RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12174
(195 letters)
>gnl|CDD|191925 pfam08005, PHR, PHR domain. This domain is called PHR as it was
original found in the proteins PAM, highwire and RPM.
This domain can be duplicated in the highwire, PFAM and
PRM sequence. The C-terminal region of the protein BTBD1
includes the PHR domain and is known to interact with
Topoisomerase I, an enzyme which relaxes DNA supercoils.
Length = 147
Score = 84.7 bits (210), Expect = 4e-21
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 4/52 (7%)
Query: 128 HRFQSCAYRSNQWRYRGRC-DSIQFSVDRRVFMVGFGLYGSSNGAADYNVKI 178
+RFQS ++W Y G D+I+FSVDRR+F+VGFGLYG S+G +Y VK+
Sbjct: 1 NRFQSV---GSRWGYSGTSVDAIRFSVDRRIFIVGFGLYGGSHGPGEYQVKL 49
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 47.3 bits (113), Expect = 2e-07
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 8 LKSEGFVDIDMSTLESVFARETLNC-KEMHLFEAALNWANAECVRRDLEPTAHNKRLVLG 66
SE F+++ + L + + + LN E +FEA L W + +R R L
Sbjct: 32 SSSEEFLELPLEQLLELLSSDDLNVSSEEEVFEAVLRWVKHDPEKR---------REHLP 82
Query: 67 NALYLVRIPTMSLGEFANK 85
L VR+P +S
Sbjct: 83 ELLEHVRLPLLSPDYLLEV 101
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 36.8 bits (86), Expect = 0.001
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 8 LKSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLG 66
KSE F+++ L + + + LN E +FEA + W V+ D+E + +L
Sbjct: 32 SKSEEFLELSKEQLLELLSSDELNVPSEEEVFEAVIKW-----VKHDVENRKKHLPELLS 86
Query: 67 NALYLVRIPTMSLGEFAN 84
VR+P +S +
Sbjct: 87 A----VRLPLLSPEYLLD 100
>gnl|CDD|179886 PRK04860, PRK04860, hypothetical protein; Provisional.
Length = 160
Score = 29.9 bits (68), Expect = 0.49
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 121 GLKPQVCHRFQSCAYRSNQWRYRGRCDSIQFSVDR 155
G+ + H+F+ + R + YR +C Q +V R
Sbjct: 99 GVPARRTHQFEVQSVRGKTFPYRCKCQEHQLTVRR 133
>gnl|CDD|203639 pfam07472, PA-IIL, Fucose-binding lectin II (PA-IIL). In
Pseudomonas aeruginosa the fucose-binding lectin II
(PA-IIL) contributes to the pathogenic virulence of the
bacterium. PA-IIL functions as a tetramer when binding
fucose. Each monomer is comprised of a nine-stranded,
antiparallel beta-sandwich arrangement and contains two
calcium cations that mediate the binding of fucose in a
recognition mode unique among carbohydrate-protein
interactions.
Length = 107
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 160 VGFGLYGSSNGA-ADYNVKIVPRHWTM 185
F + GS +G DYN IV +W +
Sbjct: 81 PNFAIIGSEDGTDNDYNDGIVVLNWPL 107
>gnl|CDD|214012 cd12839, Killer_toxin_beta, Beta subunit of killer toxin from
halotolerant yeast. This family contains the beta
subunit of killer toxins that are secreted by several
strains of yeasts and fungi. These toxins are proteinous
substances that kill sensitive strains. The halotolerant
yeast Pichia farinosa KK1 strain produces the SMK toxin,
with maximum killer activity under acidic pH and high
salt concentration. This toxin is composed of alpha and
beta subunits that interact tightly with each other
under acidic conditions but easily dissociated and loose
activity under neutral conditions. It shares topology to
that of the fungal killer toxin, KP4, which contains a
rare structural motif, suggesting that these toxins may
be evolutionally and/or functionally related.
Length = 74
Score = 27.3 bits (60), Expect = 1.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 144 GRCDSIQFSVDRRVFMVGFGLYGSSN 169
G S ++ V+M+ F L G SN
Sbjct: 39 GVACSTVKDGNKDVYMIKFSLAGGSN 64
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
Length = 258
Score = 28.2 bits (63), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 92 LTLQETIDIF-LHFTAHNKPHLSYPVKARAGLKPQV 126
L+L + ++I LH H K H+SY V + G P V
Sbjct: 96 LSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAV 131
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 27.5 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 96 ETIDIFLHFTAHNKPHLSYPVKARAGLKPQVCHRFQSCAYRSNQWRYRG 144
ET DIF+H P SY + G +P +C +F + R RG
Sbjct: 214 ETTDIFVHMM----PFYSYDIPHTCGPEPAICCQF-------DFARMRG 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.135 0.423
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,789,292
Number of extensions: 877141
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 14
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)