RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12173
(224 letters)
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 172 bits (438), Expect = 6e-55
Identities = 45/142 (31%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G PT GFN+ + +++LGG +
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVV---TTIPTIGFNVETVTYKNLKFQVWDLGGLTS 63
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ +TD +++VVDS D ++ ++ EL +L ++ L ++V ANKQD+ A
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
+++ E+ +L L ++ R+ +I
Sbjct: 124 MTSSEMANSLGLPALKDRKWQI 145
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 172 bits (438), Expect = 1e-54
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++L+LGLDN+GK++++ ++ G+ PT G N+ LQ + +++LGGQ
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVV---TTVPTVGVNLETLQYKNISFEVWDLGGQTG 78
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
VR +W YF DTD +++VVDS D ++ VA EL LL + L +L+ ANKQD+P A
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
S E+ L +SSI +R I
Sbjct: 139 ASEAEIAEQLGVSSIMNRTWTI 160
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 171 bits (436), Expect = 1e-54
Identities = 62/142 (43%), Positives = 99/142 (69%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL+LGLDN+GK+TL+KQ++S + S ++ PT+GFNI +Q + LN++++GGQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
A E+ L+L +I R +I
Sbjct: 133 APASEIAEGLNLHTIRDRVWQI 154
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 171 bits (436), Expect = 2e-54
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L LGLDN+GK+TL+ + + + L+PT L G F+LGG R
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +VF+VD+ADP + A +EL L L VP +++ NK D P A+S
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ AL L + + Q
Sbjct: 142 EAELRSALGLLNTTGSQRIEG 162
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 171 bits (435), Expect = 3e-54
Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++ ++GL SGK+T + I+SG + + PT GFN+ + KG T+ ++++GGQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
R W Y +V++VD+AD K+ + EL NLL +L +P+LV+ NK+D+PGA
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
L +E+ ++LS+I R+
Sbjct: 140 LDEKELIEKMNLSAIQDREICC 161
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 170 bits (434), Expect = 3e-54
Identities = 62/142 (43%), Positives = 97/142 (68%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ++
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGA
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
LS + AL+L SI S RI
Sbjct: 135 LSCNAIQEALELDSIRSHHWRI 156
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 170 bits (432), Expect = 4e-54
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 174 AEEVGVALDLSSISSRQHRI 193
A E+ L L S+ R I
Sbjct: 119 AAEITDKLGLHSLRHRNWYI 138
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 170 bits (433), Expect = 6e-54
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +L LGLDNSGK+T+I ++ N + L PT GF+I + + +F++ GQ
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRL--STVPILVIANKQDVP 169
R W Y+++ ++FV+DS+D ++ VA EL LL + +PIL ANK D+
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 170 GALSAEEVGVALDLSSISSRQHRI 193
A+++ +V L L +I + I
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHI 163
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 170 bits (432), Expect = 7e-54
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 45 SKVDDIFQRK---ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTL 101
+++ +F + ++I+GLDN+GK+T++ Q S + PT G N+ +
Sbjct: 6 TRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRF 62
Query: 102 NIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILV 161
++++GGQE++R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122
Query: 162 IANKQDVPGALSAEEVGVALDLSSISSRQHRI 193
ANKQDV ++ E+ L L+SI Q I
Sbjct: 123 FANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 169 bits (431), Expect = 8e-54
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K++I+GLDN+GK+T++ Q S + PT G N+ + ++++GGQE+
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+ ANKQDV
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
++ E+ L L+SI Q I
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHI 159
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 167 bits (426), Expect = 5e-53
Identities = 59/142 (41%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G KPT GFN+ L LN+++LGGQ +
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTS 74
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ DT ++FVVDS D ++ A+ EL +L ++ L +LV ANKQD PGA
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
LSA EV L+L + R I
Sbjct: 135 LSASEVSKELNLVELKDRSWSI 156
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 167 bits (426), Expect = 7e-53
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q +IL++GLD +GK+T++ ++ G PT GFN+ ++ ++++GGQ+
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNICFTVWDVGGQDK 85
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ +A EL+ +L + L +LV ANKQD+P A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
+ E+ L L + SR +
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYV 167
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 167 bits (426), Expect = 9e-53
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K++ LGLDN+GK+TL+ + PT L T F+LGG R
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W Y + +VF+VD AD +L + EL +L+ D+ ++ VPIL++ NK D P A+S
Sbjct: 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 143
Query: 174 AEEVGVALDLSSISSRQHRIKL 195
E + L ++ + + L
Sbjct: 144 EERLREMFGLYGQTTGKGSVSL 165
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 151 bits (383), Expect = 6e-45
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 28 WKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE 87
W + + +IL++GLD +GK+T++ ++ G PT
Sbjct: 142 WSLESSPAQNWTPPQPRGLFGK-KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTI 197
Query: 88 GFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN 147
GFN+ ++ + ++++GGQ+ +R W YF++T L+FVVDS D ++ A EL
Sbjct: 198 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 257
Query: 148 LLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRI 193
+L + L +LV ANKQD+P A++A E+ L L S+ R I
Sbjct: 258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 303
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 153 bits (387), Expect = 4e-44
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110
+ +IL+LGLD +GK+T++ ++ G + PT GFN+ + N++++GGQ+
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
+R W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 171 ALSAEEVGVALDLSSISSRQHRI 193
A+ E+ L L+ I R +
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYV 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 134 bits (338), Expect = 2e-39
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN---ITILQKGEYTLNIFELGG 108
QR +L +GL +SGK+ L ++ +G + + + + +L + +L G
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 109 QENVR-RFWNTYFEDTDLLVFVVDSAD-PSKLPVAAMELKNLLGDQRLS--TVPILVIAN 164
E++R + + + +VFVVDSA ++ A L +L D + +L+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 165 KQDVPGALSAEEVGVALDLSSISSRQHRIK 194
KQD+ A SA+ + L+ + R R
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSA 153
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 125 bits (315), Expect = 4e-36
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNT--------SLSHNLKPTEGFNITILQKGEYT----- 100
KI+ G SGK+T +K I S SL+ + T F+ L GE
Sbjct: 16 KIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGD-----QRLS 155
+++ + GQ D +VFV DSA +L A ++N+ + L
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLD 134
Query: 156 TVPILVIANKQDVPGALSAEEVGVALDLSS 185
VPI++ NK+D+P AL E V +D
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPEG 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 123 bits (310), Expect = 2e-35
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q I+I G NSGK++L+ +++ + + ++ G + + + G
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYDG-SGVTLVDFPGHVK 103
Query: 112 VRRFWNTYFED----TDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLST---VPILVIA 163
+R + Y + L+F+VDS DP KL A L ++L S + IL+
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163
Query: 164 NKQDVPGALSAEEVGVALDLSSISSRQHR 192
NK ++ A ++ AL+ + R
Sbjct: 164 NKSELFTARPPSKIKDALESEIQKVIERR 192
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 122 bits (308), Expect = 6e-35
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q I+I G NSGK++L+ +++ + + ++ G + + + G
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYDG-SGVTLVDFPGHVK 67
Query: 112 VRRFWNTYFED----TDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLST---VPILVIA 163
+R + Y + L+F+VDS DP KL A L ++L S + IL+
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 164 NKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200
NK ++ A ++ AL+ + R K +
Sbjct: 128 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE 164
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 93.5 bits (232), Expect = 6e-24
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNI-TILQKGEYTLNIFELGGQEN 111
+IL++GL SGKS++ K + + + L+ T I I++ GQ +
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81
Query: 112 VRRFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
F T L++V+D+ D + + + + + V +K D
Sbjct: 82 FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 82.7 bits (204), Expect = 4e-19
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQ-KGEYTLNIFELGGQ 109
K+L++G SGKS++ I S ++ + L T + L+ G TLN+++ GGQ
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 110 EN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIA 163
+ + + F+ +L+ V D L + K L ++ S I V+
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122
Query: 164 NKQDVPGALSAEEV 177
+K D+ EE+
Sbjct: 123 HKMDLVQLDKREEL 136
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 68.9 bits (168), Expect = 2e-14
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q K IL L ++ + + ++++ + + G + +
Sbjct: 68 QHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDD-------------QQGSRYS 114
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLST-VPILVI-ANKQD 167
V E D ++V ++ + + + S+ P+LV+ Q
Sbjct: 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG 174
Query: 168 VPGALSAEEVGVALDLSSIS 187
+ + L L+ ++
Sbjct: 175 DVKRMPCFYLAHELHLNLLN 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 67.8 bits (165), Expect = 1e-13
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+L++G+ GKS++ K + L + L+ T ++ L + EL GQ N
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYF 60
Query: 114 RFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
F+ LV+V+DS D + + + + ++ I V+ +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 63.2 bits (153), Expect = 4e-12
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA---AMELKNLLGDQRLSTVPILV 161
+ G + +V E D ++V ++ + + + S P+LV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 162 IA-NKQDVPGALSAEEVGVALDLSSIS 187
++ Q + + L L+ ++
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN 279
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 46.6 bits (111), Expect = 1e-06
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-------LQKGEYTLNIFEL 106
K++I+G SGK+TL++Q+ S T G ++ +K + LN+++
Sbjct: 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 107 GGQENVRRFWNT---YFEDTDLLVFVVDSADPSKLPVAAME--LKNLLGDQRLSTVPILV 161
G+E F++T + L + V D + V AM+ L N+ R S+ P+++
Sbjct: 64 AGRE---EFYSTHPHFMTQRALYLAVYDLSKGQAE-VDAMKPWLFNI--KARASSSPVIL 117
Query: 162 IANKQDVPGALSAEEV 177
+ DV +
Sbjct: 118 VGTHLDVSDEKQRKAC 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 2e-06
Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 55/239 (23%)
Query: 1 MSSKIKLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRK------ 54
+ S IK S + Y + R + + VS++ + +
Sbjct: 94 LMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 55 -----ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109
+LI G+ SGK+ + LS+ ++ F I + LN+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD-----VCLSYKVQCKMDFKI-------FWLNL----KN 191
Query: 110 EN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLSTVPILVI 162
N + ++ D + KL + EL+ LL + +LV+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL 250
Query: 163 ANKQDVPGALSAEEVGVALDLSS---ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218
N Q+ + A +LS +++R ++ T S H+S+ +
Sbjct: 251 LNVQN-------AKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTL 298
Score = 35.2 bits (80), Expect = 0.015
Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 53/224 (23%)
Query: 6 KLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGK 65
K+L+ + + AT +V + K L +
Sbjct: 267 KILLTTRFKQVTDFLSAATT----THISLDHHSMTLTP-DEVKSLL-LKYL-----DCRP 315
Query: 66 STLIKQISSGN--------TSLSHNLKPTEGFN-------ITILQKGEYTLNIFELGGQE 110
L +++ + N S+ L + + TI++ +LN+ E
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---SLNVLE---PA 369
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
R+ F+ L VF + +P + L + + + ++V+ +
Sbjct: 370 EYRK----MFDR--LSVFPPSA----HIPTILLSL---IWFDVIKSDVMVVV--NKLHKY 414
Query: 171 ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEA 214
+L V + I L N + LH S+V+
Sbjct: 415 SL------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 43.8 bits (103), Expect = 2e-05
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 26 QYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP 85
QY++ ++ + E + ++ K+ ++G +GK++L+KQ+ +
Sbjct: 21 QYFQSIEEARSKGEALVHLQEI------KVHLIGDGMAGKTSLLKQLIGE--TFDPKESQ 72
Query: 86 TEGFNITI------------LQKGEYTLNIFELGGQENVRRFWNT---YFEDTDLLVFVV 130
T G N+ + E + ++ GGQE + + + + + ++
Sbjct: 73 THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE---IMHASHQFFMTRSSVYMLLL 129
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
DS S ++ G P++V+ NK D
Sbjct: 130 DSRTDSNKHYWLRHIEKYGGK-----SPVIVVMNKIDE 162
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 42.4 bits (100), Expect = 3e-05
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
+ KI+++G GK+ L+ + ++ PT E + + + L++++ G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVFENYTASFEIDTQRIELSLWDTSG 64
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
+ D+D L+ F + + L ++L + +L
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPE---------TLDSVLKKWKGEIQEFCPNTKML 115
Query: 161 VIANKQD 167
++ K D
Sbjct: 116 LVGCKSD 122
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 41.4 bits (98), Expect = 6e-05
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE-YTLNIFELGGQEN 111
K+ I+G +SGKS L+ + +G + P G F I+ G+ Y L I + GG
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTG--TYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP- 78
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQR----LSTVPILVIANK 165
+ D + VF ++ + + N S VP++++ +
Sbjct: 79 --EL--QFAAWVDAVVFVFSLEDEISFQ------TVYNYFLRLCSFRNASEVPMVLVGTQ 128
Query: 166 QDVPGA 171
+ A
Sbjct: 129 DAISAA 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 6e-05
Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 66/188 (35%)
Query: 34 STPEDEGFEEVSKVDDIFQ-----RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG 88
++ + K ++ + R + D S L + + GN L
Sbjct: 107 KLLQEND-TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--------- 156
Query: 89 FNITILQKGEYTLNIFELGGQENV-------RRFWNTY-------FEDTD--LLVFVVDS 132
IF GGQ N R + TY + + L + +
Sbjct: 157 ----------VA--IF--GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 133 ADPSKLPVAAMELKNLL-------GDQRLSTVPI-------------LVIANKQDV-PGA 171
D K+ + + L L ++PI +V A PG
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 172 LSAEEVGV 179
L + G
Sbjct: 263 LRSYLKGA 270
Score = 34.3 bits (78), Expect = 0.034
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 62/157 (39%)
Query: 97 GEYT-L----NIFELGGQENVRRFWNTYFEDTDLLVFV----VDSADP------SKLPVA 141
GEY L ++ E +VF + A P S +
Sbjct: 1765 GEYAALASLADVMS--------------IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 142 AM---ELKNLLGDQRLSTV---------PILVIAN-----KQDV-PGALSA-EEVGVALD 182
A+ + + L V ++ I N +Q V G L A + V L+
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 183 LSSISSRQHRIKLIATQAPSNLHHLHVSV-VEAEQAM 218
+ +I +I L S+ +E +
Sbjct: 1871 FIKL----QKIDII---------ELQKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 2.6
Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 47/174 (27%)
Query: 71 QISSGNTSLSHNLK-PT----------EGFNITI------LQKGEYTLNIFELGGQENVR 113
+S G SL H L PT E FN + + EL V
Sbjct: 10 TLSHG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-----VG 62
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGD-QR--LSTVPI--LVIANKQDV 168
+F L +V +PSK+ L L + + L I L Q+
Sbjct: 63 KF----------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 169 PGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA-MYAL 221
L + + + I++R + ++ S L V A + A+
Sbjct: 113 DTTLVKTKELIK---NYITARIMAKRPFDKKSNSAL----FRAVGEGNAQLVAI 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 42.1 bits (99), Expect = 6e-05
Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Query: 30 KRRQSTPE--DEGFEEVSKVDDI--FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP 85
+ ++ E + + + ++I G N GKSTL+K +++ ++
Sbjct: 141 RDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200
Query: 86 TEGFNITILQKGEYTLNIFELGG-------QENV--RRFWNTYFEDTDLLVFVVDSADPS 136
T G N+ + G + I + G + N ++ +L++++ D ++
Sbjct: 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC 260
Query: 137 KLPVAAM-----ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV 177
P+ E+ D +P LV+ NK DV + + +
Sbjct: 261 GFPLEEQIHLFEEVHGEFKD-----LPFLVVINKIDVADEENIKRL 301
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 41.3 bits (97), Expect = 7e-05
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ ++ + + ++ ++ G+ L +++ GQE
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
+ R + TD L+ F + S + E++ PI+++ K
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-----HHCPNTPIILVGTKL 119
Query: 167 D 167
D
Sbjct: 120 D 120
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 39.5 bits (92), Expect = 3e-04
Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110
+ K++++G GK+ +++ ++ ++ E + + + + L++++ G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAM---ELKNLLGDQRLSTVPILVIANK 165
+ D+D LL F + + + E+ + +L+I K
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPS-----TRVLLIGCK 140
Query: 166 QD 167
D
Sbjct: 141 TD 142
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 39.3 bits (92), Expect = 3e-04
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
++K++++G GK+ L+ S + PT E + I G+ L +++ G
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVFENYVADIEVDGKQVELALWDTAG 82
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
QE+ R + DTD L+ F VDS D L+N+ VPI+
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPD---------SLENIPEKWVPEVKHFCPNVPII 133
Query: 161 VIANKQD 167
++ANK+D
Sbjct: 134 LVANKKD 140
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 40.2 bits (93), Expect = 3e-04
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140
T G T Q + ++F++GGQ + RR W F D ++FVV S+ + +
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 141 ---------AAMEL-KNLLGDQRLSTVPILVIANKQDV 168
A+ L K++ ++ L T+ +++ NKQD+
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
Score = 29.4 bits (65), Expect = 0.92
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 14 GIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQIS 73
G + + T K +R++ + E + K ++L+LG SGKST++KQ+
Sbjct: 2 GCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMR 61
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 39.6 bits (92), Expect = 4e-04
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD------ 134
PT G + ++GGQ + RR W FE+ ++F+V ++
Sbjct: 149 RVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208
Query: 135 ----PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+++ + + ++ +++ NK+D+
Sbjct: 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
Score = 30.8 bits (69), Expect = 0.32
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 52 QRKILILGLDNSGKSTLIKQI 72
+ K+L+LG SGKST IKQ+
Sbjct: 7 ELKLLLLGTGESGKSTFIKQM 27
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 38.9 bits (91), Expect = 5e-04
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
K +++G GK++L+ ++ PT + F+ + G L + + G
Sbjct: 20 GVKCVLVGDGAVGKTSLVVSYTTN--GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIAN 164
Q+ + + +TD LL F V S + E++ PI+++
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-----CHCPKAPIILVGT 132
Query: 165 KQD 167
+ D
Sbjct: 133 QSD 135
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 39.0 bits (91), Expect = 5e-04
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ ++ + PT + ++ ++ G+ L +++ GQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYI--PTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
+ R + TD L+ F + S + E++ PI+++ K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-----HHCPNTPIILVGTKL 144
Query: 167 D 167
D
Sbjct: 145 D 145
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 38.6 bits (89), Expect = 0.001
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV---------AAMEL-KNL 148
+F++GGQ N RR W FE ++F ++ + EL +
Sbjct: 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242
Query: 149 LGDQRLSTVPILVIANKQDV 168
L ++ NK D+
Sbjct: 243 LKQPCFEKTSFMLFLNKFDI 262
Score = 31.6 bits (71), Expect = 0.19
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 52 QRKILILGLDNSGKSTLIKQI 72
RK+L+LG SGKST+ KQI
Sbjct: 9 IRKLLLLGAGESGKSTIFKQI 29
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 37.8 bits (88), Expect = 0.001
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
++K++I+G GK+ L+ S + PT E + I G+ L +++ G
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYIADIEVDGKQVELALWDTAG 82
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
QE+ R + DTD L+ F +DS D L+N+ VPI+
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPD---------SLENIPEKWTPEVKHFCPNVPII 133
Query: 161 VIANKQD 167
++ NK+D
Sbjct: 134 LVGNKKD 140
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 37.1 bits (86), Expect = 0.002
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K++++G GK++L+ + G S+ PT E + + + KG+ L+I++ GQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYT--PTVFERYMVNLQVKGKPVHLHIWDTAGQD 93
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPILVI 162
+ R ++ D LL F V S + N+ + VPI+V+
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPN---------SFDNIFNRWYPEVNHFCKKVPIIVV 144
Query: 163 ANKQD 167
K D
Sbjct: 145 GCKTD 149
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.8 bits (86), Expect = 0.002
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + R W E D ++F+VD V E+ + + +PI V+ NK D+
Sbjct: 71 RIGIERAWQ-EIEQADRVLFMVDGTTT--DAVDPAEIWPEFIARLPAKLPITVVRNKADI 127
Query: 169 PGALSAEEVGVALDLSSISSRQH 191
G L +S+R
Sbjct: 128 TGETLGMSEVNGHALIRLSARTG 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 37.0 bits (86), Expect = 0.002
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
+ KI+++G GK+ L+ + ++ PT E + + + L++++ G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVFENYTASFEIDTQRIELSLWDTSG 85
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
+ D+D L+ F + + L ++L + +L
Sbjct: 86 SPYYDNVRPLSYPDSDAVLICFDISRPE---------TLDSVLKKWKGEIQEFCPNTKML 136
Query: 161 VIANKQD 167
++ K D
Sbjct: 137 LVGCKSD 143
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 37.1 bits (86), Expect = 0.002
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 62/197 (31%)
Query: 49 DIFQRKILILGLDNSGKSTLIKQISSGN--------TSLSHNL----------------- 83
+ ++ I++ G N GKS+ + +S N T+ + +
Sbjct: 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPG 85
Query: 84 ---KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140
+ E N TI L ++ +++F++D ++ L +
Sbjct: 86 LLDRAFENRN-TIEMTTITAL--------AHING----------VILFIIDISEQCGLTI 126
Query: 141 AA--MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198
++ S I++ NK D S + IK I
Sbjct: 127 KEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSI-----------DNKLLIKQILD 173
Query: 199 QAPSNLHHLHVSVVEAE 215
+ + S +
Sbjct: 174 NVKNPIKFSSFSTLTGV 190
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 36.7 bits (85), Expect = 0.002
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
K +++G GK+ L+ ++ + PT + + +++ G+ Y L +++ G
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYAND--AFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIAN 164
QE+ R + TD L+ F V + + ELK + VP L+I
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-----EYAPNVPFLLIGT 130
Query: 165 KQD 167
+ D
Sbjct: 131 QID 133
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 37.4 bits (86), Expect = 0.003
Identities = 18/98 (18%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140
+PT+G + + + ++GGQ + R+ W F+ ++F+V S++ ++ +
Sbjct: 183 LARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLM 242
Query: 141 ---------AAMEL-KNLLGDQRLSTVPILVIANKQDV 168
++ + + ++ ++ S V I++ NK D+
Sbjct: 243 EDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 36.5 bits (85), Expect = 0.003
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
KI+++G GK+ L+ S G ++ PT E F+ + K E + L++++ GQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYV--PTVFENFSHVMKYKNEEFILHLWDTAGQE 82
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPILVI 162
R + D+D LL F V++ N+ + T +++
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRT---------SFDNISTKWEPEIKHYIDTAKTVLV 133
Query: 163 ANKQD 167
K D
Sbjct: 134 GLKVD 138
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 36.2 bits (84), Expect = 0.003
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K + +G GK+ L+ +S + PT + F+ ++ G L +++ GQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYV--PTVFDNFSANVVVNGATVNLGLWDTAGQE 67
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPILVI 162
+ R + D +L F + S +N+ VPI+++
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKA---------SYENVSKKWIPELKHYAPGVPIVLV 118
Query: 163 ANKQD 167
K D
Sbjct: 119 GTKLD 123
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 36.6 bits (84), Expect = 0.004
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD------ 134
T G T + +F++GGQ + R+ W FE ++F V +D
Sbjct: 175 RTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLA 234
Query: 135 ----PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+++ + ++ ++ + I++ NK+D+
Sbjct: 235 EDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
Score = 27.4 bits (60), Expect = 4.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 54 KILILGLDNSGKSTLIKQI 72
K+L+LG SGKST++KQ+
Sbjct: 34 KLLLLGAGESGKSTIVKQM 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 34.9 bits (81), Expect = 0.009
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--F---NITILQKGEYTLNIFELGG 108
K++ILG GK++L+ + + S + K T G F +T+ T+ +++ G
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANK 165
QE + ++ D V V D + S + E T P +++ NK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 166 QDVPGA 171
D +
Sbjct: 128 IDAEES 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.0 bits (81), Expect = 0.013
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPT-----EGFNITILQKGEYTL----NIFE 105
I++ G N GKS+ + + N S+ + T + + G TL + +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKS-MELHPIGPVTLVDTPGLDD 95
Query: 106 LG--GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163
+G G+ V + F D + V DSA ++ NL + +P +V+
Sbjct: 96 VGELGRLRVEKARRV-FYRADCGILVTDSAPTP----YEDDVVNLF---KEMEIPFVVVV 147
Query: 164 NKQD 167
NK D
Sbjct: 148 NKID 151
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 34.6 bits (80), Expect = 0.013
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQ--KGEYTLNIFELGGQ 109
K++++G +GK+T +K+ +G + T G + + +G N+++ GQ
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
E + Y+ + + D +P +L + + +PI++ NK
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-----IPIVLCGNKV 129
Query: 167 DV 168
D+
Sbjct: 130 DI 131
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 34.0 bits (79), Expect = 0.015
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ K++++G GKS L Q+ + + PT + ++ GE L+I + G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD--PTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
QE + Y + L VF ++ + + + + VP++++ NK
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAIN--NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118
Query: 167 DVPG-ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
D+ + + + L +R + I I T A +
Sbjct: 119 DLAARTVESRQ-AQDL------ARSYGIPYIETSAKTRQG 151
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.1 bits (79), Expect = 0.030
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 48/149 (32%)
Query: 57 ILGLDNSGKSTLIKQISSGN--------TSLSHNL-----KPTEGFNIT----ILQ---- 95
++G N+GKS+L+ ++ + T+LS NL E F + I++
Sbjct: 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221
Query: 96 -KGEYTLNIFELGGQENVRRFWNTYF----EDTDLLVFVVD-SADP-SKLPVAAMELKNL 148
KG LG + F T +L++V+D + +P L E+
Sbjct: 222 GKG--------LGLE----------FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 263
Query: 149 LGDQRLSTVPILVIANKQDVPGALSAEEV 177
D L P LV NK D+ + + +
Sbjct: 264 --DPALLRRPSLVALNKVDLLEEEAVKAL 290
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.1 bits (79), Expect = 0.030
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + R E D+++FV+D++ P E + +L +R+ LV+ NK DV
Sbjct: 311 RLGIERTLQ-EIEKADIVLFVLDASSP-----LDEEDRKIL--ERIKNKRYLVVINKVDV 362
Query: 169 PGALSAEEVGVALDLS----SISSRQH 191
++ EE+ L IS+ +
Sbjct: 363 VEKINEEEIKNKLGTDRHMVKISALKG 389
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.6 bits (78), Expect = 0.038
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ V R DL++ +D+A E+ + + P++++ NK D+
Sbjct: 291 KIGVERSRQ-AANTADLVLLTIDAATG--WTTGDQEIYEQVKHR-----PLILVMNKIDL 342
Query: 169 PGALSAEEVGVALDLS---SISSRQH 191
+ +++ ++ Q
Sbjct: 343 VEKQLITSLEYPENITQIVHTAAAQK 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 33.0 bits (76), Expect = 0.039
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
++++ G GKS+L+ + G ++ PT + I TL I + G
Sbjct: 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--PTIEDTYRQVISCDKSVCTLQITDTTG 65
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGD-----QRLSTVPILV 161
+LVF V S + EL + + +P+++
Sbjct: 66 SHQFPAMQRLSISKGHAFILVFSVTSKQSLE------ELGPIYKLIVQIKGSVEDIPVML 119
Query: 162 IANKQD 167
+ NK D
Sbjct: 120 VGNKCD 125
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 32.9 bits (76), Expect = 0.040
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ K++++G D GKS L Q+ + ++ PT + ++ GE L+I + G
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIAN 164
QE + Y + L VF +++ S + ++K + + VP++++ N
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSED---VPMVLVGN 117
Query: 165 KQDVPG-ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
K D+P + ++ L +R + I I T A +
Sbjct: 118 KCDLPSRTVDTKQ-AQDL------ARSYGIPFIETSAKTRQG 152
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 32.9 bits (76), Expect = 0.041
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 18/161 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
K++++G GKS L Q ++ PT + G L+I + G
Sbjct: 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYD--PTIEDSYTKICSVDGIPARLDILDTAG 66
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
QE Y LLVF ++ S V + +L + P++++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQ-SFNEVGKL-FTQILRVKDRDDFPVVLVGNKA 124
Query: 167 DVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
D+ + E A H + A L+
Sbjct: 125 DLESQRQVPRSE-ASAF------GASHHVAYFEASAKLRLN 158
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 33.1 bits (76), Expect = 0.047
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K + +G GK+ ++ +S + PT + F+ + G+ L +++ GQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD-----PSK-LPVAAMELKNLLGDQRLSTVPILVI 162
+ R + D +L F + S K +P EL+ + VPI+++
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMP----ELR-----RFAPNVPIVLV 119
Query: 163 ANKQD 167
K D
Sbjct: 120 GTKLD 124
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 32.6 bits (75), Expect = 0.049
Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ K++++G GKS L Q+ + ++ PT + ++ GE L+I + G
Sbjct: 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIAN 164
QE + Y + L VF ++++ S + + ++K + VP++++ N
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSD---DVPMVLVGN 134
Query: 165 KQDVPG-ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
K D+P + ++ L ++ + I I T A +
Sbjct: 135 KCDLPTRTVDTKQ-AHEL------AKSYGIPFIETSAKTRQG 169
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 32.5 bits (75), Expect = 0.050
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
++ + G GKS+L+ + G S+ PT + + I TL I + G
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--PTVEDTYRQVISCDKSICTLQITDTTG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAM--ELKNLLGDQRLSTVPILVIAN 164
+LV+ + S S + + ++ + GD ++PI+++ N
Sbjct: 61 SHQFPAMQRLSISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDV--ESIPIMLVGN 117
Query: 165 KQD 167
K D
Sbjct: 118 KCD 120
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 32.1 bits (73), Expect = 0.067
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGEYT--LNIFELGGQ 109
K+++LG GKS+++ + S + + + +PT G F + E+T I++ GQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
E Y+ + + V D P A +K L +Q + I ++ NK D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDXL 121
Query: 170 GALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
+ VA + + + + T A +
Sbjct: 122 QEGGERK--VAREEGEKLAEEKGLLFFETSAKTG 153
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 32.1 bits (74), Expect = 0.068
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGGQ 109
K++++G GKS L Q + +PT+ + ++ GE ++I + GQ
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 110 ENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
E+ + YF + L VF + + S A + +L + VP L++ NK D
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEME-SFAATADF-REQILRVKEDENVPFLLVGNKSD 120
Query: 168 VPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
+ +S EE + Q + + T A + +
Sbjct: 121 LEDKRQVSVEE-AKNR------ADQWNVNYVETSAKTRAN 153
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 32.1 bits (74), Expect = 0.075
Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ K+++LG GKS L Q G ++ PT + + + L I + G
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAM--ELKNLLGDQRLSTVPILVIAN 164
E + Y ++ LV+ + + + + + ++ + + VP++++ N
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTED---VPMILVGN 116
Query: 165 KQD 167
K D
Sbjct: 117 KCD 119
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 32.2 bits (74), Expect = 0.081
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNI-TILQKGE-YTLNIFELGGQ 109
K++ILG GK++L+ Q + S + K T G F ++ T+ I++ GQ
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L E + P +V+ NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 167 DVP 169
D+
Sbjct: 128 DLE 130
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 32.1 bits (74), Expect = 0.087
Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 22/170 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
K++++G GKS L Q ++ PT + + L++ + G
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--PTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
QE Y D L+V+ V D + + +L + + P++++ANK
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVT--DKASFEHVDRFHQLILRVKDRESFPMILVANKV 133
Query: 167 DVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEA 214
D+ ++ ++ G + + ++ I I T A ++V +
Sbjct: 134 DLMHLRKVTRDQ-GKEM------ATKYNIPYIETSAKDP----PLNVDKT 172
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 32.2 bits (74), Expect = 0.096
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--QKGEYTLNIFEL 106
+ GL+ +GK+TL+ +++ T G + + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNA-------YEPATSG-TVNLFGKMPGKVGYSAETV 95
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 31.7 bits (73), Expect = 0.11
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNI-TILQKGE-YTLNIFELGGQ 109
K+++LG GKS+L+ + + T G F + G T+ I++ GQ
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
E R ++ +D + D L E + + P +++ NK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 167 DVP 169
D+
Sbjct: 127 DIS 129
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 31.3 bits (72), Expect = 0.13
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
RKI ILG + GKS+L Q G S++ PT F I G+ Y L + + G
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYD--PTIENTFTKLITVNGQEYHLQLVDTAG 63
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIAN 164
Q+ F TY D + +LV+ V S S + V +L +++G + +PI+++ N
Sbjct: 64 QDEYSIFPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQ---IPIMLVGN 119
Query: 165 KQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
K+D+ +S EE G AL + + + A N
Sbjct: 120 KKDLHMERVISYEE-GKAL------AESWNAAFLESSAKENQT 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.8 bits (73), Expect = 0.16
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 122 DTDLLVFVVDSADPSKLPVAAME-LKNLLGDQRLSTVPILVIANKQD 167
+D L+ V+DS L + ++ +L + +S PILV NK D
Sbjct: 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.1 bits (71), Expect = 0.19
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGGQE 110
K++++G GKS L Q + +PT+ + ++ GE ++I + GQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADSYRKKVVLDGEEVQIDILDTAGQE 73
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ + YF + L VF + + A + +L + VP L++ NK D+
Sbjct: 74 DYAAIRDNYFRSGEGFLCVFSIT--EMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 169 PG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
+S EE + Q + + T A + +
Sbjct: 132 EDKRQVSVEE-AKNR------AEQWNVNYVETSAKTRAN 163
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 30.5 bits (70), Expect = 0.21
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT-EGFNI-TILQKGE-YTLNIFELGG 108
+ K+++LG GKS L Q +G ++ PT E F I L I + G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--PTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
E + Y ++ +LV+ + + S + M ++ +R VP++++ NK
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQ-SFQDIKPM-RDQIIRVKRYEKVPVILVGNKV 118
Query: 167 DVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
D+ +S+ E G AL + + + T A S
Sbjct: 119 DLESEREVSSSE-GRAL------AEEWGCPFMETSAKSKTM 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.8 bits (69), Expect = 0.24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 54 KILILGLDNSGKSTLIKQI 72
KI+I G GK+TL+K+I
Sbjct: 2 KIIITGEPGVGKTTLVKKI 20
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 30.6 bits (70), Expect = 0.24
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGGQ 109
K++++G GKS L Q + +PT+ + ++ GE ++I + GQ
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 110 ENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
E+ + YF + L VF + + S A + +L + VP L++ NK D
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEME-SFAATADF-REQILRVKEDENVPFLLVGNKSD 134
Query: 168 VPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
+ +S EE + Q + + T A + +
Sbjct: 135 LEDKRQVSVEE-AKNR------AEQWNVNYVETSAKTRAN 167
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 30.3 bits (69), Expect = 0.28
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGGQE 110
++ +LG SGKS+LI + +G+ L+ TE + +L G+ + + I E G
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSY---QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSAD 134
+ D + VF ++ +
Sbjct: 66 ---DA--KFSGWADAVIFVFSLEDEN 86
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 30.5 bits (69), Expect = 0.34
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 5 IKLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRK----ILILGL 60
+ + S+ A Y + T + E +K ++K +L++G
Sbjct: 21 KIASVTLLGILFFSITGLAAKYYITVQNTFTKINVPLETSNKTTSDLEKKKPFSVLLMGS 80
Query: 61 DNSGKST 67
D T
Sbjct: 81 DARPGET 87
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.6 bits (70), Expect = 0.37
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
E +RR + DL+++++D +L E++ L L +ANK D
Sbjct: 300 HEGIRRSRM-KMAEADLILYLLDLGTE-RLDDELTEIRELK--AAHPAAKFLTVANKLDR 355
Query: 169 PGALSAEE 176
A
Sbjct: 356 AANADALI 363
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 0.58
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF 89
R + + G GK+TLI + S L + P +GF
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASE---VLKSSGVPVDGF 35
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.9 bits (68), Expect = 0.61
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 121 EDTDLLVFVVDSADP-SKLPVAAM-----ELKNLLGDQRLSTVPILVIANKQDVPGA 171
E T ++V V+D + + P EL + RL+ P +++ANK D+P A
Sbjct: 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEY--NLRLTERPQIIVANKMDMPEA 289
Score = 29.9 bits (68), Expect = 0.65
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 57 ILGLDNSGKSTLIKQISS 74
++G + GKSTL+ +SS
Sbjct: 163 LVGFPSVGKSTLLSVVSS 180
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 29.5 bits (67), Expect = 0.63
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
RK++ILG GK++L Q G S + PT ++ + + + L++ + G
Sbjct: 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAM--ELKNLLGDQRLSTVPILVIAN 164
Q+ ++ +LV+ V S S + ++ +L G R VP++++ N
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTR---VPVVLVGN 137
Query: 165 KQD 167
K D
Sbjct: 138 KAD 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.7 bits (66), Expect = 0.73
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFE 105
F+ ++++G GKSTLI + + P+ T+ Q + + I E
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-QVEQSKVLIKE 60
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.7 bits (66), Expect = 0.77
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 22/141 (15%)
Query: 42 EEVSKVDDIFQR------KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ 95
S + D + + + G SGKS+ I + G + T G ++
Sbjct: 53 LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL-RGIGNEEEGAAKT-GVVEVTME 110
Query: 96 KGEYT------LNIFELGGQENVRRFWNTYFEDTDLL---VFVVDSADPSKLPVAAMELK 146
+ Y + ++L G + +TY E F++ SA K + K
Sbjct: 111 RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI-AK 169
Query: 147 NLLGDQRLSTVPILVIANKQD 167
+ ++ + K D
Sbjct: 170 AISMMKK----EFYFVRTKVD 186
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.6 bits (66), Expect = 0.86
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT 86
+ + ++G N GKST I ++ + + N+ T
Sbjct: 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITT 194
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 28.7 bits (65), Expect = 1.0
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 21/163 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ + ILG +GKS L + + ++ P ++ + L + +
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYD--PNLEDTYSSEETVDHQPVHLRVMDTAD 78
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIAN 164
+ R Y L+V+ VDS S L + + ++P L++ N
Sbjct: 79 LDTPRNCE-RYLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQ-RSIPALLLGN 135
Query: 165 KQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
K D+ ++ E GVAL + + A +
Sbjct: 136 KLDMAQYRQVTKAE-GVAL------AGRFGCLFFEVSACLDFE 171
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 28.7 bits (65), Expect = 1.3
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHN--LKPTEG 88
+L+ G SGKSTL++ + ++PT G
Sbjct: 35 CLLVAGNTGSGKSTLLQIV---------AGLIEPTSG 62
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK 96
+LG + GKSTL+ L +P +G I + Q
Sbjct: 36 VLGQNGCGKSTLLD-------LLLGIHRPIQG-KIEVYQS 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 28.6 bits (65), Expect = 1.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
E+ D+++F++D A P +N + P++V+ NK D
Sbjct: 90 LEEADVILFMID-ATEGWRPRDEEIYQNFIKPLN---KPVIVVINKID 133
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.4 bits (64), Expect = 1.4
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 109 QENVRRFWNTYFEDT----DLLVFVVDSADPSKLPVAAMELKNLLGDQ------RLSTVP 158
QE ++ + ED D+ V VVD ++ + + D R +P
Sbjct: 65 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124
Query: 159 ILVIANKQD 167
+V NK D
Sbjct: 125 TIVAVNKLD 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 185 SISSRQHRIKLIATQ-APSNLHHLHV-SVVE 213
++ Q +KL A AP+ L + + +E
Sbjct: 21 ALKKLQASLKLYADDSAPA----LAIKATME 47
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.8 bits (64), Expect = 1.5
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 49 DIFQRK-------ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTL 101
DI++R IL +GKS K + + I I + EY
Sbjct: 25 DIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV-------IIIDPEREYKE 77
Query: 102 NIFELGGQ 109
+LGG
Sbjct: 78 MCRKLGGV 85
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 28.7 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 11/37 (29%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHN--LKPTEG 88
ILG + GKSTL + N LKP+ G
Sbjct: 36 VTAILGGNGVGKSTLFQNF---------NGILKPSSG 63
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 28.6 bits (64), Expect = 1.7
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 26 QYWKKRRQSTPEDEG-----FEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGN---- 76
K R + +E V ++ + R ++ILG K + + S
Sbjct: 69 WERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILG---PLKDRINDDLISEYPDKF 125
Query: 77 -TSLSH 81
+ + H
Sbjct: 126 GSCVPH 131
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 27.9 bits (63), Expect = 1.8
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--F---NITILQKGEYTLNIFELGG 108
KI++LG SGK++L + + K T G F IT+ TL I+++GG
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANK 165
Q + + Y ++ V D + L +K + ++ + + ++ NK
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK-VSEESETQPLVALVGNK 124
Query: 166 QD 167
D
Sbjct: 125 ID 126
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 28.4 bits (63), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 52 QRKILILGLDNSGKSTLIKQI 72
+ ++G N GKST I +I
Sbjct: 162 GGDVYVVGCTNVGKSTFINRI 182
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 28.1 bits (62), Expect = 1.9
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 22 YATYQYWKKRRQSTPEDEGFE---EVSKVDDIFQR------KILILGLDNSGKSTL 68
Y +YW +R Q + ++ + S + + +IL+LG G S L
Sbjct: 4 YREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLG---CGNSAL 56
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein
STRU initiative; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Length = 113
Score = 27.2 bits (60), Expect = 2.1
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV-------- 177
+VF +D D S++ + ++NL+ D L +V I V+A V E
Sbjct: 6 VVFHIDEDDESRVLLLISNVRNLMAD--LESVRIEVVAYSMGVNVLRRDSEYSGDVSELT 63
Query: 178 --GVALDLSSISSRQHRIK 194
GV S + R +
Sbjct: 64 GQGVRFCACSNTLRASGMD 82
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 28.4 bits (63), Expect = 2.2
Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQ 109
K +++G GK+ L+ ++ + + ++ ++ G+ L +++ G
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 110 ENVRRFWNTYFEDTD--LLVFVVDSAD-----PSK-LPVAAMELKNLLGDQRLSTVPILV 161
E+ R + TD L+ F + S +K P E++ PI++
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP----EVR-----HHCPNTPIIL 264
Query: 162 IANKQD 167
+ K D
Sbjct: 265 VGTKLD 270
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.8 bits (63), Expect = 2.4
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 120 FEDTDLLVFVVDSADPSKLPVAAME-LKNLLGDQRLSTVPILVIANKQD 167
D +L++FVV+ + + L+ P+++ NK D
Sbjct: 86 IGDVELVIFVVEGTRWTPDDEMVLNKLRE-------GKAPVILAVNKVD 127
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 27.5 bits (62), Expect = 2.6
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 20/156 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
++++LG GK++L + H + + T+ GE TL + + E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHE--QLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 111 NVRRFW--NTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
+ + W + + ++V+ + AD A+ L + VPI+++ NK
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSI--ADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 167 DVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQA 200
D+ +S EE G A + K I T A
Sbjct: 122 DLARCREVSVEE-GRAC------AVVFDCKFIETSA 150
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.7 bits (61), Expect = 2.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 42 EEVSKVDDIFQRKILILGLDNSGKSTLIKQI 72
+E+ K+ + L+LGL +GKS++IK
Sbjct: 20 KEIEKLKGLRAPITLVLGLRRTGKSSIIKIG 50
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 27.6 bits (62), Expect = 3.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 144 ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV 177
+L + R P+++ ANK D + +
Sbjct: 202 DLLAFASEIRRVNKPMVIAANKADAASDEQIKRL 235
Score = 26.8 bits (60), Expect = 5.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 54 KILILGLDNSGKSTL 68
+I ++G N GKST
Sbjct: 2 EIGVVGKPNVGKSTF 16
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 27.3 bits (61), Expect = 3.1
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNI-TILQKGE-YTLNIFEL--G 107
K+ ++G GKS LI +S + + T G + + ++ +F L
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 108 GQENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIAN 164
G + + + Y+ + V D + LK+ D+ + +++AN
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE-RPLRAVLVAN 140
Query: 165 KQDVPG---ALSAEE 176
K D+P + +
Sbjct: 141 KTDLPPQRHQVRLDM 155
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 27.7 bits (62), Expect = 3.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 54 KILILGLDNSGKSTLIKQISSGN 76
+ LI+G+ N GKSTLI +++ N
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKN 144
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 27.3 bits (61), Expect = 3.3
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT---EGFNITILQKGEYT--LNIFELGG 108
KI ++G GK+T I ++ G ++ T +T L N+++ G
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
QE + Y+ + D A +K + PI+V ANK D+
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ-AVVGNEAPIVVCANKIDI 129
Query: 169 P 169
Sbjct: 130 K 130
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 27.7 bits (61), Expect = 3.3
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 53 RKILIL-GLDNSGKSTLIKQI 72
+KI++ G SGKST ++
Sbjct: 2 KKIILTIGCPGSGKSTWAREF 22
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 27.7 bits (61), Expect = 3.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 54 KILILGLDNSGKSTLIKQIS------SGNTSLSHNLK 84
+I ++G + +GKSTLI ++ SG N +
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCR 737
Score = 27.7 bits (61), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 53 RKILILGLDNSGKSTLIKQISSG 75
R+ I G + GKSTL++ I++G
Sbjct: 462 RRYGICGPNGCGKSTLMRAIANG 484
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 4.0
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 51 FQRKILILGLDNSGKSTLIKQI-------SSGNTSLSHNLKPTEGFNITILQKGE----Y 99
F+ ++++G GKSTLI + + + ++ T + ++ E
Sbjct: 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 100 TLNIFELGGQEN----------VRRFWNTYFEDT 123
L + + G + + + + FE
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERY 110
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 27.2 bits (61), Expect = 4.1
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE-YTLNIFELGG 108
+ K+ I G GKS L+ + + ++ PT + E ++ I + G
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--PTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 109 QENVRRFWNT--YFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
QE + + +LV+ + S V + L ++ V ++++ N
Sbjct: 86 QE---DTIQREGHMRWGEGFVLVYDITDRG-SFEEVLPL-KNILDEIKKPKNVTLILVGN 140
Query: 165 KQD 167
K D
Sbjct: 141 KAD 143
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 27.2 bits (61), Expect = 4.3
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 54 KILILGLDNSGKSTLI 69
++LI+G+ N+GKST+I
Sbjct: 101 RVLIVGVPNTGKSTII 116
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 27.2 bits (60), Expect = 4.3
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 20/108 (18%)
Query: 41 FEEVSKVDDIFQRKILILGLDNSGKSTLI-----------KQISSGNTSLSHNLKPTEGF 89
K +D+ IL++G GKS+ + S + GF
Sbjct: 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF 87
Query: 90 NITILQKGEYTLNIFELGG-----QENVRRFWNTYFEDTDLLVFVVDS 132
+ I+ T + E G ++ F D L V +D+
Sbjct: 88 TLNIID----TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA 131
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 26.7 bits (59), Expect = 4.6
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 53 RKILIL-GLDNSGKSTLIKQISSGNTSLSH 81
+KI++ G SGKST ++ + N +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN 31
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.3 bits (59), Expect = 5.3
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 121 EDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
ED ++++F VD + VA L R P++++A K D
Sbjct: 78 EDAEVVLFAVDGRAELTQADYEVA-----EYL---RRKGKPVILVATKVD 119
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 26.7 bits (60), Expect = 5.4
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNI-TILQKGE-YTLNIFELGGQ 109
K++++G GKS++I++ G + + K T G F I E L +++ GQ
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
E Y+ V V + D + + + + +P ++ NK D+
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLL 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 26.3 bits (59), Expect = 5.5
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE-YTLNIFELGGQEN 111
K++++G GKSTL +H ++ +E I+ E TL ++++ Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG- 62
Query: 112 VRRFWNT----YFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165
+ D L+VF D L L + +P++++ NK
Sbjct: 63 --DAGGWLQDHCLQTGDAFLIVF--SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118
Query: 166 QDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205
D+ +S EE G L + K I T A + +
Sbjct: 119 SDLARSREVSLEE-GRHL------AGTLSCKHIETSAALHHN 153
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 26.5 bits (59), Expect = 5.5
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT-EGFNI-TILQKGEYT----LNIFELG 107
+++++G GKSTL + + S+ + + E T++ GE L+++E
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 108 GQENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165
G+ + + D L+V+ D + A+ L ++ +PI+++ NK
Sbjct: 68 GENEWLH--DHCMQVGDAYLIVY--SITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 166 QD 167
D
Sbjct: 124 SD 125
>1y0u_A Arsenical resistance operon repressor, putative; structural
genomics, protein structure initiative, PSI; HET: MSE;
1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Length = 96
Score = 25.5 bits (55), Expect = 6.2
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 22 YATYQYWKKRRQSTPEDEGFEEVSK-VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLS 80
+ + + W K DE + + V + +RKIL + + +++ +S L
Sbjct: 2 HMSLEEWIKADSLEKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQLD 61
Query: 81 HNLKPTEGFNITILQKGEYTL 101
++LK E + +
Sbjct: 62 YHLKVLEAGFCIERVGERWVV 82
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 26.9 bits (60), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 63 SGKSTLIKQISSGNTSLSHNLKPTEG---FNITILQKGEY 99
GK+T +K L+ +PTEG +++T+ K +Y
Sbjct: 393 IGKTTFVK-------MLAGVEEPTEGKVEWDLTVAYKPQY 425
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 6.6
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 39 EGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQI 72
G + + +I+++G +GKS I
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSI 42
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 26.1 bits (58), Expect = 7.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
TD+++ VV +AD +P + + + + VPI+V NK D P A
Sbjct: 79 TDIVILVV-AADDGVMP----QTVEAINHAKAANVPIIVAINKMDKPEA 122
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 26.1 bits (58), Expect = 7.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 55 ILILGLDNSGKSTLIKQI 72
I I G+D +GK TL++++
Sbjct: 3 IAIEGVDGAGKRTLVEKL 20
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.7 bits (58), Expect = 8.0
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 55 ILILGLDNSGKSTLIK 70
+L+ G ++GK++ I+
Sbjct: 68 VLVAGQYSTGKTSFIQ 83
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 8.9
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 93 ILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQ 152
+LQKG ++ L E Y + ++FV+ ++ P L E + L
Sbjct: 171 LLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLG----ERRYLENYI 226
Query: 153 RLSTVPILVIANKQD 167
+ + + + N D
Sbjct: 227 KGRGLTVFFLVNAWD 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.361
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,240,124
Number of extensions: 185622
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 177
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)