BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12174
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NO8|A Chain A, Crystal Structure Of The Phr Domain From Human Btbd2
           Protein
 pdb|3NO8|B Chain B, Crystal Structure Of The Phr Domain From Human Btbd2
           Protein
          Length = 176

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 123 KPQVCHRFQSCAYR-----SNQWRYRGRCDSIQFSVDRRVFMVGFGLYGSSNGAADYNVK 177
           +P+ C R + C+        ++W Y G  D I+FSV++R+F+VGFGLYGS +G  DY V 
Sbjct: 5   RPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVN 64

Query: 178 I 178
           I
Sbjct: 65  I 65


>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
          Phosphate Bound In The Active Site.
 pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
          Phosphate Bound In The Active Site
          Length = 879

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 9  KSEGFVDIDMSTLESVFARETLNCKEMHLFEAA 41
          K+E F D  +  +E+  AR   NC +M  +EAA
Sbjct: 40 KAEDFQDRFIDHVETTLARSLYNCDDMVAYEAA 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,525,898
Number of Sequences: 62578
Number of extensions: 202980
Number of successful extensions: 421
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 3
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)