RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12174
         (195 letters)



>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
           {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 177

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 6   MALKSEGFVDIDMSTLESVFARETLNCKEMHLFEAALNWANAECVRRDLEPTAHNKRLVL 65
           M ++  G ++++      +  + T     ++L            V  +   T   K+ +L
Sbjct: 69  MEIRGLGIINVERFYGLQITKQRTEIQLMVNLLS----LEKQTTVTFERLGTELKKQRLL 124

Query: 66  GNALYLVRIP 75
           G  L    IP
Sbjct: 125 GVDLSFYEIP 134


>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus
           thermophilus [TaxId: 274]}
          Length = 292

 Score = 25.2 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 102 LHFTAHNKPHLSYPVKARAGLKP 124
           +HF   NK   +  V  R GL+P
Sbjct: 269 VHFYTLNKSPATRMVLERLGLRP 291


>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase
           {Escherichia coli [TaxId: 562]}
          Length = 275

 Score = 24.8 bits (53), Expect = 7.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 102 LHFTAHNKPHLSYPVKARAGLKP 124
            HF   N+  +SY +    G++P
Sbjct: 252 FHFYTLNRAEMSYAICHTLGVRP 274


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 733,486
Number of extensions: 31302
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 5
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)