BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12177
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LOM|A Chain A, Backbone Structure Of Human Membrane Protein Higd1a
Length = 93
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 91 QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTV 149
+E KLIRK KE P VP+G +A + GLY +K G+ ++S ++ RV AQGF V
Sbjct: 13 EEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVV 72
Query: 150 LALTGGLIYTAYQ 162
A+T G+ Y+ Y+
Sbjct: 73 GAMTVGMGYSMYR 85
>pdb|2LON|A Chain A, Backbone Structure Of Human Membrane Protein Higd1b
Length = 99
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 91 QETGTEKLIRKFKENPLVPIGCVATSAALGVGLYSMK-LGDRRLSQMMMRTRVVAQGFTV 149
++ +EKL+RK +E+PLVPIG +Y ++ G ++S ++ TRV AQ V
Sbjct: 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
Query: 150 LALTGGLIYTAYQ 162
A+ G +YT Y
Sbjct: 74 GAIMLGAVYTMYS 86
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
Length = 394
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 60 MANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFKENPLVPIGCVATS 116
++NK+T +E+D++ L +Q G++ +E GT + NP + +G VAT+
Sbjct: 130 VSNKMTDRERDKVMPLIIQ------GFKDAAEEAGTSVTGGQTVLNPWIVLGGVATT 180
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 44 YLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFK 103
YLK E+ F + + N++ E + L +QK+ + + E+ + I+K+K
Sbjct: 551 YLKLSEVGPFKHINKICYNRVLHGENTSIKKLDIQKE----NHFKVVNESLSRLGIKKYK 606
Query: 104 ENPL 107
+PL
Sbjct: 607 YSPL 610
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 44 YLKTVEIKNFYTLGPVMANKITQQEQDELDWLTLQKKLQVGGYEQFTQETGTEKLIRKFK 103
YLK E+ F + + N++ E + L +QK+ + + E+ + I+K+K
Sbjct: 552 YLKLSEVGPFKHINKICYNRVLHGENTSIKKLDIQKE----NHFKVVNESLSRLGIKKYK 607
Query: 104 ENPL 107
+PL
Sbjct: 608 YSPL 611
>pdb|3OWE|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|F Chain F, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|H Chain H, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|J Chain J, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|L Chain L, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|N Chain N, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|P Chain P, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
Length = 234
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 48 VEIKNFYTLGPVMA---NKITQQEQD--ELDWLTLQKKLQV-------GGYEQFTQETGT 95
V I N +LG + N +T QE D WLT +KKL GY +FT++ T
Sbjct: 131 VTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNT 190
Query: 96 EKLIRKFKENPLVPI 110
F + LVP
Sbjct: 191 SFWFDLFPKKELVPF 205
>pdb|1XXG|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin G
Length = 233
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 48 VEIKNFYTLGPVMA---NKITQQEQD--ELDWLTLQKKLQV-------GGYEQFTQETGT 95
V I N +LG + N +T QE D WLT +KKL GY +FT++ T
Sbjct: 130 VTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNT 189
Query: 96 EKLIRKFKENPLVPI 110
F + LVP
Sbjct: 190 SFWFDLFPKKELVPF 204
>pdb|3MC0|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A Mouse T-Cell Receptor Beta Chain
pdb|3MC0|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A Mouse T-Cell Receptor Beta Chain
Length = 239
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 48 VEIKNFYTLGPVMA---NKITQQEQD--ELDWLTLQKKLQV-------GGYEQFTQETGT 95
V I N +LG + N +T QE D WLT +KKL GY +FT++ T
Sbjct: 130 VTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNT 189
Query: 96 EKLIRKFKENPLVPI 110
F + LVP
Sbjct: 190 SFWFDLFPKKELVPF 204
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 26.2 bits (56), Expect = 9.7, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 39 PTMEEYLKTVEIKNFYTLGPVMANKITQQEQDELDW----LTLQKKLQVGGYEQFTQETG 94
P ++ ++ + N Y L +++ ++ +E+D LD+ + Q+ G YE+F +
Sbjct: 264 PNSKDIVEHINTDNSYPLLYLLSKELNCKEEDILDFELCLMDTQEPCFTGVYEEFIEGAR 323
Query: 95 TEKLIRKF 102
+ L+ F
Sbjct: 324 FDNLLGSF 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,500,150
Number of Sequences: 62578
Number of extensions: 160505
Number of successful extensions: 440
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)