~--~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQ--NLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTT--TCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEccccccc--CCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 688888888887 6 67889985443 332 2237899999 8899888889999999999999999997 6777888
Q ss_pred HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 144 ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 144 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
|+..+.. .++|+++|+||+|+.+....++..+..+.. ... + ++++|||++|.|+++.|.
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~--~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-Y--PIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-S--CEEECCTTTCTTHHHHHH
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-C--cEEEEECCCCcCHHHHHH
Confidence 8776543 379999999999997642212222222111 111 3 899999999999955543
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.53 E-value=1.4e-14 Score=132.49 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=85.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC------------CCC----CCCCCCCCceeEEEEEeC----------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN------------TSL----SHNLKPTEGFNITILQKG---------------- 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~------------~~~----~~~~~~t~~~~~~~~~~~---------------- 97 (224)
...++|+++|+.++|||||+++|+... +.. +.....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356899999999999999999998641 100 001123444444444443
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+..+.+|||||+.+|...+..+++.+|++|+|+|++++.+......|. .... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 688999999999999988888899999999999999998877654443 3333 378999999999986
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=4.1e-15 Score=121.09 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=72.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC-CCCCCC------CCCCCCceeEEE--EEe--CCeEEEEEEcCCc-------hh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG-NTSLSH------NLKPTEGFNITI--LQK--GEYTLNIFELGGQ-------EN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~-~~~~~~------~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~-------~~ 111 (224)
...++|+++|++|+|||||+++|.+. .++... ...++....... ++. ....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998875 443311 001222221111 121 2368999999997 43
Q ss_pred HHHHHH-------hhcc-------------CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 112 VRRFWN-------TYFE-------------DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 112 ~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..... .+++ .+++++++.+.+. .+++... +.+..+ . ...|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~--~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H--NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T--TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H--hcCCEEEEEEeCCCCC
Confidence 332221 2221 2344555555432 1344433 222222 1 3679999999999975
Q ss_pred CCCH----HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 171 ALSA----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 171 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.... +++.+.++ .++++|+++||++| |+++.|...+....
T Consensus 170 ~~e~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIE-------EHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHH-------HTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 3111 12222221 11238999999999 99877776655543
No 196
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=2.3e-13 Score=122.15 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=96.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-----------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF----------------------------------------- 89 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 89 (224)
..++|+++|.+++|||||+|+|++..+.+... .+++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 46799999999999999999999987632111 111110
Q ss_pred -----------eEEEEEe-CCeEEEEEEcCCchh-------------HHHHHHhhc-cCCCEEEEEEECCCCCCHHHHHH
Q psy12173 90 -----------NITILQK-GEYTLNIFELGGQEN-------------VRRFWNTYF-EDTDLLVFVVDSADPSKLPVAAM 143 (224)
Q Consensus 90 -----------~~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~ 143 (224)
....+.. ...++.++||||... .......++ ..+|++++|+|++.+........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0111111 234688999999432 233333333 68899999999998644333323
Q ss_pred HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 144 ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 144 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.+..+. . .+.|+++|+||+|+..... ..++.. - .....+....+++++||++|.|+ +.+.+.+.+
T Consensus 209 ll~~L~-~---~g~pvIlVlNKiDlv~~~~~~~~il~-~--~~~~l~lg~~~VV~iSA~~G~Gv-deL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD-P---QGQRTIGVITKLDLMDEGTDARDVLE-N--KLLPLRRGYIGVVNRSQKDIDGK-KDITAALAA 274 (772)
T ss_dssp HHHHHC-T---TCSSEEEEEECTTSSCTTCCSHHHHT-T--CSSCCSSCEEECCCCCCEESSSS-EEHHHHHHH
T ss_pred HHHHHH-h---cCCCEEEEEeCcccCCcchhhHHHHH-H--HhhhhhccCCceEEecccccccc-hhHHHHHHH
Confidence 333332 2 4789999999999976522 222222 1 11111111237899999999999 666667665
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.50 E-value=6.2e-14 Score=116.78 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---------------------CCeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---------------------GEYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~D~~G~~~ 111 (224)
++|+++|.+|+|||||++++++......+....|...+.....+ ....+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999986532222223344544444433 235799999999765
Q ss_pred H-------HHHHHhhccCCCEEEEEEECCC
Q psy12173 112 V-------RRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 ~-------~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
. .......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2233345789999999999986
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=1.2e-14 Score=129.52 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=86.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--CCC------CC---C-------CCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN--TSL------SH---N-------LKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~--~~~------~~---~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.++|+++|+.++|||||..+|+... ... .+ + ...|+......+.+++..++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 4689999999999999999997311 110 00 0 0123334455677889999999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
......++-+|++|+|+|+..+-..+ ....|...... ++|.++++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccC
Confidence 98888899999999999999873332 34555555554 7899999999998765
No 199
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=107.89 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=76.6
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHH---HHHHhcCC-CCCCcEEEEEeCC-CCCCCCCHHHHHh
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMEL---KNLLGDQR-LSTVPILVIANKQ-DVPGALSAEEVGV 179 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~piilv~nK~-Dl~~~~~~~~~~~ 179 (224)
|.+|+..++..|..|++++|++|||+|++|.+.++ ..+.+ ..++.... ..+.|++|++||. |++......++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 34488999999999999999999999999987765 55555 33344332 3689999999985 8988899999999
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++... .+.| .+..|||++|+|+.+-
T Consensus 187 ~L~L~~l-~R~W--~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 187 ELHLNLL-NHPW--LVQDTEAETLTGFLNG 213 (227)
T ss_dssp HTTGGGG-CSCE--EEEEEETTTCTTHHHH
T ss_pred HcCCcCC-CCCE--EEEEeECCCCcCHHHH
Confidence 9999877 4788 9999999999999443
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.4e-13 Score=112.34 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=88.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH-------HHHHHhhcc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV-------RRFWNTYFE 121 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~ 121 (224)
.....+|+++|.||+|||||+|+|++.+....+....|.+.....+.+.+.++.++||||.... ........+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3456799999999999999999999987655566677888999999999999999999995421 122334578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVP 169 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~ 169 (224)
.+|++++|+|++++ .........++... .....+|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 89999999999986 33332222222221 112467889999999963
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=116.25 Aligned_cols=110 Identities=18% Similarity=0.104 Sum_probs=61.9
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--- 173 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--- 173 (224)
.+..+.++||+|..... ....+.+|.+++|+|+++++....... .+ ...|.++|+||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45788999999964222 223578999999999987643221111 11 2457899999999864311
Q ss_pred -HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 174 -AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..++...+.........+..+++++||++|.|+ +++...+.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi-~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI-SEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCH-HHHHHHHHHHHH
Confidence 112222222111000122348899999999999 666767766543
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=1.8e-14 Score=119.33 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=65.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE- 175 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~- 175 (224)
.+.++.++||||....... ....+|++++|+|.+.++.+..... .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4678999999997654432 3589999999999976543211110 00 146789999999997542222
Q ss_pred ---HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 ---EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++.+.++........|..+++++||++|.|+ +.+.+.+.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi-~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGI-DEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH-HHHHHHHHHHHH
Confidence 2222211111001122348999999999999 666666666543
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=1.1e-13 Score=110.05 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=70.3
Q ss_pred eEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.+|||||+.+..... ...+.. +++++++|........................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999988764331 124566 8999999987654444333222111110001368999999999987643
Q ss_pred CHHHHHhhc-Cccc----------------------ccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 SAEEVGVAL-DLSS----------------------ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~~~~~~~~~-~~~~----------------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
..+++.+.+ +... .......++++++||++|.|+ +++...+.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi-~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF-EDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccH-HHHHHHHHHHhcc
Confidence 222222221 0000 000011137999999999999 6677777776653
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.44 E-value=1.3e-12 Score=117.73 Aligned_cols=117 Identities=18% Similarity=0.068 Sum_probs=83.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--------CCC----------CCCCCCCCceeEEEEEeC-------CeEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--------TSL----------SHNLKPTEGFNITILQKG-------EYTLNIF 104 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--------~~~----------~~~~~~t~~~~~~~~~~~-------~~~~~l~ 104 (224)
.+.++|+++|+.++|||||..+|+... ... +.....|+......+.++ ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 457899999999999999999997321 000 011122333344445553 5899999
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|||||.+|..-....++-+|++|+|+|+..+-.. +....|...... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 9999999999888889999999999999988433 334455555554 7999999999998654
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=116.16 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=72.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------CCCCCceeEEEEEe--CC--eEEEEEEcCCchhHH------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHN------LKPTEGFNITILQK--GE--YTLNIFELGGQENVR------ 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~~~------ 113 (224)
.-.++|+++|++|+|||||+++|.+..++..+. ..++.......+.. .+ ..+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456789999999999999999999987632111 01222211111111 22 478999999976531
Q ss_pred -HH-------H-----------HhhccCCCEEEEEEECCCC-CCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 114 -RF-------W-----------NTYFEDTDLLVFVVDSADP-SKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 114 -~~-------~-----------~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.. . ..++.++++.+++++.... .++.... .++..+ . .+.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 0 1123445543444444332 3455554 344444 2 378999999999986542
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
......+.... .. ...+++++++||+++.++++.
T Consensus 184 ev~~~k~~i~~-~~--~~~~i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 184 ECQQFKKQIMK-EI--QEHKIKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHHHHHHH-HH--HHHTCCCCCCC----------
T ss_pred HHHHHHHHHHH-HH--HHcCCeEEeCCCCCCcCHHHH
Confidence 22111111110 00 112348999999999998553
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=3.5e-14 Score=110.04 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=89.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCCCCC--------ceeEEEE------------------EeCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS------HNLKPTE--------GFNITIL------------------QKGE 98 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~------~~~~~t~--------~~~~~~~------------------~~~~ 98 (224)
...+|+++|.+|+|||||+++|........ .+...+. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356999999999999999999986521110 0110000 1111111 1234
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEE 176 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 176 (224)
..+.+|||+|+.... ..+....+.+++|+|+.+.... ...+. .. .+.|.++++||+|+.+. ...++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHHH
Confidence 678899999951110 1111357889999999886431 11111 11 25788999999998643 34455
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..+.+... ...++++++||++|.|+ +++.+.+.+.+.
T Consensus 177 ~~~~~~~~-----~~~~~i~~~Sa~~g~gi-~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 MKADAKLI-----NPRAKIIEMDLKTGKGF-EEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHH-----CTTSEEEECBTTTTBTH-HHHHHHHHHHHC
T ss_pred HHHHHHHh-----CCCCeEEEeecCCCCCH-HHHHHHHHHHHH
Confidence 54444211 11238999999999999 555556665554
No 207
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=107.47 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=80.7
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHH---HHHhcCC-CCCCcEEEEEeC-CCCCCCCCHHHHHh
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELK---NLLGDQR-LSTVPILVIANK-QDVPGALSAEEVGV 179 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~ 179 (224)
|.+||+.++..|..+++++|++|||+|++|.++++ ..+.+. .++.... ..+.|++|++|| .|+.......++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 35688999999999999999999999999998876 444333 3333221 368999999996 59999999999999
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.+++.... +.| .+..|||.+|+|+.+-+
T Consensus 272 ~L~L~~l~-r~W--~Iq~csA~tGeGL~EGl 299 (312)
T 3l2o_B 272 ELHLNLLN-HPW--LVQDTEAETLTGFLNGI 299 (312)
T ss_dssp HTTGGGGC-SCE--EEEEEETTTCTTHHHHH
T ss_pred HcCCccCC-CcE--EEEecccCCCcCHHHHH
Confidence 99998774 788 99999999999995443
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=7.7e-12 Score=103.22 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=63.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--- 173 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--- 173 (224)
.+.++.++||+|...-... ....+|.+++|+|...++........+ ...+.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHHH
Confidence 5688999999996543221 246899999999986543221111000 1235577889999754311
Q ss_pred --HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 174 --AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.+++...+.........|..+++.+||+++.|+ +++.+.+.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi-~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGL-DSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH-HHHHHHHHHHHH
Confidence 122222221111000112337899999999999 777777776654
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.30 E-value=3.1e-12 Score=99.31 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=79.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee----------------EEEEEeC-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN----------------ITILQKG----------------- 97 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~----------------~~~~~~~----------------- 97 (224)
..++|+++|++|+|||||++++....+.. ...++++.. ...+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 46799999999999999999999765443 222222211 1111100
Q ss_pred ---CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--C
Q psy12173 98 ---EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--L 172 (224)
Q Consensus 98 ---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 172 (224)
+..+.++|++|..... ..+-...+..+.++|......... .. ... ...|.++|+||+|+.+. .
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------~~~~~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------MKTADLIVINKIDLADAVGA 182 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------HTTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH------hhcCCEEEEeccccCchhHH
Confidence 0134455555421100 011122344556666433211110 00 011 14678999999998643 3
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..++..+.+... ...++++++||++|.|+ +++...+.+.+.
T Consensus 183 ~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv-~~l~~~l~~~~~ 223 (226)
T 2hf9_A 183 DIKKMENDAKRI-----NPDAEVVLLSLKTMEGF-DKVLEFIEKSVK 223 (226)
T ss_dssp CHHHHHHHHHHH-----CTTSEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCCeEEEEEecCCCCH-HHHHHHHHHHHH
Confidence 444444443210 11238999999999999 555555555544
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.27 E-value=8.8e-12 Score=104.31 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=53.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENV 112 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~ 112 (224)
....+|+++|.+|+|||||+++|++..+...+....|.+++...+.+.+ ..+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999999876443444556677777666543 35999999998865
Q ss_pred HH-------HHHhhccCCCEEEEEEECCCCCC
Q psy12173 113 RR-------FWNTYFEDTDLLVFVVDSADPSK 137 (224)
Q Consensus 113 ~~-------~~~~~~~~~d~ii~v~d~~~~~s 137 (224)
.. .+..+++.+|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 54 34556899999999999986533
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.94 E-value=2.9e-10 Score=92.37 Aligned_cols=90 Identities=12% Similarity=-0.008 Sum_probs=64.9
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLS 184 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~ 184 (224)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.++.. .++..+.++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5556655566899999999999999986 78877888876543 4799999999999975421 1222222211
Q ss_pred cccCcccceeEEEeecCCCCccccc
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.. .+++++||++|.|+++.
T Consensus 141 ----~g--~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 141 ----AG--YDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp ----TT--CEEEECCTTTCTTHHHH
T ss_pred ----CC--CeEEEEECCCCCCHHHH
Confidence 12 28999999999999443
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=3.9e-09 Score=88.41 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=63.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~ 111 (224)
....+++++|++|+|||||+|+|++... ...+....|..++...+.+.+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999999775 443344446667777776654 4689999999432
Q ss_pred -------HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 -------VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 -------~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
+...+...++.+|++++|+|..+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334445789999999999875
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.83 E-value=4.1e-08 Score=84.78 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=85.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCCCCC--CCCCCCC-----------ceeEEEE-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS------SGNTSLS--HNLKPTE-----------GFNITIL----------------- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~------~~~~~~~--~~~~~t~-----------~~~~~~~----------------- 94 (224)
....|+++|.+|+||||++++|. +.+.... +.+.+.. +......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 4331110 0011100 0111110
Q ss_pred EeCCeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCC
Q psy12173 95 QKGEYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQD 167 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 167 (224)
...+.++.++||||.... ....... ...+|.+++|+|+......... ...+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCc
Confidence 115678999999996532 1111111 2378999999999886442222 222211 2564 89999999
Q ss_pred CCCCCCH-HHHHhhcCccc--------ccCcccceeEEEeecCCCCc-cccchHHHHHHH
Q psy12173 168 VPGALSA-EEVGVALDLSS--------ISSRQHRIKLIATQAPSNLH-HLHVSVVEAEQA 217 (224)
Q Consensus 168 l~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~Sa~~~~g-v~~~~~~~i~~~ 217 (224)
....... -++....+... ........+...+|++.|.| + +.+.+.+.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi-~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI-EGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTT-TTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcH-HHHHHHHHHH
Confidence 8754331 22332222110 00000011445689999999 7 6666665543
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.7e-08 Score=83.19 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCceeEEE--EEeCC--eEEEEEEcCCchhH--------------
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEGFNITI--LQKGE--YTLNIFELGGQENV-------------- 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~~~~~~--~~~~~--~~~~l~D~~G~~~~-------------- 112 (224)
++++++|++|+|||||++.|.+..+...... .+........ ++..+ ..+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5699999999999999999998753321111 1111111111 11122 37899999984211
Q ss_pred HH----HHHhh---------ccCC--C-EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 113 RR----FWNTY---------FEDT--D-LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 113 ~~----~~~~~---------~~~~--d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.. ....+ ...+ | +++++.|...+ +......+...+. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 11 11111 1122 3 35566666654 3333322222222 47899999999998654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.68 E-value=5.8e-10 Score=93.06 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH--------HHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG------NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR--------RFWN 117 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~ 117 (224)
..+++++|.+|+|||||+|+|.+. ..........|... ..+... ..+.++||||..... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLE-SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999976 22221111222222 222222 238999999953211 1112
Q ss_pred hhc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 118 TYF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 118 ~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
..+ ...+.++++++....--+..+.. ...+. ..+.|+++++||.|..+.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCccccc
Confidence 222 67899999998843200110000 01111 146899999999998765
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.67 E-value=4.8e-08 Score=78.48 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=65.6
Q ss_pred EEEcCCch-hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc
Q psy12173 103 IFELGGQE-NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL 181 (224)
Q Consensus 103 l~D~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 181 (224)
+-..||+. .....+...+..+|++++|+|+.++.+..+ ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44678876 455566677999999999999999877642 1222332 378999999999997642222333333
Q ss_pred CcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 182 DLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 182 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ .... +++++||++|.|+ +.+...+.+.+.
T Consensus 76 ~-----~~g~--~~i~iSA~~~~gi-~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGI--RSLSINSVNGQGL-NQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTC--CEEECCTTTCTTG-GGHHHHHHHHHH
T ss_pred H-----hcCC--cEEEEECCCcccH-HHHHHHHHHHHH
Confidence 1 1122 7899999999999 666666666554
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=2.1e-07 Score=74.30 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEEEEEeC--C--eEEEEEEcCCchh---------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNITILQKG--E--YTLNIFELGGQEN--------- 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~~~~~~--~--~~~~l~D~~G~~~--------- 111 (224)
.++++++|++|+|||||++.|.+...+... ....+.......+..+ . ..++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999975433211 0111111111111111 1 3789999998311
Q ss_pred -HHH--------HHHh----------hccCCCEEEEEEECC-CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 -VRR--------FWNT----------YFEDTDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 -~~~--------~~~~----------~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
... .... .+..+++.++++|.. .+ +......+...+.. ..++++|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHLSK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence 111 1111 123468888998855 33 23333222222332 3899999999998754
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.56 E-value=1.1e-08 Score=85.38 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=65.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------C-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH--------HHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT------S-LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR--------RFW 116 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~------~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~ 116 (224)
..+++++|.+|+|||||+|+|.+... . .......|... ..+...+ .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 46899999999999999999997531 1 10111112222 2222222 28999999953211 111
Q ss_pred Hhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH
Q psy12173 117 NTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE 176 (224)
Q Consensus 117 ~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 176 (224)
... ....+.++++++....--...+.. ...+.. .+.|+++++||.|..+....+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~~---~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVSG---GRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEEEEEHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE--EEEecC---CCceEEEEecCccccccccHHH
Confidence 111 367788999998742200111000 011111 4689999999999877644433
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.50 E-value=1.2e-06 Score=73.87 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCceeEEEEEeCC-eEEEEEEcCCchh----HHHHH-HhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK----PTEGFNITILQKGE-YTLNIFELGGQEN----VRRFW-NTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~----~t~~~~~~~~~~~~-~~~~l~D~~G~~~----~~~~~-~~~~~~ 122 (224)
..++++|++|+|||||+|.+.+...+...... ++.. ....++... ..+.++|++|... ..... ...+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 48999999999999999999985433211110 0100 011112222 2589999998432 22222 122344
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC---------CCCCHHHHHhhcCcccc---cCc-
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP---------GALSAEEVGVALDLSSI---SSR- 189 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---------~~~~~~~~~~~~~~~~~---~~~- 189 (224)
.+..++ ++...+ ...+..+...+.. .++|+++|.||.|+. +....+++.+.+..... ...
T Consensus 149 ~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566655 666542 2222223333333 368999999999863 22334444333321110 001
Q ss_pred ccceeEEEeec--CCCCccccchHHHHHHHH
Q psy12173 190 QHRIKLIATQA--PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~~~~~~Sa--~~~~gv~~~~~~~i~~~l 218 (224)
.....++.+|+ ..+.|+ +.+.+.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~-e~L~d~I~~~L 251 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDF-PVLMDKLISDL 251 (413)
T ss_dssp CSSCCEEECCTTCTTSTTH-HHHHHHHHHHS
T ss_pred CCCCcEEEEecCcCCccCH-HHHHHHHHHhC
Confidence 01126788999 566667 66666666554
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.47 E-value=1.1e-07 Score=79.22 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=64.5
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCccc-
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSS- 185 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~- 185 (224)
..++|++.+..+.+.++++++|+|+++++ ..|...+.... .++|+++|+||+|+.+.. ..++..+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46889999988899999999999999852 22322232221 378999999999997542 2333333221100
Q ss_pred -ccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 186 -ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 186 -~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
...+.. +++++||++|.|+ +++...+.+.
T Consensus 128 ~~g~~~~--~v~~iSA~~g~gi-~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPE--DVFLISAAKGQGI-AELADAIEYY 157 (368)
T ss_dssp HTTCCCS--EEEECCTTTCTTH-HHHHHHHHHH
T ss_pred HcCCCcc--cEEEEeCCCCcCH-HHHHhhhhhh
Confidence 000111 6899999999999 5555565543
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.37 E-value=2.4e-07 Score=77.24 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=65.0
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCc--c
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDL--S 184 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~--~ 184 (224)
.++.|++.+..+++.++++++|+|++++++ .....+...+ .++|+++|+||+|+.+. ...++..+.+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999888899999999999999753 1111122221 37899999999999765 223333333211 0
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
....+.. +++.+||++|.|+ +++...+.+.+
T Consensus 130 ~~g~~~~--~v~~iSA~~g~gi-~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPV--DVCLVSAAKGIGM-AKVMEAINRYR 160 (369)
T ss_dssp TTTCCCS--EEEECBTTTTBTH-HHHHHHHHHHH
T ss_pred HcCCCcc--cEEEEECCCCCCH-HHHHHHHHhhc
Confidence 0000112 6899999999999 66666665543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.31 E-value=5.2e-07 Score=72.41 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=35.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++++++|.+|+|||||+|++.+......... ..|.... .+.. +..+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 457999999999999999999998763322111 1222222 1222 3468999999953
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.30 E-value=2.7e-06 Score=75.40 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
..++++|+.|||||||++.+.+...+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999987544
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.22 E-value=1.5e-06 Score=73.65 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=64.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCC-----------CCceeEEEE-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKP-----------TEGFNITIL----------------- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~-----------t~~~~~~~~----------------- 94 (224)
....|+++|.+|+||||++..|.. .+... .+.+.+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999988873 22100 001101 011111110
Q ss_pred EeCCeEEEEEEcCCchh----HHH-HH-HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 95 QKGEYTLNIFELGGQEN----VRR-FW-NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~----~~~-~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
...+..+.++||+|... ... .. ......+|.+++|+|+....... .....+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh----CCCeEEEEECCCC
Confidence 01247899999999432 111 11 11234689999999998753322 223333222 2456799999998
Q ss_pred CCC
Q psy12173 169 PGA 171 (224)
Q Consensus 169 ~~~ 171 (224)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.16 E-value=9.2e-07 Score=70.22 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.+++++|.+|+|||||+|++.+.......... .|.... .+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcc
Confidence 69999999999999999999987753311111 122211 1222 3468999999955
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=3.8e-06 Score=73.77 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=40.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCC-CCCCceeEEEEE---eCCeEEEEEEcCCch
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS--LSHNL-KPTEGFNITILQ---KGEYTLNIFELGGQE 110 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~--~~~~~-~~t~~~~~~~~~---~~~~~~~l~D~~G~~ 110 (224)
.+..+|+++|.+|+|||||+|+|.+.... ..+.. ..|.+....... ..+..+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 35678999999999999999999987632 11111 223333222111 246789999999954
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.03 E-value=1.1e-05 Score=68.58 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCC--CCCCCC-----------------------CCCce-eE--EEE-Ee
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG------NTS--LSHNLK-----------------------PTEGF-NI--TIL-QK 96 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~------~~~--~~~~~~-----------------------~t~~~-~~--~~~-~~ 96 (224)
...|+++|.+|+||||++..|... +.. ..+.+. .+.+. .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998862 110 000000 00000 00 000 01
Q ss_pred CCeEEEEEEcCCchhHHH----HHH--hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-c-EEEEEeCCCC
Q psy12173 97 GEYTLNIFELGGQENVRR----FWN--TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-P-ILVIANKQDV 168 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~----~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~Dl 168 (224)
.+..+.++||||...... ... .....+|.+++|+|+..+. + .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 457899999999654221 111 1123689999999987653 2 22222222 1 134 5 8899999998
Q ss_pred CCC
Q psy12173 169 PGA 171 (224)
Q Consensus 169 ~~~ 171 (224)
...
T Consensus 251 ~~~ 253 (432)
T 2v3c_C 251 SAK 253 (432)
T ss_dssp CST
T ss_pred ccc
Confidence 643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.01 E-value=1.8e-05 Score=67.03 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCC-----------CCceeEEE-----------------EE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKP-----------TEGFNITI-----------------LQ 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~-----------t~~~~~~~-----------------~~ 95 (224)
...|+++|++|+||||++..|.. .+... .+.+.+ ..+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56788999999999999998872 22100 000000 01111110 00
Q ss_pred eCCeEEEEEEcCCchh------HHHHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 96 KGEYTLNIFELGGQEN------VRRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+..+.++||||... ....... ..-.++.+++|+|+.......+....+... -.+..+++||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1257789999999533 1111111 122579999999998764433333333322 245689999999
Q ss_pred CCCC
Q psy12173 168 VPGA 171 (224)
Q Consensus 168 l~~~ 171 (224)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8643
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.88 E-value=1e-05 Score=65.60 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=54.1
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccce
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~ 193 (224)
....++|.+++|+|+.++..-.+....+...... .++|.++|+||+|+.++.. .+++.+.++. .+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~-- 151 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGY-- 151 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTC--
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCC--
Confidence 3588999999999999876544433322222222 4789999999999987632 2333333311 122
Q ss_pred eEEEeecCCCCcccc
Q psy12173 194 KLIATQAPSNLHHLH 208 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~ 208 (224)
+++.+||.+|.|+++
T Consensus 152 ~v~~~sa~~~~g~~~ 166 (307)
T 1t9h_A 152 DVYLTSSKDQDSLAD 166 (307)
T ss_dssp CEEECCHHHHTTCTT
T ss_pred eEEEEecCCCCCHHH
Confidence 789999999999854
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.88 E-value=2e-06 Score=68.21 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred cCCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 106 LGGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 106 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
.|||.. ........+..+|++++|+|+.++.+..+.. +. + . ++|.++|+||+|+.+....+++.+.++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 366553 2234455689999999999999986654311 11 1 1 7899999999999764222233332211
Q ss_pred cccCcccceeEEEeecCCCCccccchH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
... ++ .+||++|.|+ +.+.
T Consensus 74 ----~g~--~v-~iSa~~~~gi-~~L~ 92 (262)
T 3cnl_A 74 ----QGK--RV-ITTHKGEPRK-VLLK 92 (262)
T ss_dssp ----TTC--CE-EECCTTSCHH-HHHH
T ss_pred ----cCC--eE-EEECCCCcCH-HHHH
Confidence 122 67 9999999998 4433
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.83 E-value=5.2e-05 Score=61.16 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCCC-----------CceeEEE-----------------EE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKPT-----------EGFNITI-----------------LQ 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~t-----------~~~~~~~-----------------~~ 95 (224)
...++++|.+|+||||++..+.. ++... .+.+.+. .+..... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788899999999999998873 22100 0000000 0111100 01
Q ss_pred eCCeEEEEEEcCCchh--HHH-HHH-----hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCC
Q psy12173 96 KGEYTLNIFELGGQEN--VRR-FWN-----TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQ 166 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 166 (224)
.++..+.++||||... ... ... .....+|.+++|+|.... .+.......+.. ..| ..++.||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456899999999765 322 111 124478999999998754 222222333321 345 67899999
Q ss_pred CCCCC
Q psy12173 167 DVPGA 171 (224)
Q Consensus 167 Dl~~~ 171 (224)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98643
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.41 E-value=2.5e-05 Score=66.98 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=54.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchh--HHHHH--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQEN--VRRFW-------- 116 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~--~~~~~-------- 116 (224)
....|+++|.+||||||+.++|....... ..++..++...... ......+||..|.+. .+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~---~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI---GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc---CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999998643211 11111111000000 113446789888733 33332
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHH
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELK 146 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 146 (224)
..++...++.++|+|.++. +...-..++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 4456677888999999998 4444444433
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.34 E-value=0.00034 Score=57.79 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=48.4
Q ss_pred hhccCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
....++|.+++|... +|..-.+ +.+++..... .++|.++|+||+|+.++...+...+.... +...+. +++
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~--~v~ 196 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGY--RVL 196 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTC--CEE
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCC--cEE
Confidence 346899999988654 5654333 3333322222 36888999999999765221112222211 111223 789
Q ss_pred EeecCCCCccc
Q psy12173 197 ATQAPSNLHHL 207 (224)
Q Consensus 197 ~~Sa~~~~gv~ 207 (224)
.+||.+|.|++
T Consensus 197 ~~Sa~~~~gl~ 207 (358)
T 2rcn_A 197 MVSSHTQDGLK 207 (358)
T ss_dssp ECBTTTTBTHH
T ss_pred EEecCCCcCHH
Confidence 99999999984
No 234
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.18 E-value=0.0007 Score=57.40 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCCCC--CCCCCCC-----------CceeEEE--------------E--
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS-------SGNTSL--SHNLKPT-----------EGFNITI--------------L-- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~-------~~~~~~--~~~~~~t-----------~~~~~~~--------------~-- 94 (224)
....|+++|.+|+||||+...|. +.+... .+.+.+. .+..... +
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678889999999999988887 322110 0000000 0001000 0
Q ss_pred -EeCCeEEEEEEcCCchhHH-HHH-----HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCC
Q psy12173 95 -QKGEYTLNIFELGGQENVR-RFW-----NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQ 166 (224)
Q Consensus 95 -~~~~~~~~l~D~~G~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 166 (224)
...+..+.++||||..... ... ......++.+++|+|+......-. ....+.. ..+ .-++.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 1145789999999954321 111 112447899999999986543322 2222211 233 34689999
Q ss_pred CCCCC
Q psy12173 167 DVPGA 171 (224)
Q Consensus 167 Dl~~~ 171 (224)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 98644
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.17 E-value=0.00022 Score=53.04 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998864
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.11 E-value=0.00062 Score=57.86 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+..-|.|+|++++|||+|+|+|.+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35567899999999999999999853
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00047 Score=51.12 Aligned_cols=24 Identities=13% Similarity=0.450 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..++++|++|||||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998643
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.85 E-value=0.00055 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|++|+|||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.80 E-value=0.00067 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.80 E-value=0.00063 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
No 241
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.77 E-value=0.00069 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 67999999999999999754
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.75 E-value=0.0007 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-++++|++|||||||++.+.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998643
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.72 E-value=0.00039 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4588999999999999999999765
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.72 E-value=0.0011 Score=50.04 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+....|+++|++|+|||||++.|....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998653
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.71 E-value=0.00078 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--++++|++|||||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.69 E-value=0.0058 Score=45.69 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 170 (224)
...+.++|+|+.... .....+..+|.+++++..+... ......+..+..... ..+.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSSSH--HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCCCH--HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 478999999986632 2233466799999999887764 556555555543321 23567799999999644
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.64 E-value=0.001 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998864
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.64 E-value=0.00094 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.--++++|++|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999998754
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.64 E-value=0.0011 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998764
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.63 E-value=0.00096 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998754
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.62 E-value=0.0011 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....|+++|++|||||||++.+.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988643
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.62 E-value=0.0013 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.61 E-value=0.0011 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34478999999999999999998754
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.58 E-value=0.0014 Score=47.66 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQI 72 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l 72 (224)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.58 E-value=0.0012 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999865
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.54 E-value=0.0013 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.54 E-value=0.0013 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-|+++|++||||||+++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998764
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.52 E-value=0.0013 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.50 E-value=0.0015 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.50 E-value=0.0017 Score=48.07 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.48 E-value=0.0016 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999998754
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.47 E-value=0.0016 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.46 E-value=0.0017 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998764
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.45 E-value=0.0016 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999854
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.45 E-value=0.0016 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999999854
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.45 E-value=0.0018 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.44 E-value=0.0017 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.44 E-value=0.0021 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999865
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.43 E-value=0.0016 Score=51.17 Aligned_cols=26 Identities=42% Similarity=0.418 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999764
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.42 E-value=0.0019 Score=50.26 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q psy12173 53 RKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~ 73 (224)
..|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.42 E-value=0.0019 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.42 E-value=0.0017 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4468999999999999999999855
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.41 E-value=0.0019 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999754
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.41 E-value=0.0019 Score=48.32 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+++||+|+|||||+++|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998643
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.40 E-value=0.0019 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0018 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|+++|++||||||+.+.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999997643
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.40 E-value=0.002 Score=50.44 Aligned_cols=26 Identities=42% Similarity=0.321 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998864
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.0018 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.37 E-value=0.0019 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999999754
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0017 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999988643
No 282
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.37 E-value=0.0021 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.36 E-value=0.002 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.36 E-value=0.0022 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998754
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.35 E-value=0.002 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+|+++|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 286
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.34 E-value=0.004 Score=44.24 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999998654
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.34 E-value=0.0021 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++|+|||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.33 E-value=0.0022 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34478999999999999999999754
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.33 E-value=0.0016 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.32 E-value=0.0025 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0025 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 292
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.32 E-value=0.0023 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999998664
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0017 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999876
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.31 E-value=0.0026 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.31 E-value=0.0023 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 296
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.30 E-value=0.0022 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++||||||+++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347899999999999999998863
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.30 E-value=0.0025 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
No 298
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.29 E-value=0.0026 Score=47.55 Aligned_cols=21 Identities=48% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 299
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0027 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 300
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.0023 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++||||||+.+.|...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.27 E-value=0.0024 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
..--++++|++|||||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999887
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.26 E-value=0.0025 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999865
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.26 E-value=0.0023 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999865
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.25 E-value=0.0024 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478999999999999999998754
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0028 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 306
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.24 E-value=0.0028 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+.|+++|+|||||+|..++|....
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998643
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0027 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.22 E-value=0.0029 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.21 E-value=0.0036 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|++.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.21 E-value=0.0029 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.19 E-value=0.0028 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.....|+++|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999876
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.19 E-value=0.0025 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345789999999999999999885
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.18 E-value=0.003 Score=49.85 Aligned_cols=25 Identities=44% Similarity=0.639 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999865
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.15 E-value=0.0017 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=16.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q psy12173 52 QRKILILGLDNSGKSTLIKQIS-SG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~-~~ 75 (224)
.-.++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999999 54
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.15 E-value=0.0025 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
--++++|++|||||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.14 E-value=0.0033 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.14 E-value=0.004 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|+++|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 318
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.12 E-value=0.0033 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.11 E-value=0.0034 Score=47.11 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|++||||||+.+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988764
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.10 E-value=0.0036 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.10 E-value=0.0042 Score=46.77 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++||||||+.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.07 E-value=0.0039 Score=45.83 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.004 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.06 E-value=0.0037 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.05 E-value=0.0041 Score=46.52 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0045 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.04 E-value=0.004 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|++|||||||++.+.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4568999999999999999998874
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.04 E-value=0.0036 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|+.|||||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.03 E-value=0.0041 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.01 E-value=0.0043 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 331
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.00 E-value=0.0048 Score=49.59 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.-.++++|++|+|||||++.+.+...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 347899999999999999999986533
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.99 E-value=0.005 Score=46.33 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.98 E-value=0.0039 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.97 E-value=0.0035 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.95 E-value=0.0044 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|+.|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0049 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 337
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.94 E-value=0.0057 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.94 E-value=0.0032 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.94 E-value=0.0044 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999999 54
No 340
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.94 E-value=0.0048 Score=45.11 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988764
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.004 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 367999999999999999999865
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0047 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.92 E-value=0.0029 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999998743
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.91 E-value=0.0033 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-+++++|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.0038 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998753
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.90 E-value=0.0051 Score=45.90 Aligned_cols=25 Identities=36% Similarity=0.191 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999875
No 347
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.89 E-value=0.0029 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.88 E-value=0.0042 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 349
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.002 Score=47.42 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh---ccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY---FEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~ii~v~ 130 (224)
.++++|++|||||||++.+.....+. ++....+.+++..+.-+|.++.+.++.....+ +-..+..+++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~--------g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~ 75 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER--------GLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR 75 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT--------TCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--------CCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe
Confidence 68999999999999999998753111 22344555665554455555666655321110 23446666655
Q ss_pred E
Q psy12173 131 D 131 (224)
Q Consensus 131 d 131 (224)
+
T Consensus 76 ~ 76 (171)
T 2f1r_A 76 R 76 (171)
T ss_dssp E
T ss_pred c
Confidence 4
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.86 E-value=0.0046 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467999999999999999999865
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.86 E-value=0.0053 Score=46.96 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0052 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.85 E-value=0.0057 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.84 E-value=0.0048 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3467999999999999999999865
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.84 E-value=0.0058 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
....|+++|++||||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 356
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.83 E-value=0.0049 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3467999999999999999999865
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.83 E-value=0.005 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 367999999999999999999865
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.005 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467999999999999999999865
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.80 E-value=0.0071 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-|+++|+|||||+|..++|....
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998643
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.79 E-value=0.0051 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.78 E-value=0.0059 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0058 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 363
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.77 E-value=0.0055 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.+++|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999865
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.76 E-value=0.0063 Score=45.14 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 365
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.75 E-value=0.0054 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 367999999999999999999865
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.74 E-value=0.006 Score=45.86 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 367
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.74 E-value=0.005 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999754
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.74 E-value=0.0056 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467999999999999999999865
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.73 E-value=0.0053 Score=45.24 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998875
No 370
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.73 E-value=0.054 Score=40.86 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCc-hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 97 GEYTLNIFELGGQ-ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 97 ~~~~~~l~D~~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+...+.++|+|+. ..... ...+..+|.+|+++..+.. ++......+..+.... +.++.++.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~~~--~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDL--EALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSSHH--HHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcHHH--HHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3478999999987 43322 2346689999999876543 4455555555544321 566889999999765
No 371
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.73 E-value=0.0049 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999999754
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.72 E-value=0.0063 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-|++.|++||||||+.++|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.70 E-value=0.006 Score=44.31 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.69 E-value=0.0073 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 375
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.69 E-value=0.0056 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++||||||+++.+.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.68 E-value=0.007 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+-|+++|++|||||||++.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.68 E-value=0.0063 Score=47.63 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999864
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.67 E-value=0.0053 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 379
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.63 E-value=0.0058 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999984
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.63 E-value=0.0075 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|+++|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988775
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.62 E-value=0.0061 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998643
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.62 E-value=0.0074 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.61 E-value=0.0078 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.61 E-value=0.0061 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999885
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.60 E-value=0.0086 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+.++|.+|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.59 E-value=0.007 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999884
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.58 E-value=0.0059 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++||||||+++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999864
No 388
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.56 E-value=0.0062 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999864
No 389
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.55 E-value=0.0045 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468999999999999999999865
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.55 E-value=0.0082 Score=43.00 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999976
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.55 E-value=0.0084 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 392
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.51 E-value=0.0061 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888754
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.49 E-value=0.0073 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468999999999999999998743
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.49 E-value=0.0093 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 395
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.49 E-value=0.0087 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.48 E-value=0.0089 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 397
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.48 E-value=0.0072 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++||||||+++.+.+.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998754
No 398
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.47 E-value=0.0063 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998753
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.46 E-value=0.0035 Score=47.31 Aligned_cols=22 Identities=41% Similarity=0.672 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 400
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.46 E-value=0.0074 Score=49.20 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=72.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCCC-----------CCceeEEEEE----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--------HNLKP-----------TEGFNITILQ---------------- 95 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~~~~~-----------t~~~~~~~~~---------------- 95 (224)
..-.++++|++|+||||+++.+.+...+.. +.+.. ..+..+..-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 345789999999999999999885321110 00000 0111011000
Q ss_pred -eCCeEEEEEEcCCchh----HHHHH---HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 96 -KGEYTLNIFELGGQEN----VRRFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 96 -~~~~~~~l~D~~G~~~----~~~~~---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+..+.++|++|... ..... .. .-..|-.++++|..... +..+....+... -..-.+++||.|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~r-al~~de~llvLDa~t~~---~~~~~~~~~~~~----~~it~iilTKlD 279 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIAR-VTKPNLVIFVGDALAGN---AIVEQARQFNEA----VKIDGIILTKLD 279 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHH-HHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----SCCCEEEEECGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHH-HhcCCCCEEEEecHHHH---HHHHHHHHHHHh----cCCCEEEEeCcC
Confidence 0134567899999532 11111 11 12478899999987763 333344444322 123378889999
Q ss_pred CCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 168 VPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 168 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...... .-.+....+. ++..++ +|+++++
T Consensus 280 ~~a~~G~~l~~~~~~~~----------pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 280 ADARGGAALSISYVIDA----------PILFVG--VGQGYDD 309 (328)
T ss_dssp GCSCCHHHHHHHHHHTC----------CEEEEE--CSSSTTC
T ss_pred CccchhHHHHHHHHHCC----------CEEEEe--CCCCccc
Confidence 743311 1122222222 666666 7777743
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.0089 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|++|+|||++++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 402
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.44 E-value=0.0086 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999875
No 403
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.40 E-value=0.028 Score=47.71 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=37.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHh------------------cCCCCCCCCCC-CCCceeEEE----EEe---CCeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQIS------------------SGNTSLSHNLK-PTEGFNITI----LQK---GEYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~------------------~~~~~~~~~~~-~t~~~~~~~----~~~---~~~~~~l 103 (224)
.+..-|.|+|+.++|||+|+|.++ ...|....... .|.|.-... +.. .+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 356677899999999999999654 12333322222 345533221 111 2367999
Q ss_pred EEcCCc
Q psy12173 104 FELGGQ 109 (224)
Q Consensus 104 ~D~~G~ 109 (224)
+||.|.
T Consensus 145 lDTEG~ 150 (457)
T 4ido_A 145 MDTQGT 150 (457)
T ss_dssp EEECCB
T ss_pred EeccCC
Confidence 999994
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.37 E-value=0.01 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988864
No 405
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.32 E-value=0.0045 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 467999999999999999999865
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.26 E-value=0.012 Score=44.09 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999999865
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.24 E-value=0.011 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.23 E-value=0.0091 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..--++++|++|+|||||++.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446899999999999999988753
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.0088 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|+.|||||||++.+.+.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 457999999999999999998864
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.17 E-value=0.012 Score=45.17 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.--++++|++|+|||||+..+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999874
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.17 E-value=0.01 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999885
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.17 E-value=0.013 Score=44.19 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.17 E-value=0.013 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 414
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.13 E-value=0.12 Score=41.67 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.11 E-value=0.011 Score=48.48 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999865
No 416
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.013 Score=43.89 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 417
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.09 E-value=0.013 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..=.++++|++|+|||||++.+.+..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.07 E-value=0.015 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999763
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.07 E-value=0.012 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.05 E-value=0.015 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.04 E-value=0.013 Score=44.36 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.03 E-value=0.016 Score=44.58 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999864
No 423
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.02 E-value=0.013 Score=48.42 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+|||||++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999987
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.01 E-value=0.012 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++||||||+++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445789999999999999999875
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.01 E-value=0.011 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..++++|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999999653
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.00 E-value=0.015 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|+||+|||+|.+.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999999864
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.013 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
-.++++|++|+|||||++.+.+...+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 36799999999999999999986533
No 428
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.97 E-value=0.014 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 429
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.97 E-value=0.0092 Score=42.24 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|++.|++|+|||++.+.+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3469999999999999999887643
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.91 E-value=0.015 Score=46.36 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 431
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.88 E-value=0.018 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...+++.|++|+|||++.+.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999986654
No 432
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.85 E-value=0.016 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999999864
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.81 E-value=0.02 Score=44.07 Aligned_cols=24 Identities=42% Similarity=0.386 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|+++|.+||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.81 E-value=0.02 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 478999999999999999998755
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.81 E-value=0.019 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999875
No 436
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.79 E-value=0.021 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999999864
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.78 E-value=0.015 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.75 E-value=0.02 Score=44.12 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...++++++|++||||||+.++|...
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998753
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.75 E-value=0.015 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999988877764
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.74 E-value=0.018 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999985
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.73 E-value=0.015 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998863
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.71 E-value=0.021 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999865
No 443
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.019 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|++.||||+|||++.+++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.018 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.-.++++|++|+|||||++.+.+...+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 346899999999999999999986533
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.64 E-value=0.018 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998885
No 446
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.63 E-value=0.02 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
=.++++|++|+|||||++.+.+...+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36789999999999999999986533
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.62 E-value=0.018 Score=48.87 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-+++++|++|+|||||++.+.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4478999999999999999999864
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.57 E-value=0.02 Score=43.28 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.57 E-value=0.02 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
..-.++++|++|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 344789999999999999999998653
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.56 E-value=0.022 Score=42.92 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999875
No 451
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.56 E-value=0.12 Score=41.34 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 452
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.54 E-value=0.016 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 468999999999999999999855
No 453
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.022 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|++.|+||+|||++++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999863
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.49 E-value=0.022 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.++++|++|+|||||++.+.+...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999986533
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.49 E-value=0.021 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.--+++.|++|+|||+|+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999887753
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.48 E-value=0.022 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.46 E-value=0.023 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 458
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.019 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998863
No 459
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.024 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|+||+|||+|.+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999864
No 460
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.41 E-value=0.023 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+++.|++|+|||++++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999988643
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.39 E-value=0.023 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3478999999999999999998755
No 462
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.38 E-value=0.027 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998864
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.37 E-value=0.026 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||+|...+....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 457899999999999999998643
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.36 E-value=0.027 Score=45.51 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.34 E-value=0.02 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3478999999999999999988754
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.30 E-value=0.027 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....|+++|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998754
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.028 Score=45.51 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
No 468
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.29 E-value=0.018 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 469
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.023 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|+||+|||+|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.18 E-value=0.027 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999764
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.024 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 472
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.15 E-value=0.026 Score=45.18 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----CC----CCCCCCC-----------CceeEEEE-----------EeCCeE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-----SL----SHNLKPT-----------EGFNITIL-----------QKGEYT 100 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~----~~~~~~t-----------~~~~~~~~-----------~~~~~~ 100 (224)
...++++|++|+||||++..+..... .. .+.+.+. .+...... ...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 45789999999999999988863211 00 0011110 00000000 014568
Q ss_pred EEEEEcCCchhHHH----HHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 101 LNIFELGGQENVRR----FWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 101 ~~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.++||+|...... .....+. ..+.+++|+|.+.. ...+.++...+ ..-+. .-++.||.|....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~----~~l~~-~giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF----SSVPV-NQYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT----SSSCC-CEEEEECTTTCSC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH----hcCCC-CEEEEeCCCcccc
Confidence 99999999654321 1112232 36788999988764 33333322222 11122 3456699998654
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.13 E-value=0.02 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999998754
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.13 E-value=0.026 Score=46.27 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...--+.++|++|+|||||+..+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999998653
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.029 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986533
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.01 E-value=0.023 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...|++.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.99 E-value=0.035 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|+++|++|||||||...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.98 E-value=0.032 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999988753
No 479
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.96 E-value=0.03 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998874
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.96 E-value=0.035 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.94 E-value=0.036 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||+|...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 368999999999999999998654
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.91 E-value=0.03 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998864
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.90 E-value=0.035 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+++.|++|+|||++.+.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998654
No 484
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.90 E-value=0.034 Score=45.37 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy12173 55 ILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~ 73 (224)
.+++|++|+|||+++.++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999874
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.89 E-value=0.034 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.86 E-value=0.015 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998853
No 487
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.86 E-value=0.036 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 488
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.032 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|++.|+||+|||+|.+++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999999864
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.79 E-value=0.038 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++.+.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.78 E-value=0.032 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998853
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.77 E-value=0.035 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|++|+|||++++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999864
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.76 E-value=0.037 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 493
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.76 E-value=0.043 Score=40.63 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 494
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.74 E-value=0.022 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 495
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.72 E-value=0.043 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.71 E-value=0.046 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+...-|++.|.+||||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.044 Score=42.21 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.65 E-value=0.039 Score=47.09 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++++|++|+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999988754
No 499
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.62 E-value=0.03 Score=45.30 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+|||+|++.+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 56899999999999999998
No 500
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.62 E-value=0.036 Score=48.06 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy12173 55 ILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~ 73 (224)
++++|++|||||||++.+.
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Done!