Query psy12174
Match_columns 195
No_of_seqs 187 out of 1019
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:35:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2075|consensus 99.9 1.3E-25 2.8E-30 197.0 9.9 182 2-184 248-433 (521)
2 KOG4441|consensus 99.9 1E-23 2.2E-28 194.0 14.5 172 2-191 164-363 (571)
3 PHA02713 hypothetical protein; 99.8 1.9E-19 4.2E-24 165.5 11.3 142 2-164 153-312 (557)
4 PHA03098 kelch-like protein; P 99.7 1.2E-17 2.6E-22 152.2 11.8 91 2-101 135-232 (534)
5 PF07707 BACK: BTB And C-termi 99.7 1.1E-17 2.3E-22 120.4 -0.4 77 2-87 26-103 (103)
6 smart00875 BACK BTB And C-term 99.6 2.4E-15 5.3E-20 107.1 7.0 73 2-84 26-99 (101)
7 PHA02790 Kelch-like protein; P 99.4 1.4E-12 3E-17 118.2 11.5 70 2-84 150-223 (480)
8 KOG4350|consensus 99.0 4E-10 8.7E-15 98.5 6.1 88 2-101 175-262 (620)
9 PF08005 PHR: PHR domain ; In 98.1 6.9E-06 1.5E-10 63.8 5.5 53 129-186 2-55 (152)
10 KOG4441|consensus 95.8 0.0088 1.9E-07 55.8 3.6 32 135-167 451-487 (571)
11 PF01344 Kelch_1: Kelch motif; 95.3 0.087 1.9E-06 31.8 5.7 31 149-184 6-36 (47)
12 PHA02713 hypothetical protein; 94.1 0.068 1.5E-06 49.7 4.6 51 135-190 439-494 (557)
13 PF13964 Kelch_6: Kelch motif 92.6 0.26 5.6E-06 30.3 4.1 29 151-184 8-36 (50)
14 PF07646 Kelch_2: Kelch motif; 92.0 0.44 9.6E-06 29.2 4.6 34 149-185 6-39 (49)
15 PHA02790 Kelch-like protein; P 88.7 0.66 1.4E-05 42.3 4.6 30 135-165 422-456 (480)
16 TIGR03547 muta_rot_YjhT mutatr 84.2 1 2.3E-05 38.7 3.3 35 126-164 169-209 (346)
17 KOG1428|consensus 83.0 0.76 1.7E-05 47.3 2.1 55 127-187 1055-1110(3738)
18 TIGR03547 muta_rot_YjhT mutatr 81.1 2.1 4.6E-05 36.8 4.0 29 135-164 297-330 (346)
19 TIGR03548 mutarot_permut cycli 80.7 1.7 3.7E-05 37.1 3.3 32 127-161 273-310 (323)
20 PF13854 Kelch_5: Kelch motif 80.5 5.3 0.00012 23.5 4.5 17 149-166 9-25 (42)
21 PHA03098 kelch-like protein; P 79.9 2.6 5.7E-05 38.5 4.4 29 135-164 365-398 (534)
22 PLN02153 epithiospecifier prot 79.5 3.5 7.5E-05 35.5 4.8 28 135-162 224-259 (341)
23 TIGR03548 mutarot_permut cycli 79.4 2.4 5.2E-05 36.2 3.7 31 135-166 146-182 (323)
24 PRK14131 N-acetylneuraminic ac 79.4 3.2 6.9E-05 36.4 4.6 33 127-162 191-229 (376)
25 PLN02153 epithiospecifier prot 75.5 6.3 0.00014 33.9 5.3 29 135-164 108-146 (341)
26 PRK14131 N-acetylneuraminic ac 74.1 4.3 9.2E-05 35.6 3.9 29 135-164 319-352 (376)
27 PF00415 RCC1: Regulator of ch 59.5 20 0.00043 21.5 3.8 20 154-173 1-21 (51)
28 PLN02193 nitrile-specifier pro 59.3 19 0.00042 32.6 5.2 29 135-164 350-386 (470)
29 PF08155 NOGCT: NOGCT (NUC087) 58.5 3.2 7E-05 26.6 -0.0 27 168-194 12-38 (55)
30 PLN02193 nitrile-specifier pro 58.4 13 0.00028 33.8 3.8 31 135-166 251-289 (470)
31 PF13418 Kelch_4: Galactose ox 58.1 22 0.00048 21.1 3.8 13 152-165 9-22 (49)
32 KOG4693|consensus 53.3 16 0.00035 31.4 3.4 41 135-175 275-325 (392)
33 KOG0379|consensus 47.6 34 0.00074 31.3 4.8 30 135-165 146-183 (482)
34 PF13415 Kelch_3: Galactose ox 46.2 17 0.00037 21.8 1.9 11 154-165 1-11 (49)
35 smart00612 Kelch Kelch domain. 45.8 31 0.00067 19.6 3.0 9 156-165 1-9 (47)
36 KOG4682|consensus 37.2 17 0.00036 32.8 1.1 44 3-46 201-246 (488)
37 PF08766 DEK_C: DEK C terminal 33.1 99 0.0021 19.2 4.0 42 19-69 7-49 (54)
38 PF07904 Eaf7: Chromatin modif 29.5 59 0.0013 22.9 2.7 33 33-75 2-34 (91)
39 PF15493 YrpD: Domain of unkno 27.5 72 0.0016 25.9 3.1 34 153-191 36-69 (208)
40 KOG4693|consensus 27.2 55 0.0012 28.3 2.5 33 128-164 108-148 (392)
41 PF14726 RTTN_N: Rotatin, an a 26.2 69 0.0015 22.9 2.6 25 23-48 18-42 (98)
42 KOG0379|consensus 23.0 1.1E+02 0.0023 28.1 3.8 30 135-164 197-234 (482)
43 COG4746 Uncharacterized protei 20.8 1.8E+02 0.0039 20.0 3.5 66 18-87 9-75 (80)
No 1
>KOG2075|consensus
Probab=99.92 E-value=1.3e-25 Score=197.02 Aligned_cols=182 Identities=51% Similarity=0.817 Sum_probs=165.4
Q ss_pred cchHHhhCCCCcccCC--HHHHhhcccCCCCCCCHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCH
Q psy12174 2 SQAEMALKSEGFVDID--MSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSL 79 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls--~~~L~~lL~~d~L~v~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~ 79 (195)
.+|.+.+..|.|.+.. .++++++|+++.|.++|..+|+|+++|+..+|.|.+.+.+..++++.++..+..||||+|..
T Consensus 248 ~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~ 327 (521)
T KOG2075|consen 248 KSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNI 327 (521)
T ss_pred hHHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccch
Confidence 4688889999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccc--cccccceecCCceeeecccceeEEeeCCEE
Q psy12174 80 GEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQVC--HRFQSCAYRSNQWRYRGRCDSIQFSVDRRV 157 (195)
Q Consensus 80 ~~L~~~v~~~~ll~~~e~~~l~~~~~~~~~~~~~~~~~pR~~~~~~~~--~~~~~~e~~~~~W~~~~~~~r~~~~v~~~v 157 (195)
++++..+++.+++.+.+..+++.|+...++|...+..+||++.+.+.| .+|++++.+. +|++.+..|++.|.+|.++
T Consensus 328 Eefa~~~e~sgIl~d~e~~~~F~~~t~~P~P~l~f~~~~ra~ls~~~~~~~rfqr~~~R~-q~~~~g~~D~i~F~vd~ri 406 (521)
T KOG2075|consen 328 EEFARGVEQSGILTDREPLKLFLYFTAAPKPALDFVSRPRAGLSHKKLVRARFQRSETRQ-QWRYRGTSDRITFQVDRRI 406 (521)
T ss_pred hhhccCccccCCccccchHhhhhhhccCCCccccccCcccccccccccchhhhhcchhhh-hhccccccccceeeeeeeE
Confidence 999999999999988887888888877667767788899988765554 5676666444 7999999999999999999
Q ss_pred EEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 158 FMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 158 YvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
+++|+|+||+++|+++|+++|.++|+.
T Consensus 407 ~IagfGlygs~~g~~ey~~~i~l~~~~ 433 (521)
T KOG2075|consen 407 FIAGFGLYGSSTGPTEYQTKILLIHIQ 433 (521)
T ss_pred EEEeccccccccccchheeEEEEEecc
Confidence 999999999999999999999999987
No 2
>KOG4441|consensus
Probab=99.91 E-value=1e-23 Score=193.95 Aligned_cols=172 Identities=16% Similarity=0.298 Sum_probs=134.8
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+|.+++||++||.++|..||++|.|+| +|++||+|+++|++| |++.|+.+++++|++||||+|++.
T Consensus 164 ~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~---------d~~~R~~~~~~ll~~vr~~ll~~~ 234 (571)
T KOG4441|consen 164 QHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKH---------DFEEREEHLPALLEAVRLPLLPPQ 234 (571)
T ss_pred HHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhc---------CHhhHHHHHHHHHHhcCccCCCHH
Confidence 6999999999999999999999999999999 999999999999965 667899999999999999999999
Q ss_pred HHHHhhhhcCCCCch-HHHHHHH---HhhcCC--CCCC-CCCCCCCCCCC----------C-----ccccccccceecCC
Q psy12174 81 EFANKAAQLGILTLQ-ETIDIFL---HFTAHN--KPHL-SYPVKARAGLK----------P-----QVCHRFQSCAYRSN 138 (195)
Q Consensus 81 ~L~~~v~~~~ll~~~-e~~~l~~---~~~~~~--~~~~-~~~~~pR~~~~----------~-----~~~~~~~~~e~~~~ 138 (195)
+|.+.|...++++.+ +|++++. .+++.+ ++.+ ..+++||.+.. . ..+++|+ +.++
T Consensus 235 ~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd---~~~~ 311 (571)
T KOG4441|consen 235 FLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD---PKTN 311 (571)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec---CCcC
Confidence 999999999988764 7988873 344333 3334 77888995211 0 1123444 7889
Q ss_pred ceeeecc--cceeE---EeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecCCCCCcc
Q psy12174 139 QWRYRGR--CDSIQ---FSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMPDDWKL 191 (195)
Q Consensus 139 ~W~~~~~--~~r~~---~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
.|..++. .+|.+ .+++|+|||+| |.++ ...+--+++.++...+. |..
T Consensus 312 ~w~~~a~m~~~r~~~~~~~~~~~lYv~G-G~~~----~~~~l~~ve~YD~~~~~-W~~ 363 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRVGVAVLNGKLYVVG-GYDS----GSDRLSSVERYDPRTNQ-WTP 363 (571)
T ss_pred cEeecCCCCcccccccEEEECCEEEEEc-cccC----CCcccceEEEecCCCCc-eec
Confidence 9999973 23443 37899999999 7763 14455667777766665 653
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=165.48 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=105.6
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCC-CCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARET-LNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSL 79 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~-L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~ 79 (195)
+||.+|++++||++|+.++|.+||++|+ |+| +|++||+||++|++| |+++|++ +.+||++||||+|++
T Consensus 153 ~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~---------d~~~r~~-~~~ll~~VR~~~l~~ 222 (557)
T PHA02713 153 SNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY---------NYITEEQ-LLCILSCIDIQNLDK 222 (557)
T ss_pred HHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc---------CHHHHHH-HhhhHhhhhHhhcch
Confidence 7999999999999999999999999988 799 999999999999975 5555555 669999999999999
Q ss_pred HHHHHhhhhcCCCCc-hHHHHHHHHhhcCCCCCCCCCCCCCCCC----------CCccccccccceecCCceeeecc-c-
Q psy12174 80 GEFANKAAQLGILTL-QETIDIFLHFTAHNKPHLSYPVKARAGL----------KPQVCHRFQSCAYRSNQWRYRGR-C- 146 (195)
Q Consensus 80 ~~L~~~v~~~~ll~~-~e~~~l~~~~~~~~~~~~~~~~~pR~~~----------~~~~~~~~~~~e~~~~~W~~~~~-~- 146 (195)
.++. .+..+++++. .+|.+++...... ..++||... ....+.+|+ +.+++|..++. +
T Consensus 223 ~~~~-~~~~~~~i~~~~~c~~~l~~a~~~------~~~~~r~~~l~~~~g~~~~~~~~v~~yd---~~~~~W~~l~~mp~ 292 (557)
T PHA02713 223 KSRL-LLYSNKTINMYPSCIQFLLDNKQN------RNIIPRQLCLVCHDTKYNVCNPCILVYN---INTMEYSVISTIPN 292 (557)
T ss_pred hhhh-hhcchHHHHhhHHHHHHHhhhhhh------cccCCcceEEEEecCccccCCCCEEEEe---CCCCeEEECCCCCc
Confidence 9987 5666777765 4698887432110 112334210 001234566 77899998873 2
Q ss_pred ce---eEEeeCCEEEEEEeec
Q psy12174 147 DS---IQFSVDRRVFMVGFGL 164 (195)
Q Consensus 147 ~r---~~~~v~~~vYvvG~g~ 164 (195)
++ +.++++|+|||+| |.
T Consensus 293 ~r~~~~~a~l~~~IYviG-G~ 312 (557)
T PHA02713 293 HIINYASAIVDNEIIIAG-GY 312 (557)
T ss_pred cccceEEEEECCEEEEEc-CC
Confidence 33 3347899999999 64
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=152.24 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=80.5
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+|+++++|++|+.++|..+|++|+|++ +|++||+||++|++| |+++|.+++++||++||||+|+++
T Consensus 135 ~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~---------~~~~r~~~~~~ll~~vR~~~~~~~ 205 (534)
T PHA03098 135 NNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTS---------KKNNKYKDICLILKVLRITFLSEE 205 (534)
T ss_pred HHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhc---------ChhhhHhHHHHHHhhccccccCHH
Confidence 6999999999999999999999999999999 999999999999965 667899999999999999999999
Q ss_pred HHHHhhh------hcCCCCchHHHHHH
Q psy12174 81 EFANKAA------QLGILTLQETIDIF 101 (195)
Q Consensus 81 ~L~~~v~------~~~ll~~~e~~~l~ 101 (195)
+|.+.+. ...++.+.+|..++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (534)
T PHA03098 206 GIKKLKRWKLRIKKKKIVFNKRCIKII 232 (534)
T ss_pred HHHHHHHHHhhcCCcceeccccchHHH
Confidence 9988664 44555445677765
No 5
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.65 E-value=1.1e-17 Score=120.45 Aligned_cols=77 Identities=26% Similarity=0.437 Sum_probs=68.1
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+|+++++|++||.+++..+|++|+|++ +|.+||+|+++|+++ ++++|.+++.+||++||||+|+++
T Consensus 26 ~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~---------~~~~r~~~~~~Ll~~iR~~~l~~~ 96 (103)
T PF07707_consen 26 KNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKH---------NPENREEHLKELLSCIRFPLLSPE 96 (103)
T ss_dssp HTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHC---------THHHHTTTHHHHHCCCHHHCT-HH
T ss_pred HHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHh---------CHHHHHHHHHHHHHhCCcccCCHH
Confidence 6999999999999999999999999999999 999999999999975 566799999999999999999999
Q ss_pred HHHHhhh
Q psy12174 81 EFANKAA 87 (195)
Q Consensus 81 ~L~~~v~ 87 (195)
+|.+.|+
T Consensus 97 ~L~~~v~ 103 (103)
T PF07707_consen 97 ELQNVVE 103 (103)
T ss_dssp HHHHCCT
T ss_pred HHHHHHC
Confidence 9998663
No 6
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.60 E-value=2.4e-15 Score=107.11 Aligned_cols=73 Identities=27% Similarity=0.452 Sum_probs=66.1
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+++++++|++||.+++..+|++|+|++ +|.++|+|+.+|++++ ...|. ++..++++||||+|+++
T Consensus 26 ~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~---------~~~~~-~~~~ll~~ir~~~~~~~ 95 (101)
T smart00875 26 KNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD---------PERRR-HLPELLSHVRFPLLSPE 95 (101)
T ss_pred HHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC---------HHHHH-HHHHHHHhCCCCCCCHH
Confidence 6899999999999999999999999999998 9999999999999763 33444 88999999999999999
Q ss_pred HHHH
Q psy12174 81 EFAN 84 (195)
Q Consensus 81 ~L~~ 84 (195)
+|..
T Consensus 96 ~l~~ 99 (101)
T smart00875 96 YLLE 99 (101)
T ss_pred HHHh
Confidence 8865
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=118.20 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=58.4
Q ss_pred cchHHhhCC--CCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhc-cCCCCC
Q psy12174 2 SQAEMALKS--EGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYL-VRIPTM 77 (195)
Q Consensus 2 ~nf~eV~~s--eeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~-VRfplm 77 (195)
+||.+|+++ +||++||. .+||++|+|+| +|++||+||++|++|+ ..|.+.+.+++++ ||+++|
T Consensus 150 ~nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----------~~~~~~l~~~vr~~ir~~~l 216 (480)
T PHA02790 150 KHFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----------RNRLGNLLLLIKNVIRSNYL 216 (480)
T ss_pred HhHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----------HHHHHHHHHHHHhcCChhhC
Confidence 799999987 89999996 67999999999 9999999999999752 2455555666666 899999
Q ss_pred CHHHHHH
Q psy12174 78 SLGEFAN 84 (195)
Q Consensus 78 ~~~~L~~ 84 (195)
++.++.+
T Consensus 217 ~~~~l~~ 223 (480)
T PHA02790 217 SPRGINN 223 (480)
T ss_pred CHHHHHH
Confidence 9888754
No 8
>KOG4350|consensus
Probab=99.02 E-value=4e-10 Score=98.52 Aligned_cols=88 Identities=25% Similarity=0.439 Sum_probs=78.9
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCCCHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGE 81 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~~ 81 (195)
+|..+++.++.|..||.+.|.++|.+|.+-..|.++|.||.+|-+++ -+.....+++.||+|||+..+
T Consensus 175 rnA~~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~N------------ske~~k~~~~~VRLPLm~lte 242 (620)
T KOG4350|consen 175 RNADQLLEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNN------------SKEASKVLLELVRLPLMTLTE 242 (620)
T ss_pred cCHHhhhcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcC------------chhhHHHHHHHHhhhhccHHH
Confidence 58889999999999999999999999999999999999999998653 234456799999999999999
Q ss_pred HHHhhhhcCCCCchHHHHHH
Q psy12174 82 FANKAAQLGILTLQETIDIF 101 (195)
Q Consensus 82 L~~~v~~~~ll~~~e~~~l~ 101 (195)
|.+.|.+++++..+.+.+.+
T Consensus 243 LLnvVRPsGllspD~iLDAI 262 (620)
T KOG4350|consen 243 LLNVVRPSGLLSPDTILDAI 262 (620)
T ss_pred HHhccCcccCcCHHHHHHHH
Confidence 99999999999988777766
No 9
>PF08005 PHR: PHR domain ; InterPro: IPR012983 This domain is called PHR as it was original found in the proteins PAM (O75592 from SWISSPROT), highwire (Q9NB71 from SWISSPROT) and RPM (Q17551 from SWISSPROT). This domain can be duplicated in the highwire, PAM and PRM sequences. The function of PHR is currently unclear.; PDB: 3NO8_A 3GBW_A 3HWJ_A.
Probab=98.07 E-value=6.9e-06 Score=63.84 Aligned_cols=53 Identities=49% Similarity=0.855 Sum_probs=40.7
Q ss_pred ccccceecCCceeeecc-cceeEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecCC
Q psy12174 129 RFQSCAYRSNQWRYRGR-CDSIQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMP 186 (195)
Q Consensus 129 ~~~~~e~~~~~W~~~~~-~~r~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~ 186 (195)
||++.. .++|.+.+. ++++.|.||..||++|+|+||+. .+|+++|++....+.
T Consensus 2 RF~~~~--~~~W~y~~~~~DaI~F~VDr~I~l~G~GlyG~~---~~y~~~iel~~~~~~ 55 (152)
T PF08005_consen 2 RFQSTS--GSGWGYSGGSPDAIRFSVDRDIFLVGFGLYGGS---GEYTVEIELLDDGGS 55 (152)
T ss_dssp SECEE---CSEB--CCC--EEEEEEESSSEEEEEEEEE-BS---SEEEEEEEEEEEETT
T ss_pred cccccc--CCCcCcCCCCCcEEEEEeCCCEEEEEEEeeccc---cccEEEEEEEeccCC
Confidence 565431 489999986 79999999999999999999987 799999999965554
No 10
>KOG4441|consensus
Probab=95.78 E-value=0.0088 Score=55.78 Aligned_cols=32 Identities=22% Similarity=0.564 Sum_probs=25.6
Q ss_pred ecCCceeeecc-c-ceeEE---eeCCEEEEEEeeccCC
Q psy12174 135 YRSNQWRYRGR-C-DSIQF---SVDRRVFMVGFGLYGS 167 (195)
Q Consensus 135 ~~~~~W~~~~~-~-~r~~~---~v~~~vYvvG~g~~g~ 167 (195)
|.+|+|...+. . +|..+ ++++.||++| |++|.
T Consensus 451 P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvG-G~~~~ 487 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVG-GFDGT 487 (571)
T ss_pred CCCCceeecCCcccccccceEEEECCEEEEEC-CccCC
Confidence 89999999983 2 44443 7899999999 88883
No 11
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.26 E-value=0.087 Score=31.76 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=23.5
Q ss_pred eEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 149 IQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 149 ~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
..+++++.||++| |..+ ...+.-+++.++..
T Consensus 6 ~~~~~~~~iyv~G-G~~~----~~~~~~~v~~yd~~ 36 (47)
T PF01344_consen 6 AAVVVGNKIYVIG-GYDG----NNQPTNSVEVYDPE 36 (47)
T ss_dssp EEEEETTEEEEEE-EBES----TSSBEEEEEEEETT
T ss_pred EEEEECCEEEEEe-eecc----cCceeeeEEEEeCC
Confidence 3347899999999 7765 25677788887766
No 12
>PHA02713 hypothetical protein; Provisional
Probab=94.14 E-value=0.068 Score=49.69 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=32.3
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecCCCCCc
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMPDDWK 190 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
|.+|+|...+. .+|.. ++++|+|||+| |..|.. .+...++.++...++-|.
T Consensus 439 P~td~W~~v~~m~~~r~~~~~~~~~~~IYv~G-G~~~~~----~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 439 TVNNIWETLPNFWTGTIRPGVVSHKDDIYVVC-DIKDEK----NVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred CCCCeEeecCCCCcccccCcEEEECCEEEEEe-CCCCCC----ccceeEEEecCCCCCCee
Confidence 88999998873 23333 37899999999 654322 223345666665544564
No 13
>PF13964 Kelch_6: Kelch motif
Probab=92.58 E-value=0.26 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=18.7
Q ss_pred EeeCCEEEEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 151 FSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 151 ~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
++++++||++| |..+. ..+.-.++.++..
T Consensus 8 v~~~~~iyv~G-G~~~~----~~~~~~v~~yd~~ 36 (50)
T PF13964_consen 8 VVVGGKIYVFG-GYDNS----GKYSNDVERYDPE 36 (50)
T ss_pred EEECCEEEEEC-CCCCC----CCccccEEEEcCC
Confidence 47899999999 65443 3344455555544
No 14
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.98 E-value=0.44 Score=29.17 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=21.7
Q ss_pred eEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecC
Q psy12174 149 IQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTM 185 (195)
Q Consensus 149 ~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~ 185 (195)
..++++++||++| |.+ ......+.-.+.+.+...
T Consensus 6 s~~~~~~kiyv~G-G~~--~~~~~~~~~~v~~~d~~t 39 (49)
T PF07646_consen 6 SAVVLDGKIYVFG-GYG--TDNGGSSSNDVWVFDTET 39 (49)
T ss_pred EEEEECCEEEEEC-Ccc--cCCCCcccceeEEEECCC
Confidence 3347899999999 661 222355666676666543
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=88.73 E-value=0.66 Score=42.26 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=19.5
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~ 165 (195)
|.+|+|..++. .+|.. ++++|+||++| |..
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviG-G~~ 456 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIG-GFY 456 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEEC-CcC
Confidence 67788887762 13332 26788888888 543
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.18 E-value=1 Score=38.71 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=24.8
Q ss_pred cccccccceecCCceeeecc-c--ceeE---EeeCCEEEEEEeec
Q psy12174 126 VCHRFQSCAYRSNQWRYRGR-C--DSIQ---FSVDRRVFMVGFGL 164 (195)
Q Consensus 126 ~~~~~~~~e~~~~~W~~~~~-~--~r~~---~~v~~~vYvvG~g~ 164 (195)
.+++|+ +.+++|...+. + +|.. ++++++||++| |.
T Consensus 169 ~v~~YD---p~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G-G~ 209 (346)
T TIGR03547 169 NVLSYD---PSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN-GE 209 (346)
T ss_pred eEEEEE---CCCCceeECccCCCCcCCCceEEEECCEEEEEe-ee
Confidence 356676 78899998863 2 2333 26799999999 54
No 17
>KOG1428|consensus
Probab=83.01 E-value=0.76 Score=47.25 Aligned_cols=55 Identities=29% Similarity=0.603 Sum_probs=45.0
Q ss_pred ccccccceecCCceeeeccc-ceeEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecCCC
Q psy12174 127 CHRFQSCAYRSNQWRYRGRC-DSIQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMPD 187 (195)
Q Consensus 127 ~~~~~~~e~~~~~W~~~~~~-~r~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~~ 187 (195)
+.+|+ -..+.|.+.+.. ..++|.++..|.++|.|+||.. .+|.-+|.++...++.
T Consensus 1055 aNRFd---~~GGGWGYSA~SVEAIrFsvskeI~L~GvGLyGGR---GEY~sKlKLy~~~~~~ 1110 (3738)
T KOG1428|consen 1055 ANRFD---GTGGGWGYSAHSVEAIRFSVSKEIRLVGVGLYGGR---GEYISKLKLYRQIGTE 1110 (3738)
T ss_pred eeecc---cCCCCccccccchhheeeecccceEEEeeeeccCc---chhhhhhhhhhhcCCc
Confidence 46777 456899999854 7889999999999999999765 5899999998776653
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=81.14 E-value=2.1 Score=36.78 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=20.8
Q ss_pred ecCCceeeecc-c-ceeEE---eeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRGR-C-DSIQF---SVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~~-~-~r~~~---~v~~~vYvvG~g~ 164 (195)
+.+++|..++. + +|..+ +++|+|||+| |.
T Consensus 297 ~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~G-G~ 330 (346)
T TIGR03547 297 LDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIG-GE 330 (346)
T ss_pred ecCCcccccCCCCCCceeeEEEEcCCEEEEEe-cc
Confidence 67899998763 2 33332 5799999999 54
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.69 E-value=1.7 Score=37.08 Aligned_cols=32 Identities=13% Similarity=0.379 Sum_probs=22.9
Q ss_pred ccccccceecCCceeeecc---cceeE---EeeCCEEEEEE
Q psy12174 127 CHRFQSCAYRSNQWRYRGR---CDSIQ---FSVDRRVFMVG 161 (195)
Q Consensus 127 ~~~~~~~e~~~~~W~~~~~---~~r~~---~~v~~~vYvvG 161 (195)
+.+|+ +.+++|...+. .+|.. +.+++.||++|
T Consensus 273 v~~yd---~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G 310 (323)
T TIGR03548 273 ILIYN---VRTGKWKSIGNSPFFARCGAALLLTGNNIFSIN 310 (323)
T ss_pred EEEEE---CCCCeeeEcccccccccCchheEEECCEEEEEe
Confidence 44555 77899998762 23433 37899999999
No 20
>PF13854 Kelch_5: Kelch motif
Probab=80.45 E-value=5.3 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.1
Q ss_pred eEEeeCCEEEEEEeeccC
Q psy12174 149 IQFSVDRRVFMVGFGLYG 166 (195)
Q Consensus 149 ~~~~v~~~vYvvG~g~~g 166 (195)
+.+++++.||+.| |..+
T Consensus 9 s~~~~~~~iyi~G-G~~~ 25 (42)
T PF13854_consen 9 SAVVVGNNIYIFG-GYSG 25 (42)
T ss_pred EEEEECCEEEEEc-CccC
Confidence 3347899999999 7654
No 21
>PHA03098 kelch-like protein; Provisional
Probab=79.86 E-value=2.6 Score=38.52 Aligned_cols=29 Identities=17% Similarity=0.512 Sum_probs=21.3
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~ 164 (195)
+.+++|...+. .+|.. ++++|.||++| |.
T Consensus 365 ~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~G-G~ 398 (534)
T PHA03098 365 PGESKWREEPPLIFPRYNPCVVNVNNLIYVIG-GI 398 (534)
T ss_pred CCCCceeeCCCcCcCCccceEEEECCEEEEEC-Cc
Confidence 77899998863 23333 36799999999 54
No 22
>PLN02153 epithiospecifier protein
Probab=79.49 E-value=3.5 Score=35.51 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=20.3
Q ss_pred ecCCceeeecc----c-ceeE---EeeCCEEEEEEe
Q psy12174 135 YRSNQWRYRGR----C-DSIQ---FSVDRRVFMVGF 162 (195)
Q Consensus 135 ~~~~~W~~~~~----~-~r~~---~~v~~~vYvvG~ 162 (195)
+.+++|..++. + +|.. ++++++||++||
T Consensus 224 ~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 224 PASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred cCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 67899998752 1 3433 378999999993
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.39 E-value=2.4 Score=36.17 Aligned_cols=31 Identities=13% Similarity=0.322 Sum_probs=22.1
Q ss_pred ecCCceeeecc-c--ceeE---EeeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR-C--DSIQ---FSVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~-~--~r~~---~~v~~~vYvvG~g~~g 166 (195)
+.+++|..++. . .|.. ++++++|||+| |..+
T Consensus 146 ~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~G-G~~~ 182 (323)
T TIGR03548 146 LETQEWFELPDFPGEPRVQPVCVKLQNELYVFG-GGSN 182 (323)
T ss_pred CCCCCeeECCCCCCCCCCcceEEEECCEEEEEc-CCCC
Confidence 77899998862 2 3433 26799999999 6543
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=79.38 E-value=3.2 Score=36.40 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=23.4
Q ss_pred ccccccceecCCceeeecc-c--ceeE---EeeCCEEEEEEe
Q psy12174 127 CHRFQSCAYRSNQWRYRGR-C--DSIQ---FSVDRRVFMVGF 162 (195)
Q Consensus 127 ~~~~~~~e~~~~~W~~~~~-~--~r~~---~~v~~~vYvvG~ 162 (195)
+.+|+ +.+|+|...+. + ++.. +.++++||++||
T Consensus 191 v~~YD---~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 191 VLSYD---PSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred EEEEE---CCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence 45676 78899998762 2 2333 256999999994
No 25
>PLN02153 epithiospecifier protein
Probab=75.54 E-value=6.3 Score=33.91 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=20.8
Q ss_pred ecCCceeeecc------c-ceeEE---eeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRGR------C-DSIQF---SVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~~------~-~r~~~---~v~~~vYvvG~g~ 164 (195)
+.+++|..++. + +|..+ +.+++|||+| |.
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G-G~ 146 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG-GV 146 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC-Cc
Confidence 67899997652 2 34433 6799999999 64
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=74.07 E-value=4.3 Score=35.61 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred ecCCceeeecc-c-ceeE---EeeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRGR-C-DSIQ---FSVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~~-~-~r~~---~~v~~~vYvvG~g~ 164 (195)
+.+++|...+. + +|.. .++++.||++| |.
T Consensus 319 ~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~G-G~ 352 (376)
T PRK14131 319 LVNGKWQKVGELPQGLAYGVSVSWNNGVLLIG-GE 352 (376)
T ss_pred ecCCcccccCcCCCCccceEEEEeCCEEEEEc-CC
Confidence 77899997763 2 3333 26799999999 54
No 27
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=59.49 E-value=20 Score=21.46 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=16.1
Q ss_pred CCEEEEEEeeccCCCC-CCcc
Q psy12174 154 DRRVFMVGFGLYGSSN-GAAD 173 (195)
Q Consensus 154 ~~~vYvvG~g~~g~~~-~~~~ 173 (195)
||.||+-|.+.+|..+ +...
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~ 21 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDN 21 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSS
T ss_pred CCcEEEEECCCCCCCCCCCCC
Confidence 6899999988999888 4444
No 28
>PLN02193 nitrile-specifier protein
Probab=59.32 E-value=19 Score=32.63 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=20.9
Q ss_pred ecCCceeeecc-----cceeE---EeeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRGR-----CDSIQ---FSVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~~-----~~r~~---~~v~~~vYvvG~g~ 164 (195)
+.+++|...+. .+|.. ++++++||++| |.
T Consensus 350 ~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~G-G~ 386 (470)
T PLN02193 350 PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFG-GE 386 (470)
T ss_pred CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEEC-Cc
Confidence 67899997742 23433 37899999999 54
No 29
>PF08155 NOGCT: NOGCT (NUC087) domain; InterPro: IPR012973 This C-terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [].
Probab=58.52 E-value=3.2 Score=26.60 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCCCcceEEEEEEeeecCCCCCccccc
Q psy12174 168 SNGAADYNVKIVPRHWTMPDDWKLNVI 194 (195)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (195)
.||+.+|++++.=...-.+++||-.+|
T Consensus 12 ~Gg~gvy~~dlkk~y~L~~~ewk~D~I 38 (55)
T PF08155_consen 12 NGGAGVYSVDLKKHYDLKNDEWKYDII 38 (55)
T ss_pred hCCCCccccchhhccccCChhHhcccc
Confidence 467889999997666667999998776
No 30
>PLN02193 nitrile-specifier protein
Probab=58.37 E-value=13 Score=33.82 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=22.0
Q ss_pred ecCCceeeecc-----cceeEE---eeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR-----CDSIQF---SVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~-----~~r~~~---~v~~~vYvvG~g~~g 166 (195)
+.+++|..++. .+|..+ .++++||++| |..+
T Consensus 251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~G-G~~~ 289 (470)
T PLN02193 251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFG-GVSA 289 (470)
T ss_pred CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEEC-CCCC
Confidence 67899997752 234443 5799999999 6543
No 31
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=58.13 E-value=22 Score=21.10 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.4
Q ss_pred ee-CCEEEEEEeecc
Q psy12174 152 SV-DRRVFMVGFGLY 165 (195)
Q Consensus 152 ~v-~~~vYvvG~g~~ 165 (195)
.+ ++.||++| |..
T Consensus 9 ~~~~~~i~v~G-G~~ 22 (49)
T PF13418_consen 9 SIGDNSIYVFG-GRD 22 (49)
T ss_dssp EE-TTEEEEE---EE
T ss_pred EEeCCeEEEEC-CCC
Confidence 45 69999999 654
No 32
>KOG4693|consensus
Probab=53.30 E-value=16 Score=31.38 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=26.4
Q ss_pred ecCCceeeec------ccceeE--EeeCCEEEEEEee--ccCCCCCCcceE
Q psy12174 135 YRSNQWRYRG------RCDSIQ--FSVDRRVFMVGFG--LYGSSNGAADYN 175 (195)
Q Consensus 135 ~~~~~W~~~~------~~~r~~--~~v~~~vYvvG~g--~~g~~~~~~~~~ 175 (195)
|++..|.-.. ..+|.+ +++++++|+.||- +-++.-.+++|+
T Consensus 275 P~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~ 325 (392)
T KOG4693|consen 275 PKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYN 325 (392)
T ss_pred cccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCCCCCCCccccC
Confidence 7888998653 123333 3789999999942 345555566665
No 33
>KOG0379|consensus
Probab=47.63 E-value=34 Score=31.30 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=21.7
Q ss_pred ecCCceeeecc-----cceeEE---eeCCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGR-----CDSIQF---SVDRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~-----~~r~~~---~v~~~vYvvG~g~~ 165 (195)
..+++|..... .+|..| +++++|||.| |..
T Consensus 146 ~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfG-G~~ 183 (482)
T KOG0379|consen 146 LSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFG-GIG 183 (482)
T ss_pred CCCCcEEEecCcCCCCCCcccceEEEECCEEEEEC-Ccc
Confidence 67899997741 235444 6799999999 653
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=46.16 E-value=17 Score=21.84 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=9.0
Q ss_pred CCEEEEEEeecc
Q psy12174 154 DRRVFMVGFGLY 165 (195)
Q Consensus 154 ~~~vYvvG~g~~ 165 (195)
|+.+|+.| |..
T Consensus 1 g~~~~vfG-G~~ 11 (49)
T PF13415_consen 1 GNKLYVFG-GYD 11 (49)
T ss_pred CCEEEEEC-CcC
Confidence 57899999 654
No 35
>smart00612 Kelch Kelch domain.
Probab=45.78 E-value=31 Score=19.60 Aligned_cols=9 Identities=33% Similarity=1.047 Sum_probs=6.8
Q ss_pred EEEEEEeecc
Q psy12174 156 RVFMVGFGLY 165 (195)
Q Consensus 156 ~vYvvG~g~~ 165 (195)
+||++| |..
T Consensus 1 ~iyv~G-G~~ 9 (47)
T smart00612 1 KIYVVG-GFD 9 (47)
T ss_pred CEEEEe-CCC
Confidence 489999 654
No 36
>KOG4682|consensus
Probab=37.24 E-value=17 Score=32.85 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=36.0
Q ss_pred chHHhhCCCCcccCCHHHHhhcccCCCCCC-C-HHHHHHHHHHHHH
Q psy12174 3 QAEMALKSEGFVDIDMSTLESVFARETLNC-K-EMHLFEAALNWAN 46 (195)
Q Consensus 3 nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~-E~~vf~Av~~Wv~ 46 (195)
||..+-...-+.+++.+.+..+|.|.+|.+ . |-.+|..+..|+-
T Consensus 201 nl~~i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 201 NLMTIQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred hhHhhhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 444444444566899999999999999999 5 9999999999975
No 37
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=33.14 E-value=99 Score=19.18 Aligned_cols=42 Identities=5% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhh
Q psy12174 19 STLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNAL 69 (195)
Q Consensus 19 ~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll 69 (195)
..+.++|+..+|.. +..+|-+++..... .|...|+.++..++
T Consensus 7 ~~i~~iL~~~dl~~vT~k~vr~~Le~~~~---------~dL~~~K~~I~~~I 49 (54)
T PF08766_consen 7 EAIREILREADLDTVTKKQVREQLEERFG---------VDLSSRKKFIKELI 49 (54)
T ss_dssp HHHHHHHTTS-GGG--HHHHHHHHHHH-S---------S--SHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHhhHHHHHHHHHHHHC---------CCcHHHHHHHHHHH
Confidence 45778888888887 88899888888863 45667877777654
No 38
>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S. cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex
Probab=29.50 E-value=59 Score=22.86 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCC
Q psy12174 33 KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIP 75 (195)
Q Consensus 33 ~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfp 75 (195)
.|..+|+|+.+| ++-..+|.-++..+..+++=+
T Consensus 2 ~Ei~Lf~a~~~~----------KPvGi~KHF~M~~I~~~l~~~ 34 (91)
T PF07904_consen 2 DEIRLFRAMCRY----------KPVGIHKHFHMICIVERLNNP 34 (91)
T ss_pred hHHHHHHHHHhc----------CCCccchHHHHHHHHHHHhcc
Confidence 588999999999 334456666666666655543
No 39
>PF15493 YrpD: Domain of unknown function, YrpD
Probab=27.53 E-value=72 Score=25.93 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=26.5
Q ss_pred eCCEEEEEEeeccCCCCCCcceEEEEEEeeecCCCCCcc
Q psy12174 153 VDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMPDDWKL 191 (195)
Q Consensus 153 v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
-++.-|+-+ |+.+. ...-+.+=+-|.....+|||
T Consensus 36 ~~gt~yiY~-GF~~~----g~~e~D~GLqYS~tyn~WkP 69 (208)
T PF15493_consen 36 SNGTAYIYS-GFWYT----GNVEVDIGLQYSTTYNVWKP 69 (208)
T ss_pred CCCceEEEc-ccccc----CceeEeeeeeeccccCccce
Confidence 477888888 77433 25668888899999999999
No 40
>KOG4693|consensus
Probab=27.23 E-value=55 Score=28.26 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=22.1
Q ss_pred cccccceecCCceeeec-----ccc---eeEEeeCCEEEEEEeec
Q psy12174 128 HRFQSCAYRSNQWRYRG-----RCD---SIQFSVDRRVFMVGFGL 164 (195)
Q Consensus 128 ~~~~~~e~~~~~W~~~~-----~~~---r~~~~v~~~vYvvG~g~ 164 (195)
..|+ |.++.|.... ... +..++++|..|+.| |+
T Consensus 108 y~fD---p~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFG-Gy 148 (392)
T KOG4693|consen 108 YEFD---PETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFG-GY 148 (392)
T ss_pred eeec---cccccccccceeeecCCccCCceeeEECcEEEEec-Ch
Confidence 3466 7889998432 112 33348899999999 53
No 41
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=26.19 E-value=69 Score=22.90 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHHhh
Q psy12174 23 SVFARETLNCKEMHLFEAALNWANAE 48 (195)
Q Consensus 23 ~lL~~d~L~v~E~~vf~Av~~Wv~~~ 48 (195)
.++..+++. .|..+|...++|.++.
T Consensus 18 ~Li~~~dl~-~~~~Ll~~LleWFnf~ 42 (98)
T PF14726_consen 18 GLISEEDLV-KERLLLKQLLEWFNFP 42 (98)
T ss_pred ccccHHHHc-cHHHHHHHHHHHhCCC
Confidence 455556666 8999999999998764
No 42
>KOG0379|consensus
Probab=22.98 E-value=1.1e+02 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=20.8
Q ss_pred ecCCceeeec-----ccceeEE---eeCCEEEEEEeec
Q psy12174 135 YRSNQWRYRG-----RCDSIQF---SVDRRVFMVGFGL 164 (195)
Q Consensus 135 ~~~~~W~~~~-----~~~r~~~---~v~~~vYvvG~g~ 164 (195)
..+.+|..+. ..+|..+ ++++++|++|||-
T Consensus 197 ~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 197 LETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred cccccceecccCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 5678899774 2245443 7899999999443
No 43
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.85 E-value=1.8e+02 Score=19.97 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred HHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHHHHHHhhh
Q psy12174 18 MSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLGEFANKAA 87 (195)
Q Consensus 18 ~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~~L~~~v~ 87 (195)
.+++.+.+.-.+..+ +-+++..|+-.=..--|..-+...+ ..-+.+|+..--||.=+++.+++.+.
T Consensus 9 ~~qiv~~~k~a~fPInn~~eL~~ALP~G~dttc~~G~~e~t----A~E~~kLlT~~DFPfk~a~~vad~iv 75 (80)
T COG4746 9 REQIVEALKGADFPINNPEELVAALPSGPDTTCESGGVEVT----AAEAGKLLTDADFPFKSAEQVADTIV 75 (80)
T ss_pred HHHHHHHHccCCCCCCCHHHHHHhccCCCCCCccCCCeeee----HHHHHhhccccCCCCCCHHHHHHHHH
Confidence 367888888899999 8888888776554444443333222 22356899999999999999987654
Done!