RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12174
(195 letters)
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2,
PAM-highwire-RPM-1 domain, toposis regulation, protein
structure initiative; 2.20A {Homo sapiens}
Length = 176
Score = 80.1 bits (197), Expect = 2e-19
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 117 KARAGLKPQVC--HRFQSCAYRSNQWRYRGRCDSIQFSVDRRVFMVGFGLYGSSNGAADY 174
+ R L+ + C +RFQ R W Y G D I+FSV++R+F+VGFGLYGS +G DY
Sbjct: 5 RPRCCLRGKECSINRFQQVESR---WGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDY 61
Query: 175 NVKI 178
V I
Sbjct: 62 QVNI 65
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein
associated with MYC, PAM, RPM-1, PHR domain, structural
genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Length = 164
Score = 71.2 bits (174), Expect = 4e-16
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 125 QVCHRFQSCAYRSNQWRYRGR-CDSIQFSVDRRVFMVGFGLYGSSNGAADYNVKI 178
V +RF+S W Y ++I+FS D + + G GL+G G +Y KI
Sbjct: 6 SVVNRFES---HGGGWGYSAHSVEAIRFSADTDILLGGLGLFG---GRGEYTAKI 54
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR
proteins, PHR domain, protein associated with MYC, PAM,
PHR1, structural genomics; 2.25A {Mus musculus}
Length = 172
Score = 68.2 bits (166), Expect = 6e-15
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 127 CHRFQSCAYRSNQWRY-RGRCDSIQFSVDRR-VFMVGFGLYGSSNGAADYNVKIVPRHWT 184
+RF + + W G D+I F+VD+ + +VGF +YG G +Y ++++
Sbjct: 3 LNRFTKTS-QGRSWNTGNGSPDAICFAVDKPGIVVVGFAVYGGG-GIHEYELEVLVDDSE 60
Query: 185 MPDD 188
D
Sbjct: 61 HAGD 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 8e-04
Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 93/194 (47%)
Query: 1 MSQAEMA-LKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAH 59
M +A LKS+G + D + FA H
Sbjct: 1739 MEKAAFEDLKSKGLIPAD-----ATFA-------------------------------GH 1762
Query: 60 NKRLVLGNALYLVRIPTMSLGEFANKAAQLGILTLQETIDIFLHFTAHNKPHLSYPVKAR 119
SLGE+A A+ +++++ +++ V R
Sbjct: 1763 ------------------SLGEYAALASLADVMSIESLVEV---------------VFYR 1789
Query: 120 AGLKPQVCHRFQS-------CAYRSNQWRYRGRCDSIQFSVDRRVFMVGFGLYGSSNG-- 170
R + A + +++Q+ V+R G G
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER---------VGKRTGWL 1840
Query: 171 --AADYNVK---IV 179
+YNV+ V
Sbjct: 1841 VEIVNYNVENQQYV 1854
Score = 32.7 bits (74), Expect = 0.083
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 27/116 (23%)
Query: 2 SQAEMALKSEGFV-----DIDMSTLESV-------FARETLNCKEMHLFEAALNWANAEC 49
+ AE+ K G+V + + V F L ++H A L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL------ 109
Query: 50 VRRDLEPTAHNKRLVLGN---ALYLVRIPTMSLGEFA-NKAAQLGILTLQETIDIF 101
++ + T + ++ N A + + P A +A G L + IF
Sbjct: 110 --QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL---VAIF 160
Score = 28.1 bits (62), Expect = 2.5
Identities = 36/238 (15%), Positives = 64/238 (26%), Gaps = 93/238 (39%)
Query: 19 STLESVFARETLNCKEMHLFEAALNWANAECV----RRDLEPTAHNKRLVLGNALYLVRI 74
+ ES F + LF + C L P+ L +
Sbjct: 287 DSWES-FFVSVRKAITV-LF-----FIGVRCYEAYPNTSLPPSILEDSLENNEG-----V 334
Query: 75 PT-MSLGEFANKAAQLGI--LT---LQETIDIF-LHFTAHNKPHLS------------YP 115
P+ M L I LT +Q+ ++ H A + +S P
Sbjct: 335 PSPM-----------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 116 ------------VKARAGL----------KPQVCHRF------------QSCAYRSNQWR 141
KA +GL K + +RF + N+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 142 YRGRCDSIQFSVDRRVFMVGFGLYGSSNGA--ADYNVKIVPRH----WTMPDDWKLNV 193
+ +++ F+ V Y + +G+ + I R +P W+
Sbjct: 444 VK---NNVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 34.1 bits (79), Expect = 0.019
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 9 KSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGN 67
+E F+++ L+ V + E LN E ++FEA + W + D E +++ + +
Sbjct: 168 STEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRW-----IAHDTE----IRKVHMKD 218
Query: 68 ALYLVRIPTMSLGEFANK 85
+ + + + +
Sbjct: 219 VMSALWVSGLDSSYLREQ 236
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 33.8 bits (78), Expect = 0.022
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 9 KSEGFVDIDMSTLESVFARETLN-CKEMHLFEAALNWANAECVRRDLEPTAHNKRLVLGN 67
+ E F + + + + E LFE L W V+R+ E +
Sbjct: 176 QDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKW-----VQRNAE----ERERYFEE 226
Query: 68 ALYLVRIPTMSLGEFANK 85
L+R+ M
Sbjct: 227 LFKLLRLSQMKPTYLTRH 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.044
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 33/124 (26%)
Query: 92 LTLQETIDIFLHFTAHNKPHLSYPVKARAGLKPQVC----HRFQSCAYRSNQWRYRGRCD 147
LT E + L + L P + P+ + + W++ CD
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDL--PREVLTTN-PRRLSIIAESIRDGLATWDNWKHVN-CD 353
Query: 148 ----SIQFSVD-------RRVFMVGFGLYGSSNGAADYNVKIVPRH-----WTMPDDWKL 191
I+ S++ R++F ++ + I P W +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFD-RLSVF-------PPSAHI-PTILLSLIWFDVIKSDV 404
Query: 192 NVIM 195
V++
Sbjct: 405 MVVV 408
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich
repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A
{Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Length = 53
Score = 24.5 bits (54), Expect = 5.9
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 111 HLSYPVKARAGLKPQVCHRFQSCAYRSNQWR 141
L P + VC R+ A + W+
Sbjct: 23 CLCLPELLKVS---GVCKRWYRLASDESLWQ 50
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 26.2 bits (58), Expect = 8.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 163 GLYGSSNGAADYNVKIVPRHWTMPD 187
GLY ++ A V + RH +
Sbjct: 96 GLYLMNHRAVQNTVPLDQRHLNLGK 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.423
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,016,077
Number of extensions: 169098
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 15
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)