Query psy12174
Match_columns 195
No_of_seqs 187 out of 1019
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.7 2E-18 6.8E-23 144.1 5.0 91 2-101 169-261 (279)
2 3hve_A Gigaxonin; ubiquitin, c 99.7 6.8E-19 2.3E-23 145.2 -4.2 91 2-101 161-254 (256)
3 2eqx_A Kelch repeat and BTB do 99.5 2.2E-15 7.5E-20 109.0 1.6 61 2-74 38-99 (105)
4 3no8_A BTB/POZ domain-containi 99.1 3.7E-11 1.3E-15 93.8 5.6 66 116-184 4-71 (176)
5 3gbw_A E3 ubiquitin-protein li 98.6 6.6E-08 2.3E-12 74.7 6.0 54 126-185 7-61 (164)
6 3hwj_A E3 ubiquitin-protein li 98.3 6.7E-07 2.3E-11 69.5 5.4 54 127-182 3-58 (172)
7 3ii7_A Kelch-like protein 7; p 88.3 0.26 8.8E-06 39.7 2.7 30 135-165 31-65 (306)
8 4asc_A Kelch repeat and BTB do 84.6 1.5 5.1E-05 35.4 5.5 43 135-183 172-219 (315)
9 2xn4_A Kelch-like protein 2; s 83.9 1.7 5.9E-05 34.6 5.6 31 135-166 84-119 (302)
10 2woz_A Kelch repeat and BTB do 83.6 1.5 5E-05 35.5 5.0 44 135-184 182-230 (318)
11 2uvk_A YJHT; unknown function, 83.5 2.1 7.1E-05 35.0 6.0 31 135-166 292-327 (357)
12 4asc_A Kelch repeat and BTB do 83.5 1.2 4E-05 36.0 4.4 31 135-166 219-254 (315)
13 2vpj_A Kelch-like protein 12; 80.5 2.3 7.9E-05 33.7 5.1 44 135-184 229-277 (301)
14 2xn4_A Kelch-like protein 2; s 78.7 2.1 7.3E-05 34.1 4.3 32 135-167 180-216 (302)
15 3ii7_A Kelch-like protein 7; p 78.7 1.9 6.5E-05 34.4 4.1 30 135-165 77-111 (306)
16 2vpj_A Kelch-like protein 12; 77.6 3.5 0.00012 32.7 5.3 32 135-167 135-171 (301)
17 1zgk_A Kelch-like ECH-associat 76.9 3.8 0.00013 32.8 5.4 32 135-167 144-180 (308)
18 2uvk_A YJHT; unknown function, 75.9 1.5 5.1E-05 35.9 2.7 30 135-165 93-128 (357)
19 2woz_A Kelch repeat and BTB do 75.1 3.3 0.00011 33.3 4.6 45 135-183 85-134 (318)
20 1zgk_A Kelch-like ECH-associat 74.8 4.7 0.00016 32.3 5.4 31 135-166 191-226 (308)
21 2zwa_A Leucine carboxyl methyl 72.3 2.1 7.3E-05 39.2 3.0 36 57-92 319-354 (695)
22 1k3i_A Galactose oxidase precu 71.9 4.3 0.00015 36.5 4.9 43 135-178 495-544 (656)
23 2zwa_A Leucine carboxyl methyl 63.0 4.7 0.00016 37.0 3.3 31 135-166 419-462 (695)
24 1k3i_A Galactose oxidase precu 50.3 35 0.0012 30.5 6.8 30 135-165 173-207 (656)
25 4hfs_A Uncharacterized protein 21.4 78 0.0027 24.7 3.4 36 154-194 46-81 (212)
26 1q1v_A DEK protein; winged-hel 21.0 1.6E+02 0.0054 18.7 4.4 41 19-68 19-61 (70)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.72 E-value=2e-18 Score=144.13 Aligned_cols=91 Identities=13% Similarity=0.278 Sum_probs=84.9
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+|+++++|++||.++|..+|++|+|+| +|.+||+||++|++| ++++|++++++||++||||+|+++
T Consensus 169 ~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~---------~~~~r~~~~~~ll~~VRf~l~~~~ 239 (279)
T 3i3n_A 169 RNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQR---------NAEERERYFEELFKLLRLSQMKPT 239 (279)
T ss_dssp HTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHT---------THHHHTTTHHHHHTTSCGGGSCHH
T ss_pred HHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHc---------CHHHHHHHHHHHHHhcCCCCCCHH
Confidence 6899999999999999999999999999999 999999999999975 677899999999999999999999
Q ss_pred HHHHhhhhcCCCCc-hHHHHHH
Q psy12174 81 EFANKAAQLGILTL-QETIDIF 101 (195)
Q Consensus 81 ~L~~~v~~~~ll~~-~e~~~l~ 101 (195)
+|.+.+++++++.. .+|.+++
T Consensus 240 ~L~~~v~~~~l~~~~~~c~~~l 261 (279)
T 3i3n_A 240 YLTRHVKPERLVANNEVCVKLV 261 (279)
T ss_dssp HHHHTTTTSHHHHTCHHHHHHH
T ss_pred HHHHHhhccchhcCCHHHHHHH
Confidence 99999998888865 4798887
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.67 E-value=6.8e-19 Score=145.17 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=72.8
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCCCCCCHH
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRIPTMSLG 80 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRfplm~~~ 80 (195)
+||.+|.++++|++||.++|..+|++|+|+| +|.+||+|+++|++ +++++|++++++||++||||+|+++
T Consensus 161 ~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~---------~~~~~R~~~~~~ll~~VRf~~l~~~ 231 (256)
T 3hve_A 161 THFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIA---------HDTEIRKVHMKDVMSALWVSGLDSS 231 (256)
T ss_dssp HHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCC---------C--CCSTTTHHHHHHHHHHHTTCC-
T ss_pred HHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHH---------cCHHHHHHHHHHHHHhCCCCCCCHH
Confidence 5899999999999999999999999999999 99999999999985 4667899999999999999999999
Q ss_pred HHHHhhhhcCCCCch--HHHHHH
Q psy12174 81 EFANKAAQLGILTLQ--ETIDIF 101 (195)
Q Consensus 81 ~L~~~v~~~~ll~~~--e~~~l~ 101 (195)
+|.+.++++++++.. +|++++
T Consensus 232 ~l~~~v~~~~l~~~~~~~c~~ll 254 (256)
T 3hve_A 232 YLREQMLNEPLVREIVKECSNIP 254 (256)
T ss_dssp CHHHHHHTSTTHHHHHCC-----
T ss_pred HHHHHHhcChHHHhhHHHHHHHh
Confidence 999999999999876 599876
No 3
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-15 Score=108.95 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=57.5
Q ss_pred cchHHhhCCCCcccCCHHHHhhcccCCCCCC-CHHHHHHHHHHHHHhhccccCCCCChhhhHHHHHHhhhccCC
Q psy12174 2 SQAEMALKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGNALYLVRI 74 (195)
Q Consensus 2 ~nf~eV~~seeFl~Ls~~~L~~lL~~d~L~v-~E~~vf~Av~~Wv~~~~~r~~~~~d~~~R~~~l~~ll~~VRf 74 (195)
+||.+|+++++|++||.++|..+|++| + +|++||+||++|++| |+++|.+++++||++||+
T Consensus 38 ~nF~~v~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv~~---------d~~~R~~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 38 THLAQLQNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWINF---------NKEEREAFAESLRTSLKE 99 (105)
T ss_dssp HTCHHHHTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHHHT---------THHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHHHc---------CHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999998 7 999999999999975 678999999999999995
No 4
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens}
Probab=99.15 E-value=3.7e-11 Score=93.80 Aligned_cols=66 Identities=45% Similarity=0.895 Sum_probs=51.8
Q ss_pred CCCCCCCCCccc--cccccceecCCceeeecccceeEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 116 VKARAGLKPQVC--HRFQSCAYRSNQWRYRGRCDSIQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 116 ~~pR~~~~~~~~--~~~~~~e~~~~~W~~~~~~~r~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
.+||++..++.| .||++.+ ++|.+.+.+++++|.+|..||++|+|+||+.+|+.+|+|+|+|+|.+
T Consensus 4 ~~~r~~l~~~~~~v~RFqs~~---~~WgYsg~~DaI~F~Vdr~I~v~G~GLYGs~~g~~~Y~vkieL~~~~ 71 (176)
T 3no8_A 4 DRPRCCLRGKECSINRFQQVE---SRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVNIQIIHTD 71 (176)
T ss_dssp ---------CCEEEECCSEEE---EEECCSSCCEEEEEEESSCEEEEEEEEECBSSSSEEEEEEEEEEETT
T ss_pred CccccccCcceeecccccccC---CCCccCCCcceEEEEeCCeEEEEEEEeeccCCCCCccEEEEEEEecC
Confidence 468988776666 8998655 69999989999999999999999999999999999999999998863
No 5
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Probab=98.59 E-value=6.6e-08 Score=74.71 Aligned_cols=54 Identities=33% Similarity=0.696 Sum_probs=46.8
Q ss_pred cccccccceecCCceeeecc-cceeEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeecC
Q psy12174 126 VCHRFQSCAYRSNQWRYRGR-CDSIQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWTM 185 (195)
Q Consensus 126 ~~~~~~~~e~~~~~W~~~~~-~~r~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~ 185 (195)
.+.||++.+ ++|.+.+. +++++|.+|..||++|+|+|| |+.+|+++|+|+|.+.
T Consensus 7 ~v~RF~s~~---~~W~Y~g~s~DaI~F~Vdr~I~l~G~GLYG---g~g~Y~~~iel~~~~~ 61 (164)
T 3gbw_A 7 VVNRFESHG---GGWGYSAHSVEAIRFSADTDILLGGLGLFG---GRGEYTAKIKLFELGP 61 (164)
T ss_dssp EEECEEEEC---SCBCCCTTCCEEEEEEESSCEEEEEEEEEC---CSSCEEEEEEEEEEET
T ss_pred EEecccccC---CCcccCCCCcceEEEEecCCEEEEEEEeec---CCCccEEEEEEEEccc
Confidence 367888544 78999997 599999999999999999999 5679999999998754
No 6
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR proteins, PHR domain, protein associated with MYC, PAM, PHR1, structural genomics; 2.25A {Mus musculus}
Probab=98.31 E-value=6.7e-07 Score=69.53 Aligned_cols=54 Identities=30% Similarity=0.720 Sum_probs=45.0
Q ss_pred ccccccceecCCceeee-cccceeEEeeCCE-EEEEEeeccCCCCCCcceEEEEEEee
Q psy12174 127 CHRFQSCAYRSNQWRYR-GRCDSIQFSVDRR-VFMVGFGLYGSSNGAADYNVKIVPRH 182 (195)
Q Consensus 127 ~~~~~~~e~~~~~W~~~-~~~~r~~~~v~~~-vYvvG~g~~g~~~~~~~~~~~~~~~~ 182 (195)
+.||+.++ ..++|.+. +++|+++|.||.. ||++|+|+||+ +|+.+|+++|.+.+
T Consensus 3 v~RF~~~~-~~~~W~ys~gs~DaI~F~VDr~~I~l~G~GLYG~-~G~~~y~v~i~~~~ 58 (172)
T 3hwj_A 3 LNRFTKTS-QGRSWNTGNGSPDAICFAVDKPGIVVVGFAVYGG-GGIHEYELEVLVDD 58 (172)
T ss_dssp CCSEEEEC-SSSCBCCGGGCCEEEEEEESSSCEEEEEEEEECC-SSCEEEEEEEEEC-
T ss_pred cccccccc-cCCCcCCCCCCcceEEEEEcCCCEEEEEEEeecC-CCCccEEEEEEEec
Confidence 45676433 34699998 6889999999995 99999999999 78899999999974
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.30 E-value=0.26 Score=39.71 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.7
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~ 165 (195)
+.+++|..++. .+|.. +++++.||++| |..
T Consensus 31 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~G-G~~ 65 (306)
T 3ii7_A 31 PKDYSWTDIRCPFEKRRDAACVFWDNVVYILG-GSQ 65 (306)
T ss_dssp TTTTEEEECCCCSCCCBSCEEEEETTEEEEEC-CBS
T ss_pred CCCCCEecCCCCCcccceeEEEEECCEEEEEe-CCC
Confidence 77899998863 23333 36799999999 643
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=84.56 E-value=1.5 Score=35.36 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=27.8
Q ss_pred ecCCceeeecc--ccee---EEeeCCEEEEEEeeccCCCCCCcceEEEEEEeee
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHW 183 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~ 183 (195)
+.+++|...+. .+|. .++++++||++| |..+. .+.-.++.++.
T Consensus 172 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~-----~~~~~~~~yd~ 219 (315)
T 4asc_A 172 PKKFEWKELAPMQTARSLFGATVHDGRIIVAA-GVTDT-----GLTSSAEVYSI 219 (315)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEETTEEEEEE-EECSS-----SEEEEEEEEET
T ss_pred CCCCeEEECCCCCCchhceEEEEECCEEEEEe-ccCCC-----CccceEEEEEC
Confidence 67899998873 2333 237799999999 65433 23445555544
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=83.88 E-value=1.7 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=22.4
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~g 166 (195)
+.+++|..++. .+|.. +++++.||++| |..+
T Consensus 84 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~ 119 (302)
T 2xn4_A 84 PVKDQWTSVANMRDRRSTLGAAVLNGLLYAVG-GFDG 119 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEE-EECS
T ss_pred CCCCceeeCCCCCccccceEEEEECCEEEEEc-CCCC
Confidence 67899998873 23333 36799999999 6644
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=83.58 E-value=1.5 Score=35.46 Aligned_cols=44 Identities=7% Similarity=0.167 Sum_probs=28.6
Q ss_pred ecCCceeeecc--ccee---EEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
+.+++|...+. .+|. .+++++.||++| |..+. .+.-.++.++..
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~-----~~~~~~~~yd~~ 230 (318)
T 2woz_A 182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAG-GVTED-----GLSASVEAFDLK 230 (318)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEE-EEETT-----EEEEEEEEEETT
T ss_pred CCCCEEEECCCCCCCcccceEEEECCEEEEEc-CcCCC-----CccceEEEEECC
Confidence 67899998863 2333 237799999999 65432 244456666543
No 11
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=83.52 E-value=2.1 Score=35.03 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=19.4
Q ss_pred ecCCceeeecc--ccee---EEeeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v~~~vYvvG~g~~g 166 (195)
+.+++|..++. .+|. .++++++||++| |.++
T Consensus 292 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G-G~~~ 327 (357)
T 2uvk_A 292 WHNGKWDKSGELSQGRAYGVSLPWNNSLLIIG-GETA 327 (357)
T ss_dssp CC---CEEEEECSSCCBSSEEEEETTEEEEEE-EECG
T ss_pred cCCCceeeCCCCCCCcccceeEEeCCEEEEEe-eeCC
Confidence 67899998862 2333 246899999999 6643
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=83.51 E-value=1.2 Score=35.99 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=22.3
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~g 166 (195)
+.+++|..++. .+|.. +++++.||++| |..+
T Consensus 219 ~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G-G~~~ 254 (315)
T 4asc_A 219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG-GFAT 254 (315)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEE-EEEE
T ss_pred CCCCeEEECCCCCCcccceeEEEECCEEEEEC-Cccc
Confidence 67899998873 23332 37799999999 6543
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.47 E-value=2.3 Score=33.74 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=28.3
Q ss_pred ecCCceeeecc--cce---eEEeeCCEEEEEEeeccCCCCCCcceEEEEEEeeec
Q psy12174 135 YRSNQWRYRGR--CDS---IQFSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHWT 184 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r---~~~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~ 184 (195)
+.+++|..++. .+| ..+++++.||++| |..+. .+.-.|..++..
T Consensus 229 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G-G~~~~-----~~~~~v~~yd~~ 277 (301)
T 2vpj_A 229 IRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA-GYDGN-----SLLSSIECYDPI 277 (301)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEC-CBCSS-----SBEEEEEEEETT
T ss_pred CCCCcEEECCCCCCcccceeEEEECCEEEEEc-CcCCC-----cccccEEEEcCC
Confidence 67899998863 233 2237799999999 65433 234456665543
No 14
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=78.73 E-value=2.1 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=22.6
Q ss_pred ecCCceeeecc--ccee---EEeeCCEEEEEEeeccCC
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSVDRRVFMVGFGLYGS 167 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v~~~vYvvG~g~~g~ 167 (195)
+.+++|..++. .+|. .+++++.||++| |..+.
T Consensus 180 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~ 216 (302)
T 2xn4_A 180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVG-GHDGP 216 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEC-CBSSS
T ss_pred CCCCcEEECCCCccccccccEEEECCEEEEEC-CCCCC
Confidence 67899998863 2332 237799999999 66543
No 15
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=78.71 E-value=1.9 Score=34.42 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=21.7
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~ 165 (195)
+.+++|...+. .+|.. +++++.||++| |..
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~ 111 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACAAEGKIYTSG-GSE 111 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEEETTEEEEEC-CBB
T ss_pred CCCCeEEECCCCCccccceeEEEECCEEEEEC-CCC
Confidence 67899998863 23333 37799999999 654
No 16
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=77.64 E-value=3.5 Score=32.66 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=22.5
Q ss_pred ecCCceeeecc--cce---eEEeeCCEEEEEEeeccCC
Q psy12174 135 YRSNQWRYRGR--CDS---IQFSVDRRVFMVGFGLYGS 167 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r---~~~~v~~~vYvvG~g~~g~ 167 (195)
+.+++|...+. .+| ..+++++.||++| |..+.
T Consensus 135 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~ 171 (301)
T 2vpj_A 135 PNIDQWSMLGDMQTAREGAGLVVASGVIYCLG-GYDGL 171 (301)
T ss_dssp TTTTEEEEEEECSSCCBSCEEEEETTEEEEEC-CBCSS
T ss_pred CCCCeEEECCCCCCCcccceEEEECCEEEEEC-CCCCC
Confidence 67899998762 223 3336799999999 66543
No 17
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=76.88 E-value=3.8 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=22.7
Q ss_pred ecCCceeeecc--cce---eEEeeCCEEEEEEeeccCC
Q psy12174 135 YRSNQWRYRGR--CDS---IQFSVDRRVFMVGFGLYGS 167 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r---~~~~v~~~vYvvG~g~~g~ 167 (195)
+.+++|...+. .+| ..+++++.||++| |..+.
T Consensus 144 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~ 180 (308)
T 1zgk_A 144 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG-GFDGT 180 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEETTEEEEEC-CBCSS
T ss_pred CCCCeEeECCCCCccccceEEEEECCEEEEEe-CCCCC
Confidence 67899998863 233 2336799999999 66544
No 18
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=75.92 E-value=1.5 Score=35.93 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=21.5
Q ss_pred ecCCceeeecc---cceeE---EeeCCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGR---CDSIQ---FSVDRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~---~~r~~---~~v~~~vYvvG~g~~ 165 (195)
+.+++|..++. .+|.. ++++++||++| |..
T Consensus 93 ~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~ 128 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG-GVN 128 (357)
T ss_dssp TTTTEEEECSCCCSSCCSSEEEEEETTEEEEEE-CCC
T ss_pred CCCCcEEECCCCCCcccccceEEEECCEEEEEe-CcC
Confidence 67899998762 23332 36799999999 654
No 19
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=75.08 E-value=3.3 Score=33.28 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=27.4
Q ss_pred ecCCceeeecc--cceeE---EeeCCEEEEEEeeccCCCCCCcceEEEEEEeee
Q psy12174 135 YRSNQWRYRGR--CDSIQ---FSVDRRVFMVGFGLYGSSNGAADYNVKIVPRHW 183 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~~---~~v~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~ 183 (195)
+.+++|...+. .+|.. +++++.||++| |.... ...+.-.+..++.
T Consensus 85 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~~---~~~~~~~~~~yd~ 134 (318)
T 2woz_A 85 NVSSEWVGLPPLPSARCLFGLGEVDDKIYVVA-GKDLQ---TEASLDSVLCYDP 134 (318)
T ss_dssp TTTTEEEECSCBSSCBCSCEEEEETTEEEEEE-EEBTT---TCCEEEEEEEEET
T ss_pred CCCCcEEECCCCCccccccceEEECCEEEEEc-CccCC---CCcccceEEEEeC
Confidence 67899998863 23332 36799999999 64321 1233444555543
No 20
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=74.84 E-value=4.7 Score=32.26 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=22.1
Q ss_pred ecCCceeeecc--ccee---EEeeCCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSVDRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v~~~vYvvG~g~~g 166 (195)
+.+++|...+. .+|. .+++++.||++| |..+
T Consensus 191 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-G~~~ 226 (308)
T 1zgk_A 191 PERNEWRMITAMNTIRSGAGVCVLHNCIYAAG-GYDG 226 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEETTEEEEEC-CBCS
T ss_pred CCCCeEeeCCCCCCccccceEEEECCEEEEEe-CCCC
Confidence 67899998863 2332 237799999999 6544
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=72.25 E-value=2.1 Score=39.25 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=26.9
Q ss_pred ChhhhHHHHHHhhhccCCCCCCHHHHHHhhhhcCCC
Q psy12174 57 TAHNKRLVLGNALYLVRIPTMSLGEFANKAAQLGIL 92 (195)
Q Consensus 57 d~~~R~~~l~~ll~~VRfplm~~~~L~~~v~~~~ll 92 (195)
+...|...+..+++.++|++|.+.|+...+...+.+
T Consensus 319 ~e~~R~~~lE~ldE~e~~~l~~~hY~~~~a~~~~~~ 354 (695)
T 2zwa_A 319 ATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEF 354 (695)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHTEEEEEEESCTTC
T ss_pred HHHHHHHhccccchHHHHHHhhccEEEEEEecCCcc
Confidence 445677778888999999999888888766655443
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=71.86 E-value=4.3 Score=36.54 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=27.7
Q ss_pred ecCCceeeecc--ccee---EEee--CCEEEEEEeeccCCCCCCcceEEEE
Q psy12174 135 YRSNQWRYRGR--CDSI---QFSV--DRRVFMVGFGLYGSSNGAADYNVKI 178 (195)
Q Consensus 135 ~~~~~W~~~~~--~~r~---~~~v--~~~vYvvG~g~~g~~~~~~~~~~~~ 178 (195)
+.+++|..++. .+|. .+++ ||+||++||+..|. +....|++++
T Consensus 495 p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~-~~~~~~~~e~ 544 (656)
T 1k3i_A 495 PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD-CTTNHFDAQI 544 (656)
T ss_dssp GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT-CSCCCCEEEE
T ss_pred CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC-CCCCeeEEEE
Confidence 67899998862 2332 2355 99999999555443 2345677643
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=63.01 E-value=4.7 Score=36.95 Aligned_cols=31 Identities=6% Similarity=0.269 Sum_probs=22.0
Q ss_pred ecCCceeeec-c------c-ceeE---Eee--CCEEEEEEeeccC
Q psy12174 135 YRSNQWRYRG-R------C-DSIQ---FSV--DRRVFMVGFGLYG 166 (195)
Q Consensus 135 ~~~~~W~~~~-~------~-~r~~---~~v--~~~vYvvG~g~~g 166 (195)
+.+++|...+ . + +|.. +++ +|.||++| |..+
T Consensus 419 ~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G-G~~~ 462 (695)
T 2zwa_A 419 IHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG-GRKA 462 (695)
T ss_dssp ECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC-CBSS
T ss_pred CCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc-CCCC
Confidence 6789999776 2 2 3433 377 99999999 6543
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=50.27 E-value=35 Score=30.48 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=20.6
Q ss_pred ecCCceeeeccc---ceeEEee--CCEEEEEEeecc
Q psy12174 135 YRSNQWRYRGRC---DSIQFSV--DRRVFMVGFGLY 165 (195)
Q Consensus 135 ~~~~~W~~~~~~---~r~~~~v--~~~vYvvG~g~~ 165 (195)
+.+++|...+.. ....+++ +++||++| |..
T Consensus 173 p~~~~W~~~~~~P~~~~~~av~~~~g~l~v~G-G~~ 207 (656)
T 1k3i_A 173 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWS-SYR 207 (656)
T ss_dssp TTSCEEEEEEECSSCCSEEEEETTTTEEEEEE-ECC
T ss_pred CCCCeeeeeccCCCCceeEEEEecCCEEEEEe-ccc
Confidence 678999977632 2222345 99999999 643
No 25
>4hfs_A Uncharacterized protein YNCM; peptidase A4-like fold, YRPD, PF15493 family, structural GEN joint center for structural genomics, JCSG; HET: SO4; 1.55A {Bacillus subtilis subsp}
Probab=21.37 E-value=78 Score=24.68 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=25.3
Q ss_pred CCEEEEEEeeccCCCCCCcceEEEEEEeeecCCCCCccccc
Q psy12174 154 DRRVFMVGFGLYGSSNGAADYNVKIVPRHWTMPDDWKLNVI 194 (195)
Q Consensus 154 ~~~vYvvG~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (195)
++--|+-. |+.|. ..--|.+=+.|+...++|||.+.
T Consensus 46 g~TayIY~-Gf~~~----g~~eVDaGLqyS~tyn~Wap~~~ 81 (212)
T 4hfs_A 46 VSTPYIYS-GFRAT----SGTEADIGLQYSKQYNVWKPLMK 81 (212)
T ss_dssp SCEEEEEE-EEEET----TSCEEEEEEEEETTTTEEEEEEE
T ss_pred CCccEEEe-ccccC----CCceeeeeeecccccCCcceEEE
Confidence 55666655 33222 23468899999999999999864
No 26
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=20.96 E-value=1.6e+02 Score=18.66 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=26.0
Q ss_pred HHHhhcccCCCCCC-CHHHHHHHHHHHH-HhhccccCCCCChhhhHHHHHHh
Q psy12174 19 STLESVFARETLNC-KEMHLFEAALNWA-NAECVRRDLEPTAHNKRLVLGNA 68 (195)
Q Consensus 19 ~~L~~lL~~d~L~v-~E~~vf~Av~~Wv-~~~~~r~~~~~d~~~R~~~l~~l 68 (195)
..+.++|+.-+|.- +...|-+.+..+. . +|...|+.++..+
T Consensus 19 ~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg---------~dLs~kK~~I~~~ 61 (70)
T 1q1v_A 19 ETIKKLLASANLEEVTMKQICKKVYENYPT---------YDLTERKDFIKTT 61 (70)
T ss_dssp HHHHHHHTTSCGGGCCHHHHHHHHHHHCSS---------SCCSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHhHHHHHHHHHHHccC---------CCChHHHHHHHHH
Confidence 44566777777766 7777777777664 3 3445666665554
Done!